Query 032703
Match_columns 135
No_of_seqs 149 out of 932
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 07:25:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032703.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032703hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vqc_A Hypothetical 13.2 kDa p 54.0 4.7 0.00016 25.9 1.2 27 33-59 31-58 (118)
2 1xrd_A LH-1, light-harvesting 46.4 26 0.00089 19.9 3.4 30 47-76 7-42 (52)
3 2ksd_A Aerobic respiration con 23.6 9.2 0.00031 25.4 -1.3 66 9-75 8-76 (115)
4 2qho_B E3 ubiquitin-protein li 22.5 66 0.0022 18.0 2.3 17 114-130 19-35 (53)
5 2cmx_A ORF F-112, F112, hypoth 15.3 50 0.0017 21.4 0.8 25 34-58 32-57 (118)
6 1k3k_A Functional anti-apoptot 14.9 1.2E+02 0.0041 20.8 2.8 23 41-63 75-97 (158)
7 2kua_A BCL-2-like protein 10; 14.5 89 0.0031 21.7 2.1 17 46-62 88-104 (170)
8 2l58_A Activator of apoptosis 13.7 1.5E+02 0.0051 14.7 2.7 19 24-42 9-27 (33)
9 2nl9_A Fusion protein consisti 12.0 1.8E+02 0.006 19.6 3.0 16 47-62 88-103 (157)
10 1rh5_B Preprotein translocase 11.9 2.1E+02 0.0072 17.1 3.0 27 47-73 31-57 (74)
No 1
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=54.05 E-value=4.7 Score=25.86 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=20.5
Q ss_pred HHHHHHHHHHh-ccccchhHHHHHHHHH
Q 032703 33 AISDIVAQKLT-GIQKLQLRRLLLKVLF 59 (135)
Q Consensus 33 ~~gD~laQ~~~-~~~~~D~~R~~~~~~~ 59 (135)
.+-|++||.-. ....|+..|++++.+-
T Consensus 31 sledilaqfeis~~sayniqr~l~~ice 58 (118)
T 2vqc_A 31 TLEDILAQFEISVPSAYNIQRALKAICE 58 (118)
T ss_dssp CHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHheeccchHhHHHHHHHHHHh
Confidence 46799999743 3467999999998764
No 2
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=46.37 E-value=26 Score=19.87 Aligned_cols=30 Identities=20% Similarity=0.155 Sum_probs=21.5
Q ss_pred cchhHHHHHHHHHhhhhhhhhHHHH------HHHhh
Q 032703 47 KLQLRRLLLKVLFGCAYLGPFGHFL------HLILD 76 (135)
Q Consensus 47 ~~D~~R~~~~~~~G~~~~gP~~~~w------y~~L~ 76 (135)
-+|+||++.-.....+..+-..|+- |++||
T Consensus 7 ~fDPrr~Lva~~~fl~vlAl~IHfilLSt~~fNWl~ 42 (52)
T 1xrd_A 7 LFDPRQALVGLATFLFVLALLIHFILLSTERFNWLE 42 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEchhHHHHHHHHHHHHHHHHHHHHhhccCCccccc
Confidence 4799999876666666677777765 56666
No 3
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=23.56 E-value=9.2 Score=25.40 Aligned_cols=66 Identities=14% Similarity=0.227 Sum_probs=41.9
Q ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhc---cccchhHHHHHHHHHhhhhhhhhHHHHHHHh
Q 032703 9 LQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTG---IQKLQLRRLLLKVLFGCAYLGPFGHFLHLIL 75 (135)
Q Consensus 9 ~~~Y~~~l~~~Pl~tk~it~~~l~~~gD~laQ~~~~---~~~~D~~R~~~~~~~G~~~~gP~~~~wy~~L 75 (135)
-+.|-+...|--...-++...++..+-+++-|.... .+++++.-..|-..+|.+ .+|+.-|.+..+
T Consensus 8 aq~yvd~v~rlG~~rfSlL~~~~l~v~A~~~q~~~~~~~~G~v~~~Di~rsI~Fgli-~aP~viYFls~v 76 (115)
T 2ksd_A 8 AQYYVDLMMKLGLVRFSMLLALALVVLAIVVQMAVTMVLHGQVESIDVIRSIFFGLL-ITPWAVYFLSVV 76 (115)
T ss_dssp -------CCCSSTTSSCCSHHHHHHHHHHHHHHHHHHHSCCCSSSSSCCSTTTHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHhhhhcccchHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 345555555555555566667777777888887652 356666666667788886 999999888654
No 4
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=22.47 E-value=66 Score=18.01 Aligned_cols=17 Identities=24% Similarity=0.110 Sum_probs=14.8
Q ss_pred HhcCCCHHHHHHHHhcc
Q 032703 114 VVEGKLILHNIINFTFG 130 (135)
Q Consensus 114 ~leg~~~~~~~~~lr~~ 130 (135)
+|+|||-+-|+.++++.
T Consensus 19 VLqgksR~vIirELqrT 35 (53)
T 2qho_B 19 VLQGKSRSVIIRELQRT 35 (53)
T ss_dssp HSTTCCHHHHHHHHHHT
T ss_pred HhcCCcHHHHHHHHHHh
Confidence 89999999999988864
No 5
>2cmx_A ORF F-112, F112, hypothetical 13.2 kDa protein; sulfolobus spindle virus, thermophilic protein, hypothetical protein; 2.30A {Sulfolobus virus-like particle SSV1} PDB: 2vqc_A
Probab=15.28 E-value=50 Score=21.42 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=15.9
Q ss_pred HHHHHHHHHh-ccccchhHHHHHHHH
Q 032703 34 ISDIVAQKLT-GIQKLQLRRLLLKVL 58 (135)
Q Consensus 34 ~gD~laQ~~~-~~~~~D~~R~~~~~~ 58 (135)
+-|++||.=. ....+...|++|+.+
T Consensus 32 ~eDIlaqfeIS~s~Ay~I~~~lk~iC 57 (118)
T 2cmx_A 32 LEDILAQFEISVPSAYNIQRALKAIC 57 (118)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhhhHHHHHHHHHH
Confidence 5688888633 234577777777765
No 6
>1k3k_A Functional anti-apoptotic factor VBCL-2 homolog; solution structure, apoptosis; NMR {Human herpesvirus 8} SCOP: f.1.4.1
Probab=14.92 E-value=1.2e+02 Score=20.77 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=17.8
Q ss_pred HHhccccchhHHHHHHHHHhhhh
Q 032703 41 KLTGIQKLQLRRLLLKVLFGCAY 63 (135)
Q Consensus 41 ~~~~~~~~D~~R~~~~~~~G~~~ 63 (135)
.+.++..++|.|.+.+..||+.+
T Consensus 75 elF~DG~iNWGRIVaLfaF~g~l 97 (158)
T 1k3k_A 75 QVSGDGNMNWGRALAILTFGSFV 97 (158)
T ss_dssp HHCSSCSCCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHH
Confidence 33354679999999999998873
No 7
>2kua_A BCL-2-like protein 10; BOO, DIVA, apoptosis, BH3-only, membrane, mitochondri nucleus, transmembrane; NMR {Mus musculus}
Probab=14.50 E-value=89 Score=21.68 Aligned_cols=17 Identities=18% Similarity=0.378 Sum_probs=13.6
Q ss_pred ccchhHHHHHHHHHhhh
Q 032703 46 QKLQLRRLLLKVLFGCA 62 (135)
Q Consensus 46 ~~~D~~R~~~~~~~G~~ 62 (135)
..++|.|.+.+..||+.
T Consensus 88 g~iNWGRIVaLfaF~g~ 104 (170)
T 2kua_A 88 QDFSWSQLVMLLAFAGT 104 (170)
T ss_dssp SCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 36889998888888875
No 8
>2l58_A Activator of apoptosis harakiri; BCL-2, BH3-only, intrinsically disorder protein; NMR {Synthetic}
Probab=13.71 E-value=1.5e+02 Score=14.72 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032703 24 KAITAGVLSAISDIVAQKL 42 (135)
Q Consensus 24 k~it~~~l~~~gD~laQ~~ 42 (135)
.-+|+.-+-++||-+.|+-
T Consensus 9 aqlta~rlkalgdel~~rt 27 (33)
T 2l58_A 9 AQLTAARLKALGDELHQRT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3578889999999998864
No 9
>2nl9_A Fusion protein consisting of induced myeloid LEUK differentiation protein MCL-1 homolog...; apoptosis, MCL-1, BIM; HET: MSE; 1.55A {Rattus norvegicus} PDB: 2nla_A 3d7v_A 3io9_A 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 1wsx_A 2jm6_B 2roc_A 2rod_A 2kbw_A 3mk8_B
Probab=11.96 E-value=1.8e+02 Score=19.59 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=13.2
Q ss_pred cchhHHHHHHHHHhhh
Q 032703 47 KLQLRRLLLKVLFGCA 62 (135)
Q Consensus 47 ~~D~~R~~~~~~~G~~ 62 (135)
..+|.|.+.+..||+.
T Consensus 88 i~nWGRIValf~F~~~ 103 (157)
T 2nl9_A 88 VTNWGRIVTLISFGAF 103 (157)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHH
Confidence 3589999999988875
No 10
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=11.93 E-value=2.1e+02 Score=17.12 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=21.4
Q ss_pred cchhHHHHHHHHHhhhhhhhhHHHHHH
Q 032703 47 KLQLRRLLLKVLFGCAYLGPFGHFLHL 73 (135)
Q Consensus 47 ~~D~~R~~~~~~~G~~~~gP~~~~wy~ 73 (135)
.=++.+.++.+..|.++.|-+.+.-+-
T Consensus 31 r~EF~~iak~~~iG~~imG~IGfiIkl 57 (74)
T 1rh5_B 31 KDEYLAVAKVTALGISLLGIIGYIIHV 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999988876553
Done!