Query 032705
Match_columns 135
No_of_seqs 201 out of 1252
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 04:53:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032705.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032705hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1748 Acyl carrier protein/N 99.7 1.5E-17 3.2E-22 125.6 2.7 57 56-113 48-105 (131)
2 PRK07117 acyl carrier protein; 99.6 2E-15 4.3E-20 104.5 5.2 70 57-127 1-73 (79)
3 PRK05350 acyl carrier protein; 99.5 4.4E-15 9.6E-20 101.9 2.7 72 57-129 2-76 (82)
4 PRK12449 acyl carrier protein; 99.5 7.3E-15 1.6E-19 99.6 3.4 72 57-129 1-75 (80)
5 PRK05883 acyl carrier protein; 99.5 8.7E-15 1.9E-19 103.4 3.6 74 56-130 9-85 (91)
6 PRK05828 acyl carrier protein; 99.5 1E-14 2.2E-19 102.1 2.9 69 57-126 1-72 (84)
7 PRK07639 acyl carrier protein; 99.5 7.8E-14 1.7E-18 97.5 6.4 73 57-129 1-78 (86)
8 CHL00124 acpP acyl carrier pro 99.5 1.5E-14 3.2E-19 98.5 2.0 73 57-130 1-76 (82)
9 PRK06508 acyl carrier protein; 99.4 1.7E-13 3.7E-18 97.7 6.0 64 60-124 2-68 (93)
10 PRK08172 putative acyl carrier 99.4 4E-14 8.7E-19 98.3 2.2 65 61-126 4-71 (82)
11 COG0236 AcpP Acyl carrier prot 99.4 1.3E-13 2.8E-18 94.2 3.9 70 59-129 3-75 (80)
12 TIGR00517 acyl_carrier acyl ca 99.4 1.3E-13 2.8E-18 92.8 2.1 69 60-129 2-73 (77)
13 PRK09184 acyl carrier protein; 99.4 1.4E-13 3.1E-18 97.2 1.9 73 58-131 3-85 (89)
14 PTZ00171 acyl carrier protein; 99.4 2E-13 4.4E-18 104.6 2.7 60 54-114 63-123 (148)
15 PRK00982 acpP acyl carrier pro 99.2 4.1E-12 9E-17 85.4 1.7 69 60-129 2-73 (78)
16 PF00550 PP-binding: Phosphopa 99.2 7.3E-12 1.6E-16 80.8 1.4 60 64-124 1-62 (67)
17 PRK07081 acyl carrier protein; 99.1 6.8E-11 1.5E-15 82.0 4.3 66 63-128 2-72 (83)
18 PRK05087 D-alanine--poly(phosp 99.0 6.9E-10 1.5E-14 76.6 5.0 52 61-113 2-54 (78)
19 TIGR01688 dltC D-alanine--poly 98.6 3.4E-08 7.4E-13 67.9 3.8 49 64-113 2-51 (73)
20 PF14573 PP-binding_2: Acyl-ca 98.3 1.4E-06 2.9E-11 62.7 4.7 52 60-113 9-66 (96)
21 smart00823 PKS_PP Phosphopante 98.1 3.1E-06 6.8E-11 54.0 3.0 65 60-124 11-77 (86)
22 TIGR02813 omega_3_PfaA polyket 98.0 3.3E-06 7.1E-11 86.9 3.2 51 59-110 1305-1356(2582)
23 PRK06060 acyl-CoA synthetase; 97.7 2.2E-05 4.7E-10 70.3 2.2 53 61-113 545-597 (705)
24 TIGR03443 alpha_am_amid L-amin 97.3 0.00019 4.1E-09 68.7 3.0 54 59-113 846-899 (1389)
25 PF07377 DUF1493: Protein of u 97.2 0.00097 2.1E-08 48.3 5.4 54 60-113 2-59 (111)
26 PRK10252 entF enterobactin syn 97.1 0.00041 9E-09 65.5 3.3 53 58-113 975-1027(1296)
27 PRK12467 peptide synthase; Pro 96.8 0.00099 2.1E-08 70.7 3.8 66 58-126 3602-3669(3956)
28 TIGR02813 omega_3_PfaA polyket 96.6 0.0016 3.4E-08 67.9 3.7 52 58-110 1208-1260(2582)
29 PRK12467 peptide synthase; Pro 96.4 0.0026 5.6E-08 67.7 3.7 69 58-129 1027-1097(3956)
30 PRK05691 peptide synthase; Val 96.2 0.0031 6.7E-08 67.4 3.1 66 58-126 4238-4305(4334)
31 PRK12316 peptide synthase; Pro 96.1 0.0038 8.3E-08 67.7 3.0 66 58-126 5069-5136(5163)
32 PRK05691 peptide synthase; Val 96.0 0.0046 1E-07 66.2 3.3 53 58-113 583-635 (4334)
33 PRK12316 peptide synthase; Pro 96.0 0.0066 1.4E-07 66.0 4.4 68 58-128 2513-2582(5163)
34 KOG1202 Animal-type fatty acid 95.9 0.0062 1.3E-07 60.6 3.1 49 65-113 2008-2056(2376)
35 COG3433 Aryl carrier domain [S 93.4 0.083 1.8E-06 36.7 2.8 42 66-108 3-44 (74)
36 TIGR02372 4_coum_CoA_lig 4-cou 92.0 0.37 8E-06 41.3 5.6 56 58-113 4-69 (386)
37 cd04762 HTH_MerR-trunc Helix-T 73.5 5.3 0.00011 22.9 3.1 27 104-130 5-31 (49)
38 TIGR01764 excise DNA binding d 66.6 6.2 0.00013 22.8 2.3 28 104-131 6-33 (49)
39 cd04761 HTH_MerR-SF Helix-Turn 63.0 13 0.00028 21.8 3.3 26 103-128 4-29 (49)
40 PF08766 DEK_C: DEK C terminal 52.7 18 0.00039 22.7 2.8 28 92-119 17-44 (54)
41 COG1669 Predicted nucleotidylt 43.9 71 0.0015 23.2 5.0 54 60-113 8-74 (97)
42 smart00422 HTH_MERR helix_turn 43.2 39 0.00085 21.1 3.3 32 103-134 4-35 (70)
43 KOG1178 Non-ribosomal peptide 43.2 22 0.00048 35.3 3.0 34 80-113 614-647 (1032)
44 PF12728 HTH_17: Helix-turn-he 40.5 30 0.00064 20.8 2.3 26 104-129 6-31 (51)
45 PRK00157 rplL 50S ribosomal pr 39.1 25 0.00055 26.4 2.2 22 93-114 15-36 (123)
46 PF11198 DUF2857: Protein of u 37.8 39 0.00084 26.4 3.1 29 93-121 147-175 (180)
47 PF13592 HTH_33: Winged helix- 37.7 59 0.0013 20.6 3.5 30 97-126 6-37 (60)
48 TIGR00855 L12 ribosomal protei 37.4 28 0.0006 26.4 2.2 23 93-115 16-38 (126)
49 KOG2452 Formyltetrahydrofolate 37.0 46 0.001 31.2 3.9 49 60-110 321-369 (881)
50 COG0222 RplL Ribosomal protein 34.7 32 0.00069 26.1 2.1 18 96-113 18-35 (124)
51 cd01106 HTH_TipAL-Mta Helix-Tu 30.6 73 0.0016 22.1 3.3 31 104-134 5-35 (103)
52 CHL00083 rpl12 ribosomal prote 30.2 43 0.00093 25.5 2.2 21 94-114 16-36 (131)
53 PF05930 Phage_AlpA: Prophage 27.5 27 0.00058 21.5 0.6 26 104-129 8-33 (51)
54 cd01104 HTH_MlrA-CarA Helix-Tu 25.8 1.1E+02 0.0025 18.9 3.3 32 103-134 4-35 (68)
55 PF13411 MerR_1: MerR HTH fami 23.8 1.2E+02 0.0026 18.8 3.2 27 103-129 4-30 (69)
56 cd04772 HTH_TioE_rpt1 First He 23.8 1.2E+02 0.0025 21.1 3.4 31 104-134 5-35 (99)
57 cd00387 Ribosomal_L7_L12 Ribos 23.2 68 0.0015 24.1 2.1 21 94-114 14-34 (127)
58 cd00592 HTH_MerR-like Helix-Tu 22.2 1.2E+02 0.0027 20.5 3.2 27 104-130 5-31 (100)
59 cd04763 HTH_MlrA-like Helix-Tu 22.1 1.5E+02 0.0032 18.7 3.3 31 104-134 5-35 (68)
60 cd01763 Sumo Small ubiquitin-r 20.8 12 0.00027 25.4 -2.1 46 58-103 29-82 (87)
No 1
>KOG1748 consensus Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit [Energy production and conversion; Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.68 E-value=1.5e-17 Score=125.55 Aligned_cols=57 Identities=35% Similarity=0.506 Sum_probs=55.2
Q ss_pred CCChHHHHHHHHHHHHHHcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHhhcCcch
Q 032705 56 CSAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSGNSDELR 113 (135)
Q Consensus 56 ~~ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~-DLG~DSLD~VEIvm~LEeeFgI~i 113 (135)
|++++++.++|..+|+++..+++ +.++.+++|. |||+||||+|||||+|||||||++
T Consensus 48 ~l~k~~v~~RVl~VVk~~dki~~-~k~~~~s~f~~DLGlDSLD~VEiVMAlEEEFgiEI 105 (131)
T KOG1748|consen 48 CLAKKEVVDRVLDVVKKFDKIDP-SKLTTDSDFFKDLGLDSLDTVEIVMALEEEFGIEI 105 (131)
T ss_pred hhhHHHHHHHHHHHHHHhhcCCc-cccchhhHHHHhcCCcccccchhhhhhHHHhCCcc
Confidence 89999999999999999999987 6899999998 999999999999999999999998
No 2
>PRK07117 acyl carrier protein; Validated
Probab=99.58 E-value=2e-15 Score=104.52 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=59.1
Q ss_pred CChHHHHHHHHHHHHHHc-CCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCCCCC
Q 032705 57 SAKPETVQKVCEIVRRQL-ALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGKLPE 127 (135)
Q Consensus 57 ~ak~ei~~~V~eII~e~l-~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~l~~ 127 (135)
+++++++++|+++|++++ ++++ ++|+++++|.|||+||||++||++++|++|||+++ ...+..+-||+-.
T Consensus 1 M~~~ei~~~v~~ii~e~~p~i~~-~~I~~~~~l~DLg~DSlD~veiv~~led~f~i~I~~~~~~~i~Tv~d~v~ 73 (79)
T PRK07117 1 MDKQRIFDILVRHIREVLPDLDQ-HQFQPEDSLVDLGANSMDRAEIVIMTLESLSLKIPLVEFAGAKNIGELAD 73 (79)
T ss_pred CCHHHHHHHHHHHHHHHcCCCCH-HHCCCCCChhhcCCChHHHHHHHHHHHHHHCCccCHHHHHhcCCHHHHHH
Confidence 367899999999999999 6986 69999999999999999999999999999999984 2334445555443
No 3
>PRK05350 acyl carrier protein; Provisional
Probab=99.52 E-value=4.4e-15 Score=101.87 Aligned_cols=72 Identities=15% Similarity=0.225 Sum_probs=62.6
Q ss_pred CChHHHHHHHHHHHHHHcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCCCCCCc
Q 032705 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGKLPEHH 129 (135)
Q Consensus 57 ~ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~-DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~l~~~~ 129 (135)
+++++++++|+++|++++++++ .+|+++++|. |||+|||++++|+++||++|||+++ .+.++.+-|++.+++
T Consensus 2 m~~~~i~~~v~~ii~~~~~~~~-~~i~~d~~l~~dlg~DSld~veli~~lE~~fgI~i~~~~~~~~~Tv~dlv~~v 76 (82)
T PRK05350 2 MTREEILERLRAILVELFEIDP-EDITPEANLYEDLDLDSIDAVDLVVHLQKLTGKKIKPEEFKSVRTVQDVVDAV 76 (82)
T ss_pred CCHHHHHHHHHHHHHHHhCCCH-HHCCCCccchhhcCCCHHHHHHHHHHHHHHHCCccCHHHHhhcCcHHHHHHHH
Confidence 4688999999999999999987 6999999985 9999999999999999999999974 466676777766544
No 4
>PRK12449 acyl carrier protein; Provisional
Probab=99.52 E-value=7.3e-15 Score=99.59 Aligned_cols=72 Identities=14% Similarity=0.245 Sum_probs=63.3
Q ss_pred CChHHHHHHHHHHHHHHcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCCCCCCc
Q 032705 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGKLPEHH 129 (135)
Q Consensus 57 ~ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~-DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~l~~~~ 129 (135)
++++++.++|++++++++++++ ..|+++++|. |||+||+++++|+++||++|||.++ .+++..+-|+|.+|.
T Consensus 1 m~~~~i~~~l~~il~~~~~~~~-~~i~~~~~l~~dlg~DSl~~~~li~~lE~~f~i~i~~~~~~~~~ti~~l~~~l 75 (80)
T PRK12449 1 MTREEIFERLINLIQKQRSYLS-LAITEQTHLKDDLAVDSIELVEFIINVEDEFHIAIPDEDVEDMVSMGDLLDYL 75 (80)
T ss_pred CCHHHHHHHHHHHHHHHhCCCc-cccCCCCcHHHHcCCcHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHH
Confidence 3688999999999999999986 6999999996 9999999999999999999999984 466777777776654
No 5
>PRK05883 acyl carrier protein; Validated
Probab=99.51 E-value=8.7e-15 Score=103.41 Aligned_cols=74 Identities=15% Similarity=0.167 Sum_probs=65.1
Q ss_pred CCChHHHHHHHHHHHHHHcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCCCCCCcC
Q 032705 56 CSAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGKLPEHHN 130 (135)
Q Consensus 56 ~~ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~-DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~l~~~~~ 130 (135)
+.++.++.++|+++|++++++++ ..|+++++|. +||+|||++++|+++||++|||+++ .+++.-+-|||.+|+.
T Consensus 9 ~~~~~~I~~~l~~iia~~l~v~~-~~I~~d~~l~~dlg~DSL~~v~lv~~lE~~fgI~i~~ee~~~~~TV~dl~~~v~ 85 (91)
T PRK05883 9 TSSPSTVSATLLSILRDDLNVDL-TRVTPDARLVDDVGLDSVAFAVGMVAIEERLGVALSEEDLLSCDTVGDLEAAIA 85 (91)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCh-hhCCCCCchhhccCCChHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHH
Confidence 56889999999999999999987 6999999996 9999999999999999999999984 4667777777766543
No 6
>PRK05828 acyl carrier protein; Validated
Probab=99.50 E-value=1e-14 Score=102.13 Aligned_cols=69 Identities=19% Similarity=0.220 Sum_probs=57.6
Q ss_pred CChHHHHHHHHHHHHH-HcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCCCC
Q 032705 57 SAKPETVQKVCEIVRR-QLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGKLP 126 (135)
Q Consensus 57 ~ak~ei~~~V~eII~e-~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~l~ 126 (135)
+++.+++++|++|+++ +++++. ++++++++|.|||+||||++||+++||++|||+++ .+.+..+-||+-
T Consensus 1 m~~~eI~~~i~~ii~e~~~~~~~-d~i~~~~~~~dLg~DSLd~velv~~lE~~f~I~i~~e~~~~i~Tv~d~~ 72 (84)
T PRK05828 1 MQEMEILLKIKEIAKKKNFAVTL-DESNINKPYRELKIDSLDMFSIIVSLESEFNIEFSDEKLMKLKNLADLI 72 (84)
T ss_pred CCHHHHHHHHHHHHHHhccCCCc-ccccCCCCHHhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHH
Confidence 4688999999999998 688876 68999999999999999999999999999999984 233343444443
No 7
>PRK07639 acyl carrier protein; Provisional
Probab=99.48 E-value=7.8e-14 Score=97.53 Aligned_cols=73 Identities=16% Similarity=0.186 Sum_probs=59.6
Q ss_pred CChHHHHHHHHHHHHHHcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHhhcCcchhh--h--hhHhhhCCCCCCc
Q 032705 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSGNSDELRRR--I--WDWCRRGKLPEHH 129 (135)
Q Consensus 57 ~ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~-DLG~DSLD~VEIvm~LEeeFgI~i~~--~--~~~~~~~~l~~~~ 129 (135)
+++++++++|++||++++++++.++++++++|. |||+||+|+++|+++||++|||+++. + ..+.+-+++.+|+
T Consensus 1 M~~~ei~~~i~~il~e~l~~~~~~~i~~d~~l~edL~lDSld~velv~~lE~~fgi~i~d~~~~~~~~~Tv~~l~~~i 78 (86)
T PRK07639 1 MRREALKNAVLKIMEEKLELKNVTHLEETMRLNEDLYIDSVMMLQLIVYIEMDVKLCVPEDEVDPKAFLTVGSLLDFM 78 (86)
T ss_pred CCHHHHHHHHHHHHHHHhCCCccccCCCCCCcccccCCChHHHHHHHHHHHHHHCCccCHHHccHHHhCCHHHHHHHH
Confidence 468899999999999999997535899999997 99999999999999999999999842 2 2344555554443
No 8
>CHL00124 acpP acyl carrier protein; Validated
Probab=99.47 E-value=1.5e-14 Score=98.50 Aligned_cols=73 Identities=27% Similarity=0.320 Sum_probs=62.5
Q ss_pred CChHHHHHHHHHHHHHHcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCCCCCCcC
Q 032705 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGKLPEHHN 130 (135)
Q Consensus 57 ~ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~-DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~l~~~~~ 130 (135)
++++++.++|++++++.+++++ ..|+++++|. |||+||++++||+++||++|||+++ .++++-+-++|.+|+.
T Consensus 1 M~~~~i~~~l~~ii~~~~~~~~-~~i~~d~~l~~dlg~DSl~~~eli~~le~~f~i~i~~~~~~~~~tv~~l~~~i~ 76 (82)
T CHL00124 1 MTKNDIFEKVQSIVAEQLGIEK-SEVTLDANFTRDLGADSLDVVELVMAIEEKFDIEIPDEDAEKISTLQEAVDFIS 76 (82)
T ss_pred CCHHHHHHHHHHHHHHHHCCCH-HHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCccCHHHHHHcCCHHHHHHHHH
Confidence 4688999999999999999986 6899999997 7999999999999999999999984 3556666666655543
No 9
>PRK06508 acyl carrier protein; Provisional
Probab=99.45 E-value=1.7e-13 Score=97.70 Aligned_cols=64 Identities=25% Similarity=0.311 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCC
Q 032705 60 PETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGK 124 (135)
Q Consensus 60 ~ei~~~V~eII~e~l~l~~~~~It~dt~f~-DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~ 124 (135)
..++++|++||++++++++ .+|+++++|. |||+||||++||+++||++|||+++ .+.++.+.|+
T Consensus 2 ~~i~ekv~~Ilae~~~vd~-~~It~ds~~~edL~~DSLd~veli~~lE~eFgI~i~~ee~~~~~n~~~ 68 (93)
T PRK06508 2 SSTFDKVADIIAETSDIPR-DTITPESHTIDDLGIDSLDFLDIVFAIDKAFGIKLPLEQWTQEVNEGK 68 (93)
T ss_pred hHHHHHHHHHHHHHhCCCH-HHCCCCCcchhccCCCHHHHHHHHHHHHHHHCCccCHHHHHHhhcccc
Confidence 4689999999999999987 6999999996 9999999999999999999999984 3444445454
No 10
>PRK08172 putative acyl carrier protein IacP; Validated
Probab=99.44 E-value=4e-14 Score=98.33 Aligned_cols=65 Identities=18% Similarity=0.221 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCCCC
Q 032705 61 ETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGKLP 126 (135)
Q Consensus 61 ei~~~V~eII~e~l~l~~~~~It~dt~f~-DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~l~ 126 (135)
+++++|++++++++++++ ++|+++++|. |||+|||++++|+++||++|||+++ .+.+..+-||+.
T Consensus 4 ~i~~~v~~iiae~l~v~~-~~i~~d~~l~~dL~~DSld~v~lv~~lEe~F~I~i~~~d~~~i~Tv~di~ 71 (82)
T PRK08172 4 DIEARVKKVITSCIAVDV-DSINGQTHLVEDLYADSLDLIDIVFGLSEEFDISCNENDLPDMTTFADIC 71 (82)
T ss_pred cHHHHHHHHHHHHHCCCH-HHCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHCCCHHHHH
Confidence 789999999999999997 6999999996 9999999999999999999999983 344444444443
No 11
>COG0236 AcpP Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.42 E-value=1.3e-13 Score=94.17 Aligned_cols=70 Identities=27% Similarity=0.321 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCCCCCCc
Q 032705 59 KPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGKLPEHH 129 (135)
Q Consensus 59 k~ei~~~V~eII~e~l~l~~~~~It~dt~f~-DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~l~~~~ 129 (135)
...+.++|+++++++++.+. .++++++.|. |||+||||++||+++||++|||+++ .+..|-+-|+|.+++
T Consensus 3 ~~~~~~~i~~ii~e~l~~~~-~~i~~~~~~~~dlg~DSld~veLi~~lE~~f~i~i~~e~~~~~~tv~~l~~~i 75 (80)
T COG0236 3 MEAIEERVKDIIAEQLGVDE-EEITTEASFVEDLGLDSLDLVELVMALEEEFGIEIPDEELENIKTVGDLVDYI 75 (80)
T ss_pred hHHHHHHHHHHHHHHhCCch-hhcCcccccccccCccHHHHHHHHHHHHHHHCCcCCHHHHHHHHhHHHHHHHH
Confidence 45689999999999999985 6899999998 8999999999999999999999984 466777777776554
No 12
>TIGR00517 acyl_carrier acyl carrier protein. S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site.
Probab=99.39 E-value=1.3e-13 Score=92.82 Aligned_cols=69 Identities=30% Similarity=0.362 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCCCCCCc
Q 032705 60 PETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGKLPEHH 129 (135)
Q Consensus 60 ~ei~~~V~eII~e~l~l~~~~~It~dt~f~-DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~l~~~~ 129 (135)
.++.++|++++++.+++++ .+++++++|. |||+|||+++||++.||++|||+++ .+.++.+-|++.+++
T Consensus 2 ~~i~~~l~~il~~~~~~~~-~~i~~~~~l~~dlglDSl~~veli~~lE~~f~i~i~~~~~~~~~tv~~l~~~i 73 (77)
T TIGR00517 2 QEIFEKVKAIIKEQLNVDE-DQVTPDASFVEDLGADSLDTVELVMALEEEFDIEIPDEEAEKIATVGDAVDYI 73 (77)
T ss_pred hHHHHHHHHHHHHHHCCCH-HHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCCCCHHHHHHCCcHHHHHHHH
Confidence 5789999999999999986 6899999996 9999999999999999999999984 344555656655443
No 13
>PRK09184 acyl carrier protein; Provisional
Probab=99.38 E-value=1.4e-13 Score=97.23 Aligned_cols=73 Identities=16% Similarity=0.261 Sum_probs=60.7
Q ss_pred ChHHHHHHHHHHHHHHcCC---CCCCCCCCCCCc-c-ccCCchhhHHHHHHHHHhhcCcchh--h---hhhHhhhCCCCC
Q 032705 58 AKPETVQKVCEIVRRQLAL---PAETELTSESKF-S-ALGADSLDTVHLTLLLSGNSDELRR--R---IWDWCRRGKLPE 127 (135)
Q Consensus 58 ak~ei~~~V~eII~e~l~l---~~~~~It~dt~f-~-DLG~DSLD~VEIvm~LEeeFgI~i~--~---~~~~~~~~~l~~ 127 (135)
..++++++|+++|++++++ ++ ++|+++++| . +||+||||++||++++|++|||+++ . ++...+-++|.+
T Consensus 3 ~~~~l~~~l~~~I~e~l~~~~i~~-~~I~~d~~l~~~dLglDSld~velv~~lE~~fgi~i~~~~~~~~~~~~TV~~l~~ 81 (89)
T PRK09184 3 SMTALERELAELIVEELNLEDVQP-ESIDADAPLYGEGLGLDSIDILEIALVISKRYGFQLRSDNPDNQRIFASLRALAA 81 (89)
T ss_pred hHHHHHHHHHHHHHHHHCCCCCCH-HHCCCCcccccccCCCcHHHHHHHHHHHHHHHCCcCCCcchhhhhccCCHHHHHH
Confidence 4568999999999999986 54 699999997 4 7999999999999999999999983 1 444567777777
Q ss_pred CcCC
Q 032705 128 HHNG 131 (135)
Q Consensus 128 ~~~~ 131 (135)
|+..
T Consensus 82 ~I~~ 85 (89)
T PRK09184 82 YVAA 85 (89)
T ss_pred HHHH
Confidence 7644
No 14
>PTZ00171 acyl carrier protein; Provisional
Probab=99.37 E-value=2e-13 Score=104.56 Aligned_cols=60 Identities=28% Similarity=0.364 Sum_probs=55.3
Q ss_pred ccCCChHHHHHHHHHHHHHHcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHhhcCcchh
Q 032705 54 VSCSAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSGNSDELRR 114 (135)
Q Consensus 54 v~~~ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~-DLG~DSLD~VEIvm~LEeeFgI~i~ 114 (135)
-..+++++++++|++++++.+++++ ++|+++++|. |||+||||+|||+++||++|||.++
T Consensus 63 ~~~~~~~~v~~~l~eiiae~l~vd~-~~I~~ds~~~~dLg~DSLd~veLv~~LEdeFgI~Ip 123 (148)
T PTZ00171 63 QYLLSKEDVLTRVKKVVKNFEKVDA-SKITPESNFVKDLGADSLDVVELLIAIEQEFNLTIP 123 (148)
T ss_pred ccccCHHHHHHHHHHHHHHHhCCCH-hhCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCccC
Confidence 3456899999999999999999986 6999999997 9999999999999999999999974
No 15
>PRK00982 acpP acyl carrier protein; Provisional
Probab=99.21 E-value=4.1e-12 Score=85.37 Aligned_cols=69 Identities=32% Similarity=0.331 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCc-cccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCCCCCCc
Q 032705 60 PETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGKLPEHH 129 (135)
Q Consensus 60 ~ei~~~V~eII~e~l~l~~~~~It~dt~f-~DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~l~~~~ 129 (135)
.++.+.|++++++.+++++ ..++++++| .|+|+|||+.++|+..+|++|||+++ .++++-+-++|.++.
T Consensus 2 ~~i~~~l~~~l~~~l~~~~-~~i~~d~~l~~dlglDSl~~~~li~~le~~f~i~i~~~~~~~~~ti~~l~~~l 73 (78)
T PRK00982 2 SEIFEKVKKIIVEQLGVDE-EEVTPEASFVDDLGADSLDTVELVMALEEEFGIEIPDEDAEKIKTVGDAVDYI 73 (78)
T ss_pred hHHHHHHHHHHHHHHCCCH-HHCCCCcchHhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHcCcHHHHHHHH
Confidence 3688999999999999986 699999999 59999999999999999999999974 355555666665554
No 16
>PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups []. The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A ....
Probab=99.18 E-value=7.3e-12 Score=80.84 Aligned_cols=60 Identities=22% Similarity=0.315 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCC
Q 032705 64 QKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGK 124 (135)
Q Consensus 64 ~~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~ 124 (135)
++|++++++.++++. .+++++++|.++|+||++.++++..||++||+.++ .++++-+-++
T Consensus 1 e~l~~~~~~~l~~~~-~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~i~~~~~~~~~ti~~ 62 (67)
T PF00550_consen 1 EQLREIIAEVLGVDP-EEIDPDTDFFDLGLDSLDAIELVSELEEEFGIKIPPSDLFEHPTIRD 62 (67)
T ss_dssp HHHHHHHHHHHTSSG-GCTSTTSBTTTTTSSHHHHHHHHHHHHHHHTSSTTHHHHCTSSSHHH
T ss_pred CHHHHHHHHHHCcCH-hhCCCCCCHHHhCCchHHHHHHHHHHHHHHcCCCCHHHHHcCCCHHH
Confidence 579999999999876 69999999999999999999999999999999874 3545444333
No 17
>PRK07081 acyl carrier protein; Provisional
Probab=99.12 E-value=6.8e-11 Score=81.98 Aligned_cols=66 Identities=17% Similarity=0.177 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHcCCCC-CCCCCCCCCccccCCchhhHHHHHHHHHhhcCcchh--hhh--hHhhhCCCCCC
Q 032705 63 VQKVCEIVRRQLALPA-ETELTSESKFSALGADSLDTVHLTLLLSGNSDELRR--RIW--DWCRRGKLPEH 128 (135)
Q Consensus 63 ~~~V~eII~e~l~l~~-~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i~--~~~--~~~~~~~l~~~ 128 (135)
.++|++||.+.++++. .+.++++++|.|||+||+++++|++.||++|||+++ .++ .+-+-|+|.++
T Consensus 2 ~~~i~~ii~~~~~~~~~~~~i~~d~~l~dlGlDSl~~v~li~~lE~~f~I~i~~~~~~~~~~~tv~~l~~~ 72 (83)
T PRK07081 2 KNTIRTILKKVAKLEVPIDSIADDADLYEAGLSSLATVQLMLAIEDAFDIEIPDEMLNRKLFASIDALAGA 72 (83)
T ss_pred hHHHHHHHHHHHcCCCCHHhcCCCCCHhhcCCCHHHHHHHHHHHHHHhCCcCCHHHcCHHHhccHHHHHHH
Confidence 4789999999855532 258999999999999999999999999999999984 233 24555555443
No 18
>PRK05087 D-alanine--poly(phosphoribitol) ligase subunit 2; Validated
Probab=98.99 E-value=6.9e-10 Score=76.62 Aligned_cols=52 Identities=17% Similarity=0.093 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCCcccc-CCchhhHHHHHHHHHhhcCcch
Q 032705 61 ETVQKVCEIVRRQLALPAETELTSESKFSAL-GADSLDTVHLTLLLSGNSDELR 113 (135)
Q Consensus 61 ei~~~V~eII~e~l~l~~~~~It~dt~f~DL-G~DSLD~VEIvm~LEeeFgI~i 113 (135)
++.++|+++|.+.++.+. .+++++++|.+. ++|||++|||+++||++|||++
T Consensus 2 ~i~~~I~~iL~~~~~~~~-~~~~~d~~l~~~g~lDSl~~veli~~lE~~fgi~i 54 (78)
T PRK05087 2 DFKEQVLDILEELTGEDI-VSENMDEDLFEEGILDSMGTVELLVELENRFDIEV 54 (78)
T ss_pred cHHHHHHHHHHHHhCCCh-hccCCccchhhccCcchHHHHHHHHHHHHHhCCcc
Confidence 478999999999998875 588999999855 4899999999999999999997
No 19
>TIGR01688 dltC D-alanine--poly(phosphoribitol) ligase, subunit 2. This protein is part of the teichoic acid operon in gram-positive organisms. Gram positive organisms incorporate teichoic acid in their cell walls, and in the fatty acid residues of the glycolipid component of the outer layer of the cytoplasmic membrane. This gene, dltC, encodes the alanyl carrier protein.
Probab=98.63 E-value=3.4e-08 Score=67.94 Aligned_cols=49 Identities=20% Similarity=0.169 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCCccccCC-chhhHHHHHHHHHhhcCcch
Q 032705 64 QKVCEIVRRQLALPAETELTSESKFSALGA-DSLDTVHLTLLLSGNSDELR 113 (135)
Q Consensus 64 ~~V~eII~e~l~l~~~~~It~dt~f~DLG~-DSLD~VEIvm~LEeeFgI~i 113 (135)
++|++|+.+..+.+. ....++++|.+.|+ ||+++|+|+.+||++|||++
T Consensus 2 e~i~eIL~~i~~~~~-~~~~~d~~L~~~GllDS~~~v~Li~~lE~ef~I~i 51 (73)
T TIGR01688 2 NGVLDILAEVTGSDD-VKENPDLELFEEGLLDSFGTVQLLLEIQNQFDIDV 51 (73)
T ss_pred hHHHHHHHHHhcCcc-cccCccHHHHHccchhHHHHHHHHHHHHHHhCCcc
Confidence 678999999877653 35688999999996 99999999999999999997
No 20
>PF14573 PP-binding_2: Acyl-carrier; PDB: 3CE7_A.
Probab=98.27 E-value=1.4e-06 Score=62.71 Aligned_cols=52 Identities=25% Similarity=0.254 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCcc------ccCCchhhHHHHHHHHHhhcCcch
Q 032705 60 PETVQKVCEIVRRQLALPAETELTSESKFS------ALGADSLDTVHLTLLLSGNSDELR 113 (135)
Q Consensus 60 ~ei~~~V~eII~e~l~l~~~~~It~dt~f~------DLG~DSLD~VEIvm~LEeeFgI~i 113 (135)
..+.+++..++++.+.-. .++++.+++. ++.+||||+||+++.+|++|+|.+
T Consensus 9 nav~~~i~g~~kkyl~~~--~~it~~skL~e~rt~e~r~wD~LDtVefvldVEe~F~V~I 66 (96)
T PF14573_consen 9 NAVTEYILGMLKKYLSEG--EEITYTSKLEESRTKEDRAWDSLDTVEFVLDVEEEFDVTI 66 (96)
T ss_dssp HHHHHHHHHHHHTTB-TT------TTS-GGGSBBTTSSB--HHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHcCCC--CccChhhhhHHhccccccccchhhhHHHHHhHHHHcCccc
Confidence 357788999999988754 4888888872 788999999999999999999997
No 21
>smart00823 PKS_PP Phosphopantetheine attachment site. Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups PUBMED:5321311.
Probab=98.08 E-value=3.1e-06 Score=53.99 Aligned_cols=65 Identities=23% Similarity=0.215 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCC
Q 032705 60 PETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGK 124 (135)
Q Consensus 60 ~ei~~~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~ 124 (135)
..+.+.+..++.+.++......+..+.+|.++|+||+..+++...++++|++++. .+++..+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~dSl~~~~~~~~l~~~~~~~i~~~~~~~~~t~~~ 77 (86)
T smart00823 11 RLLLDLVREQVAAVLGHAAAEAIDPDRPFRDLGLDSLTAVELRNRLEAATGLRLPATLVFDHPTPAA 77 (86)
T ss_pred HHHHHHHHHHHHHHHCCCccccCCCCCCHHHcCchHHHHHHHHHHHHHHHCCCCChHHHHcCCCHHH
Confidence 3467788888888888765323588999999999999999999999999998873 4454444333
No 22
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=98.01 E-value=3.3e-06 Score=86.89 Aligned_cols=51 Identities=20% Similarity=0.232 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHhhcC
Q 032705 59 KPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSGNSD 110 (135)
Q Consensus 59 k~ei~~~V~eII~e~l~l~~~~~It~dt~f~-DLG~DSLD~VEIvm~LEeeFg 110 (135)
..++.++|.+++.++++++. +.++++++|. |||+||++.+||++.||++|+
T Consensus 1305 ~~~v~~~vl~vvae~tgyp~-e~L~~d~~le~DLGiDSI~~vEil~~le~~f~ 1356 (2582)
T TIGR02813 1305 LIQIQNVMLEVVADKTGYPT-EMLELEMDMEADLGIDSIKRVEILGTVQDTLP 1356 (2582)
T ss_pred HHHHHHHHHHHHHHHhCCCH-HHcCcccCchhhcCCCHHHHHHHHHHHHHhcC
Confidence 46899999999999999987 6999999997 999999999999999999998
No 23
>PRK06060 acyl-CoA synthetase; Validated
Probab=97.67 E-value=2.2e-05 Score=70.25 Aligned_cols=53 Identities=28% Similarity=0.280 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcch
Q 032705 61 ETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELR 113 (135)
Q Consensus 61 ei~~~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i 113 (135)
.+.+.|++++++.++++....|.++.+|.+||.|||..+++...|+++||+.+
T Consensus 545 ~~~~~v~~~~a~vl~~~~~~~i~~~~~f~~lG~dSl~av~l~~~l~~~~g~~l 597 (705)
T PRK06060 545 LVVDAVCAEAAKMLGEPDPWSVDQDLAFSELGFDSQMTVTLCKRLAAVTGLRL 597 (705)
T ss_pred HHHHHHHHHHHHHhCCCChhhCCCCCChhhcCchHHHHHHHHHHHHHHhCCCC
Confidence 35678899999999987546799999999999999999999999999999986
No 24
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=97.25 E-value=0.00019 Score=68.70 Aligned_cols=54 Identities=15% Similarity=0.181 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcch
Q 032705 59 KPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELR 113 (135)
Q Consensus 59 k~ei~~~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i 113 (135)
..++.+.|++++.+.++++. .+|+++.+|++||.|||..++++..|+++||+.+
T Consensus 846 ~~~~~~~l~~~~~~vl~~~~-~~i~~~~~ff~lGgdSL~a~~l~~~l~~~~~~~l 899 (1389)
T TIGR03443 846 FTETEREIRDLWLELLPNRP-ATISPDDSFFDLGGHSILATRMIFELRKKLNVEL 899 (1389)
T ss_pred CCHHHHHHHHHHHHHhCCCc-cccCcCcchhhcCccHHHHHHHHHHHHHHhCCCc
Confidence 35678899999999999864 5799999999999999999999999999999986
No 25
>PF07377 DUF1493: Protein of unknown function (DUF1493); InterPro: IPR010862 This family consists of several bacterial proteins of around 115 residues in length. Members of this family are largely found in Salmonella and Yersinia species and several have been described as being putative cytoplasmic proteins. The function of this family is unknown.
Probab=97.18 E-value=0.00097 Score=48.32 Aligned_cols=54 Identities=17% Similarity=0.160 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHcCCC---CCCCCCCCCCcc-ccCCchhhHHHHHHHHHhhcCcch
Q 032705 60 PETVQKVCEIVRRQLALP---AETELTSESKFS-ALGADSLDTVHLTLLLSGNSDELR 113 (135)
Q Consensus 60 ~ei~~~V~eII~e~l~l~---~~~~It~dt~f~-DLG~DSLD~VEIvm~LEeeFgI~i 113 (135)
+++.++|.+.|++..+.. ....|++++.+. |||++--|..|++....++|||.+
T Consensus 2 ~~i~~~I~~fi~~~~~~~~~~~~~~it~dt~L~~DL~~~~dda~elm~~f~~~F~Vd~ 59 (111)
T PF07377_consen 2 DDIEQEIIEFIREENGPYLFFKKKPITPDTDLQEDLGLDGDDAEELMEDFFERFNVDL 59 (111)
T ss_pred chHHHHHHHHHHHHcCcccccCcccCCCCCcHHHhcCCCHHHHHHHHHHHHHHhCCCc
Confidence 578899999999999873 236899999997 999999999999999999999997
No 26
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=97.07 E-value=0.00041 Score=65.48 Aligned_cols=53 Identities=23% Similarity=0.218 Sum_probs=48.2
Q ss_pred ChHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcch
Q 032705 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELR 113 (135)
Q Consensus 58 ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i 113 (135)
...++.+.|++++++.++++ .+..+++|++||.|||..++|+..|++.||+.+
T Consensus 975 ~~~~~e~~l~~~~~~~l~~~---~~~~~~~ff~lGg~Sl~a~~l~~~l~~~~~~~l 1027 (1296)
T PRK10252 975 PKTGTETIIAAAFSSLLGCD---VVDADADFFALGGHSLLAMKLAAQLSRQFARQV 1027 (1296)
T ss_pred CCCHHHHHHHHHHHHHhCCC---CCCCCcCHHHcCCChHHHHHHHHHHHHHhCCCC
Confidence 35577889999999999985 788999999999999999999999999999986
No 27
>PRK12467 peptide synthase; Provisional
Probab=96.81 E-value=0.00099 Score=70.72 Aligned_cols=66 Identities=18% Similarity=0.193 Sum_probs=54.1
Q ss_pred ChHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcch--hhhhhHhhhCCCC
Q 032705 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELR--RRIWDWCRRGKLP 126 (135)
Q Consensus 58 ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i--~~~~~~~~~~~l~ 126 (135)
...++.+.+++|+++.|+++ .|..+.+|++||.|||..+.|+..|+++||+++ ..+++.-+..+|+
T Consensus 3602 p~~~~e~~l~~i~~~vL~~~---~i~~~d~Ff~lGgdSl~a~~l~~~l~~~~g~~l~~~~lf~~pti~~la 3669 (3956)
T PRK12467 3602 PRSEVEQQLAAIWADVLGVE---QVGVTDNFFELGGDSLLALQVLSRIRQSLGLKLSLRDLMSAPTIAELA 3669 (3956)
T ss_pred CCCHHHHHHHHHHHHHhCCC---CCCCCcchhcccchHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHH
Confidence 45688899999999999984 688999999999999999999999999999996 2344444433333
No 28
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=96.64 E-value=0.0016 Score=67.88 Aligned_cols=52 Identities=21% Similarity=0.260 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHHHHHcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHhhcC
Q 032705 58 AKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSGNSD 110 (135)
Q Consensus 58 ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~-DLG~DSLD~VEIvm~LEeeFg 110 (135)
...++.+.+.++++++.+.+. +.+.+|..|. |||+||++.+||+..++++|+
T Consensus 1208 ~~~~~~~~~l~vvae~tgyp~-e~L~ld~d~eaDLgIDSIkrveil~~l~~~~~ 1260 (2582)
T TIGR02813 1208 NDSAIQQVMMEVVAEKTGYPT-EMLELEMDMEADLGIDSIKRVEILGSVQEIIN 1260 (2582)
T ss_pred chhHHHHHHHHHHHhhccCCh-HhcccccccccccCcchhhhHHhhhhhhhhcc
Confidence 456799999999999999987 6899999997 999999999999999999998
No 29
>PRK12467 peptide synthase; Provisional
Probab=96.42 E-value=0.0026 Score=67.71 Aligned_cols=69 Identities=13% Similarity=0.150 Sum_probs=56.7
Q ss_pred ChHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcch--hhhhhHhhhCCCCCCc
Q 032705 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELR--RRIWDWCRRGKLPEHH 129 (135)
Q Consensus 58 ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i--~~~~~~~~~~~l~~~~ 129 (135)
...++.+.+++|+++.|+++ .|..+.+|++||.|||..+.++..++++||+.+ ..+++.-+..+|+++.
T Consensus 1027 p~~~~e~~l~~i~~~vL~~~---~i~~~d~Ff~lGgdSl~a~~l~~~~~~~~g~~l~~~~lf~~~t~~~la~~~ 1097 (3956)
T PRK12467 1027 PQTELEKRLAAIWADVLKVE---RVGLTDNFFELGGHSLLATQVISRVRQRLGIQVPLRTLFEHQTLAGFAQAV 1097 (3956)
T ss_pred CCCHHHHHHHHHHHHHhCCC---CCCCCCCchhccCccHHHHHHHHHHHHHhCCCcchHHhhccchHHHHHHHh
Confidence 45678899999999999874 689999999999999999999999999999986 3466555555554443
No 30
>PRK05691 peptide synthase; Validated
Probab=96.24 E-value=0.0031 Score=67.45 Aligned_cols=66 Identities=17% Similarity=0.210 Sum_probs=54.3
Q ss_pred ChHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcch--hhhhhHhhhCCCC
Q 032705 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELR--RRIWDWCRRGKLP 126 (135)
Q Consensus 58 ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i--~~~~~~~~~~~l~ 126 (135)
.+.++..+|++|+.+.|+++ .|..+.+|++||.|||..+.++..+++.||+++ ..+++.-+..+|+
T Consensus 4238 p~~~~e~~l~~iw~~vL~~~---~i~~~d~Ff~lGg~Sl~a~~l~~~~~~~~~~~~~~~~~f~~~t~~~la 4305 (4334)
T PRK05691 4238 PRNELEQTLATIWADVLKVE---RVGVHDNFFELGGHSLLATQIASRVQKALQRNVPLRAMFECSTVEELA 4305 (4334)
T ss_pred CCCHHHHHHHHHHHHHhCCC---cCCCCCchhhcCCcHHHHHHHHHHHHHHhCCCccHHHHhcCCCHHHHH
Confidence 46789999999999999974 689999999999999999999999999999986 2444443333333
No 31
>PRK12316 peptide synthase; Provisional
Probab=96.09 E-value=0.0038 Score=67.73 Aligned_cols=66 Identities=20% Similarity=0.194 Sum_probs=53.5
Q ss_pred ChHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcch--hhhhhHhhhCCCC
Q 032705 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELR--RRIWDWCRRGKLP 126 (135)
Q Consensus 58 ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i--~~~~~~~~~~~l~ 126 (135)
...++..+|++++++.|+++ .|..+.+|++||.|||..+.|+..|+++||+++ ..+++.-+..+|+
T Consensus 5069 ~~~~~e~~l~~i~~~vL~~~---~i~~~~~Ff~lGgdSl~a~~l~~~l~~~~g~~l~~~~lf~~pti~~la 5136 (5163)
T PRK12316 5069 PRSELEQQVAAIWAEVLQLE---RVGLDDNFFELGGHSLLAIQVTSRIQLELGLELPLRELFQTPTLAAFV 5136 (5163)
T ss_pred CCcHHHHHHHHHHHHHhCCC---CCCCCCChhhccchHHHHHHHHHHHHHHcCCCCCHHHHHcCCCHHHHH
Confidence 45678899999999999874 688999999999999999999999999999986 2344443333333
No 32
>PRK05691 peptide synthase; Validated
Probab=96.04 E-value=0.0046 Score=66.17 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=48.0
Q ss_pred ChHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcch
Q 032705 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELR 113 (135)
Q Consensus 58 ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i 113 (135)
...++.++++++++++|+++ .|.++.+|.+||.|||..++|+..++++||+.+
T Consensus 583 ~~~~~e~~l~~~~~~vL~~~---~i~~~~~ff~lGgdSL~a~~l~~~l~~~~g~~l 635 (4334)
T PRK05691 583 SGDELQARIAAIWCEQLKVE---QVAADDHFFLLGGNSIAATQVVARLRDELGIDL 635 (4334)
T ss_pred CcchHHHHHHHHHHHHhCCC---CCCcCCchhhcccchHHHHHHHHHHHHHhCCcC
Confidence 34578889999999999973 789999999999999999999999999999886
No 33
>PRK12316 peptide synthase; Provisional
Probab=96.04 E-value=0.0066 Score=66.01 Aligned_cols=68 Identities=13% Similarity=0.157 Sum_probs=56.3
Q ss_pred ChHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcch--hhhhhHhhhCCCCCC
Q 032705 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELR--RRIWDWCRRGKLPEH 128 (135)
Q Consensus 58 ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i--~~~~~~~~~~~l~~~ 128 (135)
...++.+++++++++.|+++ .|..+.+|++||.|||..++|+..++++||+.+ ..+++.-+..+|+.+
T Consensus 2513 p~~~~e~~l~~iw~~vL~~~---~i~~~d~Ff~lGgdSl~a~~l~~~~~~~~g~~l~~~~~f~~~ti~~la~~ 2582 (5163)
T PRK12316 2513 PQEGLEQRLAAIWQAVLKVE---QVGLDDHFFELGGHSLLATQVVSRVRQDLGLEVPLRILFERPTLAAFAAS 2582 (5163)
T ss_pred CCCHHHHHHHHHHHHHhCCC---ccCCCCchhhhcchHHHHHHHHHHHHHHhCCCcCHHHHhhCccHHHHhhh
Confidence 45678899999999999984 688999999999999999999999999999997 345555555555544
No 34
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=95.88 E-value=0.0062 Score=60.64 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=44.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcch
Q 032705 65 KVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELR 113 (135)
Q Consensus 65 ~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i 113 (135)
.+.+.|+.++++.+-..|.+++++.|||+|||.-+||--.||++|++-+
T Consensus 2008 dLiatiA~IlGlrD~~~vn~~asLaDLGlDSLMsvEikQtLER~~dlVL 2056 (2376)
T KOG1202|consen 2008 DLIATIAHILGLRDLKAVNDDASLADLGLDSLMSVEIKQTLEREFDLVL 2056 (2376)
T ss_pred cHHHHHHHHhcchhHhhccCCCchhhccchhhhhHHHHHHHhhhhceee
Confidence 4566778889997667899999999999999999999999999999986
No 35
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.41 E-value=0.083 Score=36.71 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=33.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhh
Q 032705 66 VCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGN 108 (135)
Q Consensus 66 V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEee 108 (135)
+++.+.+.++..+ ++++++.++.+.|+||+-+|-++-...++
T Consensus 3 Lr~~~~~Ll~e~~-~~l~dqeNLi~~GLDSiR~M~L~~~wR~~ 44 (74)
T COG3433 3 LREQIAELLGESV-EELDDQENLIDYGLDSIRMMALLERWRKR 44 (74)
T ss_pred HHHHHHHHHcCCh-hhcCchhhHHHhchhHHHHHHHHHHHHHc
Confidence 4456666666655 68999999999999999998888777543
No 36
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=92.04 E-value=0.37 Score=41.26 Aligned_cols=56 Identities=16% Similarity=0.148 Sum_probs=44.0
Q ss_pred ChHHHHHHHHHHHHHHcCCCC--------CCCCCCCCCcc--ccCCchhhHHHHHHHHHhhcCcch
Q 032705 58 AKPETVQKVCEIVRRQLALPA--------ETELTSESKFS--ALGADSLDTVHLTLLLSGNSDELR 113 (135)
Q Consensus 58 ak~ei~~~V~eII~e~l~l~~--------~~~It~dt~f~--DLG~DSLD~VEIvm~LEeeFgI~i 113 (135)
..+.+...+..+|...+.-.. ...++.|+.+. ++|+|||+.++|+.++-+-|++.-
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (386)
T TIGR02372 4 DAEAVGRLLVSLIAAEQQEGRVQHHQMPEARLLTADLRIDEETLGLDSLLRLSLVTAVAGFFHLSD 69 (386)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCcccCchhhhcccccccccccccccHHHHHHHHHHHHHHhcccc
Confidence 456788888888887663321 12488888884 899999999999999999999953
No 37
>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.
Probab=73.54 E-value=5.3 Score=22.86 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=22.6
Q ss_pred HHHhhcCcchhhhhhHhhhCCCCCCcC
Q 032705 104 LLSGNSDELRRRIWDWCRRGKLPEHHN 130 (135)
Q Consensus 104 ~LEeeFgI~i~~~~~~~~~~~l~~~~~ 130 (135)
.+-+.+||...-++.|++.|++|....
T Consensus 5 e~a~~lgvs~~tl~~~~~~g~~~~~~~ 31 (49)
T cd04762 5 EAAELLGVSPSTLRRWVKEGKLKAIRT 31 (49)
T ss_pred HHHHHHCcCHHHHHHHHHcCCCCceeC
Confidence 466789999999999999999986544
No 38
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=66.62 E-value=6.2 Score=22.78 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=23.5
Q ss_pred HHHhhcCcchhhhhhHhhhCCCCCCcCC
Q 032705 104 LLSGNSDELRRRIWDWCRRGKLPEHHNG 131 (135)
Q Consensus 104 ~LEeeFgI~i~~~~~~~~~~~l~~~~~~ 131 (135)
.+-+.+||....+..|++.|++|....|
T Consensus 6 e~a~~lgis~~ti~~~~~~g~i~~~~~g 33 (49)
T TIGR01764 6 EAAEYLGVSKDTVYRLIHEGELPAYRVG 33 (49)
T ss_pred HHHHHHCCCHHHHHHHHHcCCCCeEEeC
Confidence 4568899999999999999999976543
No 39
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=62.99 E-value=13 Score=21.79 Aligned_cols=26 Identities=15% Similarity=-0.004 Sum_probs=22.2
Q ss_pred HHHHhhcCcchhhhhhHhhhCCCCCC
Q 032705 103 LLLSGNSDELRRRIWDWCRRGKLPEH 128 (135)
Q Consensus 103 m~LEeeFgI~i~~~~~~~~~~~l~~~ 128 (135)
..+.+.+||..+-+..|++.|.|+-.
T Consensus 4 ~e~a~~~gv~~~tlr~~~~~g~l~~~ 29 (49)
T cd04761 4 GELAKLTGVSPSTLRYYERIGLLSPA 29 (49)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCC
Confidence 45778999999999999999999843
No 40
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=52.69 E-value=18 Score=22.74 Aligned_cols=28 Identities=7% Similarity=-0.064 Sum_probs=17.1
Q ss_pred CCchhhHHHHHHHHHhhcCcchhhhhhH
Q 032705 92 GADSLDTVHLTLLLSGNSDELRRRIWDW 119 (135)
Q Consensus 92 G~DSLD~VEIvm~LEeeFgI~i~~~~~~ 119 (135)
+++++..=.+...||++||+++...-++
T Consensus 17 dl~~vT~k~vr~~Le~~~~~dL~~~K~~ 44 (54)
T PF08766_consen 17 DLDTVTKKQVREQLEERFGVDLSSRKKF 44 (54)
T ss_dssp -GGG--HHHHHHHHHHH-SS--SHHHHH
T ss_pred CHhHhhHHHHHHHHHHHHCCCcHHHHHH
Confidence 3677788899999999999998543333
No 41
>COG1669 Predicted nucleotidyltransferases [General function prediction only]
Probab=43.94 E-value=71 Score=23.15 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHcCCCCC--------CCCCCCCCc---c--ccCCchhhHHHHHHHHHhhcCcch
Q 032705 60 PETVQKVCEIVRRQLALPAE--------TELTSESKF---S--ALGADSLDTVHLTLLLSGNSDELR 113 (135)
Q Consensus 60 ~ei~~~V~eII~e~l~l~~~--------~~It~dt~f---~--DLG~DSLD~VEIvm~LEeeFgI~i 113 (135)
.++..++...+++..++..- .+-++++.+ + .=|..-++++++...|++-||+++
T Consensus 8 ~~~lr~~~~~l~~k~gv~~~~vFGS~aRgE~~~~SDIDILVef~~~~~ll~~~~l~~~L~~llg~~V 74 (97)
T COG1669 8 KKILRKIKPELKEKYGVKRVAVFGSYARGEQKPDSDIDILVEFEPGKTLLDLVRLEDELSDLLGRKV 74 (97)
T ss_pred HHHHHHHHHHHHHHhCCceEEEeeeeecCCCCCCCCceeEEeecCCccHHHHHHHHHHHHHHhCCee
Confidence 34577888888877765431 244555554 2 335789999999999999999997
No 42
>smart00422 HTH_MERR helix_turn_helix, mercury resistance.
Probab=43.20 E-value=39 Score=21.13 Aligned_cols=32 Identities=19% Similarity=0.103 Sum_probs=24.2
Q ss_pred HHHHhhcCcchhhhhhHhhhCCCCCCcCCCCC
Q 032705 103 LLLSGNSDELRRRIWDWCRRGKLPEHHNGPRG 134 (135)
Q Consensus 103 m~LEeeFgI~i~~~~~~~~~~~l~~~~~~~~~ 134 (135)
-.+.+.+||+.+.+..|++.|.++.....+.|
T Consensus 4 ~eva~~~gvs~~tlr~~~~~gli~~~~~~~~g 35 (70)
T smart00422 4 GEVAKLAGVSVRTLRYYERIGLLPPPIRTEGG 35 (70)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCccCCCC
Confidence 35678899999999999999999865333333
No 43
>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=43.16 E-value=22 Score=35.25 Aligned_cols=34 Identities=29% Similarity=0.364 Sum_probs=30.9
Q ss_pred CCCCCCCCccccCCchhhHHHHHHHHHhhcCcch
Q 032705 80 TELTSESKFSALGADSLDTVHLTLLLSGNSDELR 113 (135)
Q Consensus 80 ~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i 113 (135)
+.+.++++|++||.||+..+-++-.|..++.+..
T Consensus 614 ~~~s~d~~fF~lGgdSi~av~~~~~lr~~~~v~~ 647 (1032)
T KOG1178|consen 614 AIVSPDSSFFQLGGDSISAVRLSGLLRKKGYVEG 647 (1032)
T ss_pred cccCCCcchhhhcchhHHHHHHHHhhhhhheecc
Confidence 3678999999999999999999999999988874
No 44
>PF12728 HTH_17: Helix-turn-helix domain
Probab=40.52 E-value=30 Score=20.76 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=21.9
Q ss_pred HHHhhcCcchhhhhhHhhhCCCCCCc
Q 032705 104 LLSGNSDELRRRIWDWCRRGKLPEHH 129 (135)
Q Consensus 104 ~LEeeFgI~i~~~~~~~~~~~l~~~~ 129 (135)
.+-+.+||....+..|++.|++|...
T Consensus 6 e~a~~l~is~~tv~~~~~~g~i~~~~ 31 (51)
T PF12728_consen 6 EAAELLGISRSTVYRWIRQGKIPPFK 31 (51)
T ss_pred HHHHHHCcCHHHHHHHHHcCCCCeEE
Confidence 45677899998999999999998664
No 45
>PRK00157 rplL 50S ribosomal protein L7/L12; Reviewed
Probab=39.09 E-value=25 Score=26.45 Aligned_cols=22 Identities=14% Similarity=0.004 Sum_probs=18.2
Q ss_pred CchhhHHHHHHHHHhhcCcchh
Q 032705 93 ADSLDTVHLTLLLSGNSDELRR 114 (135)
Q Consensus 93 ~DSLD~VEIvm~LEeeFgI~i~ 114 (135)
+.=|.+.||+-.||++|||+..
T Consensus 15 LtllE~~eLv~~lee~fgv~a~ 36 (123)
T PRK00157 15 MTVLELSELVKALEEKFGVSAA 36 (123)
T ss_pred CCHHHHHHHHHHHHHHcCCCcc
Confidence 3346788999999999999964
No 46
>PF11198 DUF2857: Protein of unknown function (DUF2857); InterPro: IPR021364 This is a bacterial family of uncharacterised proteins.
Probab=37.85 E-value=39 Score=26.44 Aligned_cols=29 Identities=28% Similarity=0.452 Sum_probs=26.0
Q ss_pred CchhhHHHHHHHHHhhcCcchhhhhhHhh
Q 032705 93 ADSLDTVHLTLLLSGNSDELRRRIWDWCR 121 (135)
Q Consensus 93 ~DSLD~VEIvm~LEeeFgI~i~~~~~~~~ 121 (135)
.||.+.+|+.|.+-|+.+|++..+|..++
T Consensus 147 ~~~~~~Le~~m~~Ae~~~isL~~iW~~i~ 175 (180)
T PF11198_consen 147 LDSPDALELMMLLAEETNISLTVIWSLIQ 175 (180)
T ss_pred ccchHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 68999999999999999999988886654
No 47
>PF13592 HTH_33: Winged helix-turn helix
Probab=37.73 E-value=59 Score=20.59 Aligned_cols=30 Identities=3% Similarity=0.025 Sum_probs=23.1
Q ss_pred hHHHHHHHHHhhcCcch--hhhhhHhhhCCCC
Q 032705 97 DTVHLTLLLSGNSDELR--RRIWDWCRRGKLP 126 (135)
Q Consensus 97 D~VEIvm~LEeeFgI~i--~~~~~~~~~~~l~ 126 (135)
.+-+|...|+++|||.. +.++.+..+-.++
T Consensus 6 t~~~i~~~I~~~fgv~ys~~~v~~lL~r~G~s 37 (60)
T PF13592_consen 6 TLKEIAAYIEEEFGVKYSPSGVYRLLKRLGFS 37 (60)
T ss_pred cHHHHHHHHHHHHCCEEcHHHHHHHHHHcCCc
Confidence 35688899999999997 3577777766655
No 48
>TIGR00855 L12 ribosomal protein L7/L12. THis model resembles Pfam model pfam00542 but matches the full length of prokaryotic and organellar proteins rather than just the C-terminus.
Probab=37.38 E-value=28 Score=26.36 Aligned_cols=23 Identities=13% Similarity=-0.005 Sum_probs=18.8
Q ss_pred CchhhHHHHHHHHHhhcCcchhh
Q 032705 93 ADSLDTVHLTLLLSGNSDELRRR 115 (135)
Q Consensus 93 ~DSLD~VEIvm~LEeeFgI~i~~ 115 (135)
+.=|.+.||+-.||++|||+...
T Consensus 16 LTllE~~eLv~~lee~fgV~a~a 38 (126)
T TIGR00855 16 MTVLELSELVKALEEKFGVSAAA 38 (126)
T ss_pred CCHHHHHHHHHHHHHhcCCCccc
Confidence 34467889999999999999743
No 49
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=37.03 E-value=46 Score=31.23 Aligned_cols=49 Identities=27% Similarity=0.256 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcC
Q 032705 60 PETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSD 110 (135)
Q Consensus 60 ~ei~~~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFg 110 (135)
.-+.++|+.+...+|.-- .++..++.|+.-|+.|.|++.||-.+.+--|
T Consensus 321 ~~t~~~~~~iw~~il~kv--~~v~~~tdff~sga~s~dv~rlveeik~~~~ 369 (881)
T KOG2452|consen 321 LVTAEAVRSVWQRILPKV--LEVEDSTDFFKSGAASVDVVRLVEEVKELCD 369 (881)
T ss_pred HHHHHHHHHHHHHhcchh--eeecccchHhhcCccchhHHHHHHHHHHhCC
Confidence 347889999998888642 4788999999999999999999988877666
No 50
>COG0222 RplL Ribosomal protein L7/L12 [Translation, ribosomal structure and biogenesis]
Probab=34.71 E-value=32 Score=26.14 Aligned_cols=18 Identities=17% Similarity=0.062 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHhhcCcch
Q 032705 96 LDTVHLTLLLSGNSDELR 113 (135)
Q Consensus 96 LD~VEIvm~LEeeFgI~i 113 (135)
|.+.||+-++||+|||.-
T Consensus 18 lel~eLvk~~eekfgVsa 35 (124)
T COG0222 18 LELSELVKALEEKFGVTA 35 (124)
T ss_pred HHHHHHHHHHHHHhCCcc
Confidence 567899999999999995
No 51
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=30.63 E-value=73 Score=22.05 Aligned_cols=31 Identities=13% Similarity=0.084 Sum_probs=24.5
Q ss_pred HHHhhcCcchhhhhhHhhhCCCCCCcCCCCC
Q 032705 104 LLSGNSDELRRRIWDWCRRGKLPEHHNGPRG 134 (135)
Q Consensus 104 ~LEeeFgI~i~~~~~~~~~~~l~~~~~~~~~ 134 (135)
.+.+.+||+.+-+.-|.+.|.++....++.|
T Consensus 5 eva~~~gvs~~tlR~ye~~Gll~~~~~~~~g 35 (103)
T cd01106 5 EVAKLTGVSVRTLHYYDEIGLLKPSRRTENG 35 (103)
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCCccCCCC
Confidence 5678999999888899999999765555544
No 52
>CHL00083 rpl12 ribosomal protein L12
Probab=30.18 E-value=43 Score=25.47 Aligned_cols=21 Identities=10% Similarity=-0.008 Sum_probs=17.8
Q ss_pred chhhHHHHHHHHHhhcCcchh
Q 032705 94 DSLDTVHLTLLLSGNSDELRR 114 (135)
Q Consensus 94 DSLD~VEIvm~LEeeFgI~i~ 114 (135)
.=|.+.||+-.||++|||+..
T Consensus 16 TllE~~eLv~~le~~fgv~~~ 36 (131)
T CHL00083 16 TLLEAAELVKQIEETFGVDAS 36 (131)
T ss_pred CHHHHHHHHHHHHHHcCCCcc
Confidence 336788999999999999874
No 53
>PF05930 Phage_AlpA: Prophage CP4-57 regulatory protein (AlpA); InterPro: IPR010260 This entry is represents phage P4, Orf88. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. In Escherichia coli phage P4 Orf 88 is similar to AlpA of the CP4-57 cryptic prophage []. AlpA acts as a positive transcriptional regulator of slpA, a gene linked to alpA and necessary for suppression of lon mutants [, ]. The sequence of slpA suggests that it encodes an integrase gene closely related to phage P4 int and that both alpA and slpA are part of a cryptic P4-like prophage. Increase in alpA expression increases SlpA synthesis. Increased SlpA leads, in turn, to the excision and loss of the cryptic prophage. ; PDB: 1Z4H_A.
Probab=27.55 E-value=27 Score=21.49 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=18.8
Q ss_pred HHHhhcCcchhhhhhHhhhCCCCCCc
Q 032705 104 LLSGNSDELRRRIWDWCRRGKLPEHH 129 (135)
Q Consensus 104 ~LEeeFgI~i~~~~~~~~~~~l~~~~ 129 (135)
.+.+.+|+...-++.+++.|++|.-+
T Consensus 8 ev~~~~g~s~~ti~~~~k~g~FP~pv 33 (51)
T PF05930_consen 8 EVAELLGVSRSTIYRLIKDGKFPKPV 33 (51)
T ss_dssp HHHHHHSS-HHHHHHHHHHHH---SE
T ss_pred HHHHHHCCCHHHHHHHHhcccCCCCE
Confidence 56788899988999999999999764
No 54
>cd01104 HTH_MlrA-CarA Helix-Turn-Helix DNA binding domain of the transcription regulators MlrA and CarA. Helix-turn-helix (HTH) transcription regulator MlrA (merR-like regulator A), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. Its close homolog, CarA from Myxococcus xanthus, is involved in activation of the carotenoid biosynthesis genes by light. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA- and CarA-like proteins in this group appear to lack the long dimerization helix seen i
Probab=25.80 E-value=1.1e+02 Score=18.92 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=21.5
Q ss_pred HHHHhhcCcchhhhhhHhhhCCCCCCcCCCCC
Q 032705 103 LLLSGNSDELRRRIWDWCRRGKLPEHHNGPRG 134 (135)
Q Consensus 103 m~LEeeFgI~i~~~~~~~~~~~l~~~~~~~~~ 134 (135)
-.+-+.+||..+-+..|.+.+.+..-...|.|
T Consensus 4 ~eva~~~gvs~~tlr~w~~~~g~~~~~r~~~~ 35 (68)
T cd01104 4 GAVARLTGVSPDTLRAWERRYGLPAPQRTDGG 35 (68)
T ss_pred HHHHHHHCcCHHHHHHHHHhCCCCCCCcCCCC
Confidence 35678999999888889886555443333433
No 55
>PF13411 MerR_1: MerR HTH family regulatory protein; PDB: 2JML_A 3GP4_A 3GPV_B.
Probab=23.82 E-value=1.2e+02 Score=18.85 Aligned_cols=27 Identities=15% Similarity=0.080 Sum_probs=23.1
Q ss_pred HHHHhhcCcchhhhhhHhhhCCCCCCc
Q 032705 103 LLLSGNSDELRRRIWDWCRRGKLPEHH 129 (135)
Q Consensus 103 m~LEeeFgI~i~~~~~~~~~~~l~~~~ 129 (135)
-.+.+.+||+.+.+--|.+.|.|+...
T Consensus 4 ~eva~~~gvs~~tlr~y~~~gll~~~~ 30 (69)
T PF13411_consen 4 KEVAKLLGVSPSTLRYYEREGLLPPPR 30 (69)
T ss_dssp HHHHHHTTTTHHHHHHHHHTTSSTTBE
T ss_pred HHHHHHHCcCHHHHHHHHHhcCccccc
Confidence 457889999999899999999988666
No 56
>cd04772 HTH_TioE_rpt1 First Helix-Turn-Helix DNA binding domain of the regulatory protein TioE. Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD contains the N-terminal or first repeat (rpt1) of these tandem MerR-like domain proteins.
Probab=23.76 E-value=1.2e+02 Score=21.13 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=25.0
Q ss_pred HHHhhcCcchhhhhhHhhhCCCCCCcCCCCC
Q 032705 104 LLSGNSDELRRRIWDWCRRGKLPEHHNGPRG 134 (135)
Q Consensus 104 ~LEeeFgI~i~~~~~~~~~~~l~~~~~~~~~ 134 (135)
.+-+.+||+.+-+.-|.+.|-||.....+.|
T Consensus 5 e~A~~~gvs~~tlR~Ye~~Gll~~~~r~~~g 35 (99)
T cd04772 5 DLARAIGLSPQTVRNYESLGLIPPAERTANG 35 (99)
T ss_pred HHHHHHCcCHHHHHHHHHcCCCCCCCcCCCC
Confidence 5678999999989999999999875555555
No 57
>cd00387 Ribosomal_L7_L12 Ribosomal protein L7/L12. Ribosomal protein L7/L12 refers to the large ribosomal subunit proteins L7 and L12, which are identical except that L7 is acetylated at the N terminus. It is a component of the L7/L12 stalk, which is located at the surface of the ribosome. The stalk base consists of a portion of the 23S rRNA and ribosomal proteins L11 and L10. An extended C-terminal helix of L10 provides the binding site for L7/L12. L7/L12 consists of two domains joined by a flexible hinge, with the helical N-terminal domain (NTD) forming pairs of homodimers that bind to the extended helix of L10. It is the only multimeric ribosomal component, with either four or six copies per ribosome that occur as two or three dimers bound to the L10 helix. L7/L12 is the only ribosomal protein that does not interact directly with rRNA, but instead has indirect interactions through L10. The globular C-terminal domains of L7/L12 are highly mobile. They are exposed to the cytoplasm and
Probab=23.18 E-value=68 Score=24.09 Aligned_cols=21 Identities=14% Similarity=0.052 Sum_probs=17.8
Q ss_pred chhhHHHHHHHHHhhcCcchh
Q 032705 94 DSLDTVHLTLLLSGNSDELRR 114 (135)
Q Consensus 94 DSLD~VEIvm~LEeeFgI~i~ 114 (135)
.=+++.||+-.||++|||+..
T Consensus 14 tllE~~eLv~~le~~~gv~~~ 34 (127)
T cd00387 14 TLLEAAELVKALEEKFGVSAS 34 (127)
T ss_pred CHHHHHHHHHHHHHHhCCCcc
Confidence 346788999999999999963
No 58
>cd00592 HTH_MerR-like Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=22.23 E-value=1.2e+02 Score=20.46 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=22.1
Q ss_pred HHHhhcCcchhhhhhHhhhCCCCCCcC
Q 032705 104 LLSGNSDELRRRIWDWCRRGKLPEHHN 130 (135)
Q Consensus 104 ~LEeeFgI~i~~~~~~~~~~~l~~~~~ 130 (135)
.+.+.+||+.+.+..|.+.|-|+-..+
T Consensus 5 eva~~~gi~~~tlr~~~~~Gll~~~~~ 31 (100)
T cd00592 5 EVAKLLGVSVRTLRYYEEKGLLPPERS 31 (100)
T ss_pred HHHHHHCcCHHHHHHHHHCCCcCCCcC
Confidence 567889999999999999999984443
No 59
>cd04763 HTH_MlrA-like Helix-Turn-Helix DNA binding domain of MlrA-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MlrA (merR-like regulator A) and related proteins, N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. Its close homolog, CarA from Myxococcus xanthus, is involved in activation of the carotenoid biosynthesis genes by light. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA-like proteins in this group appear to lack the long dimerization helix seen
Probab=22.12 E-value=1.5e+02 Score=18.72 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=21.2
Q ss_pred HHHhhcCcchhhhhhHhhhCCCCCCcCCCCC
Q 032705 104 LLSGNSDELRRRIWDWCRRGKLPEHHNGPRG 134 (135)
Q Consensus 104 ~LEeeFgI~i~~~~~~~~~~~l~~~~~~~~~ 134 (135)
.+.+.+||....+-.|++.+.|+.-...+.|
T Consensus 5 e~A~~~gVs~~tlr~ye~~~gl~~~~r~~~g 35 (68)
T cd04763 5 EVALLTGIKPHVLRAWEREFGLLKPQRSDGG 35 (68)
T ss_pred HHHHHHCcCHHHHHHHHHhcCCCCCCcCCCC
Confidence 4678899999888899886445433334444
No 60
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=20.79 E-value=12 Score=25.44 Aligned_cols=46 Identities=15% Similarity=0.286 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHHHHHHcCCCCC--------CCCCCCCCccccCCchhhHHHHHH
Q 032705 58 AKPETVQKVCEIVRRQLALPAE--------TELTSESKFSALGADSLDTVHLTL 103 (135)
Q Consensus 58 ak~ei~~~V~eII~e~l~l~~~--------~~It~dt~f~DLG~DSLD~VEIvm 103 (135)
.+.+.+.+|.+.+++..+++.. ..|.++..+.+||+..-|++++++
T Consensus 29 ~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l 82 (87)
T cd01763 29 KRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVML 82 (87)
T ss_pred cCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEE
Confidence 5667888888989888888652 456777777788887777666543
Done!