Query 032704
Match_columns 135
No_of_seqs 128 out of 1169
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 07:27:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032704.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032704hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_W Ribosomal protein L24; 100.0 1.2E-52 4E-57 333.8 -3.3 132 1-133 1-132 (191)
2 3v2d_Y 50S ribosomal protein L 99.9 8.4E-26 2.9E-30 166.2 7.2 68 66-133 3-70 (110)
3 2zjr_R 50S ribosomal protein L 99.9 1.8E-25 6.2E-30 165.2 3.8 71 63-133 9-79 (115)
4 3r8s_U 50S ribosomal protein L 99.9 1.5E-24 5.1E-29 157.6 7.5 65 68-133 2-67 (102)
5 2ftc_N Mitochondrial ribosomal 99.9 4.9E-23 1.7E-27 148.1 7.3 60 73-133 1-60 (96)
6 1vq8_T 50S ribosomal protein L 99.7 1.2E-18 4.1E-23 129.8 5.0 57 66-133 39-95 (120)
7 3j21_U 50S ribosomal protein L 99.7 2.3E-18 7.8E-23 128.4 3.9 63 54-133 36-98 (121)
8 3u5e_Y L33, YL33, 60S ribosoma 99.7 7.1E-18 2.4E-22 126.8 3.8 64 53-133 39-102 (127)
9 4a17_S RPL26, 60S ribosomal pr 99.7 1.4E-17 4.9E-22 126.3 4.0 64 53-133 38-101 (135)
10 3iz5_Y 60S ribosomal protein L 99.7 1.6E-17 5.5E-22 127.9 3.0 63 54-133 39-101 (150)
11 2zkr_t 60S ribosomal protein L 99.7 3.4E-17 1.2E-21 125.4 4.6 56 67-133 46-102 (145)
12 1nz9_A Transcription antitermi 98.3 7.5E-07 2.6E-11 57.0 4.1 36 68-103 3-38 (58)
13 2e6z_A Transcription elongatio 97.5 2.7E-05 9.2E-10 50.5 1.6 37 67-103 5-41 (59)
14 3p8b_B Transcription antitermi 97.5 9.3E-05 3.2E-09 54.8 4.7 36 68-103 90-125 (152)
15 2jvv_A Transcription antitermi 97.5 8.9E-05 3E-09 56.1 4.5 37 67-103 125-161 (181)
16 2do3_A Transcription elongatio 97.3 0.00046 1.6E-08 46.9 5.2 45 69-114 17-61 (69)
17 2ckk_A KIN17; beta barrel, rib 96.9 0.0012 4E-08 48.8 4.6 33 71-103 72-104 (127)
18 2xhc_A Transcription antitermi 96.4 0.0031 1E-07 53.4 4.8 37 67-103 296-332 (352)
19 1m1h_A Transcription antitermi 96.2 0.00082 2.8E-08 54.5 0.0 37 67-103 192-228 (248)
20 4a18_F RPL14; ribosome, eukary 93.2 0.16 5.5E-06 37.8 5.5 41 70-112 7-47 (126)
21 3iz5_N 60S ribosomal protein L 93.1 0.08 2.7E-06 39.8 3.8 36 70-106 7-42 (134)
22 2joy_A 50S ribosomal protein L 92.5 0.067 2.3E-06 37.6 2.4 36 70-106 4-39 (96)
23 3izc_N 60S ribosomal protein R 91.6 0.11 3.9E-06 39.1 2.9 36 70-106 15-50 (138)
24 4a18_N RPL27, ribosomal protei 91.2 0.23 7.9E-06 37.8 4.3 41 70-110 5-51 (144)
25 3j21_5 50S ribosomal protein L 90.8 0.11 3.9E-06 35.7 2.0 36 70-106 4-39 (83)
26 2e70_A Transcription elongatio 90.3 0.31 1.1E-05 33.0 3.8 31 71-103 19-49 (71)
27 1qp2_A Protein (PSAE protein); 88.2 0.39 1.3E-05 32.7 3.1 38 70-107 2-45 (70)
28 3iz6_D 40S ribosomal protein S 84.0 1.1 3.8E-05 36.9 4.4 41 66-106 171-214 (265)
29 3j20_E 30S ribosomal protein S 83.7 0.94 3.2E-05 36.9 3.8 41 66-106 175-219 (243)
30 2xzm_W 40S ribosomal protein S 82.6 1.8 6.2E-05 35.6 5.1 39 67-105 174-215 (260)
31 2oug_A Transcriptional activat 80.0 0.0036 1.2E-07 46.1 -10.8 30 68-97 108-137 (162)
32 3kbg_A 30S ribosomal protein S 78.2 1.6 5.6E-05 34.8 3.3 38 66-103 135-176 (213)
33 3u5c_E RP5, S7, YS6, 40S ribos 77.4 1.1 3.7E-05 36.9 2.2 41 66-106 171-214 (261)
34 3bbo_X Ribosomal protein L27; 76.8 0.51 1.7E-05 37.6 0.0 24 4-27 8-32 (198)
35 1jb0_E Photosystem 1 reaction 73.4 3.7 0.00013 28.1 3.7 27 70-96 1-29 (75)
36 2jz2_A SSL0352 protein; SH3-li 67.3 6.2 0.00021 26.4 3.6 40 70-109 2-43 (66)
37 1at0_A 17-hedgehog; developmen 66.2 7.8 0.00027 28.0 4.4 29 66-94 88-117 (145)
38 4a17_P RPL21, 60S ribosomal pr 65.8 4.2 0.00014 31.2 2.9 47 69-115 33-99 (157)
39 1zuy_A Myosin-5 isoform; SH3 d 64.2 6.6 0.00023 23.1 3.1 18 66-83 16-33 (58)
40 4he6_A Peptidase family U32; u 63.9 13 0.00044 24.5 4.8 29 66-94 26-54 (89)
41 2g6f_X RHO guanine nucleotide 60.6 5.5 0.00019 23.8 2.3 17 66-82 19-35 (59)
42 2ew3_A SH3-containing GRB2-lik 59.7 5.6 0.00019 24.9 2.3 18 66-83 18-35 (68)
43 4a18_E RPL6; ribosome, eukaryo 59.2 7.5 0.00025 30.7 3.3 35 69-104 44-78 (191)
44 1zuu_A BZZ1 protein; SH3 domai 59.1 8.3 0.00028 22.8 2.9 18 66-83 16-33 (58)
45 2eqm_A PHD finger protein 20-l 58.1 25 0.00087 23.8 5.6 37 66-102 16-52 (88)
46 1uti_A GRB2-related adaptor pr 57.8 6.6 0.00022 23.3 2.3 17 66-82 16-32 (58)
47 1vhy_A Hypothetical protein HI 57.1 8.5 0.00029 30.5 3.4 38 66-103 32-69 (257)
48 2a28_A BZZ1 protein; SH3 domai 56.8 13 0.00045 21.6 3.5 17 66-82 15-31 (54)
49 4e8b_A Ribosomal RNA small sub 56.3 9.2 0.00032 30.1 3.5 36 67-102 31-66 (251)
50 2ak5_A RHO guanine nucleotide 56.1 7.1 0.00024 23.6 2.3 18 66-83 21-38 (64)
51 2vwf_A Growth factor receptor- 55.9 7.4 0.00025 23.0 2.3 17 66-82 17-33 (58)
52 2xmf_A Myosin 1E SH3; motor pr 55.8 7.4 0.00025 23.3 2.3 17 66-82 20-36 (60)
53 2bzy_A CRK-like protein, CRKL 55.5 7.3 0.00025 24.0 2.3 18 66-83 18-35 (67)
54 1ruw_A Myosin-3 isoform, MYO3; 55.5 11 0.00037 23.1 3.1 18 66-83 18-35 (69)
55 3iz5_U 60S ribosomal protein L 54.8 4.6 0.00016 31.2 1.4 47 69-115 33-99 (164)
56 2gnc_A SLIT-ROBO RHO GTPase-ac 54.6 7.9 0.00027 23.2 2.3 16 66-81 21-36 (60)
57 2ege_A Uncharacterized protein 54.5 17 0.00058 22.9 4.0 15 66-80 29-43 (75)
58 2d8h_A SH3YL1 protein; SH3 dom 54.4 15 0.00051 23.2 3.7 18 66-83 32-49 (80)
59 2x3w_D Syndapin I, protein kin 53.8 9.8 0.00034 22.6 2.6 16 66-81 18-33 (60)
60 1w70_A Neutrophil cytosol fact 53.7 8.3 0.00028 23.1 2.3 18 66-83 19-36 (60)
61 3c0c_A Endophilin-A2; endocyto 53.6 8.1 0.00028 24.2 2.3 18 66-83 28-45 (73)
62 1sem_A SEM-5; SRC-homology 3 ( 53.6 15 0.00052 21.5 3.4 17 66-82 17-33 (58)
63 4a4f_A SurviVal of motor neuro 53.4 25 0.00085 22.1 4.6 36 67-102 6-42 (64)
64 1x2k_A OSTF1, osteoclast stimu 53.4 9.3 0.00032 23.5 2.5 17 66-82 22-38 (68)
65 2yuo_A CIP85, RUN and TBC1 dom 53.4 8.1 0.00028 24.4 2.3 16 66-81 22-37 (78)
66 2ebp_A SAM and SH3 domain-cont 53.1 22 0.00076 22.3 4.4 18 66-83 26-43 (73)
67 3kw2_A Probable R-RNA methyltr 52.6 11 0.00037 30.0 3.3 36 67-102 30-65 (257)
68 2epd_A RHO GTPase-activating p 52.6 9.5 0.00033 24.1 2.5 16 66-81 25-40 (76)
69 2dl8_A SLIT-ROBO RHO GTPase-ac 52.1 8.8 0.0003 23.9 2.2 16 66-81 24-39 (72)
70 1vhk_A Hypothetical protein YQ 51.8 12 0.00042 29.8 3.5 35 66-100 33-67 (268)
71 2dl3_A Sorbin and SH3 domain-c 51.7 11 0.00037 23.0 2.6 17 66-82 22-38 (68)
72 1zx6_A YPR154WP; SH3 domain, p 51.5 9.6 0.00033 22.6 2.3 17 66-82 17-33 (58)
73 2eyx_A V-CRK sarcoma virus CT1 51.5 7.3 0.00025 24.0 1.8 16 67-82 24-39 (67)
74 2iim_A Proto-oncogene tyrosine 51.3 11 0.00039 22.5 2.6 16 66-81 21-36 (62)
75 1gcq_C VAV proto-oncogene; SH3 51.1 17 0.00058 22.2 3.4 15 67-81 26-40 (70)
76 1z85_A Hypothetical protein TM 51.0 11 0.00039 29.6 3.2 37 66-102 37-73 (234)
77 1k1z_A VAV; SH3, proto-oncogen 51.0 16 0.00054 23.0 3.4 17 66-82 33-49 (78)
78 1j3t_A Intersectin 2; beta bar 50.4 8.2 0.00028 24.2 1.9 15 67-81 26-40 (74)
79 3udc_A Small-conductance mecha 50.2 11 0.00038 29.8 3.0 22 69-95 128-149 (285)
80 3eg3_A Proto-oncogene tyrosine 49.8 10 0.00035 22.5 2.2 15 66-80 20-34 (63)
81 1jo8_A ABP1P, actin binding pr 49.8 18 0.00061 21.3 3.3 17 66-82 15-31 (58)
82 1csk_A C-SRC SH3 domain; phosp 49.7 12 0.00041 23.1 2.6 15 66-80 26-40 (71)
83 2ftc_K 39S ribosomal protein L 48.7 47 0.0016 23.4 5.8 27 70-96 4-36 (98)
84 3iz5_G 60S ribosomal protein L 48.2 7.2 0.00025 31.4 1.6 35 69-104 74-108 (219)
85 2oi3_A Tyrosine-protein kinase 48.2 36 0.0012 21.5 4.8 17 66-82 40-56 (86)
86 3izc_U 60S ribosomal protein R 47.9 11 0.00036 29.0 2.5 47 69-115 33-99 (160)
87 2ydl_A SH3 domain-containing k 47.8 11 0.00039 23.6 2.3 16 66-81 17-32 (69)
88 1vq8_Q 50S ribosomal protein L 47.6 22 0.00077 25.0 4.0 38 69-106 33-80 (96)
89 3sd4_A PHD finger protein 20; 47.3 41 0.0014 21.4 5.0 36 67-102 10-45 (69)
90 2lcs_A NAP1-binding protein 2; 47.1 14 0.00047 23.4 2.6 17 66-82 20-36 (73)
91 1w1f_A Tyrosine-protein kinase 47.1 11 0.00037 22.7 2.0 16 66-81 22-37 (65)
92 2eqj_A Metal-response element- 47.0 38 0.0013 22.5 4.8 35 69-103 13-47 (66)
93 2ysq_A RHO guanine nucleotide 46.3 13 0.00043 23.7 2.3 16 67-82 26-41 (81)
94 2zzd_A Thiocyanate hydrolase s 46.3 16 0.00055 27.0 3.2 29 66-94 33-71 (126)
95 2k9g_A SH3 domain-containing k 45.8 13 0.00043 23.1 2.3 17 66-82 24-40 (73)
96 1uhc_A KIAA1010 protein; beta 45.1 21 0.00073 22.5 3.3 18 66-83 28-45 (79)
97 1yn8_A NBP2, NAP1-binding prot 45.1 13 0.00044 21.9 2.1 16 66-81 16-31 (59)
98 2dl7_A KIAA0769 protein; SH3 d 44.6 14 0.00046 23.0 2.3 16 66-81 23-38 (73)
99 3j21_R 50S ribosomal protein L 44.6 31 0.0011 24.2 4.3 36 69-104 34-79 (97)
100 3dcl_A TM1086; SAD, structural 44.5 31 0.0011 28.7 4.9 32 72-103 86-117 (284)
101 1uhf_A Intersectin 2; beta bar 44.0 14 0.00047 22.8 2.2 15 66-80 23-37 (69)
102 1oot_A Hypothetical 40.4 kDa p 44.0 27 0.00091 20.6 3.5 17 66-82 18-34 (60)
103 3qyh_B CO-type nitrIle hydrata 43.3 18 0.00061 28.7 3.2 29 66-94 127-165 (219)
104 1v6z_A Hypothetical protein TT 43.1 22 0.00077 27.5 3.7 35 67-103 26-60 (228)
105 1b07_A Protein (proto-oncogene 43.1 24 0.00083 21.6 3.3 17 66-82 18-34 (65)
106 2oqk_A Putative translation in 43.0 23 0.00078 25.2 3.5 55 43-97 36-98 (117)
107 1mhn_A SurviVal motor neuron p 42.7 45 0.0015 20.4 4.5 33 70-102 4-37 (59)
108 2enm_A Sorting nexin-9; SH3-li 42.7 24 0.00083 22.0 3.3 17 66-82 25-41 (77)
109 2v1r_A Peroxisomal membrane pr 41.2 19 0.00065 22.6 2.6 16 67-82 31-46 (80)
110 2l0a_A STAM-1, signal transduc 41.1 14 0.0005 23.5 2.0 16 66-81 32-47 (72)
111 2dl5_A KIAA0769 protein; SH3 d 41.1 22 0.00076 22.4 2.9 18 66-83 28-45 (78)
112 1x69_A Cortactin isoform A; SH 41.1 15 0.00053 23.2 2.1 17 66-82 32-48 (79)
113 2jt4_A Cytoskeleton assembly c 40.9 28 0.00096 21.2 3.3 17 66-82 21-37 (71)
114 2jte_A CD2-associated protein; 40.9 31 0.0011 20.6 3.4 16 66-81 21-36 (64)
115 2dlp_A KIAA1783 protein; SH3 d 40.9 13 0.00046 23.9 1.8 15 66-80 23-37 (85)
116 1nm7_A Peroxisomal membrane pr 40.8 19 0.00064 22.9 2.5 16 67-82 24-39 (69)
117 2dmo_A Neutrophil cytosol fact 40.6 13 0.00043 22.9 1.6 18 66-83 22-39 (68)
118 2da9_A SH3-domain kinase bindi 40.5 15 0.00052 22.5 2.0 16 66-81 22-37 (70)
119 2egv_A UPF0088 protein AQ_165; 40.4 14 0.00047 28.7 2.1 34 66-100 25-58 (229)
120 1ugp_B NitrIle hydratase beta 40.1 20 0.00068 28.6 3.0 29 66-94 135-173 (226)
121 2dbm_A SH3-containing GRB2-lik 39.8 9.9 0.00034 23.7 1.0 18 66-83 22-39 (73)
122 2ega_A SH3 and PX domain-conta 39.8 11 0.00039 23.1 1.3 17 66-82 23-39 (70)
123 2csi_A RIM-BP2, RIM binding pr 39.8 25 0.00086 22.0 3.0 18 66-83 29-46 (76)
124 2fei_A CD2-associated protein; 39.7 11 0.00037 23.4 1.2 16 66-81 16-31 (65)
125 1jqq_A PEX13P, peroxisomal mem 39.6 20 0.00069 23.2 2.6 17 67-83 31-47 (92)
126 2vkn_A Protein SSU81; membrane 39.4 24 0.00084 21.6 2.8 14 67-80 23-36 (70)
127 1wxt_A Hypothetical protein FL 39.2 22 0.00074 21.8 2.6 16 66-81 22-37 (68)
128 2dgy_A MGC11102 protein; EIF-1 38.9 25 0.00086 25.0 3.2 32 66-97 50-82 (111)
129 2zkr_q 60S ribosomal protein L 38.8 7.8 0.00027 29.8 0.4 47 69-115 33-99 (160)
130 1u5s_A Cytoplasmic protein NCK 38.7 20 0.00068 21.9 2.3 16 66-81 21-36 (71)
131 1x6g_A Megakaryocyte-associate 38.6 30 0.001 22.0 3.3 16 67-82 33-48 (81)
132 1gbq_A GRB2; complex (signal t 38.6 20 0.00067 22.4 2.3 17 66-82 24-40 (74)
133 1jt8_A EIF-1A, probable transl 38.5 16 0.00054 25.8 2.0 31 67-97 56-87 (102)
134 2v1q_A SLA1, cytoskeleton asse 38.4 34 0.0012 20.0 3.3 16 66-81 17-32 (60)
135 1gxi_E Photosystem I reaction 38.2 6.5 0.00022 26.8 -0.1 28 70-97 2-31 (73)
136 1dj7_B Ferredoxin thioredoxin 38.1 20 0.00069 24.4 2.4 26 71-96 2-41 (75)
137 2k52_A Uncharacterized protein 37.9 43 0.0015 21.3 4.0 25 69-103 45-69 (80)
138 2csq_A RIM-BP2, RIM binding pr 37.8 33 0.0011 22.6 3.5 15 66-80 40-54 (97)
139 1d7q_A Translation initiation 37.8 31 0.0011 25.8 3.7 33 66-98 66-98 (143)
140 2bz8_A SH3-domain kinase bindi 37.2 24 0.00082 20.8 2.5 18 66-83 16-33 (58)
141 3hht_B NitrIle hydratase beta 37.2 19 0.00065 28.8 2.5 28 67-94 139-176 (229)
142 2yuq_A Tyrosine-protein kinase 37.1 26 0.0009 22.4 2.8 18 66-83 34-51 (85)
143 4hcz_A PHD finger protein 1; p 36.9 75 0.0026 20.6 4.9 35 69-103 3-37 (58)
144 1whl_A Cylindromatosis tumor s 36.8 28 0.00097 23.9 3.1 27 69-95 7-34 (95)
145 2rf0_A Mitogen-activated prote 36.8 24 0.00083 23.3 2.7 16 66-81 44-59 (89)
146 1wx6_A Cytoplasmic protein NCK 36.5 33 0.0011 22.1 3.2 16 66-81 32-47 (91)
147 2vv5_A MSCS, small-conductance 36.5 16 0.00054 29.0 1.9 35 69-108 129-171 (286)
148 1i07_A Epidermal growth factor 36.5 18 0.0006 21.5 1.8 16 66-81 16-31 (60)
149 2k2m_A EPS8-like protein 1; al 36.4 30 0.001 21.2 2.9 16 66-81 23-38 (68)
150 4b6m_A Tubulin-specific chaper 36.3 33 0.0011 23.4 3.3 24 69-95 5-28 (84)
151 1wxb_A Epidermal growth factor 35.9 26 0.00091 21.4 2.6 15 66-80 22-36 (68)
152 2i0n_A Class VII unconventiona 35.7 25 0.00087 22.3 2.5 20 66-85 25-44 (80)
153 2b86_A Cytoplasmic protein NCK 35.7 19 0.00065 22.5 1.9 16 66-81 19-34 (67)
154 2ct4_A CDC42-interacting prote 35.4 36 0.0012 20.7 3.2 17 66-82 22-38 (70)
155 3izc_a 60S ribosomal protein R 34.7 2 6.7E-05 32.4 -3.4 41 70-110 5-51 (136)
156 1ugv_A KIAA0621, olygophrenin- 34.2 11 0.00037 23.6 0.5 15 66-80 25-39 (72)
157 1t9h_A YLOQ, probable GTPase E 34.1 56 0.0019 26.3 4.9 39 69-109 50-91 (307)
158 3mea_A SAGA-associated factor 34.0 54 0.0018 25.3 4.5 41 66-106 41-85 (180)
159 2m0y_A Dedicator of cytokinesi 33.9 30 0.001 21.2 2.6 16 66-81 26-41 (74)
160 2cuc_A SH3 domain containing r 33.6 31 0.0011 20.9 2.6 16 66-81 22-37 (70)
161 3s6w_A Tudor domain-containing 33.5 40 0.0014 20.1 3.1 34 70-103 2-36 (54)
162 1k4u_S Phagocyte NADPH oxidase 33.5 25 0.00086 20.9 2.1 17 66-82 20-36 (62)
163 2jw4_A Cytoplasmic protein NCK 32.7 39 0.0013 20.8 3.0 16 66-81 22-37 (72)
164 2yup_A Vinexin; sorbin and SH3 32.5 20 0.00068 23.3 1.6 16 66-81 32-47 (90)
165 2lj0_A Sorbin and SH3 domain-c 32.4 27 0.00092 21.9 2.2 19 66-84 21-39 (65)
166 2drm_A Acanthamoeba myosin IB; 32.3 32 0.0011 20.0 2.4 17 66-82 18-34 (58)
167 1cka_A C-CRK N-terminal SH3 do 32.2 30 0.001 20.1 2.3 17 66-82 16-32 (57)
168 3i5r_A Phosphatidylinositol 3- 31.5 45 0.0015 21.1 3.2 15 66-80 20-34 (83)
169 3a2z_A Bifunctional glutathion 31.5 1E+02 0.0034 23.8 5.8 49 51-108 100-151 (197)
170 1x6b_A RHO guanine exchange fa 31.4 20 0.00069 22.6 1.5 16 66-81 32-47 (79)
171 2equ_A PHD finger protein 20-l 31.4 90 0.0031 20.5 4.8 41 69-109 9-50 (74)
172 4glm_A Dynamin-binding protein 31.4 29 0.00099 21.0 2.2 19 66-84 28-46 (72)
173 3rnj_A Brain-specific angiogen 31.3 35 0.0012 20.6 2.5 14 68-81 25-38 (67)
174 1uj0_A Signal transducing adap 31.3 32 0.0011 20.5 2.4 17 66-82 20-36 (62)
175 2rqr_A CED-12 homolog, engulfm 31.2 26 0.00087 24.4 2.1 16 66-81 74-89 (119)
176 2nwm_A Vinexin; cell adhesion; 31.1 33 0.0011 21.0 2.5 18 66-83 16-33 (65)
177 2khj_A 30S ribosomal protein S 30.6 57 0.002 21.9 3.8 25 69-103 75-99 (109)
178 2kxc_A Brain-specific angiogen 30.3 19 0.00065 21.8 1.2 16 66-81 22-37 (67)
179 1wi7_A SH3-domain kinase bindi 30.3 18 0.00062 22.0 1.1 15 66-80 22-36 (68)
180 4fm4_B NitrIle hydratase beta 30.1 25 0.00087 27.5 2.1 26 69-94 118-153 (206)
181 2fpe_A C-JUN-amino-terminal ki 30.0 32 0.0011 20.4 2.2 17 66-82 18-34 (62)
182 1y0m_A 1-phosphatidylinositol- 29.7 36 0.0012 20.1 2.4 17 66-82 18-34 (61)
183 3fo8_D Tail sheath protein GP1 29.6 45 0.0015 27.7 3.6 30 69-98 27-57 (283)
184 2oaw_A Spectrin alpha chain, b 29.5 36 0.0012 20.1 2.4 17 66-82 16-32 (65)
185 1w4s_A Polybromo, polybromo 1 29.5 69 0.0024 23.5 4.4 30 68-97 25-56 (174)
186 1eik_A RNA polymerase subunit 29.5 24 0.00081 23.9 1.6 29 54-82 28-63 (77)
187 3iz5_a 60S ribosomal protein L 29.3 2 7E-05 32.3 -4.1 40 70-109 5-50 (136)
188 1gl5_A Tyrosine-protein kinase 29.3 35 0.0012 20.7 2.3 17 66-82 17-33 (67)
189 3izc_G 60S ribosomal protein R 29.3 24 0.00081 27.5 1.8 36 68-104 32-67 (176)
190 3ulr_B SRC substrate cortactin 29.2 37 0.0013 20.2 2.4 19 66-84 24-42 (65)
191 3tee_A Flagella basal BODY P-r 29.2 31 0.0011 26.7 2.5 35 66-100 137-183 (219)
192 3bbo_G Ribosomal protein L4; l 28.9 12 0.0004 31.1 0.0 24 4-27 1-24 (293)
193 2fpf_A C-JUN-amino-terminal ki 28.7 34 0.0012 21.0 2.2 17 66-82 21-37 (71)
194 4b3f_X DNA-binding protein smu 28.6 49 0.0017 28.6 3.9 36 67-102 78-116 (646)
195 3h0h_A Proto-oncogene tyrosine 28.4 37 0.0013 20.7 2.3 18 66-83 30-47 (73)
196 2j05_A RAS GTPase-activating p 28.3 35 0.0012 20.5 2.2 17 66-82 21-37 (65)
197 2dm1_A Protein VAV-2; RHO fami 28.1 36 0.0012 21.0 2.2 17 66-82 22-38 (73)
198 2khi_A 30S ribosomal protein S 28.0 66 0.0023 21.9 3.8 25 69-103 75-99 (115)
199 4e6r_A Cytoplasmic protein NCK 27.9 38 0.0013 19.6 2.2 18 66-83 16-33 (58)
200 1x43_A Endophilin B1, SH3 doma 27.8 54 0.0018 20.6 3.1 16 66-81 32-47 (81)
201 1r5b_A Eukaryotic peptide chai 27.6 62 0.0021 27.1 4.2 28 66-96 294-321 (467)
202 2pqh_A Spectrin alpha chain, b 27.6 39 0.0013 21.3 2.4 18 66-83 17-34 (80)
203 1g5v_A SurviVal motor neuron p 27.5 1.1E+02 0.0039 20.5 4.9 34 69-102 10-44 (88)
204 1x2p_A Protein arginine N-meth 27.5 39 0.0013 20.5 2.3 17 66-82 22-38 (68)
205 4esr_A Jouberin; AHI-1, AHI1, 27.4 36 0.0012 20.6 2.1 18 66-83 21-38 (69)
206 3jxo_A TRKA-N domain protein; 27.3 1.1E+02 0.0037 19.0 4.5 49 19-82 25-73 (86)
207 3cqt_A P59-FYN, proto-oncogene 27.1 40 0.0014 21.4 2.4 17 66-82 20-36 (79)
208 1zlm_A Osteoclast stimulating 27.1 43 0.0015 19.6 2.4 17 66-82 18-34 (58)
209 3ngp_A Spectrin alpha chain, b 26.9 43 0.0015 19.6 2.4 18 66-83 21-38 (62)
210 1ue9_A Intersectin 2; beta bar 26.9 35 0.0012 21.3 2.0 18 66-83 22-39 (80)
211 3reb_B Tyrosine-protein kinase 26.7 62 0.0021 20.6 3.3 16 66-81 18-33 (90)
212 4f14_A Nebulette; SH3 domain, 26.6 39 0.0013 19.8 2.1 18 66-83 21-38 (64)
213 2f41_A Transcription factor FA 26.5 1E+02 0.0035 20.4 4.5 35 70-104 73-111 (121)
214 2djq_A SH3 domain containing r 26.4 40 0.0014 20.4 2.2 18 66-83 22-39 (68)
215 2vxe_A CG10686-PA; EDC3, CAR-1 26.4 1.2E+02 0.004 21.1 4.8 37 71-107 11-47 (88)
216 2j6f_A CD2-associated protein; 25.9 41 0.0014 20.0 2.1 16 66-81 16-31 (62)
217 2kxd_A 11-MER peptide, SH3 dom 25.1 44 0.0015 20.6 2.3 18 66-83 14-31 (73)
218 2dl4_A Protein STAC; SH3 domai 24.9 47 0.0016 20.2 2.3 16 66-81 22-37 (68)
219 1tuc_A Alpha-spectrin; capping 24.6 47 0.0016 20.0 2.3 18 67-84 5-22 (63)
220 3b9t_A Twin-arginine transloca 24.5 33 0.0011 30.2 2.0 64 9-80 45-108 (484)
221 1zun_B Sulfate adenylate trans 24.5 52 0.0018 27.0 3.1 31 66-99 266-296 (434)
222 3pnw_C Tudor domain-containing 24.1 76 0.0026 20.7 3.3 36 68-103 16-52 (77)
223 2k4k_A GSP13, general stress p 24.1 84 0.0029 22.0 3.8 26 68-103 50-75 (130)
224 1hr0_W Translation initiation 24.0 37 0.0013 21.8 1.7 15 67-81 44-58 (71)
225 3v2d_T 50S ribosomal protein L 23.9 1.2E+02 0.0043 22.7 4.9 28 69-96 21-55 (146)
226 3i4o_A Translation initiation 23.9 56 0.0019 21.9 2.7 25 67-91 51-75 (79)
227 2fb7_A SM-like protein, LSM-14 23.7 1.1E+02 0.0038 21.5 4.3 37 71-107 17-53 (95)
228 2jxb_A T-cell surface glycopro 23.7 57 0.002 20.9 2.7 16 66-81 46-61 (86)
229 3a8g_B NitrIle hydratase subun 23.7 39 0.0013 26.6 2.2 29 66-94 119-158 (212)
230 1wyx_A CRK-associated substrat 23.4 55 0.0019 19.8 2.4 17 66-82 18-34 (69)
231 3k67_A Putative dehydratase AF 23.3 73 0.0025 23.1 3.5 19 69-95 115-133 (159)
232 2o9s_A Ponsin; SH3 domain, sig 23.2 49 0.0017 19.9 2.1 16 66-81 21-36 (67)
233 3e1y_E Eukaryotic peptide chai 23.0 39 0.0013 25.4 1.9 30 66-98 27-56 (204)
234 1lpl_A Hypothetical 25.4 kDa p 23.0 71 0.0024 22.0 3.1 26 69-95 11-37 (95)
235 2dbk_A CRK-like protein; struc 22.9 1.5E+02 0.0051 18.8 4.6 19 66-84 33-51 (88)
236 3thk_A Spectrin alpha chain, b 22.9 55 0.0019 19.9 2.4 19 66-84 20-38 (73)
237 2ke9_A Caskin-2; SH3 domain, A 22.7 37 0.0013 22.0 1.5 18 66-83 34-51 (83)
238 2ct3_A Vinexin; SH3 domian, st 22.7 39 0.0014 20.4 1.6 17 66-82 22-38 (70)
239 1wi5_A RRP5 protein homolog; S 22.6 67 0.0023 21.9 3.0 24 69-102 67-90 (119)
240 3r8s_P 50S ribosomal protein L 22.4 1.7E+02 0.0058 21.0 5.2 28 69-96 18-52 (114)
241 3mp6_A MBP, SGF29, maltose-bin 22.2 1E+02 0.0035 25.6 4.6 39 67-105 385-427 (522)
242 3u23_A CD2-associated protein; 22.1 34 0.0012 20.2 1.2 16 66-81 22-37 (65)
243 2kbt_A Chimera of proto-oncoge 22.0 47 0.0016 23.8 2.1 16 66-81 20-35 (142)
244 2ed0_A ABL interactor 2; coile 21.8 54 0.0019 20.5 2.2 18 66-83 32-49 (78)
245 2d8j_A FYN-related kinase; SH3 21.7 45 0.0015 20.5 1.8 17 66-82 22-38 (77)
246 2e5k_A Suppressor of T-cell re 21.7 50 0.0017 21.4 2.1 16 66-81 31-46 (94)
247 1tg0_A BBC1 protein, myosin ta 21.6 55 0.0019 19.8 2.1 16 66-81 22-37 (68)
248 2dil_A Proline-serine-threonin 21.5 58 0.002 19.7 2.2 17 66-82 23-39 (69)
249 2o2o_A SH3-domain kinase-bindi 21.4 20 0.0007 23.8 0.1 16 66-81 33-48 (92)
250 2id0_A Exoribonuclease 2; RNAs 21.3 99 0.0034 27.5 4.5 35 68-102 52-87 (644)
251 4ag1_C Fynomer; hydrolase-de n 21.1 60 0.0021 20.8 2.4 18 66-83 21-38 (84)
252 2yun_A Nostrin; nitric oxide s 21.0 62 0.0021 20.1 2.4 17 66-82 22-38 (79)
253 2l66_A SSO7C4, transcriptional 20.8 44 0.0015 20.1 1.5 19 65-83 21-39 (53)
254 2cre_A HEF-like protein; SH3 d 20.6 50 0.0017 20.0 1.8 17 66-82 22-38 (71)
255 1g2b_A Spectrin alpha chain; c 20.5 68 0.0023 19.0 2.4 18 66-83 36-53 (62)
256 4dov_A ORC1, origin recognitio 20.5 1.2E+02 0.004 23.2 4.2 29 67-96 36-66 (163)
257 2dnu_A RUH-061, SH3 multiple d 20.4 48 0.0016 20.1 1.7 17 66-82 23-39 (71)
258 1x2q_A Signal transducing adap 20.4 59 0.002 20.8 2.2 17 66-82 32-48 (88)
259 2cud_A SRC-like-adapter; SH3 d 20.2 35 0.0012 21.6 1.0 15 66-80 32-46 (79)
260 1d2e_A Elongation factor TU (E 20.2 84 0.0029 25.4 3.5 31 66-97 226-256 (397)
261 1wie_A RIM binding protein 2; 20.2 1.7E+02 0.0058 19.0 4.5 14 66-79 38-51 (96)
No 1
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.2e-52 Score=333.83 Aligned_cols=132 Identities=65% Similarity=0.951 Sum_probs=68.6
Q ss_pred ChhhhhhhhhcceeeeccccccCcccCCCCCCCccccCCCCceeeeeeeeeeeeeecCCCCCcccccceeeeCCEEEEEe
Q 032704 1 MAAMAALQSSMTSLSISSNSFFGQRLSFPSLSPITVKPTDKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIA 80 (135)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~~~f~g~~l~~~~~~~~~~~~~~~~~~~~~~~k~wer~~~k~~~lp~~~k~~I~kGD~V~VI~ 80 (135)
|||| ||||||++|||||||||||||+|+++++.+++++++||++++++++|+|++|+++++|+..+|+|++||+|+||+
T Consensus 1 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lr~k~~~rslP~~~kmkIkKGD~V~VIa 79 (191)
T 3bbo_W 1 MAAM-VLQSSFTSLSLSSNSFLGQRLFPSPTTLQVKTEGHSPCLIVMRIKRWERKDCKPNSLPKLHKRHVKVGDTVKVIS 79 (191)
T ss_dssp ---------------------------------------------------------------CTTSCCSCCSSCEEECS
T ss_pred Ccch-hhhhhhhccccccccccCcccCCCccccCcccccCCceeeEecccHHHHHHhCCCCCCccccCeeecCCEEEEee
Confidence 8999 999999999999999999999988876667999999999999999999999999999998999999999999999
Q ss_pred cCCCCeEeEEEEEEccCCEEEEeccceeEEEecCCCccCCceEEEEeeeeeEE
Q 032704 81 GCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKVYSLICYF 133 (135)
Q Consensus 81 GkdKGK~G~V~~V~r~~~~ViVegvN~~kkhvK~~~e~~~GgIi~~E~PIh~S 133 (135)
|+||||+|+|++|++++|+|+|||+|+.++|+||++++++|||+++|+|||+|
T Consensus 80 GkDKGK~GkVl~V~~k~~rViVEGVN~vkKH~Kp~~~~~~GgIv~kEaPIhiS 132 (191)
T 3bbo_W 80 GGEKGKIGEISKIHKHNSTVIIKDLNFKTKHVKSKEEGEQGQIIKIEAAIHSS 132 (191)
T ss_dssp SSSTTCCCSCCCCCSSSCCCCCSSCCCCCCBCCSCCSSSCCBSSCCCCCCCGG
T ss_pred cCCCCceEEEEEEECCCCEEEEeCCEEEEEecCCcccCCCCCEEEEecCcCHH
Confidence 99999999999999999999999999999999999889999999999999987
No 2
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=99.92 E-value=8.4e-26 Score=166.18 Aligned_cols=68 Identities=34% Similarity=0.482 Sum_probs=66.1
Q ss_pred ccceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEeccceeEEEecCCCccCCceEEEEeeeeeEE
Q 032704 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKVYSLICYF 133 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVegvN~~kkhvK~~~e~~~GgIi~~E~PIh~S 133 (135)
.+|+|++||+|+||+|+|||++|+|++|++++++|+|||+|+.++|+||++++++|||+++|+|||+|
T Consensus 3 ~k~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVEGvN~~kkh~kp~~~~~~Ggi~~~E~PIh~S 70 (110)
T 3v2d_Y 3 VKMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKEAPLHAS 70 (110)
T ss_dssp CCCSCCTTSEEEECSSTTTTCEEEEEEEEGGGTEEEETTSSEEEEECCSSSSSTTCCEEEEECCEEGG
T ss_pred cccccCCCCEEEEeEcCCCCeEeEEEEEECCCCEEEEeCEEEEEEEeCCCccCCCCCEEEEECCcCHH
Confidence 47899999999999999999999999999999999999999999999999988999999999999997
No 3
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=99.91 E-value=1.8e-25 Score=165.17 Aligned_cols=71 Identities=30% Similarity=0.374 Sum_probs=67.6
Q ss_pred cccccceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEeccceeEEEecCCCccCCceEEEEeeeeeEE
Q 032704 63 PVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKVYSLICYF 133 (135)
Q Consensus 63 p~~~k~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVegvN~~kkhvK~~~e~~~GgIi~~E~PIh~S 133 (135)
+...+|+|++||+|+||+|+|||++|+|++|++++++|+|||+|+.++|+||++++++|||+++|+|||+|
T Consensus 9 ~~~rkm~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V~VEGvN~~kkh~kp~~~~~~Ggiv~~e~PIh~S 79 (115)
T 2zjr_R 9 HHNDKLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSMTNPQGGQEQRELALHAS 79 (115)
T ss_dssp TTTSCCSSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEESSSCBCCCCCCTTSSSCCCCCCCBCCCBCSS
T ss_pred ccceeCcccCCCEEEEeEcCCCCcEEEEEEEECCCCEEEEeCcEeEEEecCCCcCCCCCCEEEEEcccCHH
Confidence 44567899999999999999999999999999999999999999999999999888999999999999997
No 4
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=99.91 E-value=1.5e-24 Score=157.64 Aligned_cols=65 Identities=32% Similarity=0.475 Sum_probs=62.6
Q ss_pred ceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEeccceeEEEecCCCc-cCCceEEEEeeeeeEE
Q 032704 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREE-EEQGQIIKVYSLICYF 133 (135)
Q Consensus 68 ~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVegvN~~kkhvK~~~e-~~~GgIi~~E~PIh~S 133 (135)
.+|++||+|+||+|+||||+|+|++|+++ ++|+|||+|+.++|.||+++ +++|||+++|+|||+|
T Consensus 2 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~-~~ViVeGvN~~kkh~kp~~~~~~~Ggi~~~E~PIh~S 67 (102)
T 3r8s_U 2 AKIRRDDEVIVLTGKDKGKRGKVKNVLSS-GKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVS 67 (102)
T ss_dssp CSSCSSCEEEECSSSSTTCEEEEEEEETT-TEEEETTCSEEEEEECCCSSSSCSCEEEEEECCEEGG
T ss_pred CCccCCCEEEEeEcCCCCeeeEEEEEEeC-CEEEEeCeEEEEeccccCcccCCCCCEEEEECCcCHH
Confidence 47999999999999999999999999999 99999999999999999986 8999999999999997
No 5
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=99.88 E-value=4.9e-23 Score=148.14 Aligned_cols=60 Identities=28% Similarity=0.449 Sum_probs=58.5
Q ss_pred CCEEEEEecCCCCeEeEEEEEEccCCEEEEeccceeEEEecCCCccCCceEEEEeeeeeEE
Q 032704 73 GDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKVYSLICYF 133 (135)
Q Consensus 73 GD~V~VI~GkdKGK~G~V~~V~r~~~~ViVegvN~~kkhvK~~~e~~~GgIi~~E~PIh~S 133 (135)
||+|+||+|+||||+|+|++|++++++|+|||+|+.++|+||++ +++|+|+++|+|||+|
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVeGvN~~kkh~kp~~-~~~Ggiv~~e~pIh~S 60 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYRYIGKTM-DYRGTMIPSEAPLLHR 60 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEECCCCEEEEeCCEEEEEEcCCCC-CCCCCEEEEecCcCHH
Confidence 89999999999999999999999999999999999999999997 7899999999999987
No 6
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=99.74 E-value=1.2e-18 Score=129.83 Aligned_cols=57 Identities=32% Similarity=0.441 Sum_probs=52.1
Q ss_pred ccceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEeccceeEEEecCCCccCCceEEEEeeeeeEE
Q 032704 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKVYSLICYF 133 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVegvN~~kkhvK~~~e~~~GgIi~~E~PIh~S 133 (135)
.+|+|++||+|+||+|+|||++|+|++|++++++|+|||+|+ +| + +|| +.|+|||+|
T Consensus 39 r~~~IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~~V~VEgvn~-kK---~-----~Gg--~~e~pIh~S 95 (120)
T 1vq8_T 39 RNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTL-EK---T-----DGE--EVPRPLDTS 95 (120)
T ss_dssp SEEECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETTCEE-EC---S-----SSC--EEECCBCGG
T ss_pred ccccccCCCEEEEEecCCCCCEEEEEEEECCCCEEEEeCeEe-Ec---C-----CCC--EEEeeechH
Confidence 467899999999999999999999999999999999999999 55 2 467 899999987
No 7
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.72 E-value=2.3e-18 Score=128.41 Aligned_cols=63 Identities=25% Similarity=0.420 Sum_probs=54.9
Q ss_pred eeecCCCCCcccccceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEeccceeEEEecCCCccCCceEEEEeeeeeEE
Q 032704 54 RKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKVYSLICYF 133 (135)
Q Consensus 54 r~~~k~~~lp~~~k~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVegvN~~kkhvK~~~e~~~GgIi~~E~PIh~S 133 (135)
|.+|+.+ +|+|++||+|+||+|+|||++|+|++|++++++|+|||||+.++| | .+.|+|||+|
T Consensus 36 R~ky~~r------~~~IkkGD~V~Vi~GkdKGk~GkV~~V~~k~~~V~VEgvn~~k~~---------G--~~~e~pIh~S 98 (121)
T 3j21_U 36 REKYKVR------NLPVRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVEGATLRKTN---------G--TEVFYPIHPS 98 (121)
T ss_dssp HHHTCCS------EEECCSSSEEEECSSSCSSEEEEEEEEETTTTEEEETTCEEECSS---------S--CEEECCBCGG
T ss_pred HHHhCCc------ccccccCCEEEEeecCCCCcEeEEEEEEecCCEEEEeCeEEEecC---------C--cEEEcccCHH
Confidence 5666643 566999999999999999999999999999999999999998742 3 3889999987
No 8
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=99.69 E-value=7.1e-18 Score=126.84 Aligned_cols=64 Identities=27% Similarity=0.389 Sum_probs=55.3
Q ss_pred eeeecCCCCCcccccceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEeccceeEEEecCCCccCCceEEEEeeeeeE
Q 032704 53 ERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKVYSLICY 132 (135)
Q Consensus 53 er~~~k~~~lp~~~k~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVegvN~~kkhvK~~~e~~~GgIi~~E~PIh~ 132 (135)
.|.+|+.+++| |++||+|+||+|+|||++|+|++|++++++|+|||||+.+ ++ |+ +.|+|||+
T Consensus 39 Lr~ky~vrs~~------IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEgVn~~K----~~-----G~--~~e~pIh~ 101 (127)
T 3u5e_Y 39 LRAQYGIKALP------IRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEK----VN-----GA--SVPINLHP 101 (127)
T ss_dssp HHHHHTCCEEE------CCTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEETCEEEC----SS-----SC--EEECCBCG
T ss_pred HHHHhCcCccc------ccCCCEEEEeecCCCCccceEEEEECCCCEEEEeCeEEEC----CC-----Cc--EEEcccch
Confidence 36777766655 8999999999999999999999999999999999999974 22 43 78999998
Q ss_pred E
Q 032704 133 F 133 (135)
Q Consensus 133 S 133 (135)
|
T Consensus 102 S 102 (127)
T 3u5e_Y 102 S 102 (127)
T ss_dssp G
T ss_pred H
Confidence 7
No 9
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=99.68 E-value=1.4e-17 Score=126.33 Aligned_cols=64 Identities=25% Similarity=0.379 Sum_probs=55.6
Q ss_pred eeeecCCCCCcccccceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEeccceeEEEecCCCccCCceEEEEeeeeeE
Q 032704 53 ERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKVYSLICY 132 (135)
Q Consensus 53 er~~~k~~~lp~~~k~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVegvN~~kkhvK~~~e~~~GgIi~~E~PIh~ 132 (135)
.|.+|+.+++| |++||+|+||+|+|||++|+|++|++++++|+|||||+.+ + .|+ +.|+|||+
T Consensus 38 Lr~ky~vRs~~------IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEgVn~~K----~-----~G~--~~e~pIh~ 100 (135)
T 4a17_S 38 LRSKYNVRSMP------VRKDDEVLIVRGKFKGNKGKVTQVYRKKWAIHVEKISKNK----L-----NGA--PYQIPLSA 100 (135)
T ss_dssp HHHHHTCSEEE------CCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETTCCEEE----T-----TTE--EECCCBCG
T ss_pred HHHHhCCCccc------ccCCCEEEEeecCCCCceeeEEEEEcCCCEEEEeCeEEEc----C-----CCC--EEEcccch
Confidence 36777766655 8999999999999999999999999999999999999975 2 243 88999998
Q ss_pred E
Q 032704 133 F 133 (135)
Q Consensus 133 S 133 (135)
|
T Consensus 101 S 101 (135)
T 4a17_S 101 S 101 (135)
T ss_dssp G
T ss_pred H
Confidence 7
No 10
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=99.67 E-value=1.6e-17 Score=127.94 Aligned_cols=63 Identities=25% Similarity=0.404 Sum_probs=54.1
Q ss_pred eeecCCCCCcccccceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEeccceeEEEecCCCccCCceEEEEeeeeeEE
Q 032704 54 RKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKVYSLICYF 133 (135)
Q Consensus 54 r~~~k~~~lp~~~k~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVegvN~~kkhvK~~~e~~~GgIi~~E~PIh~S 133 (135)
|.+|+.++ ++|++||+|+||+|+|||++|+|++|++++++|+|||||+.++| |+ +.|+|||+|
T Consensus 39 R~ky~vRs------~~IkKGD~V~Vi~GkdKGk~GkVl~V~~kk~~V~VEGVN~~K~~---------G~--~~eapIh~S 101 (150)
T 3iz5_Y 39 RHKYNVRS------IPIRKDDEVQVVRGSYKGREGKVVQVYRRRWVIHVERITREKVN---------GS--TVNVGIHPS 101 (150)
T ss_dssp HTTTTCSE------EECCSSSEEEECSSTTTTCEEEEEEEETTTTEEEETTCEEECTT---------SC--EEECCBCGG
T ss_pred HHHhCCcc------cccCCCCEEEEeecCCCCccceEEEEEcCCCEEEEeCcEEEeCC---------CC--EEecccchH
Confidence 55666544 55899999999999999999999999999999999999998742 32 679999987
No 11
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.66 E-value=3.4e-17 Score=125.36 Aligned_cols=56 Identities=25% Similarity=0.415 Sum_probs=51.3
Q ss_pred cceeeeCCEEEEEecCCCCeE-eEEEEEEccCCEEEEeccceeEEEecCCCccCCceEEEEeeeeeEE
Q 032704 67 KMHVKAGDTVKVIAGCDKGKI-GEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKVYSLICYF 133 (135)
Q Consensus 67 k~~I~kGD~V~VI~GkdKGK~-G~V~~V~r~~~~ViVegvN~~kkhvK~~~e~~~GgIi~~E~PIh~S 133 (135)
+|+|++||+|+||+|+|||++ |+|++|++++++|+|||||+ .||+ | ++.|+|||+|
T Consensus 46 ~~~IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V~VEgvn~----~Kp~-----G--~~~e~PIh~S 102 (145)
T 2zkr_t 46 SMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQR----EKAN-----G--TTVHVGIHPS 102 (145)
T ss_dssp CCBCCTTCEEEECSSTTTTCCSEEEEEEETTTTEEEETTCEE----ECSS-----C--CEEECCBCGG
T ss_pred ccccCCCCEEEEeecCCCCcceeEEEEEECCCCEEEEeeeEe----EcCC-----C--ceEEeccCHH
Confidence 467999999999999999999 99999999999999999999 4554 4 8999999987
No 12
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=98.27 E-value=7.5e-07 Score=56.96 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=32.9
Q ss_pred ceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEe
Q 032704 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (135)
Q Consensus 68 ~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVe 103 (135)
..+.+||+|.|++|+++|..|+|.++++++.++.|.
T Consensus 3 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~ 38 (58)
T 1nz9_A 3 VAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVM 38 (58)
T ss_dssp CSCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEE
T ss_pred cccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEE
Confidence 347899999999999999999999999999888775
No 13
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.53 E-value=2.7e-05 Score=50.54 Aligned_cols=37 Identities=30% Similarity=0.288 Sum_probs=30.0
Q ss_pred cceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEe
Q 032704 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (135)
Q Consensus 67 k~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVe 103 (135)
+..+.+||.|.|+.|+++|-.|+|.+|+.++=+|.|+
T Consensus 5 ~~~f~~GD~V~V~~Gpf~g~~G~V~evd~e~v~V~v~ 41 (59)
T 2e6z_A 5 SSGFQPGDNVEVCEGELINLQGKILSVDGNKITIMPK 41 (59)
T ss_dssp CSSCCTTSEEEECSSTTTTCEEEECCCBTTEEEEEEC
T ss_pred cccCCCCCEEEEeecCCCCCEEEEEEEeCCEEEEEEE
Confidence 4457999999999999999999999999763333443
No 14
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=97.52 E-value=9.3e-05 Score=54.78 Aligned_cols=36 Identities=33% Similarity=0.473 Sum_probs=33.5
Q ss_pred ceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEe
Q 032704 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (135)
Q Consensus 68 ~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVe 103 (135)
..+.+||.|.|++|+++|..|+|.+|+.+++++.|+
T Consensus 90 ~~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k~~v~V~ 125 (152)
T 3p8b_B 90 SGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQ 125 (152)
T ss_dssp TTCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEE
T ss_pred ccCCCCCEEEEeeecCCCCEEEEEEEeCCCCEEEEE
Confidence 457999999999999999999999999999998877
No 15
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=97.51 E-value=8.9e-05 Score=56.10 Aligned_cols=37 Identities=24% Similarity=0.210 Sum_probs=32.8
Q ss_pred cceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEe
Q 032704 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (135)
Q Consensus 67 k~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVe 103 (135)
+..+.+||+|.|+.|+++|..|+|.+|+.+++++.|.
T Consensus 125 ~~~~~~Gd~V~V~~GPf~g~~G~v~~v~~~k~r~~V~ 161 (181)
T 2jvv_A 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVS 161 (181)
T ss_dssp CCCCCTTEEEEECSSTTTTEEEEEEEEETTTTEEEEE
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEE
Confidence 4467899999999999999999999999988887553
No 16
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=97.26 E-value=0.00046 Score=46.93 Aligned_cols=45 Identities=33% Similarity=0.451 Sum_probs=35.3
Q ss_pred eeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEeccceeEEEecC
Q 032704 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKK 114 (135)
Q Consensus 69 ~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVegvN~~kkhvK~ 114 (135)
+++.||-|+||.|++.|..|.|.+|..+ --+++-+.++..-.+-+
T Consensus 17 ~F~~GDHVkVi~G~~~getGlVV~v~~d-~v~v~SD~t~~Ei~V~~ 61 (69)
T 2do3_A 17 YFKMGDHVKVIAGRFEGDTGLIVRVEEN-FVILFSDLTMHELKVLP 61 (69)
T ss_dssp SCCTTCEEEESSSTTTTCEEEEEEECSS-CEEEEESSSCSEEEECT
T ss_pred eccCCCeEEEeccEEcCceEEEEEEeCC-EEEEEeCCCCCEEEEEh
Confidence 5899999999999999999999999843 34566777765544443
No 17
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=96.86 E-value=0.0012 Score=48.77 Aligned_cols=33 Identities=15% Similarity=0.338 Sum_probs=31.0
Q ss_pred eeCCEEEEEecCCCCeEeEEEEEEccCCEEEEe
Q 032704 71 KAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (135)
Q Consensus 71 ~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVe 103 (135)
++||+|+|+.|+++|..|++.+++.++..++|+
T Consensus 72 ~~g~~V~Iv~G~~rG~~g~L~~id~~~~~~~V~ 104 (127)
T 2ckk_A 72 APGKRILVLNGGYRGNEGTLESINEKTFSATIV 104 (127)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEE
T ss_pred CCCCEEEEEecccCCcEEEEEEEeCCCcEEEEE
Confidence 689999999999999999999999998888777
No 18
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=96.42 E-value=0.0031 Score=53.42 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=32.7
Q ss_pred cceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEe
Q 032704 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (135)
Q Consensus 67 k~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVe 103 (135)
...+.+||+|.|+.|+++|..|+|.+++.+++++.|.
T Consensus 296 ~~~f~~Gd~VrV~~GPF~G~~G~V~evd~ek~rv~V~ 332 (352)
T 2xhc_A 296 ELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVN 332 (352)
T ss_dssp -CCCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEE
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEcCCCCEEEEE
Confidence 4457899999999999999999999999999888764
No 19
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Probab=96.18 E-value=0.00082 Score=54.47 Aligned_cols=37 Identities=27% Similarity=0.383 Sum_probs=0.0
Q ss_pred cceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEe
Q 032704 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (135)
Q Consensus 67 k~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVe 103 (135)
+..+.+||+|.|++|+++|-.|+|.+|+.+++++.|.
T Consensus 192 ~~~~~~Gd~V~I~~Gpf~g~~G~v~ev~~~k~~~~V~ 228 (248)
T 1m1h_A 192 KVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVM 228 (248)
T ss_dssp -------------------------------------
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEE
Confidence 4567899999999999999999999999998877664
No 20
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=93.22 E-value=0.16 Score=37.81 Aligned_cols=41 Identities=24% Similarity=0.499 Sum_probs=34.8
Q ss_pred eeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEeccceeEEEe
Q 032704 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHV 112 (135)
Q Consensus 70 I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVegvN~~kkhv 112 (135)
+..|=.|.|..|++.|+...|+.|.-+ |+|+|+|-. ..++.
T Consensus 7 vevGRVv~i~~G~~aGklavIVdIID~-nrvLVdGp~-V~Rq~ 47 (126)
T 4a18_F 7 VQVGRVVYINYGADKGKLAVIVNIINQ-NRILIDGEH-IVRQV 47 (126)
T ss_dssp EETTEEEEECSSTTTTEEEEEEEEETT-TEEEEEETT-EEEEE
T ss_pred eecceEEEEccCCccCCEEEEEEEecC-CeEEEeCCC-cccce
Confidence 678888999999999999999999875 799999987 34433
No 21
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=93.12 E-value=0.08 Score=39.75 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=33.1
Q ss_pred eeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEeccc
Q 032704 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDIN 106 (135)
Q Consensus 70 I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVegvN 106 (135)
+.+|-.|.|..|+|.|+...|++|.-+ |+|+|+|..
T Consensus 7 vevGRVV~i~~Gr~aGk~avIV~iiD~-~rvLVdG~~ 42 (134)
T 3iz5_N 7 VEIGRVALVNYGKDYGRLVVIVDVVDQ-NRALVDAPD 42 (134)
T ss_dssp CCSSEEEECSCCSSSCCEEEEEEECSS-SEEEEEETT
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEcCC-CeEEEeCCC
Confidence 678999999999999999999999875 699999988
No 22
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=92.47 E-value=0.067 Score=37.55 Aligned_cols=36 Identities=17% Similarity=0.323 Sum_probs=31.7
Q ss_pred eeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEeccc
Q 032704 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDIN 106 (135)
Q Consensus 70 I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVegvN 106 (135)
+.+|-.|.+.+|+|+|+.-.|+++. +++.|+|.|..
T Consensus 4 v~~GrVv~~~~Gr~~Gk~~VIv~~i-D~~~vLV~gp~ 39 (96)
T 2joy_A 4 IEVGRICVKVKGREAGSKCVIVDII-DDNFVLVTGPK 39 (96)
T ss_dssp SSTTEEEECSSSSTTCCEEEEEEEC-SSSCEEEECCT
T ss_pred cccCEEEEEeecCCCCCEEEEEEEe-CCCEEEEECCc
Confidence 6789999999999999999999997 46799998864
No 23
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=91.56 E-value=0.11 Score=39.13 Aligned_cols=36 Identities=22% Similarity=0.453 Sum_probs=32.5
Q ss_pred eeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEeccc
Q 032704 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDIN 106 (135)
Q Consensus 70 I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVegvN 106 (135)
+.+|-.|.+..|+|.|+...|++|.-+ |+|+|+|-.
T Consensus 15 ve~GrVV~i~~Gr~aGk~avIV~iiD~-~rVLVDGp~ 50 (138)
T 3izc_N 15 VEVGRVVLIKKGQSAGKLAAIVEIIDQ-KKVLIDGPK 50 (138)
T ss_dssp SSTTEEEECCSCSSSCCEEEEEEECSS-SEEEEECSS
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEecC-CEEEEEcCC
Confidence 678999999999999999999999874 799999964
No 24
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=91.19 E-value=0.23 Score=37.79 Aligned_cols=41 Identities=27% Similarity=0.325 Sum_probs=35.8
Q ss_pred eeeCCEEEEEecCCCCeEeEEEEEEccC------CEEEEeccceeEE
Q 032704 70 VKAGDTVKVIAGCDKGKIGEITKVFRHN------STVMVKDINLKTK 110 (135)
Q Consensus 70 I~kGD~V~VI~GkdKGK~G~V~~V~r~~------~~ViVegvN~~kk 110 (135)
+.+|-.|.|++|++.|+...|+++..++ +.++|.||....+
T Consensus 5 ~kpGrVvivl~Gr~aGkkaVIvk~iD~gt~d~~y~~aLVaGIdryP~ 51 (144)
T 4a18_N 5 LKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSPK 51 (144)
T ss_dssp CCTTEEEEECSSTTTTCEEEEEEEESSCCSSCCSCEEEEEEEEECCC
T ss_pred ccCCeEEEEecCCcCCCEEEEEEecCCCccCCccceEEEEecccCCc
Confidence 6788899999999999999999999775 8999999765443
No 25
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=90.76 E-value=0.11 Score=35.72 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=31.4
Q ss_pred eeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEeccc
Q 032704 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDIN 106 (135)
Q Consensus 70 I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVegvN 106 (135)
+..|-.|.+.+|+|+|+...|+++.-+ ++|+|.|..
T Consensus 4 ~~~Grvv~~~~Gr~~Gk~~vIv~iiD~-~~vlV~g~~ 39 (83)
T 3j21_5 4 IDVGRIAVVIAGRRAGQKVVVVDIIDK-NFVLVTGAG 39 (83)
T ss_dssp CCTTEEEECSSSSSSCCCEEEEEECSS-SCEEEECCT
T ss_pred cccCEEEEEeecCCCCCEEEEEEEcCC-CEEEEECCc
Confidence 678999999999999999999998754 689998864
No 26
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.27 E-value=0.31 Score=33.02 Aligned_cols=31 Identities=32% Similarity=0.417 Sum_probs=25.3
Q ss_pred eeCCEEEEEecCCCCeEeEEEEEEccCCEEEEe
Q 032704 71 KAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (135)
Q Consensus 71 ~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVe 103 (135)
..|-+|.|..|++||..|.|..+... .+.||
T Consensus 19 liGktV~I~kGpyKG~~GiVkd~t~~--~~RVE 49 (71)
T 2e70_A 19 LIGQTVRISQGPYKGYIGVVKDATES--TARVE 49 (71)
T ss_dssp STTSEEEECSSTTTTCEEEEEEECSS--CEEEE
T ss_pred cCCCEEEEeccCCCCeEEEEEECCCC--eEEEE
Confidence 35779999999999999999888765 45555
No 27
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A
Probab=88.19 E-value=0.39 Score=32.69 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=31.5
Q ss_pred eeeCCEEEEEecC--CCCeEeEEEEEEccC----CEEEEeccce
Q 032704 70 VKAGDTVKVIAGC--DKGKIGEITKVFRHN----STVMVKDINL 107 (135)
Q Consensus 70 I~kGD~V~VI~Gk--dKGK~G~V~~V~r~~----~~ViVegvN~ 107 (135)
|.+|++|.|++=. .-+.+|+|.+|+..+ =.|..|++|-
T Consensus 2 i~rGs~VrIlr~eSywy~~vG~V~~Vd~~~~~ypV~VrFekvNy 45 (70)
T 1qp2_A 2 VQRGSKVRILRPESYWFQDVGTVASVDQSGIKYPVIVRFEKVNY 45 (70)
T ss_dssp CCTTCEEEECCTTSTTTTCEEEEEEECCSSCSCSEEEECSSCCS
T ss_pred cCCCCEEEEcCccceeecceeEEEEEeCCCcEeeEEEEeccccc
Confidence 6899999999986 679999999999975 2466777775
No 28
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=83.98 E-value=1.1 Score=36.93 Aligned_cols=41 Identities=27% Similarity=0.467 Sum_probs=33.4
Q ss_pred ccceeeeCCEEEEEecCCCCeEeEEEEEEccC---CEEEEeccc
Q 032704 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHN---STVMVKDIN 106 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~---~~ViVegvN 106 (135)
.-.++..|-.|.|+.|++-|.+|+|..+.++. +.|.|++-+
T Consensus 171 d~ikfe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd~~ 214 (265)
T 3iz6_D 171 DFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDAL 214 (265)
T ss_dssp EEECCSTTCEEEECSSSSCSCEEEEEEEECCSSSCCEEEECCCS
T ss_pred eEEEccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEECC
Confidence 34567778899999999999999999999864 478887643
No 29
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=83.68 E-value=0.94 Score=36.86 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=34.2
Q ss_pred ccceeeeCCEEEEEecCCCCeEeEEEEEEccC----CEEEEeccc
Q 032704 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHN----STVMVKDIN 106 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~----~~ViVegvN 106 (135)
.-.++..|-.|.|+.|++-|.+|+|..+.++. +.|.|++-+
T Consensus 175 d~ikf~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~~V~v~d~~ 219 (243)
T 3j20_E 175 EVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDEE 219 (243)
T ss_dssp EEEECCTTCEEEECSSSSTTCEEEEEECCCCCSSSCCEEEEEESS
T ss_pred eEEeccCCCEEEEECCccceEEEEEEEEEEecCCCceEEEEEcCC
Confidence 34677789999999999999999999998753 668888754
No 30
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=82.59 E-value=1.8 Score=35.55 Aligned_cols=39 Identities=26% Similarity=0.491 Sum_probs=32.8
Q ss_pred cceeeeCCEEEEEecCCCCeEeEEEEEEccC---CEEEEecc
Q 032704 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHN---STVMVKDI 105 (135)
Q Consensus 67 k~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~---~~ViVegv 105 (135)
-.++..|-.|.|+.|++-|.+|+|.++.++. +.|.|++-
T Consensus 174 ~ikfe~G~l~mvtgG~n~GriG~I~~~e~~~gs~~iV~vkd~ 215 (260)
T 2xzm_W 174 FAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDA 215 (260)
T ss_dssp CCBCCSSCEEEECSSTTTTCEEEEEEEECCCSSCCEEEEECT
T ss_pred EEEecCCCEEEEECCccceeEEEEEEEEecCCCCcEEEEEeC
Confidence 3567889999999999999999999987663 67888864
No 31
>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli}
Probab=80.04 E-value=0.0036 Score=46.11 Aligned_cols=30 Identities=20% Similarity=0.125 Sum_probs=21.5
Q ss_pred ceeeeCCEEEEEecCCCCeEeEEEEEEccC
Q 032704 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHN 97 (135)
Q Consensus 68 ~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~ 97 (135)
..+.+||+|.|+.|+++|..|+|.+++.++
T Consensus 108 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k 137 (162)
T 2oug_A 108 ATPYPGDKVIITEGAFEGFQAIFTEPDGEA 137 (162)
T ss_dssp -------CTTHHHHHHHHHHHHTTCSSHHH
T ss_pred CCCCCCCEEEEcccCCCCcEEEEEEECCCC
Confidence 457899999999999999999999998764
No 32
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=78.18 E-value=1.6 Score=34.84 Aligned_cols=38 Identities=18% Similarity=0.369 Sum_probs=32.2
Q ss_pred ccceeeeCCEEEEEecCCCCeEeEEEEEEccC----CEEEEe
Q 032704 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHN----STVMVK 103 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~----~~ViVe 103 (135)
.-.++..|-.|.|+.|+.-|++|+|..+.+.. +.|.|+
T Consensus 135 d~ikf~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~iV~v~ 176 (213)
T 3kbg_A 135 EIIKMQPGNKAYITAGSHVNQTGTISKIEAKEGSSANLVHFQ 176 (213)
T ss_dssp EEECCSTTCEEEECSSTTTTCEEEEEEECCCSCC--CEEEET
T ss_pred eEEEcCCCCEEEEECCCcceEEEEEEEEEEccCCCCCEEEEE
Confidence 34677889999999999999999999999764 468887
No 33
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=77.35 E-value=1.1 Score=36.90 Aligned_cols=41 Identities=34% Similarity=0.467 Sum_probs=33.8
Q ss_pred ccceeeeCCEEEEEecCCCCeEeEEEEEEccC---CEEEEeccc
Q 032704 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHN---STVMVKDIN 106 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~---~~ViVegvN 106 (135)
.-.++..|-.|.|+.|++-|.+|+|..+.++. +.|.|++-+
T Consensus 171 d~ikfe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd~~ 214 (261)
T 3u5c_E 171 DFIKFDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSL 214 (261)
T ss_dssp EEECCCSSCCEEECSSTTTTCBCCCCEEECCTTSCCEEEEECTT
T ss_pred eEEEccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEECC
Confidence 34567788999999999999999999999864 478887654
No 34
>3bbo_X Ribosomal protein L27; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=76.83 E-value=0.51 Score=37.59 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=0.0
Q ss_pred hhhhhhhcceeeecc-ccccCcccC
Q 032704 4 MAALQSSMTSLSISS-NSFFGQRLS 27 (135)
Q Consensus 4 ~~~~~~~~~~l~~~~-~~f~g~~l~ 27 (135)
|..|-++|.|||||| +|||--.++
T Consensus 8 ~~~l~~~f~g~s~sssssf~~~~~~ 32 (198)
T 3bbo_X 8 SLNLIGAFKGLSLSSTSSFLRGDLS 32 (198)
T ss_dssp -------------------------
T ss_pred HHHHHHHhcccccccccceeccccc
Confidence 368999999999977 667766654
No 35
>1jb0_E Photosystem 1 reaction centre subunit IV; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: b.34.4.2 PDB: 3pcq_E*
Probab=73.36 E-value=3.7 Score=28.10 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=24.2
Q ss_pred eeeCCEEEEEecC--CCCeEeEEEEEEcc
Q 032704 70 VKAGDTVKVIAGC--DKGKIGEITKVFRH 96 (135)
Q Consensus 70 I~kGD~V~VI~Gk--dKGK~G~V~~V~r~ 96 (135)
|.+||+|.|++=. .-..+|+|.+|+..
T Consensus 1 i~RGskVrIlR~ESYWyn~vGtVasVD~s 29 (75)
T 1jb0_E 1 VQRGSKVKILRPESYWYNEVGTVASVDQT 29 (75)
T ss_dssp CCTTCEEEECCTTCTTBTCEEEEEEECCC
T ss_pred CCCCCEEEEccccceeecCcceEEEEecC
Confidence 4789999999986 77899999999997
No 36
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=67.26 E-value=6.2 Score=26.42 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=35.2
Q ss_pred eeeCCEEEEEecC--CCCeEeEEEEEEccCCEEEEeccceeE
Q 032704 70 VKAGDTVKVIAGC--DKGKIGEITKVFRHNSTVMVKDINLKT 109 (135)
Q Consensus 70 I~kGD~V~VI~Gk--dKGK~G~V~~V~r~~~~ViVegvN~~k 109 (135)
|.+|-+|.|+.-+ +-|-+|.|..|...+--|+.||-|--|
T Consensus 2 ilPG~~V~V~np~~~Yy~y~G~VQRvsdgkaaVLFEGGnWDK 43 (66)
T 2jz2_A 2 IFPGATVRVTNVDDTYYRFEGLVQRVSDGKAAVLFENGNWDK 43 (66)
T ss_dssp CCTTCEEEECCTTSTTBTCEEEEEEEETTEEEEEEESSSCEE
T ss_pred ccCCCEEEEeCCCCcccceeEEEEEecCCcEEEEecCCCcee
Confidence 6789999999886 789999999999998899999988644
No 37
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=66.17 E-value=7.8 Score=27.96 Aligned_cols=29 Identities=14% Similarity=-0.009 Sum_probs=18.9
Q ss_pred ccceeeeCCEEEEEecCC-CCeEeEEEEEE
Q 032704 66 HKMHVKAGDTVKVIAGCD-KGKIGEITKVF 94 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gkd-KGK~G~V~~V~ 94 (135)
.--.+++||.|.+..|.+ .=..-+|.+|.
T Consensus 88 ~A~~l~~GD~v~~~~~~~~~~~~~~V~~v~ 117 (145)
T 1at0_A 88 FADRIEEKNQVLVRDVETGELRPQRVVKVG 117 (145)
T ss_dssp EGGGCCTTCEEEEECTTTCCEEEEEEEEEE
T ss_pred EHHHCcCCCEEEEecCCCCCEEEEEEEEEE
Confidence 344689999999998832 22444555553
No 38
>4a17_P RPL21, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_P 4a1c_P 4a1e_P
Probab=65.80 E-value=4.2 Score=31.15 Aligned_cols=47 Identities=26% Similarity=0.478 Sum_probs=34.9
Q ss_pred eeeeCCEEEEEe------c----CCCCeEeEEEEEEcc----------CCEEEEeccceeEEEecCC
Q 032704 69 HVKAGDTVKVIA------G----CDKGKIGEITKVFRH----------NSTVMVKDINLKTKHVKKR 115 (135)
Q Consensus 69 ~I~kGD~V~VI~------G----kdKGK~G~V~~V~r~----------~~~ViVegvN~~kkhvK~~ 115 (135)
..++||.|-|.- | .+-|+.|.|..|..+ +++++.+-||+...|+|++
T Consensus 33 ~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvtq~AvgiiVnk~v~gkil~KrI~VriEHik~s 99 (157)
T 4a17_P 33 TYKVGEYVDIMVDGSQHKGMPYKLYHGRTGKVFNVNPRSIGVIVHRIVNGRYIEKRLHVKIEHVRPS 99 (157)
T ss_dssp CCCTTCEEEECCCSSCCTTCCCGGGTTEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEGGGEEEC
T ss_pred HhcCCCEEEEeccCceecCCCCccccCCcccEeeecCeEEEEEEEEeECCEeeeeEEEEeHHHcccc
Confidence 568999998853 2 267999999765443 4677777888888888875
No 39
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A
Probab=64.16 E-value=6.6 Score=23.13 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=14.0
Q ss_pred ccceeeeCCEEEEEecCC
Q 032704 66 HKMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gkd 83 (135)
..+.+++||.|.|+.-.+
T Consensus 16 ~eLs~~~Gd~i~v~~~~~ 33 (58)
T 1zuy_A 16 SELPLKKGDVIYITREEP 33 (58)
T ss_dssp TBCCBCTTCEEEEEEECT
T ss_pred CcCCCCCCCEEEEEEecC
Confidence 355689999999998643
No 40
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=63.86 E-value=13 Score=24.53 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=18.5
Q ss_pred ccceeeeCCEEEEEecCCCCeEeEEEEEE
Q 032704 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVF 94 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~GkdKGK~G~V~~V~ 94 (135)
-+-+|.+||.|.++.-.-.-..-+|.++.
T Consensus 26 ~rN~f~~GD~iEi~~P~g~~~~~~v~~m~ 54 (89)
T 4he6_A 26 QRNHFRPGDEVEFFGPEIENFTQVIEKIW 54 (89)
T ss_dssp ESSCBCTTCEEEEESTTSCCEEEECCCEE
T ss_pred EcCCcCCCCEEEEEcCCCCcEEEEeHHeE
Confidence 35568999999999543223444555554
No 41
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=60.64 E-value=5.5 Score=23.81 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=13.6
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 19 ~eLs~~~Gd~i~v~~~~ 35 (59)
T 2g6f_X 19 DELSFSKGDVIHVTRVE 35 (59)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred CCcCCCCCCEEEEEEec
Confidence 45668999999999753
No 42
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}
Probab=59.75 E-value=5.6 Score=24.94 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=14.0
Q ss_pred ccceeeeCCEEEEEecCC
Q 032704 66 HKMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gkd 83 (135)
..+.+++||.|.|+.-.+
T Consensus 18 ~eLsf~~Gd~i~v~~~~~ 35 (68)
T 2ew3_A 18 GELGFKEGDIITLTNQID 35 (68)
T ss_dssp TBCCBCTTCEEEEEEESS
T ss_pred CccCCCCCCEEEEEEecC
Confidence 356689999999998543
No 43
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E
Probab=59.22 E-value=7.5 Score=30.68 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=30.9
Q ss_pred eeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEec
Q 032704 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKD 104 (135)
Q Consensus 69 ~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVeg 104 (135)
.|.+|..|.|++|++.|+...+++... ++-++|-|
T Consensus 44 si~pGtVlIiL~Gr~~GKrvV~LKql~-sgllLVtG 78 (191)
T 4a18_E 44 DIAPGTVLILLAGRFRGKRVVFLKQLK-SGLLLVTG 78 (191)
T ss_dssp TCCTTEEEEECSSTTTTBEEEEEEECT-TSCEEEEC
T ss_pred cccCCCEEEEeccccCCCEEEEEEecC-CCeEEEec
Confidence 478999999999999999999999986 57888877
No 44
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=59.13 E-value=8.3 Score=22.76 Aligned_cols=18 Identities=17% Similarity=0.464 Sum_probs=14.1
Q ss_pred ccceeeeCCEEEEEecCC
Q 032704 66 HKMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gkd 83 (135)
..+.+++||.|.|+.-.+
T Consensus 16 ~eLs~~~Gd~i~v~~~~~ 33 (58)
T 1zuu_A 16 DEITITPGDKISLVARDT 33 (58)
T ss_dssp TBCCBCTTCCEEEEECCS
T ss_pred CcccCCCCCEEEEeEcCC
Confidence 356689999999997553
No 45
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=58.13 E-value=25 Score=23.81 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=29.9
Q ss_pred ccceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEE
Q 032704 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMV 102 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViV 102 (135)
....+.+|.+|.++.-...--+.+|+.|+.++.++.|
T Consensus 16 ~~~~F~vGmkLEA~D~~~~~~~a~i~~v~~~~~~v~V 52 (88)
T 2eqm_A 16 PGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLV 52 (88)
T ss_dssp SSCCCCSSCEEEEECTTSCEEEEEEEEEETTTTEEEE
T ss_pred CcCcCCCCCEEEEEcCCCCeeEEEEEEEeccCCEEEE
Confidence 3455899999999987777789999999988777654
No 46
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A
Probab=57.79 E-value=6.6 Score=23.29 Aligned_cols=17 Identities=18% Similarity=0.534 Sum_probs=13.7
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 16 ~eLs~~~Gd~i~v~~~~ 32 (58)
T 1uti_A 16 DELGFRSGEVVEVLDSS 32 (58)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CCCCCCCCCEEEEEEEC
Confidence 45668999999999753
No 47
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research CEN structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A
Probab=57.14 E-value=8.5 Score=30.49 Aligned_cols=38 Identities=11% Similarity=0.239 Sum_probs=29.1
Q ss_pred ccceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEe
Q 032704 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVe 103 (135)
.-++++.||.|.|..|...--.++|..+.++.-.+.|.
T Consensus 32 ~VLRl~~Gd~v~l~dg~g~~~~a~I~~~~~~~~~~~i~ 69 (257)
T 1vhy_A 32 RVLRMTEGEQLELFDGSNHIYPAKIIESNKKSVKVEIL 69 (257)
T ss_dssp TTSCCCTTCEEEEECSSSEEEEEEEEEECSSCEEEEEC
T ss_pred HHhccCCCCEEEEEcCCCCEEEEEEEEeeCCeEEEEEE
Confidence 34678999999999997666778999998776555443
No 48
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=56.77 E-value=13 Score=21.61 Aligned_cols=17 Identities=29% Similarity=0.626 Sum_probs=13.7
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 15 ~eLs~~~Gd~i~v~~~~ 31 (54)
T 2a28_A 15 DEISIDPGDIITVIRGD 31 (54)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CCccCCCCCEEEEEEec
Confidence 35668999999999865
No 49
>4e8b_A Ribosomal RNA small subunit methyltransferase E; 16S rRNA methyltransferase; 2.25A {Escherichia coli}
Probab=56.34 E-value=9.2 Score=30.13 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=28.4
Q ss_pred cceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEE
Q 032704 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMV 102 (135)
Q Consensus 67 k~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViV 102 (135)
-++++.||+|.|..|...=-.++|+++.++.-.+.|
T Consensus 31 VLR~~~Gd~v~l~dg~g~~~~a~I~~i~~~~~~~~i 66 (251)
T 4e8b_A 31 VLRMGPGQALQLFDGSNQVFDAEITSASKKSVEVKV 66 (251)
T ss_dssp TSCCCSCCEEEEECSSSEEEEEEEEEECSSCEEEEE
T ss_pred hCcCCCCCEEEEEeCCCcEEEEEEEEeecceEEEEE
Confidence 457899999999999876678999999877544433
No 50
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Probab=56.14 E-value=7.1 Score=23.59 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=14.0
Q ss_pred ccceeeeCCEEEEEecCC
Q 032704 66 HKMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gkd 83 (135)
..+.+++||.|.|+.-.+
T Consensus 21 ~eLs~~~Gd~i~v~~~~~ 38 (64)
T 2ak5_A 21 DELSFSKGDVIHVTRVEE 38 (64)
T ss_dssp TBCCBCTTCEEEEEECCT
T ss_pred CcccCCCCCEEEEeEecC
Confidence 456689999999997543
No 51
>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Probab=55.94 E-value=7.4 Score=22.98 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=13.6
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 17 ~eLs~~~Gd~i~v~~~~ 33 (58)
T 2vwf_A 17 GELGFRRGDFIHVMDNS 33 (58)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CCcCCCCCCEEEEEEcC
Confidence 35668999999999853
No 52
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}
Probab=55.81 E-value=7.4 Score=23.29 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=13.5
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 20 ~eLs~~~Gd~i~v~~~~ 36 (60)
T 2xmf_A 20 DELSFNANDIIDIIKED 36 (60)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred CCcCCCCCCEEEEEEec
Confidence 45668999999998754
No 53
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A
Probab=55.53 E-value=7.3 Score=23.97 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=13.7
Q ss_pred ccceeeeCCEEEEEecCC
Q 032704 66 HKMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gkd 83 (135)
..+.+++||.|.|+.-.+
T Consensus 18 ~eLsf~~Gd~i~v~~~~~ 35 (67)
T 2bzy_A 18 TALALEVGDIVKVTRMNI 35 (67)
T ss_dssp TBCCBCTTCEEEEEEECS
T ss_pred CccccCCCCEEEEEEecC
Confidence 345689999999987543
No 54
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Probab=55.49 E-value=11 Score=23.13 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=14.0
Q ss_pred ccceeeeCCEEEEEecCC
Q 032704 66 HKMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gkd 83 (135)
..+.+++||.|.|+.-.+
T Consensus 18 ~eLs~~~Gd~i~v~~~~~ 35 (69)
T 1ruw_A 18 SELPLKKGDIVFISRDEP 35 (69)
T ss_dssp TBCCBCTTCEEEEEEECT
T ss_pred CcccCCCCCEEEEEEecC
Confidence 456689999999997543
No 55
>3iz5_U 60S ribosomal protein L21 (L21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_U
Probab=54.76 E-value=4.6 Score=31.17 Aligned_cols=47 Identities=28% Similarity=0.432 Sum_probs=32.5
Q ss_pred eeeeCCEEEEEe------c----CCCCeEeEEEEEEccCCEEE----------EeccceeEEEecCC
Q 032704 69 HVKAGDTVKVIA------G----CDKGKIGEITKVFRHNSTVM----------VKDINLKTKHVKKR 115 (135)
Q Consensus 69 ~I~kGD~V~VI~------G----kdKGK~G~V~~V~r~~~~Vi----------VegvN~~kkhvK~~ 115 (135)
..++||.|-|.- | .+-|+.|.|..|..+---|+ .+-||+...|+|++
T Consensus 33 ~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvt~~AvgV~Vnk~v~gkil~KrInVriEHik~s 99 (164)
T 3iz5_U 33 TYKVGEHVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPS 99 (164)
T ss_dssp CCCTTCEEEECCCTTCCSSCCCGGGTTEEEEEEEECSSSEEEEEECCSSSSCCEEEEEECGGGEEEC
T ss_pred HhCCCCEEEEEccCcccCCCCCcccCCCCeeEEeecCCEEEEEEEeeeCCeeeeeEEEEeHHHcccc
Confidence 568999998853 2 27799999987766544444 45566666677764
No 56
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}
Probab=54.57 E-value=7.9 Score=23.21 Aligned_cols=16 Identities=13% Similarity=0.295 Sum_probs=12.9
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 21 ~eLs~~~Gd~i~v~~~ 36 (60)
T 2gnc_A 21 RELSFKKGASLLLYHR 36 (60)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CCcCCCCCCEEEEEEe
Confidence 3556899999999874
No 57
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.54 E-value=17 Score=22.85 Aligned_cols=15 Identities=33% Similarity=0.594 Sum_probs=12.7
Q ss_pred ccceeeeCCEEEEEe
Q 032704 66 HKMHVKAGDTVKVIA 80 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~ 80 (135)
..+.+++||.|.|+.
T Consensus 29 ~eLsf~~Gd~i~v~~ 43 (75)
T 2ege_A 29 GRLALRAGDVVMVYG 43 (75)
T ss_dssp CBCCBCTTCEEEEES
T ss_pred CcceECCCCEEEEeE
Confidence 456789999999996
No 58
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.37 E-value=15 Score=23.21 Aligned_cols=18 Identities=33% Similarity=0.612 Sum_probs=14.3
Q ss_pred ccceeeeCCEEEEEecCC
Q 032704 66 HKMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gkd 83 (135)
..+.+++||.|.|+.-.+
T Consensus 32 ~eLsf~~Gd~i~v~~~~~ 49 (80)
T 2d8h_A 32 GDLNFQAGDRITVISKTD 49 (80)
T ss_dssp TBCEECTTCEEEEEECCS
T ss_pred CeeeEcCCCEEEEeECcC
Confidence 356689999999998653
No 59
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Probab=53.81 E-value=9.8 Score=22.56 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=12.9
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 18 ~eLs~~~Gd~i~v~~~ 33 (60)
T 2x3w_D 18 DELSFKAGDELTKLGE 33 (60)
T ss_dssp SBCCBCTTCEEEECSC
T ss_pred CcccCCCCCEEEEEEc
Confidence 3566899999999874
No 60
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Probab=53.72 E-value=8.3 Score=23.11 Aligned_cols=18 Identities=22% Similarity=0.481 Sum_probs=13.8
Q ss_pred ccceeeeCCEEEEEecCC
Q 032704 66 HKMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gkd 83 (135)
..+.+++||.|.|+.-.+
T Consensus 19 ~eLs~~~Gd~i~v~~~~~ 36 (60)
T 1w70_A 19 LELNFKAGDVIFLLSRIN 36 (60)
T ss_dssp TBCCBCTTCEEEEEEECS
T ss_pred CCccCCCCCEEEEEEeCC
Confidence 346689999999997543
No 61
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Probab=53.63 E-value=8.1 Score=24.17 Aligned_cols=18 Identities=17% Similarity=0.385 Sum_probs=14.0
Q ss_pred ccceeeeCCEEEEEecCC
Q 032704 66 HKMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gkd 83 (135)
..+.+++||.|.|+.-.+
T Consensus 28 ~eLs~~~Gd~i~v~~~~~ 45 (73)
T 3c0c_A 28 GELGFREGDLITLTNQID 45 (73)
T ss_dssp TBCCBCTTCEEEEEEECS
T ss_pred CCccCcCCCEEEEEEecC
Confidence 356689999999998543
No 62
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A
Probab=53.58 E-value=15 Score=21.55 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=13.7
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 17 ~eLs~~~Gd~i~v~~~~ 33 (58)
T 1sem_A 17 GELAFKRGDVITLINKD 33 (58)
T ss_dssp TBCCBCTTCEEEEEECS
T ss_pred CCcCCCCCCEEEEEEec
Confidence 35668999999999854
No 63
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=53.39 E-value=25 Score=22.05 Aligned_cols=36 Identities=19% Similarity=0.164 Sum_probs=26.6
Q ss_pred cceeeeCCEEEEEe-cCCCCeEeEEEEEEccCCEEEE
Q 032704 67 KMHVKAGDTVKVIA-GCDKGKIGEITKVFRHNSTVMV 102 (135)
Q Consensus 67 k~~I~kGD~V~VI~-GkdKGK~G~V~~V~r~~~~ViV 102 (135)
....++||.|...- ...+=-.++|++|..+++.+.|
T Consensus 6 ~~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V 42 (64)
T 4a4f_A 6 THSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAI 42 (64)
T ss_dssp SSCCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEE
T ss_pred CCCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEE
Confidence 34569999999985 4444567999999987666444
No 64
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.38 E-value=9.3 Score=23.48 Aligned_cols=17 Identities=12% Similarity=0.276 Sum_probs=13.4
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 22 ~eLs~~~Gd~i~v~~~~ 38 (68)
T 1x2k_A 22 DELYFEEGDIIYITDMS 38 (68)
T ss_dssp TBCCCCSSCEEEEEECS
T ss_pred CcccCCCCCEEEEEEcC
Confidence 45668999999999743
No 65
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=53.37 E-value=8.1 Score=24.40 Aligned_cols=16 Identities=13% Similarity=0.424 Sum_probs=13.0
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 22 ~eLs~~~Gd~i~v~~~ 37 (78)
T 2yuo_A 22 DELGFRKNDIITIISQ 37 (78)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CCccCCCCCEEEEEEe
Confidence 3566899999999974
No 66
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A
Probab=53.09 E-value=22 Score=22.29 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=13.9
Q ss_pred ccceeeeCCEEEEEecCC
Q 032704 66 HKMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gkd 83 (135)
..+.+++||.|.|+.-.+
T Consensus 26 ~eLs~~~Gd~i~v~~~~~ 43 (73)
T 2ebp_A 26 DSLKLKKGDIIDIISKPP 43 (73)
T ss_dssp SBCCBCSSCEEEEEECCS
T ss_pred CccCCCCCCEEEEEEeCC
Confidence 355689999999998543
No 67
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=52.63 E-value=11 Score=30.00 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=27.4
Q ss_pred cceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEE
Q 032704 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMV 102 (135)
Q Consensus 67 k~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViV 102 (135)
-++++.||.|.|..|...--.++|.++.++.-.+.|
T Consensus 30 VLRl~~Gd~v~l~dg~g~~~~a~I~~i~~~~~~~~i 65 (257)
T 3kw2_A 30 VLRMQAGDRLRLTDGRGSFFDAVIETADRKSCYVSV 65 (257)
T ss_dssp TSCCCTTCEEEEECSBSEEEEEEEEEECSSCEEEEE
T ss_pred hccCCCCCEEEEEECCCCEEEEEEEEeeCCEEEEEE
Confidence 456899999999999865567889988876544433
No 68
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.58 E-value=9.5 Score=24.07 Aligned_cols=16 Identities=13% Similarity=0.451 Sum_probs=13.1
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 25 ~eLs~~~Gd~i~v~~~ 40 (76)
T 2epd_A 25 QELSFRRGDVLRLHER 40 (76)
T ss_dssp TBCEECTTCEEEEEEE
T ss_pred CccCCCCCCEEEEEEe
Confidence 3566899999999875
No 69
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.07 E-value=8.8 Score=23.93 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=12.8
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 24 ~eLs~~~Gd~i~v~~~ 39 (72)
T 2dl8_A 24 RELSFKKGASLLLYQR 39 (72)
T ss_dssp SBCCBCTTCEEEEEEE
T ss_pred CEeccCCCCEEEEEee
Confidence 3556899999999874
No 70
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=51.77 E-value=12 Score=29.75 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=27.6
Q ss_pred ccceeeeCCEEEEEecCCCCeEeEEEEEEccCCEE
Q 032704 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTV 100 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~V 100 (135)
.-++++.||.|.|..|...--.++|.++.++.-.+
T Consensus 33 ~VLRl~~Gd~i~l~dg~G~~~~a~I~~~~~~~~~~ 67 (268)
T 1vhk_A 33 NVMRMNEGDQIICCSQDGFEAKCELQSVSKDKVSC 67 (268)
T ss_dssp TTTCCCTTCEEEEECTTSCEEEEEEEEECSSEEEE
T ss_pred HhhcCCCCCEEEEEeCCCCEEEEEEEEecCCEEEE
Confidence 34678999999999998777788998887664333
No 71
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A
Probab=51.74 E-value=11 Score=23.04 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=13.4
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 22 ~eLs~~~Gd~i~v~~~~ 38 (68)
T 2dl3_A 22 KELPLQKGDIVYIYKQI 38 (68)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CCccCCCCCEEEEeEec
Confidence 35668999999999753
No 72
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A
Probab=51.49 E-value=9.6 Score=22.60 Aligned_cols=17 Identities=24% Similarity=0.473 Sum_probs=13.4
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 17 ~eLs~~~Gd~i~v~~~~ 33 (58)
T 1zx6_A 17 GDLGLKPGDKVQLLEKL 33 (58)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred CCccCCCCCEEEEEEec
Confidence 45668999999998753
No 73
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}
Probab=51.46 E-value=7.3 Score=24.03 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=12.8
Q ss_pred cceeeeCCEEEEEecC
Q 032704 67 KMHVKAGDTVKVIAGC 82 (135)
Q Consensus 67 k~~I~kGD~V~VI~Gk 82 (135)
.+.+++||.|.|+.-.
T Consensus 24 eLs~~~Gd~i~v~~~~ 39 (67)
T 2eyx_A 24 ALALEVGELVKVTKIN 39 (67)
T ss_dssp BCCBCSSEEEEEEEEC
T ss_pred ccccCCCCEEEEEEec
Confidence 4568999999998753
No 74
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A
Probab=51.30 E-value=11 Score=22.54 Aligned_cols=16 Identities=6% Similarity=0.420 Sum_probs=13.1
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 21 ~eLs~~~Gd~i~v~~~ 36 (62)
T 2iim_A 21 GDLGFEKGEQLRILEQ 36 (62)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CCcCCCCCCEEEEEEc
Confidence 3556899999999985
No 75
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Probab=51.05 E-value=17 Score=22.23 Aligned_cols=15 Identities=20% Similarity=0.437 Sum_probs=13.1
Q ss_pred cceeeeCCEEEEEec
Q 032704 67 KMHVKAGDTVKVIAG 81 (135)
Q Consensus 67 k~~I~kGD~V~VI~G 81 (135)
.+.+++||.|.|+.-
T Consensus 26 eLsf~~Gd~i~v~~~ 40 (70)
T 1gcq_C 26 FLRLNPGDIVELTKA 40 (70)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred cCCcCCCCEEEEEeC
Confidence 566899999999986
No 76
>1z85_A Hypothetical protein TM1380; alpha/beta knot fold, structural genomics, joint center for structural genomics, JCSG; 2.12A {Thermotoga maritima}
Probab=50.97 E-value=11 Score=29.57 Aligned_cols=37 Identities=11% Similarity=0.221 Sum_probs=28.7
Q ss_pred ccceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEE
Q 032704 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMV 102 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViV 102 (135)
.-++++.||.|.|..|...--.++|.++.++.-.+.+
T Consensus 37 ~VLRl~~Gd~v~l~dg~G~~~~a~I~~~~~~~~~~~i 73 (234)
T 1z85_A 37 RVVRLKEGDVIEATDGNGFSYTCILKSLKKKTAAAKI 73 (234)
T ss_dssp HHTTCCTTCEEEEECSBSEEEEEEEEEECSSCEEEEE
T ss_pred HhhcCCCCCEEEEEeCCCCEEEEEEEEecCCEEEEEE
Confidence 3467899999999999877777889888877544444
No 77
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=50.96 E-value=16 Score=22.98 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=13.8
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 33 ~eLsf~~Gd~i~v~~~~ 49 (78)
T 1k1z_A 33 GFLRLNPGDIVELTKAE 49 (78)
T ss_dssp CCCCBCTTCEEEEEECC
T ss_pred CccCCCCCCEEEEEEcC
Confidence 45568999999999863
No 78
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=50.44 E-value=8.2 Score=24.20 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=12.5
Q ss_pred cceeeeCCEEEEEec
Q 032704 67 KMHVKAGDTVKVIAG 81 (135)
Q Consensus 67 k~~I~kGD~V~VI~G 81 (135)
.+.+++||.|.|+.-
T Consensus 26 eLs~~~Gd~i~v~~~ 40 (74)
T 1j3t_A 26 HLNFSKHDIITVLEQ 40 (74)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred ccCCCCCCEEEEEec
Confidence 456899999999875
No 79
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=50.16 E-value=11 Score=29.83 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=18.1
Q ss_pred eeeeCCEEEEEecCCCCeEeEEEEEEc
Q 032704 69 HVKAGDTVKVIAGCDKGKIGEITKVFR 95 (135)
Q Consensus 69 ~I~kGD~V~VI~GkdKGK~G~V~~V~r 95 (135)
+++.||.|++ .|..|+|.+|.-
T Consensus 128 pf~vGD~I~i-----~~~~G~V~~I~l 149 (285)
T 3udc_A 128 QFSVGDYVTI-----NGISGTVEEIGL 149 (285)
T ss_dssp SCCTTCEEEE-----TTEEEEEEEECS
T ss_pred CccCCCEEEE-----CCEEEEEEEeee
Confidence 4799999998 378999988753
No 80
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A
Probab=49.78 E-value=10 Score=22.54 Aligned_cols=15 Identities=13% Similarity=0.607 Sum_probs=12.6
Q ss_pred ccceeeeCCEEEEEe
Q 032704 66 HKMHVKAGDTVKVIA 80 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~ 80 (135)
..+.+++||.|.|+.
T Consensus 20 ~eLs~~~Gd~i~v~~ 34 (63)
T 3eg3_A 20 NTLSITKGEKLRVLG 34 (63)
T ss_dssp SBCCBCTTCEEEEEE
T ss_pred CccCCCCCCEEEEEE
Confidence 356689999999997
No 81
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=49.77 E-value=18 Score=21.34 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=13.5
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 15 ~eLs~~~Gd~i~v~~~~ 31 (58)
T 1jo8_A 15 NELTFVENDKIINIEFV 31 (58)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CCcccCCCCEEEEEEec
Confidence 35668999999999853
No 82
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1
Probab=49.74 E-value=12 Score=23.08 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=12.6
Q ss_pred ccceeeeCCEEEEEe
Q 032704 66 HKMHVKAGDTVKVIA 80 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~ 80 (135)
..+.+++||.|.|+.
T Consensus 26 ~eLs~~~Gd~i~v~~ 40 (71)
T 1csk_A 26 QDLPFCKGDVLTIVA 40 (71)
T ss_dssp TBCCBCTTCEEEEEE
T ss_pred CcCCCCCCCEEEEeE
Confidence 355689999999998
No 83
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=48.73 E-value=47 Score=23.36 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=17.1
Q ss_pred eeeCCEEEEEecCC--CC----eEeEEEEEEcc
Q 032704 70 VKAGDTVKVIAGCD--KG----KIGEITKVFRH 96 (135)
Q Consensus 70 I~kGD~V~VI~Gkd--KG----K~G~V~~V~r~ 96 (135)
+++||+|.|-.--- |. -+|.|+++...
T Consensus 4 f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~ 36 (98)
T 2ftc_K 4 FYVGSILRVTTADPYASGKISQFLGICIQRSGR 36 (98)
T ss_pred cCCCCEEEEEEEECCCceEeeeEEEEEEEEECC
Confidence 78999999875321 22 45666665544
No 84
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_G
Probab=48.22 E-value=7.2 Score=31.37 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=31.4
Q ss_pred eeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEec
Q 032704 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKD 104 (135)
Q Consensus 69 ~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVeg 104 (135)
.|.+|..+.+++|++.||.-.++++.. .|.+.|.|
T Consensus 74 si~pGtVlIil~Gr~~GKrvVfLkqL~-sgllLVtG 108 (219)
T 3iz5_G 74 TITPGTVLILLAGRYMGKRVVFLKQLQ-SGLLLITG 108 (219)
T ss_dssp HCSCCSCEECSSSSSSCCEECEEEESS-SSSEEECC
T ss_pred cccCCCEEEEeccccCCcEEEEEEecC-CCeEEEcC
Confidence 477899999999999999999999874 78888887
No 85
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A
Probab=48.20 E-value=36 Score=21.51 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=13.3
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 40 ~eLs~~~Gd~i~v~~~~ 56 (86)
T 2oi3_A 40 EDLSFQKGDQMVVLEES 56 (86)
T ss_dssp SCCCCCTTCEEEEEEES
T ss_pred CcCcCCCCCEEEEEEcC
Confidence 34668999999998743
No 86
>3izc_U 60S ribosomal protein RPL21 (L21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_U 3o58_T 3o5h_T 3u5e_T 3u5i_T 4b6a_T
Probab=47.91 E-value=11 Score=29.02 Aligned_cols=47 Identities=34% Similarity=0.569 Sum_probs=32.7
Q ss_pred eeeeCCEEEEEe------c----CCCCeEeEEEEEEccCCEEEE----------eccceeEEEecCC
Q 032704 69 HVKAGDTVKVIA------G----CDKGKIGEITKVFRHNSTVMV----------KDINLKTKHVKKR 115 (135)
Q Consensus 69 ~I~kGD~V~VI~------G----kdKGK~G~V~~V~r~~~~ViV----------egvN~~kkhvK~~ 115 (135)
..++||.|-|.- | .+-|+.|.|..|..+.--|+| +-||+...|+|++
T Consensus 33 ~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvtq~AvgiiVnk~v~gkil~KrI~VriEHik~s 99 (160)
T 3izc_U 33 VYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHS 99 (160)
T ss_dssp CCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEECSSSEEEEECCCSSSSCCCEEEEECTTSEEEC
T ss_pred HhcCCCEEEEeccCccCCCCCCcccCCCCeEEEeeCCcEEEEEEEEEECCEeeeeEEEEeHHHcccc
Confidence 568999998843 2 267999999887766544444 4566666677664
No 87
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A
Probab=47.75 E-value=11 Score=23.58 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=13.2
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 17 ~eLs~~~Gd~i~vl~~ 32 (69)
T 2ydl_A 17 DELTIKEGDIVTLINK 32 (69)
T ss_dssp TBCCBCTTCEEEEEES
T ss_pred CccccCCCCEEEEEEc
Confidence 4566899999999975
No 88
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=47.63 E-value=22 Score=24.99 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=30.2
Q ss_pred eeeeCCEEEEEe------c----CCCCeEeEEEEEEccCCEEEEeccc
Q 032704 69 HVKAGDTVKVIA------G----CDKGKIGEITKVFRHNSTVMVKDIN 106 (135)
Q Consensus 69 ~I~kGD~V~VI~------G----kdKGK~G~V~~V~r~~~~ViVegvN 106 (135)
..++||.|-|.- | .+-|+.|+|..+..+.--|+|..-+
T Consensus 33 ~yk~Gd~VdIk~~~svqKGmPhk~yHGkTG~V~~v~~~AvgV~Vnk~v 80 (96)
T 1vq8_Q 33 EFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGDAYKVDIVDGG 80 (96)
T ss_dssp CCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTEEEEEEEETT
T ss_pred HcCCCCEEEEEecCCccCCCCcccCCCCCeEEEeECCCEEEEEEeecC
Confidence 468999998874 4 2779999999999988778876543
No 89
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=47.26 E-value=41 Score=21.35 Aligned_cols=36 Identities=8% Similarity=0.119 Sum_probs=27.8
Q ss_pred cceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEE
Q 032704 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMV 102 (135)
Q Consensus 67 k~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViV 102 (135)
.-.+++|.+++++.-...--..+|++|+..++++.|
T Consensus 10 ~~~F~vGmkLEa~d~~~p~~~AtV~~v~~~~~~~~V 45 (69)
T 3sd4_A 10 GISFEVGAQLEARDRLKNWYPAHIEDIDYEEGKVLI 45 (69)
T ss_dssp TCCCSTTCEEEEECTTSCEEEEEEEEEETTTTEEEE
T ss_pred CCCcCCCCEEEEEECCCCccccEEEEEeccCCEEEE
Confidence 445899999999876655588999999766766643
No 90
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}
Probab=47.09 E-value=14 Score=23.39 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=13.3
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 20 ~eLs~~~Gd~i~v~~~~ 36 (73)
T 2lcs_A 20 NELRLAEGDIVFISYKH 36 (73)
T ss_dssp TBCCBCTTCEEEEEEEE
T ss_pred CccCCcCCCEEEEEEEc
Confidence 35668999999998743
No 91
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine kinase, signal transduction; NMR {Homo sapiens} PDB: 1wa7_A
Probab=47.08 E-value=11 Score=22.73 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=12.8
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 22 ~eLs~~~Gd~i~v~~~ 37 (65)
T 1w1f_A 22 DDLSFKKGEKMKVLEE 37 (65)
T ss_dssp SCCCBCTTCEEEEEEE
T ss_pred CcCCCCCCCEEEEEEc
Confidence 3456899999999874
No 92
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=46.97 E-value=38 Score=22.49 Aligned_cols=35 Identities=14% Similarity=0.098 Sum_probs=27.6
Q ss_pred eeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEe
Q 032704 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (135)
Q Consensus 69 ~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVe 103 (135)
.+..||-|..-==.=.=-.|+|.+|+..+++.+|+
T Consensus 13 ~f~vGddVLA~wtDGl~Y~gtI~~V~~~~gtC~V~ 47 (66)
T 2eqj_A 13 KFEEGQDVLARWSDGLFYLGTIKKINILKQSCFII 47 (66)
T ss_dssp CSCTTCEEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred cccCCCEEEEEEccCcEEEeEEEEEccCCcEEEEE
Confidence 47899999877534445689999999998887765
No 93
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.33 E-value=13 Score=23.70 Aligned_cols=16 Identities=38% Similarity=0.688 Sum_probs=13.0
Q ss_pred cceeeeCCEEEEEecC
Q 032704 67 KMHVKAGDTVKVIAGC 82 (135)
Q Consensus 67 k~~I~kGD~V~VI~Gk 82 (135)
.+.+++||.|.|+.-.
T Consensus 26 eLs~~~Gd~i~v~~~~ 41 (81)
T 2ysq_A 26 ELAFKAGDVIKVLDAS 41 (81)
T ss_dssp SCCCCTTCEEEEEECC
T ss_pred cCCCCCCCEEEEEEEc
Confidence 4568999999999853
No 94
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=46.27 E-value=16 Score=26.98 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=23.1
Q ss_pred ccceeeeCCEEEEEecC----------CCCeEeEEEEEE
Q 032704 66 HKMHVKAGDTVKVIAGC----------DKGKIGEITKVF 94 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk----------dKGK~G~V~~V~ 94 (135)
..-.+..||+|.|..-. -+||+|+|..+.
T Consensus 33 ~~prF~vGDrVrvr~~~p~gHtRlP~YvRGk~G~I~~~~ 71 (126)
T 2zzd_A 33 GKSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLV 71 (126)
T ss_dssp CSCSSCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEEE
T ss_pred CCCccCCCCEEEEccCCCCCceeccHHhCCCEEEEEEEe
Confidence 35568999999997643 589999998776
No 95
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Probab=45.83 E-value=13 Score=23.08 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=13.6
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 24 ~eLs~~~Gd~i~v~~~~ 40 (73)
T 2k9g_A 24 DELTIKEGDIVTLINKD 40 (73)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CeeeECCCCEEEEEECC
Confidence 45668999999999753
No 96
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=45.15 E-value=21 Score=22.48 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=14.0
Q ss_pred ccceeeeCCEEEEEecCC
Q 032704 66 HKMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gkd 83 (135)
..+.+++||.|.|+.=.+
T Consensus 28 ~eLs~~~Gd~i~vl~~~~ 45 (79)
T 1uhc_A 28 NELSVSANQKLKILEFKD 45 (79)
T ss_dssp SBCCBCTTCEEEEEESCC
T ss_pred CccCCCCCCEEEEEECCC
Confidence 356689999999998543
No 97
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}
Probab=45.08 E-value=13 Score=21.89 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=12.6
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 16 ~eLs~~~Gd~i~v~~~ 31 (59)
T 1yn8_A 16 NELRLAEGDIVFISYK 31 (59)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CCcCCCCCCEEEEEEc
Confidence 3556899999999863
No 98
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.65 E-value=14 Score=23.01 Aligned_cols=16 Identities=6% Similarity=0.412 Sum_probs=13.2
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 23 ~eLsf~~Gd~i~v~~~ 38 (73)
T 2dl7_A 23 DELSFPEGAIIRILNK 38 (73)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CcCCCCCCCEEEEEEC
Confidence 3466899999999985
No 99
>3j21_R 50S ribosomal protein L21E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=44.61 E-value=31 Score=24.25 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=27.4
Q ss_pred eeeeCCEEEEEe------c----CCCCeEeEEEEEEccCCEEEEec
Q 032704 69 HVKAGDTVKVIA------G----CDKGKIGEITKVFRHNSTVMVKD 104 (135)
Q Consensus 69 ~I~kGD~V~VI~------G----kdKGK~G~V~~V~r~~~~ViVeg 104 (135)
..++||.|-|.- | .+-||.|+|..|..+.--|+|..
T Consensus 34 ~yk~Gd~VdIk~~gsvqKGmPhk~yHGkTG~V~~vt~~Avgv~Vn~ 79 (97)
T 3j21_R 34 EFEVGQRVHIVIEPSYHKGMPDPRFHGRTGTVVGKRGEAYIVEIKD 79 (97)
T ss_dssp CCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTEEEEEEEE
T ss_pred HhcCCCEEEEEecCceEcCCCCcccCCCCeEEEeecCcEEEEEEEe
Confidence 568999998843 3 27899999999988876666653
No 100
>3dcl_A TM1086; SAD, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.25A {Thermotoga maritima} PDB: 3n99_A
Probab=44.54 E-value=31 Score=28.73 Aligned_cols=32 Identities=31% Similarity=0.401 Sum_probs=26.7
Q ss_pred eCCEEEEEecCCCCeEeEEEEEEccCCEEEEe
Q 032704 72 AGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (135)
Q Consensus 72 kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVe 103 (135)
.|.+..|++|.-||..|.|+-=.---+.|+|+
T Consensus 86 iGN~A~VvSG~AKG~~G~VtGkHGGieHVlV~ 117 (284)
T 3dcl_A 86 IGNEVIVMSGDAKGSRGFVTGKHGGVNHVLVH 117 (284)
T ss_dssp BTCEEEECSSTTTTCEEEEEEEETTTTEEEEE
T ss_pred cCceeEEeecccCCCcceEecccCCeeeEEEE
Confidence 58999999999999999998766655666664
No 101
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=43.97 E-value=14 Score=22.84 Aligned_cols=15 Identities=13% Similarity=0.326 Sum_probs=12.3
Q ss_pred ccceeeeCCEEEEEe
Q 032704 66 HKMHVKAGDTVKVIA 80 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~ 80 (135)
..+.+++||.|.|+.
T Consensus 23 ~eLs~~~Gd~i~v~~ 37 (69)
T 1uhf_A 23 GDLTFTEGEEILVTQ 37 (69)
T ss_dssp SBCCBCTTCEEEECE
T ss_pred CccCCCCCCEEEEEE
Confidence 355689999999986
No 102
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A
Probab=43.96 E-value=27 Score=20.62 Aligned_cols=17 Identities=12% Similarity=0.436 Sum_probs=13.7
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 18 ~eLs~~~Gd~i~v~~~~ 34 (60)
T 1oot_A 18 GDLPFRKGDVITILKKS 34 (60)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CEeeEcCCCEEEEEEeC
Confidence 45668999999999864
No 103
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=43.30 E-value=18 Score=28.73 Aligned_cols=29 Identities=24% Similarity=0.486 Sum_probs=22.8
Q ss_pred ccceeeeCCEEEEEecC----------CCCeEeEEEEEE
Q 032704 66 HKMHVKAGDTVKVIAGC----------DKGKIGEITKVF 94 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk----------dKGK~G~V~~V~ 94 (135)
..-++++||+|.|..-. -+||+|+|..+.
T Consensus 127 ~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~ 165 (219)
T 3qyh_B 127 ARARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDH 165 (219)
T ss_dssp SCCCCCTTCEEEECCCCCSSCCCSCGGGTTCEEEEEEEE
T ss_pred CCCCCCCCCEEEECCCCCCCcccccHHHCCCeeEEEEEe
Confidence 44568999999996542 579999998775
No 104
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Probab=43.14 E-value=22 Score=27.47 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=27.3
Q ss_pred cceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEe
Q 032704 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (135)
Q Consensus 67 k~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVe 103 (135)
-++++.||.|.|..|.. --.++|..+.+ .-.+.+.
T Consensus 26 VlRl~~Gd~v~l~dg~g-~~~a~i~~~~~-~~~~~i~ 60 (228)
T 1v6z_A 26 VLRARVGDRFTVFDGER-EALAEVVDLGP-PLRYRVL 60 (228)
T ss_dssp TSCCCTTCEEEEECSSC-EEEEEEEECCS-SCEEEEE
T ss_pred hccCCCCCEEEEEeCCc-EEEEEEEECCC-eEEEEEE
Confidence 46789999999999987 77788988877 5554443
No 105
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1
Probab=43.13 E-value=24 Score=21.59 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=13.4
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 18 ~eLsf~~Gd~i~v~~~~ 34 (65)
T 1b07_A 18 EDLPFKKGDILRIRDKP 34 (65)
T ss_dssp TBCCBCTTCEEEEEECS
T ss_pred CccCCcCCCEEEEEEec
Confidence 35568999999999853
No 106
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=43.00 E-value=23 Score=25.18 Aligned_cols=55 Identities=18% Similarity=0.126 Sum_probs=35.0
Q ss_pred eeeeeeee-eeeeeecCCCCCcc-------cccceeeeCCEEEEEecCCCCeEeEEEEEEccC
Q 032704 43 CLIVVRLK-RWERKECKPNSLPV-------LHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHN 97 (135)
Q Consensus 43 ~~~~~~~k-~wer~~~k~~~lp~-------~~k~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~ 97 (135)
+.++-.+- .|.+-+|.....-+ .....+.+||.|.|-.-++-...|.|+.+++..
T Consensus 36 G~Vi~~lgn~~y~V~~~dG~~~l~~i~GK~Rk~I~i~~GD~V~ve~~~~~~~kG~I~~~~~r~ 98 (117)
T 2oqk_A 36 GQVQRMLGNGRLDAYCFDGQKRLCHIRGKMRKKVWVNPGDIVLVSLRDFQDSKGDIILKYTPD 98 (117)
T ss_dssp EEEEEEEETTEEEEEETTSCEEEEECCHHHHHHSCCCTTCEEEEEECTTCTTEEEEEEECCHH
T ss_pred EEEEEEcCCCEEEEEeCCCCEEEEEEcCceecCCcCCCCCEEEEEEEcCCCCeEEEEEEechH
Confidence 55665555 68887775432211 124557799999997654444579999888753
No 107
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=42.72 E-value=45 Score=20.39 Aligned_cols=33 Identities=21% Similarity=0.062 Sum_probs=24.2
Q ss_pred eeeCCEEEEEe-cCCCCeEeEEEEEEccCCEEEE
Q 032704 70 VKAGDTVKVIA-GCDKGKIGEITKVFRHNSTVMV 102 (135)
Q Consensus 70 I~kGD~V~VI~-GkdKGK~G~V~~V~r~~~~ViV 102 (135)
+++||.|...- +..+=-.++|+++...++.+.|
T Consensus 4 ~~~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V 37 (59)
T 1mhn_A 4 WKVGDKCSAIWSEDGCIYPATIASIDFKRETCVV 37 (59)
T ss_dssp CCTTCEEEEECTTTSCEEEEEEEEEETTTTEEEE
T ss_pred CCcCCEEEEEECCCCCEEEEEEEEEcCCCCEEEE
Confidence 58899999885 3445578999999876565544
No 108
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=42.69 E-value=24 Score=21.96 Aligned_cols=17 Identities=18% Similarity=0.382 Sum_probs=13.5
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 25 ~eLs~~~Gd~i~v~~~~ 41 (77)
T 2enm_A 25 NELTVTEGEIITVTNPN 41 (77)
T ss_dssp SBCCCCTTCEEEEEESC
T ss_pred CeecCCCCCEEEEeEcc
Confidence 35568999999999853
No 109
>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=41.23 E-value=19 Score=22.58 Aligned_cols=16 Identities=19% Similarity=0.437 Sum_probs=13.3
Q ss_pred cceeeeCCEEEEEecC
Q 032704 67 KMHVKAGDTVKVIAGC 82 (135)
Q Consensus 67 k~~I~kGD~V~VI~Gk 82 (135)
.+.+++||.|.|+.-.
T Consensus 31 eLs~~~Gd~i~v~~~~ 46 (80)
T 2v1r_A 31 EVALKKGDLMAILSKK 46 (80)
T ss_dssp BCCBCTTCEEEEEEEE
T ss_pred EecCCCCCEEEEEECC
Confidence 5668999999999854
No 110
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=41.10 E-value=14 Score=23.50 Aligned_cols=16 Identities=25% Similarity=0.594 Sum_probs=12.9
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 32 ~eLsf~~Gd~i~Vl~~ 47 (72)
T 2l0a_A 32 NELTFKAGEIITVLDD 47 (72)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CccCCCCCCEEEEEEe
Confidence 3566899999999973
No 111
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.10 E-value=22 Score=22.40 Aligned_cols=18 Identities=17% Similarity=0.425 Sum_probs=14.3
Q ss_pred ccceeeeCCEEEEEecCC
Q 032704 66 HKMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gkd 83 (135)
..+.+++||.|.|+.-.+
T Consensus 28 ~eLs~~~Gd~i~v~~~~~ 45 (78)
T 2dl5_A 28 DELTIEEHEVLEVIEDGD 45 (78)
T ss_dssp TBCCBCSSEEEEEEECCS
T ss_pred CCCCCCCCCEEEEEeccC
Confidence 356689999999998653
No 112
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.09 E-value=15 Score=23.16 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=13.4
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 32 ~eLs~~~Gd~i~v~~~~ 48 (79)
T 1x69_A 32 DEISFDPDDIITNIEMI 48 (79)
T ss_dssp SBCCCCTTCEEEEEEEC
T ss_pred CCcCcCCCCEEEEeEec
Confidence 35668999999999753
No 113
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}
Probab=40.93 E-value=28 Score=21.17 Aligned_cols=17 Identities=24% Similarity=0.532 Sum_probs=13.4
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 21 ~eLs~~~Gd~i~v~~~~ 37 (71)
T 2jt4_A 21 DELTIKSGDKVYILDDK 37 (71)
T ss_dssp TBCCBCTTCEEEEEESS
T ss_pred CcccCCCCCEEEEEECC
Confidence 35568999999999843
No 114
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A
Probab=40.89 E-value=31 Score=20.59 Aligned_cols=16 Identities=13% Similarity=0.524 Sum_probs=13.1
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 21 ~eLs~~~Gd~i~v~~~ 36 (64)
T 2jte_A 21 DELTFREGEIIHLISK 36 (64)
T ss_dssp SBCCBCTTCEEEEEES
T ss_pred CccCCCCCCEEEEEEC
Confidence 3566899999999975
No 115
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.89 E-value=13 Score=23.87 Aligned_cols=15 Identities=20% Similarity=0.481 Sum_probs=12.5
Q ss_pred ccceeeeCCEEEEEe
Q 032704 66 HKMHVKAGDTVKVIA 80 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~ 80 (135)
..+.+++||.|.|+.
T Consensus 23 ~eLsf~~Gd~i~v~~ 37 (85)
T 2dlp_A 23 SLLSFHRGDLIKLLP 37 (85)
T ss_dssp SBCCBCTTCEEEECC
T ss_pred CCccCcCCCEEEEEE
Confidence 356689999999996
No 116
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=40.84 E-value=19 Score=22.93 Aligned_cols=16 Identities=19% Similarity=0.437 Sum_probs=13.2
Q ss_pred cceeeeCCEEEEEecC
Q 032704 67 KMHVKAGDTVKVIAGC 82 (135)
Q Consensus 67 k~~I~kGD~V~VI~Gk 82 (135)
.+.+++||.|.|+.-.
T Consensus 24 ELsf~~Gd~i~Vl~~~ 39 (69)
T 1nm7_A 24 EVALKKGDLMAILSKK 39 (69)
T ss_dssp CCCCCTTCEEEECCSS
T ss_pred ccCCCCCCEEEEEecC
Confidence 5568999999999754
No 117
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.60 E-value=13 Score=22.91 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=13.6
Q ss_pred ccceeeeCCEEEEEecCC
Q 032704 66 HKMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gkd 83 (135)
..+.+++||.|.|+.-.+
T Consensus 22 ~eLs~~~Gd~i~v~~~~~ 39 (68)
T 2dmo_A 22 EELQVMPGNIVFVLKKGN 39 (68)
T ss_dssp SSCCCCTTCEEEECEECS
T ss_pred CCCCCCCCCEEEEEEeCC
Confidence 356689999999986433
No 118
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=40.47 E-value=15 Score=22.53 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=13.1
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 22 ~eLs~~~Gd~i~v~~~ 37 (70)
T 2da9_A 22 DELTIKEGDIVTLINK 37 (70)
T ss_dssp TBCCCCTTEEEEEEEC
T ss_pred CEeeEcCCCEEEEEEC
Confidence 4566899999999975
No 119
>2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification, PUA domain, M3U, SAM, structural genomics, NPPSFA; HET: SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A*
Probab=40.40 E-value=14 Score=28.70 Aligned_cols=34 Identities=6% Similarity=0.039 Sum_probs=25.6
Q ss_pred ccceeeeCCEEEEEecCCCCeEeEEEEEEccCCEE
Q 032704 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTV 100 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~V 100 (135)
.-++++.||.|.| .|...--.++|..+.++.-.+
T Consensus 25 ~VlRl~~Gd~v~l-dg~g~~~~a~i~~~~~~~~~~ 58 (229)
T 2egv_A 25 RVRRIEKDEEFGV-IHEGKIYVCKVRREDKREISC 58 (229)
T ss_dssp HHTTCCTTCCEEE-EETTEEEEEEEEEECSSEEEE
T ss_pred HhhcCCCCCEEEE-eCCCCEEEEEEEEecCCEEEE
Confidence 3467899999999 998666678898887664333
No 120
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=40.10 E-value=20 Score=28.57 Aligned_cols=29 Identities=28% Similarity=0.439 Sum_probs=22.9
Q ss_pred ccceeeeCCEEEEEecC----------CCCeEeEEEEEE
Q 032704 66 HKMHVKAGDTVKVIAGC----------DKGKIGEITKVF 94 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk----------dKGK~G~V~~V~ 94 (135)
..-.+.+||+|.|..-. -+||+|+|..+.
T Consensus 135 ~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~Rgk~G~I~~~~ 173 (226)
T 1ugp_B 135 RPPKFKEGDVVRFSTASPKGHARRARYVRGKTGTVVKHH 173 (226)
T ss_dssp SCCSCCTTCEEEECCCCCSSCCCCCGGGTTCEEEEEEEE
T ss_pred CCCcCCCCCeEEEccCCCCCcccccHHhCCCeEEEEEEe
Confidence 34568999999997643 589999998776
No 121
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Probab=39.82 E-value=9.9 Score=23.68 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=14.0
Q ss_pred ccceeeeCCEEEEEecCC
Q 032704 66 HKMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gkd 83 (135)
..+.+++||.|.|+.-.+
T Consensus 22 ~eLs~~~Gd~i~v~~~~~ 39 (73)
T 2dbm_A 22 GELGFKEGDIITLTNQID 39 (73)
T ss_dssp TCCCBCTTCEEECCBCSS
T ss_pred CCccCCCCCEEEEEEecC
Confidence 356689999999988543
No 122
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.80 E-value=11 Score=23.13 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=13.3
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 23 ~eLs~~~Gd~i~v~~~~ 39 (70)
T 2ega_A 23 SELSLQAGEVVDVIEKN 39 (70)
T ss_dssp SSCCCCTTCBCEEEEEC
T ss_pred CcccCCCCCEEEEEEcc
Confidence 34568999999998853
No 123
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.77 E-value=25 Score=22.02 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=14.0
Q ss_pred ccceeeeCCEEEEEecCC
Q 032704 66 HKMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gkd 83 (135)
..+.+++||.|.|+.-.+
T Consensus 29 ~eLsf~~Gd~i~v~~~~~ 46 (76)
T 2csi_A 29 AELTFCTGDIITVFGEID 46 (76)
T ss_dssp TSCCCCTTCEEEEESSCC
T ss_pred CcccCCCCCEEEEeEecC
Confidence 456689999999997543
No 124
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}
Probab=39.74 E-value=11 Score=23.43 Aligned_cols=16 Identities=19% Similarity=0.495 Sum_probs=12.8
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 16 ~eLs~~~Gd~i~v~~~ 31 (65)
T 2fei_A 16 DELELKVGDIIDINEE 31 (65)
T ss_dssp TBCCCCTTCEEECCCC
T ss_pred CccCCCCCCEEEEEEe
Confidence 3566899999999864
No 125
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A
Probab=39.58 E-value=20 Score=23.19 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=13.7
Q ss_pred cceeeeCCEEEEEecCC
Q 032704 67 KMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 67 k~~I~kGD~V~VI~Gkd 83 (135)
.+.+++||.|.|+.-.+
T Consensus 31 eLsf~~Gd~i~v~~~~~ 47 (92)
T 1jqq_A 31 EVALKKGDLMAILSKKD 47 (92)
T ss_dssp BCCBCTTCEEEEEEEEC
T ss_pred CcCCCCCCEEEEEECCC
Confidence 56689999999998643
No 126
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}
Probab=39.38 E-value=24 Score=21.59 Aligned_cols=14 Identities=7% Similarity=0.280 Sum_probs=11.7
Q ss_pred cceeeeCCEEEEEe
Q 032704 67 KMHVKAGDTVKVIA 80 (135)
Q Consensus 67 k~~I~kGD~V~VI~ 80 (135)
.+.+++||.|.|+.
T Consensus 23 eLsf~~Gd~i~v~~ 36 (70)
T 2vkn_A 23 EISFEQNEILQVSD 36 (70)
T ss_dssp BCCBCTTCEEEEEC
T ss_pred cccCCCCCEEEEEE
Confidence 55689999999985
No 127
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}
Probab=39.24 E-value=22 Score=21.79 Aligned_cols=16 Identities=19% Similarity=0.474 Sum_probs=12.8
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 22 ~eLs~~~Gd~i~v~~~ 37 (68)
T 1wxt_A 22 RELTVVQGEKLEVLDH 37 (68)
T ss_dssp SBCCBCTTCEEEEEEC
T ss_pred CcCCCCCCCEEEEEEc
Confidence 3556899999999863
No 128
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.91 E-value=25 Score=25.03 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=23.0
Q ss_pred ccceeeeCCEEEEEecCCC-CeEeEEEEEEccC
Q 032704 66 HKMHVKAGDTVKVIAGCDK-GKIGEITKVFRHN 97 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~GkdK-GK~G~V~~V~r~~ 97 (135)
++..|++||.|.|---++- -..|.|+.++++.
T Consensus 50 k~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~~~~ 82 (111)
T 2dgy_A 50 KNIWIKRGDFLIVDPIEEGEKVKAEISFVLCKD 82 (111)
T ss_dssp SCCCCCSSCEEEEEECSSCSSCCEEEEEECCHH
T ss_pred ccEEEcCCCEEEEEecccCCcceEEEEEEeCHH
Confidence 3556999999999765543 4568887777653
No 129
>2zkr_q 60S ribosomal protein L21; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=38.79 E-value=7.8 Score=29.76 Aligned_cols=47 Identities=34% Similarity=0.646 Sum_probs=31.8
Q ss_pred eeeeCCEEEEEe------c----CCCCeEeEEEEEEccCCEEEEe----------ccceeEEEecCC
Q 032704 69 HVKAGDTVKVIA------G----CDKGKIGEITKVFRHNSTVMVK----------DINLKTKHVKKR 115 (135)
Q Consensus 69 ~I~kGD~V~VI~------G----kdKGK~G~V~~V~r~~~~ViVe----------gvN~~kkhvK~~ 115 (135)
..++||.|-|.- | .+-|+.|+|..+..+.-.|+|. -+|+..-|+|++
T Consensus 33 ~yk~GD~VdIk~~~svqKGmPhk~yHGkTGrV~~v~~~AvgViVnk~v~~kil~Kri~vr~eHik~s 99 (160)
T 2zkr_q 33 IYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHS 99 (160)
T ss_dssp CCCTTCEEEECCCTTCCSSCCCGGGTTCEEEECCCCSSSEEEEEEECCSSCCSCEEEEECGGGEEEC
T ss_pred HcCCCCEEEEEecCCcccCCCCcccCCCCeEEEeEcCCEEEEEEEEeeCCeeeeeEEEcCHHHcCcc
Confidence 467999998763 4 2679999998776666555554 344444577664
No 130
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Probab=38.66 E-value=20 Score=21.94 Aligned_cols=16 Identities=25% Similarity=0.572 Sum_probs=13.0
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 21 ~eLs~~~Gd~i~v~~~ 36 (71)
T 1u5s_A 21 EELNFEKGETMEVIEK 36 (71)
T ss_dssp SBCCCCSSCCEEEEEC
T ss_pred CcccCCCCCEEEEEEC
Confidence 3456899999999985
No 131
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.60 E-value=30 Score=22.03 Aligned_cols=16 Identities=25% Similarity=0.798 Sum_probs=13.0
Q ss_pred cceeeeCCEEEEEecC
Q 032704 67 KMHVKAGDTVKVIAGC 82 (135)
Q Consensus 67 k~~I~kGD~V~VI~Gk 82 (135)
.+.+++||.|.|+.-.
T Consensus 33 eLsf~~Gd~i~v~~~~ 48 (81)
T 1x6g_A 33 ELAFRKGDVVTILEAC 48 (81)
T ss_dssp CCCBCTTCEEEEEECC
T ss_pred CCCCCCCCEEEEEecc
Confidence 4558999999999853
No 132
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A
Probab=38.55 E-value=20 Score=22.43 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=13.5
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 24 ~eLs~~~Gd~i~v~~~~ 40 (74)
T 1gbq_A 24 DELSFKRGDILKVLNEE 40 (74)
T ss_dssp TBCCBCTTCEEECCBCS
T ss_pred CeeeEcCCCEEEEeEec
Confidence 35668999999999754
No 133
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=38.51 E-value=16 Score=25.79 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=22.7
Q ss_pred cceeeeCCEEEEEecCCC-CeEeEEEEEEccC
Q 032704 67 KMHVKAGDTVKVIAGCDK-GKIGEITKVFRHN 97 (135)
Q Consensus 67 k~~I~kGD~V~VI~GkdK-GK~G~V~~V~r~~ 97 (135)
+..|+.||.|.|---++- -..|.|+.++..+
T Consensus 56 ~IwI~~GD~VlVe~~~yd~~~Kg~Iv~r~~~d 87 (102)
T 1jt8_A 56 RIWVREGDVVIVKPWEVQGDQKCDIIWRYTKT 87 (102)
T ss_dssp HHCCCSCEEEEECCBCCTTSEEEEEEEESSCS
T ss_pred eEEecCCCEEEEEeccCCCCceEEEEEEeCHH
Confidence 456999999999655544 4669998877543
No 134
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Probab=38.43 E-value=34 Score=19.96 Aligned_cols=16 Identities=25% Similarity=0.623 Sum_probs=13.1
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 17 ~eLs~~~Gd~i~v~~~ 32 (60)
T 2v1q_A 17 DELTIKSGDKVYILDD 32 (60)
T ss_dssp TBCCBCTTCEEEEEES
T ss_pred CCccCCCCCEEEEEeC
Confidence 3566899999999984
No 135
>1gxi_E Photosystem I reaction center subunit IV; photosynthesis, PSAE SUB-UNIT, thylakoid; NMR {Synechocystis SP} SCOP: b.34.4.2 PDB: 1pse_A 1psf_A
Probab=38.18 E-value=6.5 Score=26.76 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=24.6
Q ss_pred eeeCCEEEEEecC--CCCeEeEEEEEEccC
Q 032704 70 VKAGDTVKVIAGC--DKGKIGEITKVFRHN 97 (135)
Q Consensus 70 I~kGD~V~VI~Gk--dKGK~G~V~~V~r~~ 97 (135)
|.+||+|.|++=. .-..+|+|.+|+..+
T Consensus 2 i~RGskVrIlR~ESYWyn~vGtVasVD~sg 31 (73)
T 1gxi_E 2 LNRGDKVRIKRTESYWYGDVGTVASVEKSG 31 (73)
T ss_dssp CCTTCCEEECCSSSTTTTEEECBCCTTTCC
T ss_pred ccCCCEEEEccccceeecCcceEEEEcCCC
Confidence 6799999999986 789999999999863
No 136
>1dj7_B Ferredoxin thioredoxin reductase: variable chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: b.34.4.3 PDB: 2pu9_B 2pvo_B 2puo_B 2puk_B 2pvd_B 2pvg_B
Probab=38.14 E-value=20 Score=24.41 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=19.9
Q ss_pred eeCCEEEEEec--------------CCCCeEeEEEEEEcc
Q 032704 71 KAGDTVKVIAG--------------CDKGKIGEITKVFRH 96 (135)
Q Consensus 71 ~kGD~V~VI~G--------------kdKGK~G~V~~V~r~ 96 (135)
+.||+|.|.+. .-+|.+|+|.++..+
T Consensus 2 k~GdrVrV~~sv~Vyh~P~~r~~~fDl~GmEGeV~~~v~~ 41 (75)
T 1dj7_B 2 NVGDRVRVTSSVVVYHHPEHKKTAFDLQGMEGEVAAVLTE 41 (75)
T ss_dssp CTTCEEEECSCCEESCCTTSTTSCEECTTCEEEEEEECSE
T ss_pred CCCCEEEEcccEEEEeCCccCCCCcccccCEEEEEEEEee
Confidence 57899888642 247999999998754
No 137
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=37.95 E-value=43 Score=21.27 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=19.5
Q ss_pred eeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEe
Q 032704 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (135)
Q Consensus 69 ~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVe 103 (135)
.++.||+|.|. |++++.+++++.+.
T Consensus 45 ~~~~Gd~V~v~----------V~~vd~~~~~i~ls 69 (80)
T 2k52_A 45 NLNVGDEIIVQ----------AIDVRPEKREIDFK 69 (80)
T ss_dssp GCCTTCEEEEE----------EEEEETTTTEEEEE
T ss_pred eeCCCCEEEEE----------EEEEECCCCEEEEE
Confidence 47999999874 78888887777654
No 138
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.76 E-value=33 Score=22.59 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=12.4
Q ss_pred ccceeeeCCEEEEEe
Q 032704 66 HKMHVKAGDTVKVIA 80 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~ 80 (135)
..+.+++||.|.|+.
T Consensus 40 ~eLsf~~Gd~i~vl~ 54 (97)
T 2csq_A 40 EELPFKEGQIIKVYG 54 (97)
T ss_dssp TBCCBCTTCEEEEEE
T ss_pred CccCCCCCCEEEEEE
Confidence 456689999999994
No 139
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=37.75 E-value=31 Score=25.76 Aligned_cols=33 Identities=9% Similarity=0.149 Sum_probs=24.7
Q ss_pred ccceeeeCCEEEEEecCCCCeEeEEEEEEccCC
Q 032704 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNS 98 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~ 98 (135)
.+..|++||.|.|---++.-..|.|+.++....
T Consensus 66 k~IwI~~GD~VlVe~~~yd~~KG~Ii~r~~~de 98 (143)
T 1d7q_A 66 KKVWINTSDIILVGLRDYQDNKADVILKYNADE 98 (143)
T ss_dssp GSCCCCTTCEEEEECSSSSSSCCEEEEEECTTT
T ss_pred eeEEecCCCEEEEeeccCCCCeEEEEEEeCHHH
Confidence 456799999999976654445599998886654
No 140
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=37.20 E-value=24 Score=20.75 Aligned_cols=18 Identities=17% Similarity=0.392 Sum_probs=14.1
Q ss_pred ccceeeeCCEEEEEecCC
Q 032704 66 HKMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gkd 83 (135)
..+.+++||.|.|+.-.+
T Consensus 16 ~eLs~~~Gd~i~v~~~~~ 33 (58)
T 2bz8_A 16 DELTISVGEIITNIRKED 33 (58)
T ss_dssp TBCCBCTTCEEEEEECCT
T ss_pred CEeeECCCCEEEEEEeCC
Confidence 356689999999998643
No 141
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=37.18 E-value=19 Score=28.77 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=22.0
Q ss_pred cceeeeCCEEEEEecC----------CCCeEeEEEEEE
Q 032704 67 KMHVKAGDTVKVIAGC----------DKGKIGEITKVF 94 (135)
Q Consensus 67 k~~I~kGD~V~VI~Gk----------dKGK~G~V~~V~ 94 (135)
.-++++||+|.|..-. -+||+|+|..+.
T Consensus 139 ~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~ 176 (229)
T 3hht_B 139 SPRFKVGERIKTKNIHPTGHTRFPRYARDKYGVIDEVY 176 (229)
T ss_dssp CCSCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEEE
T ss_pred CCCCCCCCEEEECCCCCCCcccCcHHHCCCeeEEEEEe
Confidence 4458999999996532 579999998774
No 142
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.08 E-value=26 Score=22.39 Aligned_cols=18 Identities=0% Similarity=0.278 Sum_probs=14.1
Q ss_pred ccceeeeCCEEEEEecCC
Q 032704 66 HKMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gkd 83 (135)
..+.+++||.|.|+.-.+
T Consensus 34 ~eLs~~~Gd~i~v~~~~~ 51 (85)
T 2yuq_A 34 QELALRRNEEYCLLDSSE 51 (85)
T ss_dssp SBCCCCBTEEEEEEECCS
T ss_pred CcCCCCCCCEEEEEEecC
Confidence 356689999999997543
No 143
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=36.93 E-value=75 Score=20.58 Aligned_cols=35 Identities=20% Similarity=0.114 Sum_probs=26.8
Q ss_pred eeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEe
Q 032704 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (135)
Q Consensus 69 ~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVe 103 (135)
.+..||-|.+---.-+=--|+|.+|+..+.+..|.
T Consensus 3 ~f~~GedVLarwsDG~fYlGtI~~V~~~~~~clV~ 37 (58)
T 4hcz_A 3 RLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQ 37 (58)
T ss_dssp SCCTTCEEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred ccccCCEEEEEecCCCEEeEEEEEEecCCCEEEEE
Confidence 36789998886555555689999999998776664
No 144
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=36.83 E-value=28 Score=23.90 Aligned_cols=27 Identities=19% Similarity=0.054 Sum_probs=19.5
Q ss_pred eeeeCCEEEEEe-cCCCCeEeEEEEEEc
Q 032704 69 HVKAGDTVKVIA-GCDKGKIGEITKVFR 95 (135)
Q Consensus 69 ~I~kGD~V~VI~-GkdKGK~G~V~~V~r 95 (135)
.+..||+|.|.. |...+..|+|.-|=.
T Consensus 7 ~~~VG~rV~V~~~~~~~~~~GtVryvG~ 34 (95)
T 1whl_A 7 GIDVGCPVKVQLRSGEEKFPGVVRFRGP 34 (95)
T ss_dssp CCCSSCEEEEECSSSSCEEEEEEEEECC
T ss_pred cCcCCCEEEEecCCCccceeEEEEEeCc
Confidence 478999999973 433467888877654
No 145
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=36.81 E-value=24 Score=23.30 Aligned_cols=16 Identities=25% Similarity=0.632 Sum_probs=13.2
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 44 ~ELsf~~GD~I~Vl~~ 59 (89)
T 2rf0_A 44 EELTLRRGDRVQVLSQ 59 (89)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CccccCCCCEEEEEec
Confidence 3566899999999985
No 146
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=36.51 E-value=33 Score=22.08 Aligned_cols=16 Identities=25% Similarity=0.572 Sum_probs=13.2
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 32 ~eLs~~~Gd~i~v~~~ 47 (91)
T 1wx6_A 32 EELNFEKGETMEVIEK 47 (91)
T ss_dssp SBCCCCTTCEEEEEEC
T ss_pred CcccCCCCCEEEEEEC
Confidence 3566899999999985
No 147
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=36.50 E-value=16 Score=28.98 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=25.1
Q ss_pred eeeeCCEEEEEecCCCCeEeEEEEEEc--------cCCEEEEecccee
Q 032704 69 HVKAGDTVKVIAGCDKGKIGEITKVFR--------HNSTVMVKDINLK 108 (135)
Q Consensus 69 ~I~kGD~V~VI~GkdKGK~G~V~~V~r--------~~~~ViVegvN~~ 108 (135)
+++.||.|++ .|..|+|.+|.- ++..++|-+-.+.
T Consensus 129 pf~vGD~I~i-----~g~~G~V~~I~l~~T~i~t~dg~~v~IPNs~l~ 171 (286)
T 2vv5_A 129 PFRAGEYVDL-----GGVAGTVLSVQIFSTTMRTADGKIIVIPNGKII 171 (286)
T ss_dssp SSCTTCEEES-----SSCEEEEEEECSSEEEEECTTSCEEEEEHHHHH
T ss_pred CccCCCEEEE-----CCEEEEEEEEEeEEEEEEeCCCCEEEechHHHh
Confidence 4799999997 378999988863 4445666665544
No 148
>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A
Probab=36.48 E-value=18 Score=21.53 Aligned_cols=16 Identities=13% Similarity=0.391 Sum_probs=12.7
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 16 ~eLs~~~Gd~i~v~~~ 31 (60)
T 1i07_A 16 SELSVMKDDVLEILDD 31 (60)
T ss_dssp TBCCBCTTCEEEECGG
T ss_pred CcccCCCCCEEEEEEc
Confidence 3556899999999863
No 149
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A
Probab=36.38 E-value=30 Score=21.20 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=13.0
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 23 ~eLs~~~Gd~i~v~~~ 38 (68)
T 2k2m_A 23 SELSVKQRDVLEVLDD 38 (68)
T ss_dssp SBCCBCTTCEEEEEEC
T ss_pred CcccCCCCCEEEEEEc
Confidence 3566899999999974
No 150
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=36.26 E-value=33 Score=23.42 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=18.6
Q ss_pred eeeeCCEEEEEecCCCCeEeEEEEEEc
Q 032704 69 HVKAGDTVKVIAGCDKGKIGEITKVFR 95 (135)
Q Consensus 69 ~I~kGD~V~VI~GkdKGK~G~V~~V~r 95 (135)
.|+.||+|.|..| ++.|+|.-|=+
T Consensus 5 ~i~vG~Rv~v~~~---~~~G~VryvG~ 28 (84)
T 4b6m_A 5 TIHVGDRCLCRPG---DRLGSVRFVGR 28 (84)
T ss_dssp CCCTTCEEEETTT---TEEEEEEEEEE
T ss_pred CcccCCEEEEcCC---CeEEEEEEEec
Confidence 4789999998543 57898888864
No 151
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.93 E-value=26 Score=21.36 Aligned_cols=15 Identities=13% Similarity=0.399 Sum_probs=12.4
Q ss_pred ccceeeeCCEEEEEe
Q 032704 66 HKMHVKAGDTVKVIA 80 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~ 80 (135)
..+.+++||.|.|+.
T Consensus 22 ~eLs~~~Gd~i~v~~ 36 (68)
T 1wxb_A 22 NELSVLKDEVLEVLE 36 (68)
T ss_dssp SBCCBCTTCEEEEEE
T ss_pred CccCCCCCCEEEEEE
Confidence 345689999999997
No 152
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}
Probab=35.74 E-value=25 Score=22.27 Aligned_cols=20 Identities=10% Similarity=0.139 Sum_probs=15.4
Q ss_pred ccceeeeCCEEEEEecCCCC
Q 032704 66 HKMHVKAGDTVKVIAGCDKG 85 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~GkdKG 85 (135)
..+.+++||.|.|+.-.+.|
T Consensus 25 ~eLsf~~Gd~i~v~~~~~~~ 44 (80)
T 2i0n_A 25 SLLPFKRNDIITITFKDQEN 44 (80)
T ss_dssp SSCCBCSSEEEEEEEESSSS
T ss_pred CCcCCCCCCEEEEEEecCCC
Confidence 34568999999999875544
No 153
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A
Probab=35.73 E-value=19 Score=22.53 Aligned_cols=16 Identities=6% Similarity=0.358 Sum_probs=12.8
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 19 ~ELsf~~Gd~i~vl~~ 34 (67)
T 2b86_A 19 QELDIKKNERLWLLDD 34 (67)
T ss_dssp TSCCBCTTCEEEEEEC
T ss_pred CccccCCCCEEEEEec
Confidence 3556899999999973
No 154
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.43 E-value=36 Score=20.71 Aligned_cols=17 Identities=6% Similarity=0.270 Sum_probs=13.3
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 22 ~eLs~~~Gd~i~vl~~~ 38 (70)
T 2ct4_A 22 GTISMAEGEDLSLMEED 38 (70)
T ss_dssp TCCCBCTTCEEEEEECC
T ss_pred CcCCCCCCCEEEEEecc
Confidence 34568999999999754
No 155
>3izc_a 60S ribosomal protein RPL27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_a 3u5e_Z 3u5i_Z 4b6a_Z
Probab=34.73 E-value=2 Score=32.38 Aligned_cols=41 Identities=27% Similarity=0.270 Sum_probs=34.2
Q ss_pred eeeCCEEEEEecCCCCeEeEEEEEEccC------CEEEEeccceeEE
Q 032704 70 VKAGDTVKVIAGCDKGKIGEITKVFRHN------STVMVKDINLKTK 110 (135)
Q Consensus 70 I~kGD~V~VI~GkdKGK~G~V~~V~r~~------~~ViVegvN~~kk 110 (135)
+++|-.|.|++|++.|+...|++...++ +.++|-||....+
T Consensus 5 ~kpGkVvivl~GryaGkKaVivk~~d~gt~d~py~halVaGIdryP~ 51 (136)
T 3izc_a 5 LKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPL 51 (136)
T ss_dssp CCCCCCCBCCCSSSSCCBCBCCCCSSSCSCCSSSCCSCCBCCSSSSC
T ss_pred ccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEecccCCh
Confidence 6789999999999999999999987665 3688989876543
No 156
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=34.22 E-value=11 Score=23.55 Aligned_cols=15 Identities=13% Similarity=0.302 Sum_probs=12.3
Q ss_pred ccceeeeCCEEEEEe
Q 032704 66 HKMHVKAGDTVKVIA 80 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~ 80 (135)
..+.+++||.|.|+.
T Consensus 25 ~eLsf~~Gd~i~v~~ 39 (72)
T 1ugv_A 25 SELSFTAGTVFDNVH 39 (72)
T ss_dssp SBCCBCTTCEEBSCC
T ss_pred CEeCCcCCCEEEEEE
Confidence 456689999999886
No 157
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=34.13 E-value=56 Score=26.33 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=27.4
Q ss_pred eeeeCCEEEEEecCCCCeEeEEEEEEccCCEE---EEeccceeE
Q 032704 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTV---MVKDINLKT 109 (135)
Q Consensus 69 ~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~V---iVegvN~~k 109 (135)
...+||.|.+-... +..|.|.+|.+.+|.+ .+.++...-
T Consensus 50 ~~~vGD~V~~~~~~--~~~~~i~~i~~R~~~l~R~~~anvD~v~ 91 (307)
T 1t9h_A 50 TPLVGDYVVYQAEN--DKEGYLMEIKERTNELIRPPICNVDQAV 91 (307)
T ss_dssp CCCBTCEEEEECCT--TSCEEEEEECCCSCEETTTTEECCCEEE
T ss_pred CCCCCeEEEEEEcC--CCceEEEEEcchhhhhhHHHHHhCCEEE
Confidence 35699999986432 3479999999988876 355555443
No 158
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=33.96 E-value=54 Score=25.27 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=31.3
Q ss_pred ccceeeeCCEEEEEecC----CCCeEeEEEEEEccCCEEEEeccc
Q 032704 66 HKMHVKAGDTVKVIAGC----DKGKIGEITKVFRHNSTVMVKDIN 106 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk----dKGK~G~V~~V~r~~~~ViVegvN 106 (135)
.+..+.+||.|-..... +---.++|++++.++++..|+|+-
T Consensus 41 ~~~~~~~G~~VAakvk~~~~~~~WILa~Vv~~~~~~~rYeV~D~d 85 (180)
T 3mea_A 41 GDYVARPGDKVAARVKAVDGDEQWILAEVVSYSHATNKYEVDDID 85 (180)
T ss_dssp TTCCCCTTCEEEEEEECCC--EEEEEEEEEEEETTTTEEEEEECC
T ss_pred CCcccCCCCEEEEEcCCCCCCccEEEEEEEEEcCCCCEEEEecCC
Confidence 45568899999887643 234578899999999999998774
No 159
>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}
Probab=33.94 E-value=30 Score=21.19 Aligned_cols=16 Identities=25% Similarity=0.611 Sum_probs=13.1
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 26 ~eLs~~~Gd~i~v~~~ 41 (74)
T 2m0y_A 26 DELSLQIGDTVHILET 41 (74)
T ss_dssp SBCCEETTEEEEEEEB
T ss_pred CcccCCCCCEEEEEEc
Confidence 4567899999999875
No 160
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Probab=33.60 E-value=31 Score=20.88 Aligned_cols=16 Identities=13% Similarity=0.569 Sum_probs=12.8
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 22 ~eLs~~~Gd~i~v~~~ 37 (70)
T 2cuc_A 22 EELDLQKGEGIRVLGK 37 (70)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CcCCCCCCCEEEEEEe
Confidence 3456899999999864
No 161
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=33.53 E-value=40 Score=20.14 Aligned_cols=34 Identities=24% Similarity=0.157 Sum_probs=22.2
Q ss_pred eeeCCEEEEEec-CCCCeEeEEEEEEccCCEEEEe
Q 032704 70 VKAGDTVKVIAG-CDKGKIGEITKVFRHNSTVMVK 103 (135)
Q Consensus 70 I~kGD~V~VI~G-kdKGK~G~V~~V~r~~~~ViVe 103 (135)
.++||.|...-- ..+=-.++|+++...++.+.|.
T Consensus 2 wk~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~ 36 (54)
T 3s6w_A 2 WKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVK 36 (54)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEC--CCSEEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEE
Confidence 478999998863 3334679999998766665443
No 162
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=33.45 E-value=25 Score=20.94 Aligned_cols=17 Identities=18% Similarity=0.464 Sum_probs=13.5
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 20 ~eLs~~~Gd~i~v~~~~ 36 (62)
T 1k4u_S 20 EDLEFQEGDIILVLSKV 36 (62)
T ss_dssp SBCCBCSSCEEEEEEES
T ss_pred CCccCCCCCEEEEEEeC
Confidence 35668999999999753
No 163
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}
Probab=32.74 E-value=39 Score=20.84 Aligned_cols=16 Identities=6% Similarity=0.358 Sum_probs=13.0
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 22 ~eLs~~~Gd~i~v~~~ 37 (72)
T 2jw4_A 22 QELDIKKNERLWLLDD 37 (72)
T ss_dssp TSCCCCTTCEEEEEEC
T ss_pred CcccCCCCCEEEEEEC
Confidence 3556899999999974
No 164
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.52 E-value=20 Score=23.26 Aligned_cols=16 Identities=13% Similarity=0.368 Sum_probs=13.0
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 32 ~eLsf~~Gd~i~v~~~ 47 (90)
T 2yup_A 32 VELSFRKGEHICLIRK 47 (90)
T ss_dssp SBCCCCTTCEEEESSC
T ss_pred CcCCCCCCCEEEEEEE
Confidence 4566899999999874
No 165
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=32.36 E-value=27 Score=21.90 Aligned_cols=19 Identities=32% Similarity=0.791 Sum_probs=14.6
Q ss_pred ccceeeeCCEEEEEecCCC
Q 032704 66 HKMHVKAGDTVKVIAGCDK 84 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~GkdK 84 (135)
..+.+++||.|.|+.-.+.
T Consensus 21 ~ELs~~~Gd~i~v~~~~~~ 39 (65)
T 2lj0_A 21 DELELRDGDIVDVMEKCDD 39 (65)
T ss_dssp TBCCBCTTCEEEEEEECTT
T ss_pred CCcCCCCCCEEEEeEeCCC
Confidence 4567899999999875443
No 166
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A
Probab=32.28 E-value=32 Score=20.05 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=13.4
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 18 ~eLs~~~Gd~i~v~~~~ 34 (58)
T 2drm_A 18 DELTFKEGDTIIVHQKD 34 (58)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CCcCCCCCCEEEEEEec
Confidence 35668999999998754
No 167
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A
Probab=32.20 E-value=30 Score=20.14 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=13.3
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 16 ~eLs~~~Gd~i~v~~~~ 32 (57)
T 1cka_A 16 EDLPFKKGDILRIRDKP 32 (57)
T ss_dssp TBCCBCTTCEEEEEECS
T ss_pred CCCCCCCCCEEEEEEec
Confidence 34568999999999753
No 168
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A
Probab=31.47 E-value=45 Score=21.07 Aligned_cols=15 Identities=20% Similarity=0.397 Sum_probs=12.5
Q ss_pred ccceeeeCCEEEEEe
Q 032704 66 HKMHVKAGDTVKVIA 80 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~ 80 (135)
..+.+++||.|.|+.
T Consensus 20 ~eLs~~~Gd~I~V~~ 34 (83)
T 3i5r_A 20 EDIDLHLGDILTVNK 34 (83)
T ss_dssp TBCCBCTTCEEEEEH
T ss_pred CccccCCCCEEEEee
Confidence 456789999999994
No 169
>3a2z_A Bifunctional glutathionylspermidine synthetase/AM; GSP amidase, ATP-binding, hydrolase, ligase, multifunctional nucleotide-binding; 1.50A {Escherichia coli} PDB: 3a30_A 3a2y_A*
Probab=31.46 E-value=1e+02 Score=23.84 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=36.6
Q ss_pred eeeeeecCCCCCcccccceeeeCCEEEEEec---CCCCeEeEEEEEEccCCEEEEecccee
Q 032704 51 RWERKECKPNSLPVLHKMHVKAGDTVKVIAG---CDKGKIGEITKVFRHNSTVMVKDINLK 108 (135)
Q Consensus 51 ~wer~~~k~~~lp~~~k~~I~kGD~V~VI~G---kdKGK~G~V~~V~r~~~~ViVegvN~~ 108 (135)
-|++.+..+...| ++||.|.--.| .--|-++.|++|. .+.|.|-.-|..
T Consensus 100 ~l~~y~Ng~~~~P-------~~Gdl~V~~~g~~~~~yGHVAvV~~V~--~~~i~i~EQN~~ 151 (197)
T 3a2z_A 100 PLQAFPNGSPRAP-------VAGALLIWDKGGEFKDTGHVAIITQLH--GNKVRIAEQNVI 151 (197)
T ss_dssp ECEEEETTCSSCC-------CTTCEEEECSCGGGTTTCEEEEEEEEC--SSEEEEECSSSC
T ss_pred ceEEEccCCCCCC-------CCCeEEEECCCCcCCCCccEEEEEEEc--CCeEEEEecccC
Confidence 4777777777777 89996665443 3589999999997 568887777754
No 170
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.43 E-value=20 Score=22.64 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=12.9
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 32 ~eLs~~~Gd~i~v~~~ 47 (79)
T 1x6b_A 32 DEVTLQQADVVLVLQQ 47 (79)
T ss_dssp SBCCCCTTEEEEEEEE
T ss_pred CCcCCCCCCEEEEEEe
Confidence 4566899999999873
No 171
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.39 E-value=90 Score=20.47 Aligned_cols=41 Identities=20% Similarity=0.075 Sum_probs=27.8
Q ss_pred eeeeCCEEEEEecCCCCeEeEEEEEEccC-CEEEEeccceeE
Q 032704 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHN-STVMVKDINLKT 109 (135)
Q Consensus 69 ~I~kGD~V~VI~GkdKGK~G~V~~V~r~~-~~ViVegvN~~k 109 (135)
.+++||.|.-.--..+=-.++|++|..++ -.|...|-|...
T Consensus 9 ~~kvGd~clA~wsDg~~Y~A~I~~v~~~~~~~V~f~Dyn~e~ 50 (74)
T 2equ_A 9 DFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQFYDGVIRC 50 (74)
T ss_dssp CCCTTCEEEEECSSSSEEEEEEEEESTTSSEEEEETTSCEEE
T ss_pred CCCCCCEEEEECCCCCEEEEEEEEECCCCEEEEEEecCCeEE
Confidence 46889999988753334789999998742 345555556544
No 172
>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}
Probab=31.35 E-value=29 Score=21.02 Aligned_cols=19 Identities=16% Similarity=0.581 Sum_probs=14.7
Q ss_pred ccceeeeCCEEEEEecCCC
Q 032704 66 HKMHVKAGDTVKVIAGCDK 84 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~GkdK 84 (135)
..+.+++||.|.|+.-.+.
T Consensus 28 ~eLs~~~Gd~i~v~~~~~~ 46 (72)
T 4glm_A 28 NELDFEVGDKIRILATLED 46 (72)
T ss_dssp TBCCBCTTCEEEEEEECST
T ss_pred CcCCCCCCCEEEEEEccCC
Confidence 4567899999999975443
No 173
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1
Probab=31.35 E-value=35 Score=20.62 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=11.9
Q ss_pred ceeeeCCEEEEEec
Q 032704 68 MHVKAGDTVKVIAG 81 (135)
Q Consensus 68 ~~I~kGD~V~VI~G 81 (135)
+.+++||.+.|+..
T Consensus 25 Lsf~~Gd~i~v~~~ 38 (67)
T 3rnj_A 25 LSFKEGDLITLLVP 38 (67)
T ss_dssp CCBCTTCEEEECSS
T ss_pred ccCCCCCEEEEeec
Confidence 66899999999864
No 174
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1
Probab=31.27 E-value=32 Score=20.50 Aligned_cols=17 Identities=18% Similarity=0.485 Sum_probs=13.4
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 20 ~eLs~~~Gd~i~v~~~~ 36 (62)
T 1uj0_A 20 NELTFKHGELITVLDDS 36 (62)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CCcCCCCCCEEEEEEeC
Confidence 35668999999999843
No 175
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}
Probab=31.21 E-value=26 Score=24.38 Aligned_cols=16 Identities=19% Similarity=0.480 Sum_probs=13.1
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 74 ~eLsf~~Gd~i~vl~~ 89 (119)
T 2rqr_A 74 PQLSLQIGDVVRIQET 89 (119)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CcccCcCCCEEEEEEc
Confidence 4566899999999873
No 176
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Probab=31.13 E-value=33 Score=21.01 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=14.0
Q ss_pred ccceeeeCCEEEEEecCC
Q 032704 66 HKMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gkd 83 (135)
..+.+++||.|.|+.-.+
T Consensus 16 ~eLs~~~Gd~i~v~~~~~ 33 (65)
T 2nwm_A 16 KELTLQKGDIVYIHKEVD 33 (65)
T ss_dssp TBCCBCTTCEEEEEECCT
T ss_pred CccCCcCCCEEEEEEecC
Confidence 355689999999997643
No 177
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=30.56 E-value=57 Score=21.89 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=19.6
Q ss_pred eeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEe
Q 032704 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (135)
Q Consensus 69 ~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVe 103 (135)
.++.||+|.|. |++|++++.++.+.
T Consensus 75 ~~~vGd~V~v~----------V~~vd~~~~ki~LS 99 (109)
T 2khj_A 75 VLSVGDEVEAK----------FTGVDRKNRAISLS 99 (109)
T ss_dssp SCCTTCEEEEE----------EEEEETTTTEEEEE
T ss_pred ccCCCCEEEEE----------EEEEECCCCEEEEE
Confidence 48999999875 88888887776653
No 178
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}
Probab=30.33 E-value=19 Score=21.84 Aligned_cols=16 Identities=13% Similarity=0.343 Sum_probs=12.9
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 22 ~eLs~~~Gd~i~v~~~ 37 (67)
T 2kxc_A 22 TLLSFAQGDVITLLIP 37 (67)
T ss_dssp SBCCBCTTCEEEESSS
T ss_pred CCCcCCCCCEEEEeEC
Confidence 3566899999999973
No 179
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=30.28 E-value=18 Score=22.02 Aligned_cols=15 Identities=27% Similarity=0.709 Sum_probs=12.1
Q ss_pred ccceeeeCCEEEEEe
Q 032704 66 HKMHVKAGDTVKVIA 80 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~ 80 (135)
..+.+++||.|.|+.
T Consensus 22 ~eLs~~~Gd~i~v~~ 36 (68)
T 1wi7_A 22 DELELKVGDIIEVVG 36 (68)
T ss_dssp TBCCBCTTCEECCCE
T ss_pred CCccCcCCCEEEEEE
Confidence 356689999999986
No 180
>4fm4_B NitrIle hydratase beta subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=30.11 E-value=25 Score=27.50 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=20.7
Q ss_pred eeeeCCEEEEEecC----------CCCeEeEEEEEE
Q 032704 69 HVKAGDTVKVIAGC----------DKGKIGEITKVF 94 (135)
Q Consensus 69 ~I~kGD~V~VI~Gk----------dKGK~G~V~~V~ 94 (135)
.+++||+|.|..=. -+||+|+|..+.
T Consensus 118 ~F~vGd~Vrv~~~~~~gHtRlP~Y~rg~~G~I~~~~ 153 (206)
T 4fm4_B 118 GFKLGQRVHVKNEFVPGHTRFPAYIRGKAGVVVGIS 153 (206)
T ss_dssp CCCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEEC
T ss_pred CCcCCCEEEeCCCCCCCcccccHhhcCCeeEEEEEe
Confidence 48999999997632 478999998764
No 181
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Probab=29.98 E-value=32 Score=20.44 Aligned_cols=17 Identities=12% Similarity=0.227 Sum_probs=13.2
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 18 ~eLs~~~Gd~i~v~~~~ 34 (62)
T 2fpe_A 18 DELELEVDDPLLVELQA 34 (62)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred CcCcCCCCCEEEEEEec
Confidence 45668999999998643
No 182
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A
Probab=29.68 E-value=36 Score=20.15 Aligned_cols=17 Identities=0% Similarity=0.108 Sum_probs=13.6
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 18 ~eLs~~~Gd~i~v~~~~ 34 (61)
T 1y0m_A 18 DELTFTKSAIIQNVEKQ 34 (61)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CCcCCcCCCEEEEEEec
Confidence 35668999999999864
No 183
>3fo8_D Tail sheath protein GP18; mostly beta, viral structural protein, bacteriophage T4, viral protein; 1.80A {Enterobacteria phage T4}
Probab=29.57 E-value=45 Score=27.70 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=22.9
Q ss_pred eeeeCCEEEEEecCCC-CeEeEEEEEEccCC
Q 032704 69 HVKAGDTVKVIAGCDK-GKIGEITKVFRHNS 98 (135)
Q Consensus 69 ~I~kGD~V~VI~GkdK-GK~G~V~~V~r~~~ 98 (135)
+-.+||+|.|.-...- -..|+|++|+.+..
T Consensus 27 nY~VGD~i~Vky~~~vve~~GkVT~VD~dGk 57 (283)
T 3fo8_D 27 NYAVGDKITVKYVSDDIETEGKITEVDADGK 57 (283)
T ss_dssp SCCTTCEEEEEETTEEEEEEEEEEEECTTCC
T ss_pred CceeCCEEEEEEcCcEEecCceEEEEcCCCC
Confidence 3579999999887633 33499999998764
No 184
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Probab=29.53 E-value=36 Score=20.14 Aligned_cols=17 Identities=18% Similarity=0.477 Sum_probs=13.6
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 16 ~eLs~~~Gd~i~v~~~~ 32 (65)
T 2oaw_A 16 REVTMKKGDILTLLNST 32 (65)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CCCCCCCCCEEEEEEcC
Confidence 35668999999999853
No 185
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=29.50 E-value=69 Score=23.47 Aligned_cols=30 Identities=20% Similarity=0.158 Sum_probs=23.8
Q ss_pred ceeeeCCEEEEEecC--CCCeEeEEEEEEccC
Q 032704 68 MHVKAGDTVKVIAGC--DKGKIGEITKVFRHN 97 (135)
Q Consensus 68 ~~I~kGD~V~VI~Gk--dKGK~G~V~~V~r~~ 97 (135)
..++.||-|.|..+. .+=-+|.|.++....
T Consensus 25 ~~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~~ 56 (174)
T 1w4s_A 25 SMYHVGDYVYVEPAEANLQPHIVCIERLWEDS 56 (174)
T ss_dssp -CCCTTCEEEECCSSTTSCCEEEEEEEEEECT
T ss_pred EEEECCCEEEEeCCCCCCCCEEEEEEEEEEcC
Confidence 348999999998875 455699999999853
No 186
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=29.49 E-value=24 Score=23.94 Aligned_cols=29 Identities=31% Similarity=0.579 Sum_probs=18.3
Q ss_pred eeecCCCCCccc-------ccceeeeCCEEEEEecC
Q 032704 54 RKECKPNSLPVL-------HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 54 r~~~k~~~lp~~-------~k~~I~kGD~V~VI~Gk 82 (135)
|..+++..||.+ ...-+++||.|+|++-+
T Consensus 28 ~y~i~~~qLP~I~~~DPvar~~G~k~GdVvkI~R~S 63 (77)
T 1eik_A 28 ELDAHPEQLPKIKTTDPVAKAIGAKRGDIVKIIRKS 63 (77)
T ss_dssp HTTCCTTTSCCCBTTSHHHHGGGCCTTCEEEEEEEE
T ss_pred HcCCCHHHCCeeeCcCHhhHHhCCCCCCEEEEEECC
Confidence 345566666653 33567888888887754
No 187
>3iz5_a 60S ribosomal protein L27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_a
Probab=29.33 E-value=2 Score=32.30 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=33.2
Q ss_pred eeeCCEEEEEecCCCCeEeEEEEEEccC------CEEEEeccceeE
Q 032704 70 VKAGDTVKVIAGCDKGKIGEITKVFRHN------STVMVKDINLKT 109 (135)
Q Consensus 70 I~kGD~V~VI~GkdKGK~G~V~~V~r~~------~~ViVegvN~~k 109 (135)
+++|-.|.|++|.+.|+...|++...++ +.++|-||....
T Consensus 5 ~kpGkVvivl~GryaGkKaVivk~~d~gt~drpy~halVaGIdryP 50 (136)
T 3iz5_a 5 LKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYP 50 (136)
T ss_dssp CCCCCSCCCCCSSSSCCCCBCSCCSSSSSCSCSSCCSCCBCCSTTT
T ss_pred ccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEeeccCC
Confidence 6788899999999999999999887655 368888877543
No 188
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Probab=29.31 E-value=35 Score=20.68 Aligned_cols=17 Identities=12% Similarity=0.384 Sum_probs=13.7
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 17 ~eLs~~~Gd~i~v~~~~ 33 (67)
T 1gl5_A 17 HDLRLERGQEYIILEKN 33 (67)
T ss_dssp SBCCBCTTCEEEEEECS
T ss_pred CeecCCcCCEEEEEEcc
Confidence 35568999999999864
No 189
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G 3o58_F 3o5h_F 3u5e_E 3u5i_E 4b6a_E
Probab=29.30 E-value=24 Score=27.47 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=30.6
Q ss_pred ceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEec
Q 032704 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKD 104 (135)
Q Consensus 68 ~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVeg 104 (135)
-.|.+|..+.+++|+++||.-.+++... .|-+.|-|
T Consensus 32 ~Si~pGtvlIil~Gr~~GkrvVfLKql~-sglllVTG 67 (176)
T 3izc_G 32 ASLVPGTVLILLAGRFRGKRVVYLKHLE-DNTLLISG 67 (176)
T ss_dssp HHCCCCSCEECCSSSSSCCCBEEEEESS-SSSEEEEC
T ss_pred ccCCCCCEEEEeccccCCCEEEEEEecC-CCeEEEec
Confidence 3477899999999999999999999885 66777765
No 190
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A
Probab=29.18 E-value=37 Score=20.17 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=14.6
Q ss_pred ccceeeeCCEEEEEecCCC
Q 032704 66 HKMHVKAGDTVKVIAGCDK 84 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~GkdK 84 (135)
..+.+++||.|.|+.-.+.
T Consensus 24 ~eLs~~~Gd~i~v~~~~~~ 42 (65)
T 3ulr_B 24 DEISFDPDDIITNIEMIDD 42 (65)
T ss_dssp TBCCBCTTCEEEEEECCSS
T ss_pred CEeeEecCCEEEEEEecCC
Confidence 3567899999999976543
No 191
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=29.17 E-value=31 Score=26.74 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=26.0
Q ss_pred ccceeeeCCEEEEEecC------------CCCeEeEEEEEEccCCEE
Q 032704 66 HKMHVKAGDTVKVIAGC------------DKGKIGEITKVFRHNSTV 100 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk------------dKGK~G~V~~V~r~~~~V 100 (135)
..|-|++||.|.|+... +-|..|....|....+++
T Consensus 137 ~~~lV~rG~~V~i~~~~~g~~i~~~G~AL~~G~~Gd~IrVr~~Sgki 183 (219)
T 3tee_A 137 QAWRVKAGQRVQVIANGEGFSVNAEGQAMNNAAVAQNARVRMTSGQI 183 (219)
T ss_dssp ECCSBCTTCEEEEEEECSSCEEEEEEEECSCBCTTSEEEEEETTSCE
T ss_pred cccEEcCCCEEEEEEecCCEEEEEEEEEccccCCCCEEEEECCCCCE
Confidence 34679999999998754 567788888886655553
No 192
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=28.93 E-value=12 Score=31.10 Aligned_cols=24 Identities=42% Similarity=0.401 Sum_probs=0.0
Q ss_pred hhhhhhhcceeeeccccccCcccC
Q 032704 4 MAALQSSMTSLSISSNSFFGQRLS 27 (135)
Q Consensus 4 ~~~~~~~~~~l~~~~~~f~g~~l~ 27 (135)
||+-.++..+||++|+|.|...-.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (293)
T 3bbo_G 1 MATSTSSSLSLSFFSSSLFSSKSR 24 (293)
T ss_dssp ------------------------
T ss_pred CCccccCcceeeeeeccccccCcc
Confidence 445566778899888777765543
No 193
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}
Probab=28.74 E-value=34 Score=20.96 Aligned_cols=17 Identities=12% Similarity=0.227 Sum_probs=13.3
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 21 ~eLs~~~Gd~i~v~~~~ 37 (71)
T 2fpf_A 21 DELELEVDDPLLVELQA 37 (71)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred CcccCcCCcEEEEeEec
Confidence 45668999999998644
No 194
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=28.57 E-value=49 Score=28.62 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=25.4
Q ss_pred cceeeeCCEEEEEecCCCC---eEeEEEEEEccCCEEEE
Q 032704 67 KMHVKAGDTVKVIAGCDKG---KIGEITKVFRHNSTVMV 102 (135)
Q Consensus 67 k~~I~kGD~V~VI~GkdKG---K~G~V~~V~r~~~~ViV 102 (135)
.-+|++||.|.|-.....+ -.|.|.+|..+.=.|.+
T Consensus 78 ~~~~~~Gd~v~~~~~~~~~~~~~~g~v~~~~~~~i~v~~ 116 (646)
T 4b3f_X 78 SNSFTSGDIVGLYDAANEGSQLATGILTRVTQKSVTVAF 116 (646)
T ss_dssp CCCCCTTCEEEEEETTTTSCCCEEEEEEEEETTEEEEEC
T ss_pred cCCCCCCCEEEEEecCCCCCceEEEEEEEEeCCEEEEEE
Confidence 3468999999998765443 57999999866433333
No 195
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*
Probab=28.44 E-value=37 Score=20.72 Aligned_cols=18 Identities=6% Similarity=0.438 Sum_probs=14.1
Q ss_pred ccceeeeCCEEEEEecCC
Q 032704 66 HKMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gkd 83 (135)
..+.+++||.|.|+.-.+
T Consensus 30 ~eLs~~~Gd~i~v~~~~~ 47 (73)
T 3h0h_A 30 DDLSFHKGEKFQILNSSE 47 (73)
T ss_dssp TBCCBCTTCEEEEEECSS
T ss_pred CcceEeCCCEEEEEEecC
Confidence 456789999999997543
No 196
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A
Probab=28.31 E-value=35 Score=20.52 Aligned_cols=17 Identities=18% Similarity=0.174 Sum_probs=13.5
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 21 ~eLs~~~Gd~i~v~~~~ 37 (65)
T 2j05_A 21 DEISFLKGDMFIVHNEL 37 (65)
T ss_dssp SBCCBCTTCEEEEEEEC
T ss_pred CcCcCCCCCEEEEeEec
Confidence 45668999999998753
No 197
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.14 E-value=36 Score=21.04 Aligned_cols=17 Identities=18% Similarity=0.544 Sum_probs=13.5
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 22 ~eLs~~~Gd~i~v~~~~ 38 (73)
T 2dm1_A 22 RELSLREGDVVRIYSRI 38 (73)
T ss_dssp TBCCBCTTCEEECCBSS
T ss_pred CcCCCCCCCEEEEEEec
Confidence 35568999999999753
No 198
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=27.96 E-value=66 Score=21.88 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=20.2
Q ss_pred eeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEe
Q 032704 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (135)
Q Consensus 69 ~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVe 103 (135)
.++.||+|.|. |++|+.+++++.+.
T Consensus 75 ~~~vGd~V~vk----------V~~vd~~~~rI~ls 99 (115)
T 2khi_A 75 VVNVGDVVEVM----------VLDIDEERRRISLG 99 (115)
T ss_dssp TCCTTCEEEEE----------EEEEETTTTEEEEC
T ss_pred EECCCCEEEEE----------EEEEECCCCEEEEE
Confidence 48999999884 88899888877654
No 199
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A
Probab=27.93 E-value=38 Score=19.58 Aligned_cols=18 Identities=22% Similarity=0.578 Sum_probs=14.0
Q ss_pred ccceeeeCCEEEEEecCC
Q 032704 66 HKMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gkd 83 (135)
..+.+++||.|.|+.-.+
T Consensus 16 ~eLs~~~Gd~i~v~~~~~ 33 (58)
T 4e6r_A 16 DELSLVXGSRVTVMEXCS 33 (58)
T ss_dssp TBCCBCTTCEEEEEEECT
T ss_pred CEeeEeCCCEEEEeEcCC
Confidence 456689999999987543
No 200
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=27.77 E-value=54 Score=20.59 Aligned_cols=16 Identities=13% Similarity=0.289 Sum_probs=13.2
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 32 ~eLs~~~Gd~i~v~~~ 47 (81)
T 1x43_A 32 TELSLLADEVITVFSV 47 (81)
T ss_dssp TBCCCCTTCEEEEECC
T ss_pred CcCCCCCCCEEEEEEc
Confidence 4566899999999975
No 201
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=27.61 E-value=62 Score=27.05 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=23.2
Q ss_pred ccceeeeCCEEEEEecCCCCeEeEEEEEEcc
Q 032704 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRH 96 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~GkdKGK~G~V~~V~r~ 96 (135)
..=.|++||.|.++-+ |+.++|.+|...
T Consensus 294 ~~G~l~~gd~v~~~p~---~~~~~V~~i~~~ 321 (467)
T 1r5b_A 294 EAGSIKKNSNVLVMPI---NQTLEVTAIYDE 321 (467)
T ss_dssp CBSEEETTEEEEEETT---TEEEEEEEEECT
T ss_pred eeeEEeeCCEEEEccC---CeeEEEEEEecc
Confidence 4557999999999866 588999999886
No 202
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural protein; 1.75A {Gallus gallus}
Probab=27.58 E-value=39 Score=21.31 Aligned_cols=18 Identities=17% Similarity=0.492 Sum_probs=14.3
Q ss_pred ccceeeeCCEEEEEecCC
Q 032704 66 HKMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gkd 83 (135)
..+.+++||.|.|+.-.+
T Consensus 17 ~eLs~~~Gd~i~v~~~~~ 34 (80)
T 2pqh_A 17 REVTMKKGDILTLLNSTN 34 (80)
T ss_dssp TBCCBCTTCEEEEEECCS
T ss_pred CccCCCCCCEEEEEEecC
Confidence 356689999999998644
No 203
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=27.47 E-value=1.1e+02 Score=20.54 Aligned_cols=34 Identities=21% Similarity=0.084 Sum_probs=25.0
Q ss_pred eeeeCCEEEEEec-CCCCeEeEEEEEEccCCEEEE
Q 032704 69 HVKAGDTVKVIAG-CDKGKIGEITKVFRHNSTVMV 102 (135)
Q Consensus 69 ~I~kGD~V~VI~G-kdKGK~G~V~~V~r~~~~ViV 102 (135)
.+++||.|...-- ..+=-.++|++|....+.+.|
T Consensus 10 ~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V 44 (88)
T 1g5v_A 10 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVV 44 (88)
T ss_dssp CCCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEE
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEE
Confidence 4588999999874 444578999999886555544
No 204
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.47 E-value=39 Score=20.46 Aligned_cols=17 Identities=6% Similarity=0.303 Sum_probs=13.6
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 22 ~eLs~~~Gd~i~v~~~~ 38 (68)
T 1x2p_A 22 TQLSFLRGEKILILRQT 38 (68)
T ss_dssp TBCCCCTTCEEEEEECC
T ss_pred CCcCCCCCCEEEEEEcC
Confidence 35568999999999864
No 205
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}
Probab=27.41 E-value=36 Score=20.57 Aligned_cols=18 Identities=17% Similarity=0.440 Sum_probs=13.9
Q ss_pred ccceeeeCCEEEEEecCC
Q 032704 66 HKMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gkd 83 (135)
..+.+++||.|.|+.-.+
T Consensus 21 ~eLs~~~Gd~i~v~~~~~ 38 (69)
T 4esr_A 21 DELTIHRGDIIRVFFKDN 38 (69)
T ss_dssp TBCCBCTTCEEEEEEECS
T ss_pred CcCCCCCCCEEEEEEecC
Confidence 456689999999997543
No 206
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=27.33 E-value=1.1e+02 Score=18.97 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=27.4
Q ss_pred ccccCcccCCCCCCCccccCCCCceeeeeeeeeeeeeecCCCCCcccccceeeeCCEEEEEecC
Q 032704 19 NSFFGQRLSFPSLSPITVKPTDKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 19 ~~f~g~~l~~~~~~~~~~~~~~~~~~~~~~~k~wer~~~k~~~lp~~~k~~I~kGD~V~VI~Gk 82 (135)
+.+.|++|.-.... ..| .+.+.+|-.+.- -|. ....+..||.+.|+.-+
T Consensus 25 s~~~Gk~l~el~~~--------~~~-~i~~I~R~~~~~-~p~-----~~~~l~~GD~l~v~g~~ 73 (86)
T 3jxo_A 25 SPVVGKKLKDLPLP--------RDS-IIAAIVRGGVLV-VPR-----GDTEILSGDKLYVIVSA 73 (86)
T ss_dssp CTTTTCBGGGSCCC--------SSE-EEEEEEETTEEE-CCC-----TTCBCCTTCEEEEEEET
T ss_pred CccccCCHHHCCCC--------CCC-EEEEEEECCEEE-CCC-----CCCEECCCCEEEEEECH
Confidence 56778877642211 123 345555433222 232 45679999999887543
No 207
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A
Probab=27.12 E-value=40 Score=21.44 Aligned_cols=17 Identities=6% Similarity=0.411 Sum_probs=13.6
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 20 ~eLs~~~Gd~i~vl~~~ 36 (79)
T 3cqt_A 20 DDLSFHKGEKFQILNSS 36 (79)
T ss_dssp TBCCBCTTCEEEEEECT
T ss_pred CcCCCCCCCEEEEEEec
Confidence 35668999999999754
No 208
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}
Probab=27.10 E-value=43 Score=19.58 Aligned_cols=17 Identities=12% Similarity=0.276 Sum_probs=13.6
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 18 ~eLs~~~Gd~i~v~~~~ 34 (58)
T 1zlm_A 18 DELYFEEGDIIYITDMS 34 (58)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CCccCCCCCEEEEEEeC
Confidence 45668999999999753
No 209
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Probab=26.94 E-value=43 Score=19.58 Aligned_cols=18 Identities=22% Similarity=0.547 Sum_probs=14.2
Q ss_pred ccceeeeCCEEEEEecCC
Q 032704 66 HKMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gkd 83 (135)
..+.+++||.|.|+.-.+
T Consensus 21 ~eLs~~~Gd~i~v~~~~~ 38 (62)
T 3ngp_A 21 RELTVKKGDILTLLNSTN 38 (62)
T ss_dssp TBCCBCTTCEEEEEECCS
T ss_pred CCccCCCCCEEEEeEecC
Confidence 456689999999998644
No 210
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=26.88 E-value=35 Score=21.34 Aligned_cols=18 Identities=6% Similarity=0.298 Sum_probs=14.2
Q ss_pred ccceeeeCCEEEEEecCC
Q 032704 66 HKMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gkd 83 (135)
..+.+++||.|.|+.-.+
T Consensus 22 ~eLs~~~Gd~i~v~~~~~ 39 (80)
T 1ue9_A 22 EQLSLAPGQLILILKKNT 39 (80)
T ss_dssp TBCCCCTTCEEEEEEECS
T ss_pred CCCCCCCCCEEEEEEecC
Confidence 456689999999998643
No 211
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}
Probab=26.66 E-value=62 Score=20.65 Aligned_cols=16 Identities=19% Similarity=0.445 Sum_probs=13.2
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 18 ~eLs~~~Gd~i~v~~~ 33 (90)
T 3reb_B 18 DDLSFQKGDQMVVLEE 33 (90)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CcCCCCCCCEEEEEEe
Confidence 4566899999999975
No 212
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Probab=26.61 E-value=39 Score=19.84 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=13.8
Q ss_pred ccceeeeCCEEEEEecCC
Q 032704 66 HKMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gkd 83 (135)
..+.+++||.|.|+.-.+
T Consensus 21 ~eLs~~~Gd~i~v~~~~~ 38 (64)
T 4f14_A 21 DEVSFRDGDYIVNVQPID 38 (64)
T ss_dssp TBCCBCTTCEEEEEEECS
T ss_pred CcCCCCCCCEEEEEEeCC
Confidence 356689999999987543
No 213
>2f41_A Transcription factor FAPR; 'HOT-DOG' fold, gene regulation; 2.50A {Bacillus subtilis} SCOP: d.38.1.5
Probab=26.48 E-value=1e+02 Score=20.45 Aligned_cols=35 Identities=14% Similarity=0.049 Sum_probs=19.1
Q ss_pred eeeCCEEEE----EecCCCCeEeEEEEEEccCCEEEEec
Q 032704 70 VKAGDTVKV----IAGCDKGKIGEITKVFRHNSTVMVKD 104 (135)
Q Consensus 70 I~kGD~V~V----I~GkdKGK~G~V~~V~r~~~~ViVeg 104 (135)
+++||++.+ +.=+.++..+.+......++.++.++
T Consensus 73 v~~Gd~l~~~a~v~~~~~~~~~~~v~~~~~~~g~~v~~g 111 (121)
T 2f41_A 73 VKQGERVVAKAKVTAVEKEKGRTVVEVNSYVGEEIVFSG 111 (121)
T ss_dssp CBTTCEEEEEEEEEEECSSSSCEEEEEEEEETTEEEEEE
T ss_pred cCCCCEEEEEEEEEEEEccCCEEEEEEEEEECCEEEEEE
Confidence 688997754 42233445555544444455665554
No 214
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}
Probab=26.45 E-value=40 Score=20.36 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=13.7
Q ss_pred ccceeeeCCEEEEEecCC
Q 032704 66 HKMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gkd 83 (135)
..+.+++||.|.|+.-.+
T Consensus 22 ~eLs~~~Gd~i~v~~~~~ 39 (68)
T 2djq_A 22 GDLKFNKGDVILLRRQLD 39 (68)
T ss_dssp TCCCCCTTCEEEEEECCC
T ss_pred CCccCCCCCEEEEEEecC
Confidence 345689999999987543
No 215
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=26.42 E-value=1.2e+02 Score=21.06 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=32.9
Q ss_pred eeCCEEEEEecCCCCeEeEEEEEEccCCEEEEeccce
Q 032704 71 KAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINL 107 (135)
Q Consensus 71 ~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVegvN~ 107 (135)
.-|-++-+|+=.|.--+|.+-.|+.++++|.+++|-.
T Consensus 11 yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrs 47 (88)
T 2vxe_A 11 ELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRS 47 (88)
T ss_dssp CTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEE
T ss_pred ccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeE
Confidence 4688999999999999999999999999999987543
No 216
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A
Probab=25.93 E-value=41 Score=20.02 Aligned_cols=16 Identities=6% Similarity=0.499 Sum_probs=13.1
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 16 ~eLs~~~Gd~i~v~~~ 31 (62)
T 2j6f_A 16 DELTIRVGEIIRNVKK 31 (62)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CCcCCcCCCEEEEEEe
Confidence 3556899999999985
No 217
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}
Probab=25.09 E-value=44 Score=20.58 Aligned_cols=18 Identities=17% Similarity=0.492 Sum_probs=14.0
Q ss_pred ccceeeeCCEEEEEecCC
Q 032704 66 HKMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gkd 83 (135)
..+.+++||.|.|+.-.+
T Consensus 14 ~eLs~~~Gd~i~v~~~~~ 31 (73)
T 2kxd_A 14 REVTMKKGDILTLLNSTN 31 (73)
T ss_dssp CCCCBCTTCEEEEEECCS
T ss_pred CEeeEcCCCEEEEEEecC
Confidence 345689999999998644
No 218
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.90 E-value=47 Score=20.18 Aligned_cols=16 Identities=13% Similarity=0.569 Sum_probs=13.1
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 22 ~eLs~~~Gd~i~v~~~ 37 (68)
T 2dl4_A 22 EDLEMRPGDIITLLED 37 (68)
T ss_dssp TBCCCCTTCEEEEEEC
T ss_pred CCcCCCCCCEEEEEEe
Confidence 4566899999999984
No 219
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1
Probab=24.56 E-value=47 Score=19.97 Aligned_cols=18 Identities=22% Similarity=0.540 Sum_probs=13.9
Q ss_pred cceeeeCCEEEEEecCCC
Q 032704 67 KMHVKAGDTVKVIAGCDK 84 (135)
Q Consensus 67 k~~I~kGD~V~VI~GkdK 84 (135)
.+.+++||.|.|+.-.+.
T Consensus 5 eLs~~~Gd~i~v~~~~~~ 22 (63)
T 1tuc_A 5 EVTMKKGDILTLLNSTNK 22 (63)
T ss_dssp CCCBCTTCEEEEEECCSS
T ss_pred ccCCCCCCEEEEEEecCC
Confidence 345899999999986543
No 220
>3b9t_A Twin-arginine translocation pathway signal protei; YP_546212.1, predicted acetamidase/formamidase, acetamidase/formamidase family; 1.58A {Methylobacillus flagellatus KT}
Probab=24.51 E-value=33 Score=30.25 Aligned_cols=64 Identities=20% Similarity=0.134 Sum_probs=21.7
Q ss_pred hhcceeeeccccccCcccCCCCCCCccccCCCCceeeeeeeeeeeeeecCCCCCcccccceeeeCCEEEEEe
Q 032704 9 SSMTSLSISSNSFFGQRLSFPSLSPITVKPTDKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIA 80 (135)
Q Consensus 9 ~~~~~l~~~~~~f~g~~l~~~~~~~~~~~~~~~~~~~~~~~k~wer~~~k~~~lp~~~k~~I~kGD~V~VI~ 80 (135)
+++++||+.+.+|.++-+..... ......-.++-....-.|-.. ++.+| +-..|+.||+|.+=+
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~lpa~~~tv~wg~f---s~~~~--PvltV~sGd~V~ieT 108 (484)
T 3b9t_A 45 ASAASLGISSSAFGQTMPKTGLT---SGHATHYYIPASDKTVSWGFF---SKSLK--PVVELESGDFATIET 108 (484)
T ss_dssp --------------------CCS---CEECCEEEECCSTTTEEESEE---CTTSC--CSEEECTTCEEEEEE
T ss_pred cccccccccchhhcccchhcccC---CCCCCceEccCCCCceEeCCc---CCCCC--ceEEECCCCEEEEEE
Confidence 66788888777655443321110 111111123323334456443 23344 567899999999874
No 221
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=24.46 E-value=52 Score=27.01 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=24.2
Q ss_pred ccceeeeCCEEEEEecCCCCeEeEEEEEEccCCE
Q 032704 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNST 99 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ 99 (135)
..=.|++||+|.+..+ |+.++|.+|...+..
T Consensus 266 ~~G~l~~gd~v~~~p~---~~~~~V~~i~~~~~~ 296 (434)
T 1zun_B 266 ASGIVHKGDEIVVLPS---GKSSRVKSIVTFEGE 296 (434)
T ss_dssp CBSCEETTCEEEETTT---CCEEEEEEEEETTEE
T ss_pred ecceEeCCCEEEEecC---CeEEEEEEEEEcCcc
Confidence 4557899999999764 478899999877654
No 222
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=24.12 E-value=76 Score=20.69 Aligned_cols=36 Identities=22% Similarity=0.123 Sum_probs=25.7
Q ss_pred ceeeeCCEEEEEec-CCCCeEeEEEEEEccCCEEEEe
Q 032704 68 MHVKAGDTVKVIAG-CDKGKIGEITKVFRHNSTVMVK 103 (135)
Q Consensus 68 ~~I~kGD~V~VI~G-kdKGK~G~V~~V~r~~~~ViVe 103 (135)
..+++||.|...-- ..+=-.++|++|...++.+.|.
T Consensus 16 ~~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~ 52 (77)
T 3pnw_C 16 KMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVK 52 (77)
T ss_dssp TTCCTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEE
T ss_pred CCCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEE
Confidence 45789999999863 3334569999998776665443
No 223
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=24.05 E-value=84 Score=22.00 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=20.1
Q ss_pred ceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEe
Q 032704 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (135)
Q Consensus 68 ~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVe 103 (135)
-.++.||+|.|. |+.|+.+++++.+.
T Consensus 50 ~~~~vGd~V~vk----------V~~vd~~~~kI~LS 75 (130)
T 2k4k_A 50 EHLSVGDEVQVK----------VLAVDEEKGKISLS 75 (130)
T ss_dssp GTCCTTCEEEEE----------EEEEETTTTEEEEE
T ss_pred ccCCCCCEEEEE----------EEEEeCCCCEEEEE
Confidence 358999999875 78888877777654
No 224
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=23.96 E-value=37 Score=21.77 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=10.8
Q ss_pred cceeeeCCEEEEEec
Q 032704 67 KMHVKAGDTVKVIAG 81 (135)
Q Consensus 67 k~~I~kGD~V~VI~G 81 (135)
+..+.+||.|.|-.-
T Consensus 44 ~i~i~~GD~V~ve~~ 58 (71)
T 1hr0_W 44 YIRILPGDRVVVEIT 58 (71)
T ss_dssp CCCCCTTCEEEEECC
T ss_pred CcCCCCCCEEEEEEE
Confidence 344679999998643
No 225
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=23.95 E-value=1.2e+02 Score=22.75 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=18.4
Q ss_pred eeeeCCEEEEEecC---CC----CeEeEEEEEEcc
Q 032704 69 HVKAGDTVKVIAGC---DK----GKIGEITKVFRH 96 (135)
Q Consensus 69 ~I~kGD~V~VI~Gk---dK----GK~G~V~~V~r~ 96 (135)
.|++||+|.|-.=- +| --+|.|+++...
T Consensus 21 ~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~ 55 (146)
T 3v2d_T 21 EFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRN 55 (146)
T ss_dssp CCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECC
T ss_pred CcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECC
Confidence 38999999986531 22 245777777654
No 226
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=23.86 E-value=56 Score=21.92 Aligned_cols=25 Identities=20% Similarity=0.089 Sum_probs=18.4
Q ss_pred cceeeeCCEEEEEecCCCCeEeEEE
Q 032704 67 KMHVKAGDTVKVIAGCDKGKIGEIT 91 (135)
Q Consensus 67 k~~I~kGD~V~VI~GkdKGK~G~V~ 91 (135)
+..|.+||+|.|---++--..|.|+
T Consensus 51 ~I~Il~GD~V~ve~~~yd~~kgrIi 75 (79)
T 3i4o_A 51 YIRILPEDRVVVELSPYDLSRGRIV 75 (79)
T ss_dssp TCCCCTTCEEEEEEETTEEEEEEEE
T ss_pred CccCCCCCEEEEEECccCCCcEEEE
Confidence 4458999999996666656667774
No 227
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=23.74 E-value=1.1e+02 Score=21.47 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=33.4
Q ss_pred eeCCEEEEEecCCCCeEeEEEEEEccCCEEEEeccce
Q 032704 71 KAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINL 107 (135)
Q Consensus 71 ~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViVegvN~ 107 (135)
.-|-++-+|+=.|.--+|.+-.|+.++++|.+++|-.
T Consensus 17 ~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRs 53 (95)
T 2fb7_A 17 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRS 53 (95)
T ss_dssp CSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCC
T ss_pred ccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeE
Confidence 5688999999999999999999999999999987644
No 228
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}
Probab=23.71 E-value=57 Score=20.88 Aligned_cols=16 Identities=6% Similarity=0.358 Sum_probs=13.1
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 46 ~eLs~~~Gd~i~v~~~ 61 (86)
T 2jxb_A 46 QELDIKKNERLWLLDD 61 (86)
T ss_dssp SBCCCCTTEEEEEEEC
T ss_pred CEeccCCCCEEEEEec
Confidence 4566899999999974
No 229
>3a8g_B NitrIle hydratase subunit beta; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 2ahj_B 2cyz_B* 2cz0_B 2cz6_B 2cz7_B 2d0q_B 2cz1_B 2zcf_B 2zpb_B 2zpe_B 2zpf_B 2zpg_B 2zph_B 2zpi_B 2qdy_B 3a8h_B 3a8l_B 3a8o_B 3a8m_B 1ahj_B
Probab=23.66 E-value=39 Score=26.62 Aligned_cols=29 Identities=21% Similarity=0.419 Sum_probs=21.5
Q ss_pred ccceeeeCCEEEEEecC----------CCCeEeEE-EEEE
Q 032704 66 HKMHVKAGDTVKVIAGC----------DKGKIGEI-TKVF 94 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk----------dKGK~G~V-~~V~ 94 (135)
..-.+.+||+|.|..-. -+||+|+| ..+.
T Consensus 119 ~~~~F~vGd~Vrv~~~~~~gHtR~P~YvRGk~G~I~~~~~ 158 (212)
T 3a8g_B 119 ETTTFEVGQRVRVRDEYVPGHIRMPAYCRGRVGTISHRTT 158 (212)
T ss_dssp CCCCCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEECS
T ss_pred cCcccCCCCeEEEecCCCCCcccccHHHCCCeEEEEEEec
Confidence 34568999999997643 47999999 4443
No 230
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}
Probab=23.41 E-value=55 Score=19.77 Aligned_cols=17 Identities=18% Similarity=0.413 Sum_probs=13.8
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 18 ~eLs~~~Gd~i~v~~~~ 34 (69)
T 1wyx_A 18 DELSFRKGDIMTVLEQD 34 (69)
T ss_dssp TBCCBCTTCEEEEEETT
T ss_pred CccCCcCCCEEEEeECC
Confidence 35668999999999864
No 231
>3k67_A Putative dehydratase AF1124; hypothetical protein AF1124, structural genomics, PSI, protein structure initiative; 1.25A {Archaeoglobus fulgidus} PDB: 2b3m_A
Probab=23.34 E-value=73 Score=23.09 Aligned_cols=19 Identities=37% Similarity=0.574 Sum_probs=13.1
Q ss_pred eeeeCCEEEEEecCCCCeEeEEEEEEc
Q 032704 69 HVKAGDTVKVIAGCDKGKIGEITKVFR 95 (135)
Q Consensus 69 ~I~kGD~V~VI~GkdKGK~G~V~~V~r 95 (135)
+++.||++.+ .++|+++.+
T Consensus 115 PV~~GDtl~~--------~~~V~~~~~ 133 (159)
T 3k67_A 115 PVRIGDVVRV--------EGVVSGVEK 133 (159)
T ss_dssp CCCTTCEEEE--------EEEEEEEET
T ss_pred CcCCCCEEEE--------EEEEEEEEC
Confidence 3789999986 345666654
No 232
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A
Probab=23.15 E-value=49 Score=19.90 Aligned_cols=16 Identities=13% Similarity=0.439 Sum_probs=13.0
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 21 ~eLs~~~Gd~i~v~~~ 36 (67)
T 2o9s_A 21 VEMSFRKGERITLLRQ 36 (67)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CccCCCCCCEEEEEEe
Confidence 4566899999999974
No 233
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=23.05 E-value=39 Score=25.40 Aligned_cols=30 Identities=7% Similarity=0.150 Sum_probs=23.4
Q ss_pred ccceeeeCCEEEEEecCCCCeEeEEEEEEccCC
Q 032704 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNS 98 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~ 98 (135)
..-.|++||+|.++-. |+..+|.+|..++.
T Consensus 27 ~~G~i~~Gd~v~i~P~---~~~~~V~~I~~~~~ 56 (204)
T 3e1y_E 27 ESGSICKGQQLVMMPN---KHNVEVLGILSDDV 56 (204)
T ss_dssp CBSCEESSCCEEETTT---TEEEEEEEECSSSS
T ss_pred ecCEEECCCEEEECCC---CCEEEEEEEEECCE
Confidence 3456899999998843 58899999987654
No 234
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A
Probab=22.98 E-value=71 Score=21.97 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=19.5
Q ss_pred eeeeCCEEEEE-ecCCCCeEeEEEEEEc
Q 032704 69 HVKAGDTVKVI-AGCDKGKIGEITKVFR 95 (135)
Q Consensus 69 ~I~kGD~V~VI-~GkdKGK~G~V~~V~r 95 (135)
.+..||+|.|. .|. .+..|+|.-|=.
T Consensus 11 ~~~vG~rv~V~~~g~-~~~~GtVryvG~ 37 (95)
T 1lpl_A 11 NIMVGNRCEVTVGAQ-MARRGEVAYVGA 37 (95)
T ss_dssp TCCTTCEEEECCTTS-CCEEEEEEEEEC
T ss_pred cCCCCCEEEEccCCC-CceEEEEEEecc
Confidence 47899999997 343 478888877754
No 235
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.92 E-value=1.5e+02 Score=18.82 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=14.4
Q ss_pred ccceeeeCCEEEEEecCCC
Q 032704 66 HKMHVKAGDTVKVIAGCDK 84 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~GkdK 84 (135)
..+.+++||.|.|+.-.+.
T Consensus 33 ~eLsf~~Gd~i~v~~~~~~ 51 (88)
T 2dbk_A 33 TALALEVGDIVKVTRMNIN 51 (88)
T ss_dssp SBCCBCTTCEEEEEEECTT
T ss_pred CcccCCCCCEEEEEEecCC
Confidence 3466899999999986443
No 236
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1
Probab=22.89 E-value=55 Score=19.88 Aligned_cols=19 Identities=21% Similarity=0.522 Sum_probs=14.6
Q ss_pred ccceeeeCCEEEEEecCCC
Q 032704 66 HKMHVKAGDTVKVIAGCDK 84 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~GkdK 84 (135)
..+.+++||.|.|+.-.+.
T Consensus 20 ~eLs~~~Gd~i~v~~~~~~ 38 (73)
T 3thk_A 20 REVTMKKGDILTLLNSTNK 38 (73)
T ss_dssp TBCCBCTTCEEEEEECCSS
T ss_pred CccCCCCCCEEEEEECCCC
Confidence 4566899999999986443
No 237
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}
Probab=22.68 E-value=37 Score=22.00 Aligned_cols=18 Identities=28% Similarity=0.547 Sum_probs=14.1
Q ss_pred ccceeeeCCEEEEEecCC
Q 032704 66 HKMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gkd 83 (135)
..+.+++||.|.|+.-.+
T Consensus 34 ~eLsf~~GDiI~V~~~~~ 51 (83)
T 2ke9_A 34 TALNVRAGDVITVLEQHP 51 (83)
T ss_dssp TBCCBCTTCEEEESCSSC
T ss_pred CcccccCCCEEEEEEecC
Confidence 356689999999997654
No 238
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.68 E-value=39 Score=20.40 Aligned_cols=17 Identities=29% Similarity=0.794 Sum_probs=13.4
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 22 ~eLs~~~Gd~i~v~~~~ 38 (70)
T 2ct3_A 22 DELELREGDRVDVMQQC 38 (70)
T ss_dssp TBCCBCTTEEEEEEEEC
T ss_pred CCccCCCCCEEEEEEEC
Confidence 35668999999998753
No 239
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=22.55 E-value=67 Score=21.90 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=16.6
Q ss_pred eeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEE
Q 032704 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMV 102 (135)
Q Consensus 69 ~I~kGD~V~VI~GkdKGK~G~V~~V~r~~~~ViV 102 (135)
.++.||+|.|. |++|+.+++++.+
T Consensus 67 ~~~~Gd~V~vk----------V~~vd~~~~~i~L 90 (119)
T 1wi5_A 67 KLKVGQYLNCI----------VEKVKGNGGVVSL 90 (119)
T ss_dssp CCCTTCEEEEE----------EEECCTTSCEEEE
T ss_pred EeCCCCEEEEE----------EEEEeCCCCEEEE
Confidence 47899999874 5666666555544
No 240
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=22.38 E-value=1.7e+02 Score=21.02 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=18.0
Q ss_pred eeeeCCEEEEEe----cCC---CCeEeEEEEEEcc
Q 032704 69 HVKAGDTVKVIA----GCD---KGKIGEITKVFRH 96 (135)
Q Consensus 69 ~I~kGD~V~VI~----Gkd---KGK~G~V~~V~r~ 96 (135)
.+++||+|.|-. |.- .--+|.|+++...
T Consensus 18 ~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~ 52 (114)
T 3r8s_P 18 SFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNR 52 (114)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECC
T ss_pred ccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECC
Confidence 389999999864 321 1245777776654
No 241
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=22.18 E-value=1e+02 Score=25.58 Aligned_cols=39 Identities=18% Similarity=0.143 Sum_probs=30.2
Q ss_pred cceeeeCCEEEEE----ecCCCCeEeEEEEEEccCCEEEEecc
Q 032704 67 KMHVKAGDTVKVI----AGCDKGKIGEITKVFRHNSTVMVKDI 105 (135)
Q Consensus 67 k~~I~kGD~V~VI----~GkdKGK~G~V~~V~r~~~~ViVegv 105 (135)
...+++||.|-.. .+..-=-.++|++++.++++-.|+|+
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~~~~~~y~v~d~ 427 (522)
T 3mp6_A 385 NAPILVGSEVAYKPRRGSADGEWIQCEVLKVVADGTRFEVRDP 427 (522)
T ss_dssp CCCBCTTCEEEECCC-----CCEEEEEEEEEETTTTEEEEEEC
T ss_pred ccccCCCCEEEEecCCCCCCCCEEEEEEEEEeCCCCEEEEeCC
Confidence 4458999999885 33455668999999999999999877
No 242
>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A
Probab=22.09 E-value=34 Score=20.18 Aligned_cols=16 Identities=19% Similarity=0.495 Sum_probs=13.0
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 22 ~eLs~~~Gd~i~v~~~ 37 (65)
T 3u23_A 22 DELELKVGDIIDINEE 37 (65)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CCcCCCCCCEEEEEEe
Confidence 4567899999999864
No 243
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}
Probab=21.95 E-value=47 Score=23.75 Aligned_cols=16 Identities=25% Similarity=0.628 Sum_probs=12.9
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 20 ~ELsf~~Gd~i~Vl~~ 35 (142)
T 2kbt_A 20 SELSLKEGDIIKILNK 35 (142)
T ss_dssp SBCCCCTTCEEEEEEC
T ss_pred CcCCCCCCCEEEEEEe
Confidence 3556899999999974
No 244
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.77 E-value=54 Score=20.49 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=14.0
Q ss_pred ccceeeeCCEEEEEecCC
Q 032704 66 HKMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gkd 83 (135)
..+.+++||.|.|+.-.+
T Consensus 32 ~eLsf~~Gd~i~v~~~~~ 49 (78)
T 2ed0_A 32 DELSFQEGAIIYVIKKND 49 (78)
T ss_dssp TBCCBCSSCEEEEEEECS
T ss_pred CcccccCCCEEEEEEeCC
Confidence 456689999999997543
No 245
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.75 E-value=45 Score=20.54 Aligned_cols=17 Identities=24% Similarity=0.556 Sum_probs=13.6
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 22 ~eLs~~~Gd~i~v~~~~ 38 (77)
T 2d8j_A 22 EDLSFRAGDKLQVLDTS 38 (77)
T ss_dssp SBCCBCTTCCEEEEECC
T ss_pred CccCCCCCCEEEEEECC
Confidence 35668999999999854
No 246
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.74 E-value=50 Score=21.38 Aligned_cols=16 Identities=13% Similarity=0.225 Sum_probs=13.2
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 31 ~eLs~~~Gd~i~v~~~ 46 (94)
T 2e5k_A 31 DELELVPGDFIFMSPM 46 (94)
T ss_dssp SBCCBCTTCEEEECGG
T ss_pred CCcCCCCCCEEEEEEC
Confidence 4566899999999975
No 247
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Probab=21.59 E-value=55 Score=19.79 Aligned_cols=16 Identities=6% Similarity=0.175 Sum_probs=12.9
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 22 ~eLsf~~Gd~i~v~~~ 37 (68)
T 1tg0_A 22 DDLNFEKDQEIIVTSV 37 (68)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CCCCCCCCCEEEEEEe
Confidence 3566899999999974
No 248
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}
Probab=21.52 E-value=58 Score=19.68 Aligned_cols=17 Identities=29% Similarity=0.515 Sum_probs=13.4
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 23 ~eLs~~~Gd~i~v~~~~ 39 (69)
T 2dil_A 23 DELDLSAGDILEVILEG 39 (69)
T ss_dssp SSCCBCTTCEEEEEECC
T ss_pred CccCCCCCCEEEEEECC
Confidence 35568999999999753
No 249
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}
Probab=21.36 E-value=20 Score=23.83 Aligned_cols=16 Identities=25% Similarity=0.648 Sum_probs=12.8
Q ss_pred ccceeeeCCEEEEEec
Q 032704 66 HKMHVKAGDTVKVIAG 81 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~G 81 (135)
..+.+++||.|.|+.-
T Consensus 33 ~eLsf~~Gd~i~V~~~ 48 (92)
T 2o2o_A 33 DELELKVGDIIEVVGE 48 (92)
T ss_dssp SCCCBCSSCEEECCCG
T ss_pred ccccccCCCEEEEeEe
Confidence 3556899999999864
No 250
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=21.35 E-value=99 Score=27.45 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=24.0
Q ss_pred ceeeeCCEEEEEecCCCC-eEeEEEEEEccCCEEEE
Q 032704 68 MHVKAGDTVKVIAGCDKG-KIGEITKVFRHNSTVMV 102 (135)
Q Consensus 68 ~~I~kGD~V~VI~GkdKG-K~G~V~~V~r~~~~ViV 102 (135)
-+..-||+|.|--=+.+| .+|+|.+|....+.-+|
T Consensus 52 ~~a~~GD~V~v~i~~~~~~~eg~v~~iler~~~~~v 87 (644)
T 2id0_A 52 KKVMHGDRIIAVIHSEKERESAEPEELVEPFLTRFV 87 (644)
T ss_dssp TTSCTTCEEEEEEECCSSSCEEEEEEEEECSCSEEE
T ss_pred hcCCCCCEEEEEEecCCCCeEEEEEEEEecCCCEEE
Confidence 346789999985433333 68999998877664443
No 251
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...
Probab=21.13 E-value=60 Score=20.80 Aligned_cols=18 Identities=6% Similarity=0.226 Sum_probs=14.4
Q ss_pred ccceeeeCCEEEEEecCC
Q 032704 66 HKMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gkd 83 (135)
..+.+++||.|.|+.-.+
T Consensus 21 ~eLsf~~Gd~i~vl~~~~ 38 (84)
T 4ag1_C 21 TDLSFHKGEKFQILEFGP 38 (84)
T ss_dssp TBCCBCTTCEEEEEECCS
T ss_pred CcccccCCCEEEEEEecC
Confidence 456789999999998543
No 252
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.97 E-value=62 Score=20.12 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=13.4
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 22 ~eLs~~~Gd~i~v~~~~ 38 (79)
T 2yun_A 22 DELNLEKGDIVIIHEKK 38 (79)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CCcCCCCCCEEEEEEcC
Confidence 35568999999998753
No 253
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=20.83 E-value=44 Score=20.09 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=14.8
Q ss_pred cccceeeeCCEEEEEecCC
Q 032704 65 LHKMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 65 ~~k~~I~kGD~V~VI~Gkd 83 (135)
+.++.+..||.|.+..-.+
T Consensus 21 r~~lgi~~Gd~v~i~~~~~ 39 (53)
T 2l66_A 21 RQKFQIKEGDLVKVTFDES 39 (53)
T ss_dssp HHHSCCCTTCEEEEEECSS
T ss_pred HHHcCcCCCCEEEEEEECC
Confidence 4567899999999887543
No 254
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.63 E-value=50 Score=19.98 Aligned_cols=17 Identities=12% Similarity=0.382 Sum_probs=13.6
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 22 ~eLs~~~Gd~i~v~~~~ 38 (71)
T 2cre_A 22 DELAFSRGDILTILEQH 38 (71)
T ss_dssp SBCCCCSSCCEEEEESC
T ss_pred CCCCCCCCCEEEEeEcC
Confidence 35568999999999864
No 255
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A
Probab=20.50 E-value=68 Score=19.05 Aligned_cols=18 Identities=17% Similarity=0.492 Sum_probs=13.9
Q ss_pred ccceeeeCCEEEEEecCC
Q 032704 66 HKMHVKAGDTVKVIAGCD 83 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gkd 83 (135)
..+.+++||.+.|+.=.+
T Consensus 36 ~eLsf~~Gd~i~v~~~~~ 53 (62)
T 1g2b_A 36 REVTMKKGDILTLLNSTN 53 (62)
T ss_dssp TBCCBCTTCEEEEEECCS
T ss_pred CccCCCCCCEEEEEEecC
Confidence 355689999999997543
No 256
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=20.49 E-value=1.2e+02 Score=23.16 Aligned_cols=29 Identities=28% Similarity=0.611 Sum_probs=23.4
Q ss_pred cceeeeCCEEEEEecCC--CCeEeEEEEEEcc
Q 032704 67 KMHVKAGDTVKVIAGCD--KGKIGEITKVFRH 96 (135)
Q Consensus 67 k~~I~kGD~V~VI~Gkd--KGK~G~V~~V~r~ 96 (135)
...|++||-|.| .|.| .--+|+|.+++..
T Consensus 36 ~~~i~vGd~VLI-~~~D~~~PyVAki~~lye~ 66 (163)
T 4dov_A 36 EIHIKVGQFVLI-QGEDNKKPYVAKLIELFQN 66 (163)
T ss_dssp EEEEETTCEEEE-CCSSSSCCEEEEEEEEEEE
T ss_pred CeEEeeCCEEEE-eCCcccCChhHHHHHHHhc
Confidence 467999999998 6654 7789999999554
No 257
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.40 E-value=48 Score=20.12 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=13.4
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 23 ~eLs~~~Gd~i~v~~~~ 39 (71)
T 2dnu_A 23 DEIGFEKGVTVEVIRKN 39 (71)
T ss_dssp TBCCBCTTCEEEECCCC
T ss_pred CCCcCCCCCEEEEeECC
Confidence 45668999999998743
No 258
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.37 E-value=59 Score=20.78 Aligned_cols=17 Identities=18% Similarity=0.456 Sum_probs=13.6
Q ss_pred ccceeeeCCEEEEEecC
Q 032704 66 HKMHVKAGDTVKVIAGC 82 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~Gk 82 (135)
..+.+++||.|.|+.-.
T Consensus 32 ~eLsf~~Gd~i~v~~~~ 48 (88)
T 1x2q_A 32 NELTFKHGEIIIVLDDS 48 (88)
T ss_dssp SCCCCCSSCEEEEEECS
T ss_pred CccCCCCCCEEEEEEeC
Confidence 35668999999999843
No 259
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.23 E-value=35 Score=21.61 Aligned_cols=15 Identities=20% Similarity=0.428 Sum_probs=12.5
Q ss_pred ccceeeeCCEEEEEe
Q 032704 66 HKMHVKAGDTVKVIA 80 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~ 80 (135)
..+.+++||.+.|+.
T Consensus 32 ~eLs~~~Gd~i~v~~ 46 (79)
T 2cud_A 32 SPPIFRRGEKLRVIS 46 (79)
T ss_dssp SCCSSCTTCEEEEEE
T ss_pred CcCCCCCCCEEEEEe
Confidence 345689999999997
No 260
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=20.22 E-value=84 Score=25.41 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=22.5
Q ss_pred ccceeeeCCEEEEEecCCCCeEeEEEEEEccC
Q 032704 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHN 97 (135)
Q Consensus 66 ~k~~I~kGD~V~VI~GkdKGK~G~V~~V~r~~ 97 (135)
..=.|++||.|.++- ...++..+|.+|...+
T Consensus 226 ~~G~l~~gd~v~~~~-~~~~~~~~V~~i~~~~ 256 (397)
T 1d2e_A 226 ERGILKKGDECEFLG-HSKNIRTVVTGIEMFH 256 (397)
T ss_dssp CBSEEETTCEEEEEE-TTEEEEEEEEEEEETT
T ss_pred eeceEeCCCEEEEeC-CCCCeEEEEEEEEECC
Confidence 455799999998874 3234788888887654
No 261
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=20.16 E-value=1.7e+02 Score=18.97 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=12.3
Q ss_pred ccceeeeCCEEEEE
Q 032704 66 HKMHVKAGDTVKVI 79 (135)
Q Consensus 66 ~k~~I~kGD~V~VI 79 (135)
..+.+++||.|.|+
T Consensus 38 ~eLsf~~Gd~i~v~ 51 (96)
T 1wie_A 38 AELPLTAGKYLYVY 51 (96)
T ss_dssp TBCCCCTTCEEEEE
T ss_pred CeeeECCCCEEEEe
Confidence 56678999999999
Done!