BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032705
(135 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AVA|A Chain A, Solution Structure Of Stearoyl-Acyl Carrier Protein
pdb|2FVA|A Chain A, Structure Of 18:0-Acp With Docked Fatty Acid
pdb|2FVE|A Chain A, Structure Of 10:0-Acp (Protein Alone)
pdb|2FVF|A Chain A, Structure Of 10:0-Acp (Protein With Docked Fatty Acid)
Length = 82
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 36/46 (78%)
Query: 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTL 103
AK ET+ KV +IV+ +LAL A+ +T++S+FS LGADSLDTV + +
Sbjct: 1 AKKETIDKVSDIVKEKLALGADVVVTADSEFSKLGADSLDTVEIVM 46
>pdb|2XZ0|D Chain D, The Structure Of The 2:1 (Partially Occupied) Complex
Between Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ1|C Chain C, The Structure Of The 2:2 (Fully Occupied) Complex Between
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ1|D Chain D, The Structure Of The 2:2 (Fully Occupied) Complex Between
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (Castor Bean) And Acyl Carrier Protein
Length = 82
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 35/46 (76%)
Query: 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTL 103
AK ET+ KV +IV+ +LAL A+ +T++S+FS LGAD LDTV + +
Sbjct: 1 AKKETIDKVSDIVKEKLALGADVVVTADSEFSKLGADXLDTVEIVM 46
>pdb|2EHS|A Chain A, Crystal Structure Of Acyl Carrier Protein From Aquifex
Aeolicus (Form 1)
pdb|2EHT|A Chain A, Crystal Structure Of Acyl Carrier Protein From Aquifex
Aeolicus (Form 2)
Length = 77
Score = 34.3 bits (77), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 64 QKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTL 103
++V EI+ QL + E +T E+KF LGADSLD V L +
Sbjct: 4 ERVKEIIAEQLGVEKEK-ITPEAKFVEDLGADSLDVVELIM 43
>pdb|2K92|A Chain A, Structural Modification Of Acyl Carrier Protein By Butyryl
Group
pdb|2K93|A Chain A, Structural Modification Of Acyl Carrier Protein By Butyryl
Group
pdb|2K94|A Chain A, Structural Modification Of Acyl Carrier Protein By Butyryl
Group
Length = 77
Score = 33.5 bits (75), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 64 QKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSGNSD 110
++V +I+ +QL + E E+T+ + F LGADSLDTV L + L D
Sbjct: 5 ERVKKIIGQQLGVKQE-EVTNNASFVEDLGADSLDTVELVMALEEEFD 51
>pdb|2L0Q|A Chain A, Nmr Solution Structure Of Vibrio Harveyi Acyl Carrier
Protein (Acp)
Length = 80
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 64 QKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSGNSD 110
++V +I+ QL + E E+ +E+ F LGADSLDTV L + L D
Sbjct: 9 ERVKKIIVEQLGVD-EAEVKNEASFVDDLGADSLDTVELVMALEEEFD 55
>pdb|1L0I|A Chain A, Crystal Structure Of Butyryl-Acp I62m Mutant
Length = 78
Score = 33.1 bits (74), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 64 QKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSGNSD 110
++V +I+ QL + E E+T+ + F LGADSLDTV L + L D
Sbjct: 6 ERVKKIIGEQLGVKQE-EVTNNASFVEDLGADSLDTVELVMALEEEFD 52
>pdb|3EJB|A Chain A, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|C Chain C, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|E Chain E, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|G Chain G, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|A Chain A, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|C Chain C, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|E Chain E, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|G Chain G, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|A Chain A, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|C Chain C, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|E Chain E, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|G Chain G, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
Length = 97
Score = 33.1 bits (74), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 64 QKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSGNSD 110
++V +I+ QL + E E+T+ + F LGADSLDTV L + L D
Sbjct: 25 ERVKKIIGEQLGVKQE-EVTNNASFVEDLGADSLDTVELVMALEEEFD 71
>pdb|1L0H|A Chain A, Crystal Structure Of Butyryl-Acp From E.Coli
pdb|2FHS|C Chain C, Structure Of Acyl Carrier Protein Bound To Fabi, The Enoyl
Reductase From Escherichia Coli
pdb|3NY7|B Chain B, Stas Domain Of Ychm Bound To Acp
Length = 78
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 64 QKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSGNSD 110
++V +I+ QL + E E+T+ + F LGADSLDTV L + L D
Sbjct: 6 ERVKKIIGEQLGVKQE-EVTNNASFVEDLGADSLDTVELVMALEEEFD 52
>pdb|1T8K|A Chain A, Crystal Structure Of Apo Acyl Carrier Protein From E. Coli
pdb|2FAC|A Chain A, Crystal Structure Of E. Coli Hexanoyl-acp
pdb|2FAC|B Chain B, Crystal Structure Of E. Coli Hexanoyl-acp
pdb|2FAD|A Chain A, Crystal Structure Of E. Coli Heptanoyl-Acp
pdb|2FAD|B Chain B, Crystal Structure Of E. Coli Heptanoyl-Acp
pdb|2FAE|A Chain A, Crystal Structure Of E. Coli Decanoyl-Acp
pdb|2FAE|B Chain B, Crystal Structure Of E. Coli Decanoyl-Acp
pdb|1ACP|A Chain A, Refinement Of The Nmr Structures For Acyl Carrier Protein
With Scalar Coupling Data
pdb|4ETW|D Chain D, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|B Chain B, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 77
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 64 QKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSGNSD 110
++V +I+ QL + E E+T+ + F LGADSLDTV L + L D
Sbjct: 5 ERVKKIIGEQLGVKQE-EVTNNASFVEDLGADSLDTVELVMALEEEFD 51
>pdb|2L3V|A Chain A, Nmr Structure Of Acyl Carrier Protein From Brucella
Melitensis
Length = 79
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 61 ETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTL 103
+T ++V +IV L + A+ S LGADSLDTV L +
Sbjct: 4 DTAERVKKIVVEHLGVDADKVTEGASFIDDLGADSLDTVELVM 46
>pdb|1X3O|A Chain A, Crystal Structure Of The Acyl Carrier Protein From Thermus
Thermophilus Hb8
Length = 80
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 59 KPETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSGNSDELRRRIW 117
+ E +KV ++ +L + E +T E++F LGADSLDTV L + G DE I
Sbjct: 3 EQEIFEKVKAVIADKLQVEPEK-VTLEARFIEDLGADSLDTVELIM---GLEDEFGLEIS 58
Query: 118 D 118
D
Sbjct: 59 D 59
>pdb|2X2B|A Chain A, Crystal Structure Of Malonyl-Acp (Acyl Carrier Protein)
From Bacillus Subtilis
Length = 78
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 60 PETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSGNSDELRRRIWD 118
+T+++V +I+ +L + E ++ E+ F LGADSLD V L + L DE I D
Sbjct: 3 ADTLERVTKIIVDRLGVD-EADVKLEASFKEDLGADSLDVVELVMEL---EDEFDMEISD 58
>pdb|1HY8|A Chain A, Solution Structure Of B. Subtilis Acyl Carrier Protein
Length = 76
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 61 ETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSGNSDELRRRIWD 118
+T+++V +I+ +L + E ++ E+ F LGADSLD V L + L DE I D
Sbjct: 2 DTLERVTKIIVDRLGVD-EADVKLEASFKEDLGADSLDVVELVMEL---EDEFDMEISD 56
>pdb|4DXE|H Chain H, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|L Chain L, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|K Chain K, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|G Chain G, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|J Chain J, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|I Chain I, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
Length = 101
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 61 ETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSGNSDELRRRIWD 118
E KV +I+ +L + A+ ++T ++ F LGADSLD L + L DE I D
Sbjct: 26 ENFDKVKDIIVDRLGVDAD-KVTEDASFKDDLGADSLDIAELVMEL---EDEFGTEIPD 80
>pdb|3GZL|A Chain A, Crystal Structure Of Holo Pfacp Disulfide-Linked Dimer
pdb|3GZM|A Chain A, Crystal Structure Of Holo Pfacp Reduced Monomer
pdb|3GZM|B Chain B, Crystal Structure Of Holo Pfacp Reduced Monomer
Length = 81
Score = 28.9 bits (63), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 62 TVQKVCEIVRRQLALPAETELTSESKFSA-LGADSLDTVHLTLLL 105
T + +I+ +QL++ E ++ S F+ LGADSLD V L + L
Sbjct: 6 TFDDIKKIISKQLSVE-EDKIQMNSNFTKDLGADSLDLVELIMAL 49
>pdb|2FQ0|A Chain A, Solution Structure Of Major Conformation Of Holo-Acyl
Carrier Protein From Malaria Parasite Plasmodium
Falciparum
pdb|2FQ2|A Chain A, Solution Structure Of Minor Conformation Of Holo-Acyl
Carrier Protein From Malaria Parasite Plasmodium
Falciparum
Length = 79
Score = 28.9 bits (63), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 62 TVQKVCEIVRRQLALPAETELTSESKFSA-LGADSLDTVHLTLLL 105
T + +I+ +QL++ E ++ S F+ LGADSLD V L + L
Sbjct: 4 TFDDIKKIISKQLSVE-EDKIQMNSNFTKDLGADSLDLVELIMAL 47
>pdb|2LOL|A Chain A, Nmr Structure Of An Acyl-Carrier Protein From Rickettsia
Prowazekii, Seattle Structural Genomics Center For
Infectious Disease (Ssgcid)
Length = 81
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 64 QKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLL 105
QKV E+V +L + +T++S+F L ADSLDTV L + +
Sbjct: 9 QKVIEMVAEKLN-KDKAIITTDSRFIEDLKADSLDTVELMMAI 50
>pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
Length = 1025
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 54 VSCSAKPETVQKVCEIVRRQLALPAETELT 83
++C PE V+ +C VR+ + +P +LT
Sbjct: 682 LACGQDPELVRNICRWVRQAVQIPFFAKLT 711
>pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
Length = 1025
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 54 VSCSAKPETVQKVCEIVRRQLALPAETELT 83
++C PE V+ +C VR+ + +P +LT
Sbjct: 682 LACGQDPELVRNICRWVRQAVQIPFFAKLT 711
>pdb|2ZUH|A Chain A, Crystal Structure Of Camphor-Soaked Ferric Cytochrome
P450cam Mutant (D297a)
Length = 415
Score = 26.9 bits (58), Expect = 3.9, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 59 KPETVQKVCEIVRRQLALPAETE-LTSESKFSALGADSLDTVHLTLLLSG 107
+PE + CE + R+ +L A LTS+ +F + D + L +LSG
Sbjct: 278 RPERIPAACEELLRRFSLVAAGRILTSDYEFHGVQLKKGDQILLPQMLSG 327
>pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat
pdb|2GBC|B Chain B, Native Dpp-Iv (Cd26) From Rat
pdb|2GBF|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBF|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBG|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBG|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBI|A Chain A, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2GBI|B Chain B, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2I3Z|A Chain A, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2I3Z|B Chain B, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2OAE|A Chain A, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|2OAE|B Chain B, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|4FFV|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFV|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFW|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
pdb|4FFW|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
Length = 730
Score = 26.6 bits (57), Expect = 4.6, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 12/65 (18%)
Query: 49 TNRFCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGN 108
TN+ C+SC PE Q L+ E+K+ LG TL S +
Sbjct: 404 TNKKCLSCDLNPERCQYY------------SVSLSKEAKYYQLGCRGPGLPLYTLHRSTD 451
Query: 109 SDELR 113
ELR
Sbjct: 452 QKELR 456
>pdb|1UT1|A Chain A, Drae Adhesin From Escherichia Coli
pdb|1UT1|B Chain B, Drae Adhesin From Escherichia Coli
pdb|1UT1|C Chain C, Drae Adhesin From Escherichia Coli
pdb|1UT1|D Chain D, Drae Adhesin From Escherichia Coli
pdb|1UT1|E Chain E, Drae Adhesin From Escherichia Coli
pdb|1UT1|F Chain F, Drae Adhesin From Escherichia Coli
Length = 148
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 60 PETVQKV-CEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNS 109
P TVQ + C+ RQ+AL A+T+ + KF + ++ D +++ + + NS
Sbjct: 52 PVTVQALGCDA--RQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNS 100
>pdb|1USQ|A Chain A, Complex Of E. Coli Drae Adhesin With Chloramphenicol
pdb|1USQ|B Chain B, Complex Of E. Coli Drae Adhesin With Chloramphenicol
pdb|1USQ|C Chain C, Complex Of E. Coli Drae Adhesin With Chloramphenicol
pdb|1USQ|D Chain D, Complex Of E. Coli Drae Adhesin With Chloramphenicol
pdb|1USQ|E Chain E, Complex Of E. Coli Drae Adhesin With Chloramphenicol
pdb|1USQ|F Chain F, Complex Of E. Coli Drae Adhesin With Chloramphenicol
pdb|2JKJ|A Chain A, Drae Adhesin In Complex With Chloramphenicol Succinate
pdb|2JKJ|B Chain B, Drae Adhesin In Complex With Chloramphenicol Succinate
pdb|2JKJ|C Chain C, Drae Adhesin In Complex With Chloramphenicol Succinate
pdb|2JKJ|D Chain D, Drae Adhesin In Complex With Chloramphenicol Succinate
pdb|2JKJ|E Chain E, Drae Adhesin In Complex With Chloramphenicol Succinate
pdb|2JKJ|F Chain F, Drae Adhesin In Complex With Chloramphenicol Succinate
pdb|2JKL|A Chain A, Drae Adhesin In Complex With Bromamphenicol
pdb|2JKL|B Chain B, Drae Adhesin In Complex With Bromamphenicol
pdb|2JKL|C Chain C, Drae Adhesin In Complex With Bromamphenicol
pdb|2JKL|D Chain D, Drae Adhesin In Complex With Bromamphenicol
pdb|2JKL|E Chain E, Drae Adhesin In Complex With Bromamphenicol
pdb|2JKL|F Chain F, Drae Adhesin In Complex With Bromamphenicol
pdb|2JKN|A Chain A, Drae Adhesin In Complex With Chloramphenicol Succinate (
Trigonal Form)
pdb|2JKN|B Chain B, Drae Adhesin In Complex With Chloramphenicol Succinate (
Trigonal Form)
pdb|2JKN|C Chain C, Drae Adhesin In Complex With Chloramphenicol Succinate (
Trigonal Form)
pdb|2JKN|D Chain D, Drae Adhesin In Complex With Chloramphenicol Succinate (
Trigonal Form)
pdb|2JKN|E Chain E, Drae Adhesin In Complex With Chloramphenicol Succinate (
Trigonal Form)
pdb|2JKN|F Chain F, Drae Adhesin In Complex With Chloramphenicol Succinate (
Trigonal Form)
pdb|2W5P|A Chain A, Drae Adhesin In Complex With Chloramphenicol Succinate (
Monoclinic Form)
pdb|2W5P|B Chain B, Drae Adhesin In Complex With Chloramphenicol Succinate (
Monoclinic Form)
pdb|2W5P|C Chain C, Drae Adhesin In Complex With Chloramphenicol Succinate (
Monoclinic Form)
Length = 149
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 60 PETVQKV-CEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNS 109
P TVQ + C+ RQ+AL A+T+ + KF + ++ D +++ + + NS
Sbjct: 53 PVTVQALGCDA--RQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNS 101
>pdb|1LKV|X Chain X, Crystal Structure Of The Middle And C-terminal Domains Of
The Flagellar Rotor Protein Flig
Length = 232
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 95 SLDTVHLTLLLSGNSDELRRRIW 117
+DT L L L G SDEL+ +I+
Sbjct: 152 EVDTRDLALALKGASDELKEKIF 174
>pdb|4FHR|B Chain B, Crystal Structure Of The Complex Between The Flagellar
Motor Proteins Flig And Flim
Length = 216
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 95 SLDTVHLTLLLSGNSDELRRRIW 117
+DT L L L G SDEL+ +I+
Sbjct: 144 EVDTRDLALALKGASDELKEKIF 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.130 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,829,851
Number of Sequences: 62578
Number of extensions: 129661
Number of successful extensions: 325
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 30
length of query: 135
length of database: 14,973,337
effective HSP length: 88
effective length of query: 47
effective length of database: 9,466,473
effective search space: 444924231
effective search space used: 444924231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)