Query 032703
Match_columns 135
No_of_seqs 149 out of 932
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 07:25:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032703.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032703hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vqca1 a.4.5.78 (A:4-73) F-11 68.5 0.9 6.5E-05 25.3 1.2 26 33-58 22-48 (70)
2 d1xrda1 f.3.1.1 (A:1-52) Light 54.5 7.8 0.00057 20.6 3.4 30 47-76 7-42 (52)
3 d1k3ka_ f.1.4.1 (A:) Bcl-2 hom 20.6 95 0.0069 19.4 5.1 28 34-62 69-96 (146)
4 d3ct6a1 c.54.1.2 (A:1-123) PTS 19.6 62 0.0045 19.6 3.8 33 98-131 88-120 (123)
5 d2v9va1 a.4.5.35 (A:377-437) C 18.6 36 0.0026 17.8 2.0 20 36-55 5-25 (61)
6 d1ppjj_ f.23.14.1 (J:) Subunit 17.0 15 0.0011 17.6 0.2 16 114-129 17-32 (33)
7 d1ofcx1 a.4.1.3 (X:799-850) SA 15.0 13 0.00094 19.7 -0.4 19 114-133 28-46 (52)
8 d3cx5i1 f.23.14.1 (I:4-58) Sub 12.0 1.1E+02 0.0076 16.1 2.9 23 10-32 2-24 (55)
9 d2g7la2 a.121.1.1 (A:87-230) P 11.9 99 0.0072 18.3 3.3 47 4-51 6-57 (144)
10 d1khda1 a.46.2.1 (A:12-80) Ant 11.9 1.1E+02 0.0081 16.0 4.7 51 72-125 3-56 (69)
No 1
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=68.49 E-value=0.9 Score=25.31 Aligned_cols=26 Identities=23% Similarity=0.232 Sum_probs=19.8
Q ss_pred HHHHHHHHHHh-ccccchhHHHHHHHH
Q 032703 33 AISDIVAQKLT-GIQKLQLRRLLLKVL 58 (135)
Q Consensus 33 ~~gD~laQ~~~-~~~~~D~~R~~~~~~ 58 (135)
.+-|++||.-. ....++..|++++.+
T Consensus 22 ~ledilaqfeis~~~ayniqr~l~~ic 48 (70)
T d2vqca1 22 TLEDILAQFEISVPSAYNIQRALKAIC 48 (70)
T ss_dssp CHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHheeccchHhHHHHHHHHHH
Confidence 36799999743 346799999999875
No 2
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=54.49 E-value=7.8 Score=20.65 Aligned_cols=30 Identities=20% Similarity=0.155 Sum_probs=21.5
Q ss_pred cchhHHHHHHHHHhhhhhhhhHHHH------HHHhh
Q 032703 47 KLQLRRLLLKVLFGCAYLGPFGHFL------HLILD 76 (135)
Q Consensus 47 ~~D~~R~~~~~~~G~~~~gP~~~~w------y~~L~ 76 (135)
-+|+||++.-.....+..+-..|+- |++||
T Consensus 7 ~fDPRr~lva~~~fL~~LAl~IHfiLLSt~rfNWle 42 (52)
T d1xrda1 7 LFDPRQALVGLATFLFVLALLIHFILLSTERFNWLE 42 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHhccCcccccc
Confidence 4799999877666666677777765 56665
No 3
>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=20.58 E-value=95 Score=19.39 Aligned_cols=28 Identities=21% Similarity=0.207 Sum_probs=19.8
Q ss_pred HHHHHHHHHhccccchhHHHHHHHHHhhh
Q 032703 34 ISDIVAQKLTGIQKLQLRRLLLKVLFGCA 62 (135)
Q Consensus 34 ~gD~laQ~~~~~~~~D~~R~~~~~~~G~~ 62 (135)
.+.++.+.+ ++...+|.|.+.+..||+.
T Consensus 69 f~~V~~elF-~DG~~NWGRIVaLfaFg~~ 96 (146)
T d1k3ka_ 69 LGLSMLQVS-GDGNMNWGRALAILTFGSF 96 (146)
T ss_dssp HHTHHHHHC-SSCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCCCHHHHHHHHHHHHH
Confidence 345544443 3366799999999999876
No 4
>d3ct6a1 c.54.1.2 (A:1-123) PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM {Lactococcus lactis [TaxId: 1358]}
Probab=19.58 E-value=62 Score=19.62 Aligned_cols=33 Identities=6% Similarity=-0.189 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhccc
Q 032703 98 TSSPWNNLMFMIYYGVVVEGKLILHNIINFTFGR 131 (135)
Q Consensus 98 i~~P~~~~~f~~~~~~~leg~~~~~~~~~lr~~~ 131 (135)
+-+|+.-..+-+... ...|.+++++.+++++..
T Consensus 88 i~~p~tegal~Aa~~-a~~g~~leeI~~~~~~~~ 120 (123)
T d3ct6a1 88 FNVPLIEGAYTASAL-LEAGATFEAIKEQLEKML 120 (123)
T ss_dssp CCSCHHHHHHHHHHH-HHTTCCHHHHHHHHGGGC
T ss_pred EcCchHHHHHHHHHH-HhCCCCHHHHHHHHHHhh
Confidence 457777778888888 889999999999998754
No 5
>d2v9va1 a.4.5.35 (A:377-437) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=18.58 E-value=36 Score=17.76 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=14.4
Q ss_pred HHHHHHHh-ccccchhHHHHH
Q 032703 36 DIVAQKLT-GIQKLQLRRLLL 55 (135)
Q Consensus 36 D~laQ~~~-~~~~~D~~R~~~ 55 (135)
.++||.++ .++..||.....
T Consensus 5 kilaqiiqehregldwqeaat 25 (61)
T d2v9va1 5 KILAQIIQEHREGLDWQEAAT 25 (61)
T ss_dssp HHHHHHHHHCSSCEEHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHH
Confidence 47899986 467788876543
No 6
>d1ppjj_ f.23.14.1 (J:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.97 E-value=15 Score=17.64 Aligned_cols=16 Identities=31% Similarity=0.335 Sum_probs=12.4
Q ss_pred HhcCCCHHHHHHHHhc
Q 032703 114 VVEGKLILHNIINFTF 129 (135)
Q Consensus 114 ~leg~~~~~~~~~lr~ 129 (135)
+-+|+-|.+|+.++.+
T Consensus 17 ~NkGklWKdIkhkYe~ 32 (33)
T d1ppjj_ 17 INEGKLWKHIKHKYEN 32 (33)
T ss_dssp HTTTTSHHHHGGGTC-
T ss_pred hcccchHHHHHHHhcc
Confidence 5589999999887765
No 7
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=15.04 E-value=13 Score=19.74 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=12.1
Q ss_pred HhcCCCHHHHHHHHhcccCC
Q 032703 114 VVEGKLILHNIINFTFGRWN 133 (135)
Q Consensus 114 ~leg~~~~~~~~~lr~~~w~ 133 (135)
-++|||.+| ++++-+-||.
T Consensus 28 e~~~Kt~eE-V~~Y~~vFw~ 46 (52)
T d1ofcx1 28 DVEGKTPEE-VIEYNAVFWE 46 (52)
T ss_dssp SSTTCCHHH-HHHHHHHHHH
T ss_pred HhcCCCHHH-HHHHHHHHHH
Confidence 356888777 4556556664
No 8
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.04 E-value=1.1e+02 Score=16.07 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=14.9
Q ss_pred HHHHHHHhhCchHHHHHHHHHHH
Q 032703 10 QQYLIQLQQHPLRTKAITAGVLS 32 (135)
Q Consensus 10 ~~Y~~~l~~~Pl~tk~it~~~l~ 32 (135)
.-|+..++|+....-++.+|.++
T Consensus 2 tiY~~lfrRnSv~~~tI~~gAf~ 24 (55)
T d3cx5i1 2 SLYKTFFKRNAVFVGTIFAGAFV 24 (55)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHH
T ss_pred hHHHHHHHhhhHHHHHHHHHHHH
Confidence 35777777777666666655543
No 9
>d2g7la2 a.121.1.1 (A:87-230) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=11.94 E-value=99 Score=18.27 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhhCchHHHHHHHH-----HHHHHHHHHHHHHhccccchhH
Q 032703 4 IAKKGLQQYLIQLQQHPLRTKAITAG-----VLSAISDIVAQKLTGIQKLQLR 51 (135)
Q Consensus 4 ~~~~~~~~Y~~~l~~~Pl~tk~it~~-----~l~~~gD~laQ~~~~~~~~D~~ 51 (135)
-++.+...|.+.+.+||-+...+.+. .....-|-+.+.+.+ ..++..
T Consensus 6 ~Lr~~a~~~r~~l~~HP~~~~l~~~~~~~~p~~l~~~e~~l~~L~~-aG~~~~ 57 (144)
T d2g7la2 6 QLRAVLTSYTLVLFAHPQLARSALVARPSGENYLRLVERVLELLAR-SGAPGA 57 (144)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHSCCCSHHHHHHHHHHHHHHHT-TCCCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHhcCCCCcccHHHHHHHHHHHHHH-cCCCHH
Confidence 35678899999999999887766533 234456666666654 334333
No 10
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Probab=11.87 E-value=1.1e+02 Score=15.99 Aligned_cols=51 Identities=14% Similarity=0.123 Sum_probs=34.8
Q ss_pred HHHhhhhccCCCCHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhcCCCHHHHHH
Q 032703 72 HLILDKIFKGKKDTSTVAKKVVLEQLT---SSPWNNLMFMIYYGVVVEGKLILHNII 125 (135)
Q Consensus 72 y~~L~~~~~~~~~~~~~~~Kv~~DQ~i---~~P~~~~~f~~~~~~~leg~~~~~~~~ 125 (135)
-..++++..+ .++..-=.+-++|+++ .++.-...|+..+. ..|.+.+|+..
T Consensus 3 ~~il~kl~~g-~~Ls~ee~~~~~~~i~~g~~~d~qiaafL~al~--~kg~t~dEi~g 56 (69)
T d1khda1 3 QPILEKLFKS-QSMTQEESHQLFAAIVRGELEDSQLAAALISMK--MRGERPEEIAG 56 (69)
T ss_dssp HHHHHHHHTT-CCCCHHHHHHHHHHHTTTCSCHHHHHHHHHHHH--HHCCCHHHHHH
T ss_pred HHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HhCCCHHHHHH
Confidence 3467777766 4554445566666665 35677888888864 78999888754
Done!