BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032703
(135 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZS51|PMP22_ARATH Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22
PE=1 SV=1
Length = 190
Score = 172 bits (435), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 86/118 (72%), Positives = 99/118 (83%), Gaps = 2/118 (1%)
Query: 1 MGSIAKK--GLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVL 58
MGS K LQ+YL QLQQHPLRTKAITAGVLS +SD+V+QKL+GIQK+QLRR+LLKV+
Sbjct: 1 MGSSPPKKTTLQRYLSQLQQHPLRTKAITAGVLSGVSDVVSQKLSGIQKIQLRRVLLKVI 60
Query: 59 FGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVE 116
F +LGP GHF H LDK FKGKKDT TVAKKV+LEQLT SP N+L+FMIYYGVV+E
Sbjct: 61 FAGGFLGPAGHFFHTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVVIE 118
>sp|Q54GD8|PX24C_DICDI PXMP2/4 family protein 3 OS=Dictyostelium discoideum
GN=DDB_G0290223 PE=3 SV=1
Length = 184
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 65/109 (59%), Gaps = 6/109 (5%)
Query: 12 YLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCAYLGPFGHFL 71
Y+ +L+ P++TKA+T+ LS IS +VAQK +K+ ++ ++G P H+
Sbjct: 17 YMKKLKSKPIQTKALTSATLSFISSVVAQKFIEKKKINWNAVVKFTVWGLIS-SPLVHYW 75
Query: 72 HLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGV--VVEGK 118
H+ILD++FK KD K++++QL +P+ N+ F Y V +++GK
Sbjct: 76 HIILDRLFKNIKDKYQSWGKLIVDQLVFAPFINIAF---YSVLAILDGK 121
>sp|Q2KIY1|PXMP2_BOVIN Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2 PE=2 SV=3
Length = 196
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 63/108 (58%), Gaps = 8/108 (7%)
Query: 1 MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQ-------KLTGIQKLQLRRL 53
+G + ++ L QYL L+ +P+ TKA T+G+LSA+ + +AQ K QKL +
Sbjct: 14 LGPLPRRALSQYLRLLRLYPVLTKAATSGILSALGNFLAQLIEKKQKKENCSQKLDVSGP 73
Query: 54 LLKVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSP 101
L ++G + GP GHF +L++++ + + + K+++L++L +P
Sbjct: 74 LRYAIYGFFFTGPLGHFFYLLMERWIPSEVPLAGI-KRLLLDRLLFAP 120
>sp|Q07066|PXMP2_RAT Peroxisomal membrane protein 2 OS=Rattus norvegicus GN=Pxmp2 PE=1
SV=2
Length = 194
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 77/135 (57%), Gaps = 7/135 (5%)
Query: 3 SIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQK-----LQLRRLLLKV 57
S+ K+ L QYL+ L+ +P+ TKA+++G+LSA+ +++AQ + QK L++ LL +
Sbjct: 16 SLPKRALAQYLLFLKFYPVVTKAVSSGILSALGNLLAQMIEKKQKKDSRSLEVSGLLRYL 75
Query: 58 LFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEG 117
++G GP H+L+L ++ + + V K+++L++L +P L+ + ++EG
Sbjct: 76 VYGLFVTGPLSHYLYLFMEYWVPPEVPWARV-KRLLLDRLFFAP-TFLLLFFFVMNLLEG 133
Query: 118 KLILHNIINFTFGRW 132
K I + G W
Sbjct: 134 KNISVFVAKMRSGFW 148
>sp|Q54FR4|PX24D_DICDI PXMP2/4 family protein 4 OS=Dictyostelium discoideum
GN=DDB_G0290631 PE=3 SV=1
Length = 185
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 10 QQYLIQLQQHPLRTKAITAGVLSAISDIVAQKL----TGIQKLQLRRLLLKVLFGCAYLG 65
YL QL ++P+ TKA+T+G L ISD + Q + +K +R + +FG A G
Sbjct: 13 SHYLSQLHKYPVATKAVTSGFLYLISDSLVQGIELSRDKDKKYDFKRSMRMAVFGFAVTG 72
Query: 66 PFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGK 118
P H+ LDK F KK K+ ++Q+ SP N +F G ++EGK
Sbjct: 73 PLFHYWFKYLDKHFP-KKSYRHAFIKLTIDQVVCSPVFNFLFFSGMG-ILEGK 123
>sp|Q9NR77|PXMP2_HUMAN Peroxisomal membrane protein 2 OS=Homo sapiens GN=PXMP2 PE=1 SV=3
Length = 195
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 1 MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRR------LL 54
+G++ ++ L QYL+ L+ +P+ TKA T+G+LSA+ + +AQ + +K + R L
Sbjct: 14 LGALPRRALAQYLLFLRLYPVLTKAATSGILSALGNFLAQMIEKKRKKENSRSLDVGGPL 73
Query: 55 LKVLFGCAYLGPFGHFLHLILD 76
++G + GP HF + ++
Sbjct: 74 RYAVYGFFFTGPLSHFFYFFME 95
>sp|P39210|MPV17_HUMAN Protein Mpv17 OS=Homo sapiens GN=MPV17 PE=1 SV=1
Length = 176
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 10 QQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT---GIQKLQLRRLLLKVLFGCAYLGP 66
+ Y L HP + + +TAG L + DI++Q+L G+Q+ Q R L V GC ++GP
Sbjct: 5 RAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQEHQRGRTLTMVSLGCGFVGP 64
Query: 67 FGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSP 101
+ +LD+ G + KK++L+Q +P
Sbjct: 65 VVGGWYKVLDRFIPGTTKVDAL-KKMLLDQGGFAP 98
>sp|Q54XX9|PX24B_DICDI PXMP2/4 family protein 2 OS=Dictyostelium discoideum
GN=DDB_G0278529 PE=3 SV=1
Length = 193
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 12 YLIQLQQHPLRTKAITAGVLSAISDIVAQKLT-------GIQKLQLRRLLLKVLFGCAYL 64
YL L HPL TK+++ G L DI+AQ+L KL +R+ G Y
Sbjct: 8 YLGLLDNHPLVTKSLSTGFLMGTGDILAQRLEHKFKDEKSQFKLDYKRVATMSTVGIFYS 67
Query: 65 GPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGKLILHNI 124
GP H+ + LD + KG + S + KK++++QL +P FM + K L N+
Sbjct: 68 GPMLHYWYRSLDIMVKG-EGRSVIIKKMLIDQLLFAPVAIGGFMTVTN-FINNKGELKNL 125
Query: 125 INFT 128
NFT
Sbjct: 126 ENFT 129
>sp|Q5BK62|MPV17_RAT Protein Mpv17 OS=Rattus norvegicus GN=Mpv17 PE=2 SV=1
Length = 176
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 10 QQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT---GIQKLQLRRLLLKVLFGCAYLGP 66
+ Y L HP + + +TAG L + DI++Q+L G+Q+ Q R L GC ++GP
Sbjct: 5 RAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQQHQTGRTLTMASLGCGFVGP 64
Query: 67 FGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSP 101
+ +LD + G + + KK++L+Q +P
Sbjct: 65 VVGGWYRVLDHLIPGTTKVNAL-KKMLLDQGGFAP 98
>sp|Q2KIN6|MPV17_BOVIN Protein Mpv17 OS=Bos taurus GN=MPV17 PE=2 SV=1
Length = 176
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 10 QQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT---GIQKLQLRRLLLKVLFGCAYLGP 66
+ Y L HP + + +TAG L + D+++Q+L G+Q Q R L GC ++GP
Sbjct: 5 RAYQRALTAHPWKVQVLTAGSLMGLGDVISQQLVERRGLQAHQAGRTLTMASLGCGFVGP 64
Query: 67 FGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSP 101
+ +LD++ G + KK++L+Q +P
Sbjct: 65 VVGGWYRVLDRLIPGTTKVDAL-KKMLLDQGGFAP 98
>sp|P19258|MPV17_MOUSE Protein Mpv17 OS=Mus musculus GN=Mpv17 PE=2 SV=1
Length = 176
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 10 QQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT---GIQKLQLRRLLLKVLFGCAYLGP 66
+ Y L HP + + +TAG L + D+++Q+L G+Q+ Q R L V GC ++GP
Sbjct: 5 RAYQRALAAHPWKVQVLTAGSLMGVGDMISQQLVERRGLQQHQAGRTLTMVSLGCGFVGP 64
Query: 67 FGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSP 101
+ +LD + G + KK++L+Q +P
Sbjct: 65 VVGGWYKVLDHLIPGTTKVHAL-KKMLLDQGGFAP 98
>sp|A5D787|M17L2_BOVIN Mpv17-like protein 2 OS=Bos taurus GN=MPV17L2 PE=2 SV=1
Length = 218
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 21 LRTKAITAGVLSAISDIVAQ----KLTGIQKLQLRRLLLKVLFGCAYLGPFGHFLHLILD 76
L T + GVL A D Q + QK RR + GC+ +GPF H+ +L LD
Sbjct: 26 LVTNTLGCGVLMAAGDGARQTWEIRARPGQKFDPRRSVSMFAVGCS-MGPFLHYWYLWLD 84
Query: 77 KIFK--GKKDTSTVAKKVVLEQLTSSPWNNLMFMIYY 111
++F G V KKV+++QL +SP M ++Y
Sbjct: 85 RLFPASGFPGLPNVLKKVLIDQLVASP----MLGVWY 117
>sp|P42925|PXMP2_MOUSE Peroxisomal membrane protein 2 OS=Mus musculus GN=Pxmp2 PE=2 SV=2
Length = 194
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 76/123 (61%), Gaps = 7/123 (5%)
Query: 1 MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQK-----LQLRRLLL 55
+GS+ K+ L QYL+ L+ +P+ TKA+++G+LSA+ +++AQ + Q+ L++ LL
Sbjct: 14 LGSLPKRALAQYLLLLKLYPVLTKAVSSGILSALGNLLAQTIEKKQRKDSRLLEVSGLLR 73
Query: 56 KVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVV 115
+++G GP H+L+L ++ + ++V K+++L++L +P L+ + ++
Sbjct: 74 YLVYGLFVTGPLSHYLYLFMEYSVPPEVPWASV-KRLLLDRLFFAP-TFLLLFFFVMNLL 131
Query: 116 EGK 118
EGK
Sbjct: 132 EGK 134
>sp|Q5TZ51|MPV17_DANRE Protein Mpv17 OS=Danio rerio GN=mpv17 PE=2 SV=1
Length = 177
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 10 QQYLIQLQQHPLRTKAITAGVLSAISDIVAQKL---TGIQKLQLRRLLLKVLFGCAYLGP 66
+ Y + +HP + + ITAG L + D+++Q+L G+ RR + G ++GP
Sbjct: 6 RSYQALMAKHPWKVQIITAGSLVGVGDVISQQLIERRGLANHNARRTAKMMSIGFFFVGP 65
Query: 67 FGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSP 101
+ +LDK+ G ++ + KK++++Q+ +P
Sbjct: 66 VVGGWYKVLDKLVTGGTKSAAL-KKMLVDQVGFAP 99
>sp|Q66GV0|MPV17_XENLA Protein Mpv17 OS=Xenopus laevis GN=mpv17 PE=2 SV=2
Length = 177
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 16 LQQHPLRTKAITAGVLSAISDIVAQKL---TGIQKLQLRRLLLKVLFGCAYLGPFGHFLH 72
L HP + + +TAG L + D+++Q+L G++ + R + + G ++GP +
Sbjct: 12 LGAHPWKVQIVTAGSLVGVGDVISQQLLERKGLKGHSIERTVKMMGIGFCFVGPVVGGWY 71
Query: 73 LILDKIFKGKKDTSTVAKKVVLEQLTSSP 101
ILD+I G + KK++L+Q+ +P
Sbjct: 72 KILDRIIPGSGKPVAL-KKMLLDQVAFAP 99
>sp|O14142|SYM1_SCHPO Protein sym1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sym1 PE=3 SV=1
Length = 206
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 21/127 (16%)
Query: 11 QYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT----------GIQKLQL---------R 51
+Y ++ P+ T +TAG L ISD VAQ LT G+ ++L +
Sbjct: 8 RYNALFEKAPIMTMCLTAGTLGGISDAVAQGLTIYQTNKNAMIGLDGVRLNTHPEIPSIK 67
Query: 52 RLLLKVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYY 111
R+L V FG A + PF +L F +K V K+V+L+Q +P+ F +
Sbjct: 68 RVLQFVTFGFA-ISPFQFRWLRLLSAKFPIEKGAINVVKRVLLDQAVFAPFGTAFFFSWM 126
Query: 112 GVVVEGK 118
+ EGK
Sbjct: 127 -TLAEGK 132
>sp|Q8VIK2|M17L2_MOUSE Mpv17-like protein 2 OS=Mus musculus GN=Mpv17l2 PE=1 SV=1
Length = 200
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 21 LRTKAITAGVLSAISDIVAQ----KLTGIQKLQLRRLLLKVLFGCAYLGPFGHFLHLILD 76
L T + GVL A D Q + Q+ RR GC+ +GPF HF +L LD
Sbjct: 26 LLTNTLGCGVLMAAGDGARQVWEVRARPGQRFSARRSASMFAVGCS-MGPFLHFWYLWLD 84
Query: 77 KIF--KGKKDTSTVAKKVVLEQLTSSP 101
++ G + +V KKV+++Q +SP
Sbjct: 85 RLLPASGLRSLPSVMKKVLVDQTVASP 111
>sp|Q6DIY8|M17L2_XENTR Mpv17-like protein 2 OS=Xenopus tropicalis GN=mpv17l2 PE=2 SV=1
Length = 222
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 23 TKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKV----LFGCAYLGPFGHFLHLILDKI 78
T ++ G+L I D + Q + + +R L+ GC+ +GP HF + LD+
Sbjct: 28 TNTVSCGLLLGIGDSIQQSREVRRDPERKRDWLRTGRMFAIGCS-MGPLMHFWYSWLDRS 86
Query: 79 FKGKKDTSTVAKKVVLEQLTSSP 101
F G+ T V +KV+++QL +SP
Sbjct: 87 FPGRGIT-VVMRKVLIDQLVASP 108
>sp|Q567V2|M17L2_HUMAN Mpv17-like protein 2 OS=Homo sapiens GN=MPV17L2 PE=1 SV=2
Length = 206
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 21 LRTKAITAGVLSAISDIVAQ----KLTGIQKLQLRRLLLKVLFGCAYLGPFGHFLHLILD 76
L T + G L A D V Q + Q RR GC+ +GPF H+ +L LD
Sbjct: 26 LVTNTLGCGALMAAGDGVRQSWEIRARPGQVFDPRRSASMFAVGCS-MGPFLHYWYLSLD 84
Query: 77 KIF--KGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGKLI 120
++F G + V KKV+++QL +SP + + + G +EG+ +
Sbjct: 85 RLFPASGLRGFPNVLKKVLVDQLVASPLLGVWYFLGLG-CLEGQTV 129
>sp|Q54ZX5|PX24A_DICDI PXMP2/4 family protein 1 OS=Dictyostelium discoideum
GN=DDB_G0277335 PE=3 SV=1
Length = 202
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 10 QQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCAYLGPFGH 69
Y LQ P+ TK++T V+ + D +AQK+ + +R L+ G + P H
Sbjct: 11 NSYKKSLQNRPVITKSLTGTVVFFLGDTLAQKIEN-RGYDPKRTLMMCTVGTFIVVPQIH 69
Query: 70 FLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPW 102
F LDK F K + KVV++QLT P+
Sbjct: 70 FWFKFLDKTFT-KPGWAGAIPKVVVDQLTFGPY 101
>sp|Q6DGV7|M17L2_DANRE Mpv17-like protein 2 OS=Danio rerio GN=mpv17l2 PE=2 SV=1
Length = 199
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 23 TKAITAGVLSAISDIVAQ----KLTGIQKLQLRRLLLKVLFGCAYLGPFGHFLHLILDKI 78
T ++ G + A D++ Q + T + R GC+ +GPF H+ + LDK
Sbjct: 29 TNTVSCGGMLAAGDLIQQTREIRRTPGRTRDWSRTGCMFAVGCS-MGPFMHYWYQWLDKY 87
Query: 79 FKGKKDTSTVAKKVVLEQLTSSP 101
F G + V KKV+++QL +SP
Sbjct: 88 FIG-NGINNVCKKVLVDQLVASP 109
>sp|Q7SCY7|SYM1_NEUCR Protein sym-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A
/ CBS 708.71 / DSM 1257 / FGSC 987) GN=sym-1 PE=3 SV=2
Length = 172
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 9 LQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT---GIQKLQLRRLLLKVLFGCAYLG 65
L Y QL PL T+A+T +L + D+ AQ+L G+ L R VL+G A G
Sbjct: 2 LSWYKAQLAARPLLTQAVTTSILFGVGDVAAQQLVDRRGLSNHDLTRTGRMVLYGGAVFG 61
Query: 66 PFG-HFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSP 101
P + + ++ T+ +V +Q +P
Sbjct: 62 PAATTWFRFLQKRVVVPGSTNKTILARVAADQGLFAP 98
>sp|Q6BMY0|SYM1_DEBHA Protein SYM1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767
/ JCM 1990 / NBRC 0083 / IGC 2968) GN=SYM1 PE=3 SV=1
Length = 206
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
Query: 10 QQYLIQLQQHPLRTKAITAGVLSAISDIVAQKL-TGIQKLQLRRLLLKVLFGCAYLGPFG 68
Q+Y + + PL T IT G L D +AQ L K +R L +G P G
Sbjct: 6 QKYSQLIAKRPLITNIITTGFLFGSGDYLAQTLYPSSSKYDYKRTLRATFYGSIIFAPIG 65
Query: 69 HFLHLILDKI---FKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGV 113
+ +L KI F K + TV+K VL LT + L+F + G+
Sbjct: 66 DKWYRLLHKINFPFPKTKVSPTVSK--VLNTLTKVGVDQLVFAPFIGI 111
>sp|Q7YWV6|MPV17_CAEEL Mpv17-like protein OS=Caenorhabditis elegans GN=T18D3.9 PE=3 SV=1
Length = 181
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 15 QLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCAYLGPFGHFLHLI 74
+L +PL T+ AG +S D +AQ L+ Q+ R ++ P +
Sbjct: 10 RLATNPLSTQMCIAGTISGSGDCLAQYLSHNQEWDRWRTARFSFLSSCFMAPSLFIWFRL 69
Query: 75 LDKIFKGKKDTSTVAKKVVLEQLTSSP 101
L+K+ KG + + KK+ ++QL SP
Sbjct: 70 LEKV-KGNNKSLLLVKKLCIDQLCFSP 95
>sp|Q68F62|MP17L_XENLA Mpv17-like protein OS=Xenopus laevis GN=mpv17l PE=2 SV=1
Length = 203
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 13 LIQL-QQHPLRTKAITAGVLSAISDIVAQKL--TGIQKLQLRRLLLKVLFGCAYLGPFGH 69
LIQ ++HP T G L A +DIV QKL + + + ++ L G + F
Sbjct: 4 LIQFTKRHPWLTNVTIYGSLFASADIVQQKLSKSPTEPIDFKQTAKVGLVGFCFHANFNF 63
Query: 70 FLHLILDKIFKGKKDTSTVAKKVVLEQLTSSP 101
F +++ F G + V +KV +QL ++P
Sbjct: 64 FWLRFIERTFPGSAPLN-VIRKVACDQLMAAP 94
>sp|Q754F0|SYM1_ASHGO Protein SYM1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=SYM1 PE=3 SV=1
Length = 182
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
Query: 12 YLIQLQQHPLRTKAITAGVLSAISDIVAQK--LTGIQKLQLRRLLLKVLFGCAYLGPFGH 69
Y LQ HP RT A+T G L + DIVAQ R L L+G G
Sbjct: 8 YKASLQSHPKRTNALTTGFLFGLGDIVAQTQFPEPGASYDPMRTLRPFLYGAVLFSLVGD 67
Query: 70 FLHLILDKIFKGK---KDTSTVAKKVVLEQLTSSP 101
+ L + G+ + V +V +QL +P
Sbjct: 68 KWYRFLSTVRLGRLPQAHWANVLARVACDQLIFAP 102
>sp|Q60SZ2|MPV17_CAEBR Mpv17-like protein (Fragment) OS=Caenorhabditis briggsae
GN=CBG20693 PE=3 SV=2
Length = 181
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 9 LQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCAYLGPFG 68
L+ + L + PL T+ I +G + D Q LTG + +R ++ P
Sbjct: 4 LRTFNATLARRPLATQVIVSGAVCGAGDAFTQYLTGQKSWDYKRTARFTCLAAVFIAPPL 63
Query: 69 HFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMI 109
+ +L+++ + + V ++ ++Q SP+ N + ++
Sbjct: 64 NVWFRVLERV-RHSNRHAQVFSRMSIDQFMFSPFFNAIILV 103
>sp|A8G0R9|AROQ_SHESH 3-dehydroquinate dehydratase OS=Shewanella sediminis (strain
HAW-EB3) GN=aroQ PE=3 SV=1
Length = 151
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 68 GHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGKLILHNIINF 127
GH+ H LD+I K +D ST + VVLE + S+ + L+ I+ E + I+ N F
Sbjct: 24 GHYGHHTLDQIVKELQDEST-SSGVVLEHIQSNAEHELIDAIH---ATEAEFIIINPAAF 79
Query: 128 T 128
T
Sbjct: 80 T 80
>sp|Q4P9K6|SYM1_USTMA Protein SYM1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SYM1
PE=3 SV=1
Length = 199
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
Query: 13 LIQLQQHPLRTKAITAGVLSAISDIVAQKLT---GIQKLQLRRLLLKVLFGCAYLGPFGH 69
LI + +T GVL A D +AQ+L G + R L + GC +
Sbjct: 7 LIAATSSTFPRQCLTGGVLFATGDTIAQQLVEKRGSRHDLARTFRLSLYGGCVFSPLASI 66
Query: 70 FLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGV--VVEG 117
+ +L+++ K + +A KV L+Q +SP +++G ++EG
Sbjct: 67 WFGRVLERVRFSSK-AANIATKVALDQAIASP---AFVALFFGATTIMEG 112
>sp|Q91ZR5|CTSR1_MOUSE Cation channel sperm-associated protein 1 OS=Mus musculus
GN=Catsper1 PE=1 SV=1
Length = 686
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 22/128 (17%)
Query: 8 GLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCAYLGPF 67
GLQQ ++ L Q I V +VAQ T +L++R
Sbjct: 339 GLQQMILSLTQSLGFETFIFIVVCLNTVILVAQTFT---ELEIR---------------- 379
Query: 68 GHFLHLILDKIFKGKKDTSTVAKKVVLE-QLTSSPWNNLMFMIYYGVVVEGKLILHNIIN 126
G + ++LD IF V K + L + PWNNL F I V++ L+ N ++
Sbjct: 380 GEWYFMVLDSIFLSIYVLEAVLKLIALGLEYFYDPWNNLDFFIMVMAVLDFVLLQINSLS 439
Query: 127 FTFGRWNH 134
++F +NH
Sbjct: 440 YSF--YNH 445
>sp|P17689|HBA_MARFO Hemoglobin subunit alpha OS=Martes foina GN=HBA PE=1 SV=1
Length = 141
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 28 AGVLSAISDIVAQKL-TGIQKLQLRRLLLKVLFGCAYLGPFGHFLHLILDKIFK 80
AG LSA+SD+ A KL +L L V C + F +H LDK F
Sbjct: 77 AGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLACHHPAEFTPAVHASLDKFFS 130
>sp|P36009|DHR2_YEAST Probable ATP-dependent RNA helicase DHR2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DHR2 PE=1
SV=1
Length = 735
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 2 GSIAKKGLQQYLIQLQQH--PLRTKAITAGVLSAISDIVA 39
G I K+G Q L+ LQ H + KA G LS + DIV+
Sbjct: 491 GKITKRGQQMALLPLQPHLSSVLIKASEVGCLSQVIDIVS 530
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 54 LLKVLFGCAYLGPF--GHFLHLILDKIFKGKKDTSTVAKKVV 93
+L +L CA+LG G ++H+ +DK KG + S++ ++
Sbjct: 370 MLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLI 411
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.142 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,526,605
Number of Sequences: 539616
Number of extensions: 1585266
Number of successful extensions: 4747
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 4710
Number of HSP's gapped (non-prelim): 37
length of query: 135
length of database: 191,569,459
effective HSP length: 100
effective length of query: 35
effective length of database: 137,607,859
effective search space: 4816275065
effective search space used: 4816275065
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)