Query         032705
Match_columns 135
No_of_seqs    201 out of 1252
Neff          4.9 
Searched_HMMs 29240
Date          Mon Mar 25 07:28:35 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032705.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032705hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2l9f_A CALE8, meacp; transfera  99.5 8.2E-15 2.8E-19  105.5   6.0   56   57-113    10-66  (102)
  2 2kci_A Putative acyl carrier p  99.5 1.9E-14 6.5E-19   99.8   2.8   52   61-113     2-54  (87)
  3 2dnw_A Acyl carrier protein; A  99.5 2.3E-13 7.8E-18   94.2   8.1   79   54-134     8-98  (99)
  4 1f80_D Acyl carrier protein; t  99.4 3.1E-14   1E-18   94.0   2.5   72   57-129     3-77  (81)
  5 2ava_A ACP I, acyl carrier pro  99.4 3.7E-14 1.3E-18   93.9   2.3   57   58-114     1-57  (82)
  6 3gzm_A Acyl carrier protein; h  99.4 2.6E-14 9.1E-19   95.0   1.6   70   58-128     2-74  (81)
  7 3ejb_A Acyl carrier protein; p  99.4 3.8E-14 1.3E-18   98.8   2.3   70   57-127    18-90  (97)
  8 2lol_A ACP, acyl carrier prote  99.4 7.4E-14 2.5E-18   92.1   3.0   69   57-126     2-73  (81)
  9 2lte_A Specialized acyl carrie  99.1   2E-14 6.9E-19  101.7   0.0   81   50-131    13-97  (103)
 10 4dxe_H ACP, acyl carrier prote  99.4 4.2E-14 1.4E-18   99.9   1.5   71   57-128    22-95  (101)
 11 2kwl_A ACP, acyl carrier prote  99.4 5.6E-14 1.9E-18   93.7   1.9   69   57-126     5-76  (84)
 12 1vku_A Acyl carrier protein; T  99.4 9.5E-14 3.3E-18   97.9   2.5   69   56-125    12-82  (100)
 13 2cnr_A FAS, ACP, acyl carrier   99.4   2E-13 6.9E-18   89.8   3.8   69   57-126     3-74  (82)
 14 1dv5_A APO-DCP, APO-D-alanyl c  99.4 5.8E-13   2E-17   89.1   6.0   56   58-114     1-57  (80)
 15 1x3o_A Acyl carrier protein; s  99.4 1.5E-13 5.2E-18   89.8   2.8   69   57-126     1-72  (80)
 16 2kw2_A Specialized acyl carrie  99.4 9.8E-14 3.3E-18   97.0   2.0   53   61-114     3-56  (101)
 17 2qnw_A Acyl carrier protein; m  99.4 8.5E-14 2.9E-18   92.6   1.5   67   58-125     4-73  (82)
 18 2kjs_A Putative acyl carrier p  99.4 9.3E-14 3.2E-18   95.9   1.7   64   62-126     3-69  (87)
 19 2l4b_A Acyl carrier protein; i  99.4 4.8E-14 1.6E-18   95.1  -0.2   69   57-126     4-78  (88)
 20 2lki_A Putative uncharacterize  99.4 4.7E-13 1.6E-17   95.2   4.6   63   51-114    14-80  (105)
 21 1af8_A Actinorhodin polyketide  99.4 6.9E-14 2.4E-18   93.6   0.1   68   58-125     2-74  (86)
 22 1klp_A ACP, ACPM, meromycolate  99.3 5.9E-13   2E-17   94.7   3.1   56   57-113     3-59  (115)
 23 1l0i_A Acyl carrier protein; a  99.3   2E-13   7E-18   89.4   0.5   67   60-127     2-71  (78)
 24 2jq4_A AGR_C_4658P, hypothetic  99.3 1.5E-12 5.2E-17   92.1   4.6   59   56-114    17-76  (105)
 25 1or5_A Acyl carrier protein; A  99.3 4.6E-13 1.6E-17   89.0   0.4   70   60-129     3-76  (83)
 26 1fh1_A NODF, nodulation protei  99.3 4.3E-13 1.5E-17   91.9   0.2   72   60-131     3-86  (92)
 27 3ce7_A Specific mitochodrial a  99.3 7.9E-12 2.7E-16   88.8   6.2   56   57-114    15-76  (107)
 28 2l3v_A ACP, acyl carrier prote  99.3 3.9E-13 1.3E-17   88.0  -0.7   69   60-129     3-74  (79)
 29 2amw_A Hypothetical protein NE  99.2 5.3E-12 1.8E-16   84.3   4.6   53   61-114     2-58  (83)
 30 2cgq_A Acyl carrier protein AC  99.2 1.3E-11 4.4E-16   89.2   5.7   49   59-113    28-77  (113)
 31 1nq4_A Oxytetracycline polyket  99.2 1.9E-12 6.4E-17   89.6   0.8   53   62-114     5-60  (95)
 32 2ehs_A ACP, acyl carrier prote  99.2 2.5E-12 8.7E-17   83.2   1.4   52   62-114     2-54  (77)
 33 2cg5_B Fatty acid synthase; tr  99.1 6.7E-11 2.3E-15   82.9   5.0   51   64-114     9-59  (91)
 34 2kr5_A PKS, aflatoxin biosynth  99.1 1.4E-11 4.7E-16   82.2   1.0   70   58-128     8-81  (89)
 35 2afd_A Protein ASL1650; twiste  99.1 4.3E-11 1.5E-15   78.9   2.5   66   57-123    10-77  (88)
 36 2liu_A CURA; holo state, trans  99.1 5.2E-11 1.8E-15   80.3   2.6   68   57-125    17-86  (99)
 37 2l22_A Mupirocin didomain acyl  99.0 1.2E-10 4.2E-15   89.3   2.2   56   57-113    22-77  (212)
 38 2ju1_A Erythronolide synthase;  99.0 1.2E-10 3.9E-15   78.5   1.5   68   59-127    18-88  (95)
 39 4i4d_A Peptide synthetase NRPS  98.9 8.9E-10   3E-14   75.1   3.2   65   59-126    14-80  (93)
 40 1dny_A Non-ribosomal peptide s  98.8 1.1E-09 3.7E-14   74.8   2.6   54   57-113    10-63  (91)
 41 2l22_A Mupirocin didomain acyl  98.8 3.3E-09 1.1E-13   81.3   3.4   68   58-126   127-196 (212)
 42 2cq8_A 10-formyltetrahydrofola  98.3 1.4E-07 4.8E-12   68.1   1.0   53   58-113    22-76  (110)
 43 3tej_A Enterobactin synthase c  98.3 2.4E-07 8.3E-12   73.8   2.2   53   58-113     8-60  (329)
 44 2jgp_A Tyrocidine synthetase 3  97.9 5.3E-06 1.8E-10   69.2   2.6   54   57-113     6-59  (520)
 45 4f6l_B AUSA reductase domain p  97.5 1.4E-05 4.8E-10   67.4   0.0   70   58-131    42-113 (508)
 46 2fq1_A Isochorismatase; ENTB,   97.3 0.00023 7.9E-09   56.9   4.9   47   64-113   218-264 (287)
 47 4dg8_A PA1221; ANL superfamily  97.2 5.3E-05 1.8E-09   66.0   0.0   71   58-131   521-594 (620)
 48 2vsq_A Surfactin synthetase su  97.1 0.00043 1.5E-08   65.0   4.9   54   57-113   968-1021(1304)
 49 3rg2_A Enterobactin synthase c  96.5 0.00096 3.3E-08   57.4   2.0   62   61-125   545-608 (617)
 50 2vz8_A Fatty acid synthase; tr  96.4  0.0005 1.7E-08   69.4   0.0   66   62-128  2124-2191(2512)
 51 1dd4_C 50S ribosomal protein L  87.2    0.37 1.3E-05   28.8   2.3   21   93-113    13-33  (40)
 52 1zav_U 50S ribosomal protein L  79.2     1.2 4.2E-05   24.9   2.1   17   94-110    14-30  (30)
 53 3zen_D Fatty acid synthase; tr  71.0    0.85 2.9E-05   47.7   0.0   51   61-112  1794-1845(3089)
 54 2zjq_5 50S ribosomal protein L  43.0      13 0.00044   27.0   2.2   21   93-113    15-35  (122)
 55 1z4h_A TORI, TOR inhibition pr  42.9      11 0.00037   23.3   1.6   24  104-127    15-38  (66)
 56 2j01_L 50S ribosomal protein L  42.7      13 0.00045   27.1   2.2   21   93-113    15-35  (125)
 57 1dd3_A 50S ribosomal protein L  37.8      13 0.00046   27.2   1.6   21   93-113    13-33  (128)
 58 2ftc_E L12MT, MRP-L12, 39S rib  36.9      18  0.0006   26.7   2.1   21   94-114    14-34  (137)
 59 3sgf_J 50S ribosomal protein L  29.4     9.7 0.00033   27.7  -0.4   21   93-113    15-35  (121)
 60 3b1l_X E3 ubiquitin-protein li  34.2      12 0.00042   22.8   0.0   47   59-105    19-73  (76)
 61 2hfk_A Pikromycin, type I poly  27.4     4.6 0.00016   31.1  -2.6   43   57-112    24-66  (319)
 62 3u5e_m 60S ribosomal protein L  27.2      13 0.00045   25.8   0.0   49   59-107    19-75  (128)
 63 3m20_A 4-oxalocrotonate tautom  25.1      72  0.0024   18.9   3.2   21   58-78     14-34  (62)
 64 3u5c_f 40S ribosomal protein S  24.9      15 0.00052   26.8   0.0   49   58-106    18-74  (152)
 65 1otf_A 4-oxalocrotonate tautom  24.8      57  0.0019   18.8   2.6   22   57-78     14-35  (62)
 66 2opa_A Probable tautomerase YW  24.7      58   0.002   18.7   2.7   22   57-78     14-35  (61)
 67 3abf_A 4-oxalocrotonate tautom  22.6      62  0.0021   18.8   2.5   21   58-78     16-36  (64)
 68 3m21_A Probable tautomerase HP  21.4      71  0.0024   19.2   2.7   21   58-78     18-38  (67)
 69 2pjh_A Protein NPL4, nuclear p  20.9      86   0.003   20.1   3.1   26   52-78     16-41  (80)
 70 1h3o_B Transcription initiatio  20.7      48  0.0016   21.9   1.8   22   92-113    55-76  (76)

No 1  
>2l9f_A CALE8, meacp; transferase, acyl carrier protein; NMR {Micromonospora echinospora}
Probab=99.53  E-value=8.2e-15  Score=105.54  Aligned_cols=56  Identities=20%  Similarity=0.199  Sum_probs=52.6

Q ss_pred             CChHHHHHHHHHHHHHHcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHhhcCcch
Q 032705           57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSGNSDELR  113 (135)
Q Consensus        57 ~ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~-DLG~DSLD~VEIvm~LEeeFgI~i  113 (135)
                      .+..+|+++|++||.++++++. +.|+++++|. |||+||||+|||||.+|++||+++
T Consensus        10 ~~~~~I~~~V~~ilaE~lev~~-e~Vtpda~l~dDLglDSLd~VeLVm~lE~~fGi~i   66 (102)
T 2l9f_A           10 PAATGALELVRHLVAERAELPV-EVLRDDSRFLDDLHMSSITVGQLVNEAARAMGLSA   66 (102)
T ss_dssp             SSSCCHHHHHHHHHHHHTTSCS-SSCCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCST
T ss_pred             chHHHHHHHHHHHHHHHHCCCH-HHcCCCcchhhhcCCcHHHHHHHHHHHHHHhCCCC
Confidence            3567899999999999999997 6999999997 999999999999999999999996


No 2  
>2kci_A Putative acyl carrier protein; alpha, ACP, PCP, structural genomics, unknown function, PSI- 2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 2kjs_A* 2lml_A* 2kwm_A*
Probab=99.46  E-value=1.9e-14  Score=99.82  Aligned_cols=52  Identities=21%  Similarity=0.139  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHhhcCcch
Q 032705           61 ETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSGNSDELR  113 (135)
Q Consensus        61 ei~~~V~eII~e~l~l~~~~~It~dt~f~-DLG~DSLD~VEIvm~LEeeFgI~i  113 (135)
                      +++++|++|+++++++++ .+|+++++|. |||+|||+++||+++||++|||++
T Consensus         2 ~i~ekv~~il~e~l~~d~-~~i~~d~~l~~dlg~DSL~~veli~~lE~eF~I~i   54 (87)
T 2kci_A            2 PTLDALTPIFRQVFDDDS-IVLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKF   54 (87)
T ss_dssp             CSHHHHHHHHHHHTTCSC-CCCCTTCCSTTCCCCCSTHHHHHHHHHHHHHTCCC
T ss_pred             cHHHHHHHHHHHHhCCCH-HHCCCCCCcccccCCChHHHHHHHHHHHHHHCCcc
Confidence            478999999999999986 6999999998 799999999999999999999998


No 3  
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45  E-value=2.3e-13  Score=94.21  Aligned_cols=79  Identities=20%  Similarity=0.238  Sum_probs=65.0

Q ss_pred             ccCCChHHHHHHHHHHHHHHcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHhhcCcchh-----------hhhhHhh
Q 032705           54 VSCSAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSGNSDELRR-----------RIWDWCR  121 (135)
Q Consensus        54 v~~~ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~-DLG~DSLD~VEIvm~LEeeFgI~i~-----------~~~~~~~  121 (135)
                      ++.++++++.++|++++++.++++. .+|+++++|. |||+|||+++||++.||++|||+++           .+.+++.
T Consensus         8 m~~m~~~~i~~~l~~~l~~~l~~~~-~~i~~d~~l~~dlG~DSL~~vel~~~le~~fgi~i~~~~l~~~~Tv~~l~~~i~   86 (99)
T 2dnw_A            8 MPPLTLEGIQDRVLYVLKLYDKIDP-EKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIA   86 (99)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTSCT-TTCCTTCCCCCCCCCCHHHHHHHHHHHHHHTTCCCCHHHHTTCCSHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCH-hhCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCCCCHHHHHhCCCHHHHHHHHH
Confidence            4456899999999999999999986 6999999995 9999999999999999999999972           3445554


Q ss_pred             hCCCCCCcCCCCC
Q 032705          122 RGKLPEHHNGPRG  134 (135)
Q Consensus       122 ~~~l~~~~~~~~~  134 (135)
                       ..+++...+|.+
T Consensus        87 -~~~~~~~~~p~~   98 (99)
T 2dnw_A           87 -DKKDVYESGPSS   98 (99)
T ss_dssp             -HHCCSCSCSCCC
T ss_pred             -HHhcccccCCCC
Confidence             345555666665


No 4  
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=99.43  E-value=3.1e-14  Score=93.97  Aligned_cols=72  Identities=24%  Similarity=0.315  Sum_probs=59.7

Q ss_pred             CChHHHHHHHHHHHHHHcCCCCCCCCCCCCCc-cccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCCCCCCc
Q 032705           57 SAKPETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGKLPEHH  129 (135)
Q Consensus        57 ~ak~ei~~~V~eII~e~l~l~~~~~It~dt~f-~DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~l~~~~  129 (135)
                      ++++++.++|++++++.+++++ ++|+++++| .|||+|||+.+||++.||++|||+++  .+++.-+-++|.++.
T Consensus         3 m~~~~i~~~l~~~l~~~l~~~~-~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i   77 (81)
T 1f80_D            3 LGSADTLERVTKIIVDRLGVDE-ADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAEKIATVGDAVNYI   77 (81)
T ss_dssp             --CCHHHHHHHHHHHHHSSCCS-SCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCCCCHHHHHHCCBHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHHCCCH-HhCCCccchHHHcCCcHHHHHHHHHHHHHHhCCccCHHHHHHCCCHHHHHHHH
Confidence            4678999999999999999986 699999999 69999999999999999999999974  355555555555443


No 5  
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=99.42  E-value=3.7e-14  Score=93.94  Aligned_cols=57  Identities=46%  Similarity=0.585  Sum_probs=52.2

Q ss_pred             ChHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcchh
Q 032705           58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELRR  114 (135)
Q Consensus        58 ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i~  114 (135)
                      +++++.++|++++++.++++++.+|+++++|.|||+|||+.+||++.||++|||+++
T Consensus         1 ~~~~i~~~l~~i~~~~l~~~~~~~i~~~~~l~dlG~DSl~~vel~~~le~~fgi~i~   57 (82)
T 2ava_A            1 AKKETIDKVSDIVKEKLALGADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGINVD   57 (82)
T ss_dssp             CCHHHHHHHHHHHHHHTTCSSSSCCCSSCCSCCCTTCCSCHHHHHHHHHHHTTCCCC
T ss_pred             ChHHHHHHHHHHHHHHhCCCcccccCCCCchhhcCCCHHHHHHHHHHHHHHHCCccC
Confidence            467899999999999999986238999999999999999999999999999999973


No 6  
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A*
Probab=99.42  E-value=2.6e-14  Score=95.03  Aligned_cols=70  Identities=23%  Similarity=0.290  Sum_probs=58.8

Q ss_pred             ChHHHHHHHHHHHHHHcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCCCCCC
Q 032705           58 AKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGKLPEH  128 (135)
Q Consensus        58 ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~-DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~l~~~  128 (135)
                      +++++.++|++++++.++++. ++|+++++|. |||+|||+++||++.||++|||+++  .+.++-+-++|.++
T Consensus         2 ~~~~i~~~l~~ii~~~l~~~~-~~i~~d~~l~~dlg~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~   74 (81)
T 3gzm_A            2 SLKSTFDDIKKIISKQLSVEE-DKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKINTVQDAIDY   74 (81)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCG-GGCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCCCCHHHHHTCCBHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCcCH-HHCCCCCcchhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHcCCHHHHHHH
Confidence            578999999999999999986 6999999995 9999999999999999999999973  34444454544433


No 7  
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*
Probab=99.42  E-value=3.8e-14  Score=98.81  Aligned_cols=70  Identities=29%  Similarity=0.309  Sum_probs=59.3

Q ss_pred             CChHHHHHHHHHHHHHHcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCCCCC
Q 032705           57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGKLPE  127 (135)
Q Consensus        57 ~ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~-DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~l~~  127 (135)
                      .+++++.++|+++|++.+++++ ++|+++++|. |||+|||+.+||++.||++|||+++  .+++..+-++|.+
T Consensus        18 ~t~~~i~~~l~~iia~~l~~~~-~~i~~d~~l~~dLGlDSL~~vel~~~lE~~fgi~i~~~~l~~~~Tv~~l~~   90 (97)
T 3ejb_A           18 SHMSTIEERVKKIIGEQLGVKQ-EEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAID   90 (97)
T ss_dssp             CCCCCHHHHHHHHHHHHSCCCT-TTSCTTCBTTTTTCCCTTHHHHHHHHHHHHTTCCCCHHHHHHCCBHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCcCH-HHCCCCCCchhhcCCCHHHHHHHHHHHHHHHCCCCCHHHHHhCCCHHHHHH
Confidence            4788999999999999999986 6999999995 9999999999999999999999984  3444445454443


No 8  
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=99.41  E-value=7.4e-14  Score=92.11  Aligned_cols=69  Identities=28%  Similarity=0.236  Sum_probs=58.3

Q ss_pred             CChHHHHHHHHHHHHHHcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCCCC
Q 032705           57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGKLP  126 (135)
Q Consensus        57 ~ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~-DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~l~  126 (135)
                      ++++++.++|++++++.+++++ ++|+++++|. |||+|||+.+||+..||++|||+++  .+++..+-++|.
T Consensus         2 m~~~~i~~~l~~ii~~~l~~~~-~~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~i~~~~~~~~~Tv~~l~   73 (81)
T 2lol_A            2 STTDKIEQKVIEMVAEKLNKDK-AIITTDSRFIEDLKADSLDTVELMMAIEVEYGIDIPDDEATKIKTVSDVI   73 (81)
T ss_dssp             CSHHHHHHHHHHHHHHHSCCCT-TTCCTTCCHHHHTTCCHHHHHHHHHHHHHHHCCCCCGGGGGGSSSHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCh-hhCCCCCcHHHhcCCcHHHHHHHHHHHHHHHCCCCCHHHHHHcCCHHHHH
Confidence            4678999999999999999986 6999999995 9999999999999999999999974  344444444443


No 9  
>2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa}
Probab=99.11  E-value=2e-14  Score=101.73  Aligned_cols=81  Identities=15%  Similarity=0.110  Sum_probs=69.1

Q ss_pred             ccccccCCCh--HHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCCC
Q 032705           50 NRFCVSCSAK--PETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGKL  125 (135)
Q Consensus        50 ~r~~v~~~ak--~ei~~~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~l  125 (135)
                      .|+.+.++.+  .++.++|+++|++.+++++ ++|+++++|.|||+|||+.+||++.||++|||+++  .+++..+-++|
T Consensus        13 ~~~~~~~~~~M~~ei~~~l~~ila~~l~i~~-~~I~~d~~l~dLGlDSL~~veL~~~lE~~fgi~i~~~~l~~~~TV~~l   91 (103)
T 2lte_A           13 GRENLYFQGHMPNDMEDHLLTVLSVASGVPK-EEISRDSRMEDLAFDSLVVSELSLKLRKEFGVTGVDDELDLLETVDEL   91 (103)
Confidence            3566666653  3599999999999999986 69999999999999999999999999999999984  46777788898


Q ss_pred             CCCcCC
Q 032705          126 PEHHNG  131 (135)
Q Consensus       126 ~~~~~~  131 (135)
                      .+++..
T Consensus        92 ~~~I~~   97 (103)
T 2lte_A           92 FQLVEK   97 (103)
Confidence            887754


No 10 
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=99.40  E-value=4.2e-14  Score=99.92  Aligned_cols=71  Identities=27%  Similarity=0.311  Sum_probs=58.1

Q ss_pred             CChHHHHHHHHHHHHHHcCCCCCCCCCCCCCc-cccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCCCCCC
Q 032705           57 SAKPETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGKLPEH  128 (135)
Q Consensus        57 ~ak~ei~~~V~eII~e~l~l~~~~~It~dt~f-~DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~l~~~  128 (135)
                      +.+.++.++|+++|++.+++++ ++|+++++| .|||+|||+.+||++.||++|||+++  .+.+..+-++|.++
T Consensus        22 m~~mei~~~l~~iiae~l~~~~-~~I~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~~~~l~~~~Tv~dl~~~   95 (101)
T 4dxe_H           22 SNAMENFDKVKDIIVDRLGVDA-DKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEKINTVGDAVKF   95 (101)
T ss_dssp             --CTTHHHHHHHHHHHTTCCCG-GGCCTTCBTTTTSCCCHHHHHHHHHHHHHHTTCCCCHHHHTTCCBHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHCcCh-hhCCCCCcchhhcCCCcHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHH
Confidence            3566899999999999999986 699999999 59999999999999999999999974  34444454554433


No 11 
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=99.40  E-value=5.6e-14  Score=93.66  Aligned_cols=69  Identities=30%  Similarity=0.371  Sum_probs=58.3

Q ss_pred             CChHHHHHHHHHHHHHHcCCCCCCCCCCCCCc-cccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCCCC
Q 032705           57 SAKPETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGKLP  126 (135)
Q Consensus        57 ~ak~ei~~~V~eII~e~l~l~~~~~It~dt~f-~DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~l~  126 (135)
                      ++++++.++|++++++.+++++ .+|+++++| .|||+|||+.+||++.||++|||+++  .+++..+-++|.
T Consensus         5 m~~~~i~~~l~~~i~~~l~~~~-~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~   76 (84)
T 2kwl_A            5 MDNDEIFSKVRSIISEQLDKKE-DEITTDSRFVEDLNADSLDIYELLYLLEEAFDDKIPENEANEFETVGDVV   76 (84)
T ss_dssp             STHHHHHHHHHHHHHHHHCCCG-GGCCTTTHHHHTSSSCHHHHHHHHHHHHHHHTCCTTTTGGGGCSSHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCc-ccCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHCCCHHHHH
Confidence            5788999999999999999986 699999999 69999999999999999999999984  344444444443


No 12 
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=99.39  E-value=9.5e-14  Score=97.92  Aligned_cols=69  Identities=19%  Similarity=0.279  Sum_probs=58.9

Q ss_pred             CCChHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCCC
Q 032705           56 CSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGKL  125 (135)
Q Consensus        56 ~~ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~l  125 (135)
                      .+.++++.++|+++|++.+++++ .+|+++++|.|||+|||+.+||++.||++|||+++  .++++.+-++|
T Consensus        12 ~~~~~~i~~~l~~ila~~l~v~~-~~I~~d~~L~dLGlDSL~~veL~~~LE~~fgi~i~~~~l~~~~TV~~L   82 (100)
T 1vku_A           12 HMERKKLIAKFVEIASEKMGKDL-ETVDEENTFKELGFDSIDVIDLVMFFEDEFALRIEDEEISKIRKVKDL   82 (100)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCCCC-CSCCTTSBTTTTTCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHH
T ss_pred             hccHHHHHHHHHHHHHHHHCCCH-HHCCCCCCHHHcCCchHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHH
Confidence            56799999999999999999986 69999999999999999999999999999999974  23344343443


No 13 
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=99.38  E-value=2e-13  Score=89.79  Aligned_cols=69  Identities=20%  Similarity=0.288  Sum_probs=58.0

Q ss_pred             CChHHHHHHHHHHHHHHcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCCCC
Q 032705           57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGKLP  126 (135)
Q Consensus        57 ~ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~-DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~l~  126 (135)
                      ++++++.++|++++++.++++. ++|+++++|. |||+|||+.++|+..||++|||+++  .+++.-+-++|.
T Consensus         3 m~~~~i~~~l~~~i~~~l~~~~-~~i~~~~~l~~dlG~DSl~~~~l~~~le~~fgi~i~~~~~~~~~Tv~~l~   74 (82)
T 2cnr_A            3 ATQEEIVAGLAEIVNEIAGIPV-EDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPDDDVKNLKTVGDAT   74 (82)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCCT-TTCCTTSBTTTTSCCCHHHHHHHHHHHHGGGTBCCCGGGGGTCSBHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCH-HHCCCCcchhhccCCChHHHHHHHHHHHHHhCCCCCHHHHHHcCCHHHHH
Confidence            4788999999999999999986 6999999995 9999999999999999999999974  344444444443


No 14 
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=99.38  E-value=5.8e-13  Score=89.12  Aligned_cols=56  Identities=20%  Similarity=0.132  Sum_probs=51.5

Q ss_pred             ChHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccC-CchhhHHHHHHHHHhhcCcchh
Q 032705           58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALG-ADSLDTVHLTLLLSGNSDELRR  114 (135)
Q Consensus        58 ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~DLG-~DSLD~VEIvm~LEeeFgI~i~  114 (135)
                      +++++.++|+++|+++++.+. .+++++++|.++| +|||+++||+++||++|||+++
T Consensus         1 ~~~~i~~~i~~il~~~~~~~~-~~i~~d~~l~~~g~lDSl~~velv~~lE~~fgi~i~   57 (80)
T 1dv5_A            1 ADEAIKNGVLDILADLTGSDD-VKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAP   57 (80)
T ss_dssp             CCHHHHHHHHHHHHHHHTSSS-TTTCSSCCSSTTSSCCSHHHHHHHHHHTTTSCCCCC
T ss_pred             CHHHHHHHHHHHHHHHhCCCc-ccCCCCcchhhccCcChHHHHHHHHHHHHHhCCcCC
Confidence            467899999999999999875 5899999999888 9999999999999999999984


No 15 
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=99.38  E-value=1.5e-13  Score=89.82  Aligned_cols=69  Identities=26%  Similarity=0.270  Sum_probs=57.8

Q ss_pred             CChHHHHHHHHHHHHHHcCCCCCCCCCCCCCc-cccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCCCC
Q 032705           57 SAKPETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGKLP  126 (135)
Q Consensus        57 ~ak~ei~~~V~eII~e~l~l~~~~~It~dt~f-~DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~l~  126 (135)
                      ++++++.++|++++++.++++. .+|+++++| .|||+|||+.++|+..||++|||+++  .+++.-+-++|.
T Consensus         1 M~~~~i~~~l~~~i~~~l~~~~-~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fgi~i~~~~~~~~~Tv~~l~   72 (80)
T 1x3o_A            1 MTEQEIFEKVKAVIADKLQVEP-EKVTLEARFIEDLGADSLDTVELIMGLEDEFGLEISDEEAEKIRTVKDAV   72 (80)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCG-GGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCBHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCH-HHCCCcCcHHhhcCccHHHHHHHHHHHHHHHCCCcCHHHHHHcCCHHHHH
Confidence            4678999999999999999976 689999999 69999999999999999999999973  344444444433


No 16 
>2kw2_A Specialized acyl carrier protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} PDB: 2ll8_A* 2lpk_A 3lmo_A
Probab=99.38  E-value=9.8e-14  Score=97.04  Aligned_cols=53  Identities=25%  Similarity=0.338  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHhhcCcchh
Q 032705           61 ETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSGNSDELRR  114 (135)
Q Consensus        61 ei~~~V~eII~e~l~l~~~~~It~dt~f~-DLG~DSLD~VEIvm~LEeeFgI~i~  114 (135)
                      ++.++|+++|+++++++. .+|+++++|. |||+|||+++||++.||++|||+++
T Consensus         3 ~i~~~v~~ii~~~l~~~~-~~i~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~   56 (101)
T 2kw2_A            3 STFDRVATIIAETCDIPR-ETITPESHAIDDLGIDSLDFLDIAFAIDKAFGIKLP   56 (101)
T ss_dssp             CHHHHHHHHHHHHHCCCG-GGCCTTCBCCCCCCCCHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHhCCCH-hhCCCCcchHHhcCCCHHHHHHHHHHHHHHHCCccC
Confidence            688999999999999986 6999999995 9999999999999999999999974


No 17 
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}
Probab=99.37  E-value=8.5e-14  Score=92.56  Aligned_cols=67  Identities=22%  Similarity=0.276  Sum_probs=56.6

Q ss_pred             ChHHHHHHHHHHHHHHcCCCCCCCCCCCCCc-cccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCCC
Q 032705           58 AKPETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGKL  125 (135)
Q Consensus        58 ak~ei~~~V~eII~e~l~l~~~~~It~dt~f-~DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~l  125 (135)
                      .++++.++|++++++.++++. .+|+++++| .|||+|||+++||++.||++|||+++  .+++.-+-++|
T Consensus         4 ~~~~i~~~l~~ii~~~l~~~~-~~i~~d~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l   73 (82)
T 2qnw_A            4 DDRPLLERVKDVVADQLGVDR-ARINPESNFIKDLDADSLDSVELVMAFEEKFGVSIPDEEASKIATVQDA   73 (82)
T ss_dssp             CSHHHHHHHHHHHHHHHCCCG-GGCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCH-hhCCCccchhhccCCcHHHHHHHHHHHHHHHCCcCCHHHHHHcCCHHHH
Confidence            578899999999999999986 699999999 59999999999999999999999974  34343343433


No 18 
>2kjs_A Putative acyl carrier protein; alpha, ACP, PNS, structural genomics, PSI-2, protein structure initiative; HET: PNS; NMR {Geobacter metallireducens gs-15} PDB: 2lml_A* 2kwm_A*
Probab=99.37  E-value=9.3e-14  Score=95.88  Aligned_cols=64  Identities=20%  Similarity=0.150  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCCCC
Q 032705           62 TVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGKLP  126 (135)
Q Consensus        62 i~~~V~eII~e~l~l~~~~~It~dt~f~-DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~l~  126 (135)
                      ++++|++|++++|++++ ..|+++++|. ++|+|||+.+||++.||++|||+++  .+.+.-+-|+|.
T Consensus         3 tle~l~~I~~e~l~~d~-~~i~~~~~~~d~lg~DSL~~veli~~ie~~fgi~i~~~~l~~~~TV~dl~   69 (87)
T 2kjs_A            3 TLDALTPIFRQVFDDDS-IVLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKFALGELQKLKNVGDLA   69 (87)
T ss_dssp             SHHHHHHHHHHHHTCSS-CCCCTTCCSTTCSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCSHHHHH
T ss_pred             hHHHHHHHHHHHhCCCc-cccCCCCCcccCCCCChHHHHHHHHHHHHHhCceecHHHHHcCCCHHHHH
Confidence            57899999999999986 7999999998 5899999999999999999999973  344444444443


No 19 
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=99.36  E-value=4.8e-14  Score=95.10  Aligned_cols=69  Identities=19%  Similarity=0.085  Sum_probs=57.3

Q ss_pred             CChHHHHHHHHHHHHHHc---CCCCCCCCCCCCCc-cccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCCCC
Q 032705           57 SAKPETVQKVCEIVRRQL---ALPAETELTSESKF-SALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGKLP  126 (135)
Q Consensus        57 ~ak~ei~~~V~eII~e~l---~l~~~~~It~dt~f-~DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~l~  126 (135)
                      ++++++.++|+++|++.+   +++. ++|+++++| .|||+|||+++||++.||++|||+++  .++++.+-++|.
T Consensus         4 m~~~~i~~~v~~~i~~~l~~~~~~~-~~i~~d~~l~~dlglDSl~~vel~~~lE~~fgi~i~~~~~~~~~Tv~~l~   78 (88)
T 2l4b_A            4 MVSEEIKAQVMESVIGCLKLNDEQK-QILSGTTNLAKDFNLDSLDFVDLIMSLEERFSLEISDEDAQKLETVDDIC   78 (88)
T ss_dssp             SSCHHHHHHHHHHHHHHHTCCHHHH-HSCCTTSCTTTTTTCCHHHHHHHHHHHHHHTTCCCCHHHHHTCCSHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhhCCCCH-hhCCCCCchhhccCCcHHHHHHHHHHHHHHHCCCcCHHHHHHcCCHHHHH
Confidence            568899999999999999   6665 689999999 59999999999999999999999974  344444444443


No 20 
>2lki_A Putative uncharacterized protein; helical bundle, acyl carrier, phosphopantetheine, fatty acid biosynthesis, lipid synthesis, PSI-biology; HET: PNS; NMR {Nitrosomonas europaea}
Probab=99.36  E-value=4.7e-13  Score=95.20  Aligned_cols=63  Identities=21%  Similarity=0.157  Sum_probs=50.5

Q ss_pred             cccccCCChHHHHHHHHHHHHHHcCCC--CCCCCCCCCCcc-ccCC-chhhHHHHHHHHHhhcCcchh
Q 032705           51 RFCVSCSAKPETVQKVCEIVRRQLALP--AETELTSESKFS-ALGA-DSLDTVHLTLLLSGNSDELRR  114 (135)
Q Consensus        51 r~~v~~~ak~ei~~~V~eII~e~l~l~--~~~~It~dt~f~-DLG~-DSLD~VEIvm~LEeeFgI~i~  114 (135)
                      |-++.+..+.++.++|+++|++.++++  + .+|+++++|. |||+ |||+++||++.||++|||+++
T Consensus        14 ~~~~~~~~~m~i~~~i~~il~e~l~~~~~~-~~i~~d~~L~~dLGl~DSL~~veLi~~lE~~FgI~I~   80 (105)
T 2lki_A           14 RENLYFQGHMQHLEAVRNILGDVLNLGERK-HTLTASSVLLGNIPELDSMAVVNVITALEEYFDFSVD   80 (105)
T ss_dssp             ---------CCTHHHHHHHHHHHTTCTTGG-GTCCTTSBCBTTBTTCCHHHHHHHHHHHHHHHTSCCC
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHhCCCccc-ccCCCCCchhhhcCcccHHHHHHHHHHHHHHhCCCcC
Confidence            555667777789999999999999987  4 6899999998 8999 999999999999999999974


No 21 
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=99.35  E-value=6.9e-14  Score=93.58  Aligned_cols=68  Identities=15%  Similarity=-0.008  Sum_probs=54.7

Q ss_pred             ChHHHHHHHHHHHHHHcCCCCCC---CCCCCCCccccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCCC
Q 032705           58 AKPETVQKVCEIVRRQLALPAET---ELTSESKFSALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGKL  125 (135)
Q Consensus        58 ak~ei~~~V~eII~e~l~l~~~~---~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~l  125 (135)
                      +++.+.++|++++++.+++++..   +|+++++|.|||+|||+++||++.||++|||+++  .+++..+-++|
T Consensus         2 ~~~~~~~~l~~il~~~l~~~~~~~~~~i~~~~~l~dlG~DSL~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l   74 (86)
T 1af8_A            2 ATLLTTDDLRRALVECAGETDGTDLSGDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPREL   74 (86)
T ss_dssp             CCSSCHHHHHHHHHTTCCCCSCCCTTTCSSTTSTTTTTCCTTTHHHHHHHHTTTTCSCCCTTTTTTCCSHHHH
T ss_pred             chHHHHHHHHHHHHHHhCCCcccccccCCCCCChhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHcCCCHHHH
Confidence            34567899999999999998521   6899999999999999999999999999999974  34444343433


No 22 
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1
Probab=99.32  E-value=5.9e-13  Score=94.68  Aligned_cols=56  Identities=21%  Similarity=0.324  Sum_probs=52.7

Q ss_pred             CChHHHHHHHHHHHHHHcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHhhcCcch
Q 032705           57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSGNSDELR  113 (135)
Q Consensus        57 ~ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~-DLG~DSLD~VEIvm~LEeeFgI~i  113 (135)
                      ++++++.++|++++++.++++. .+|+++++|. |||+|||+++||++.||++|||++
T Consensus         3 m~~~~i~~~l~~il~~~l~~~~-~~i~~d~~l~~dlG~DSL~~vel~~~lE~~fgi~i   59 (115)
T 1klp_A            3 VTQEEIIAGIAEIIEEVTGIEP-SEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKI   59 (115)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCCT-TTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTCCCC
T ss_pred             CCHHHHHHHHHHHHHHHhCcCH-HhCCCCCchhhccCCCHHHHHHHHHHHHHHHCCCC
Confidence            5788999999999999999986 6999999995 999999999999999999999997


No 23 
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A
Probab=99.31  E-value=2e-13  Score=89.39  Aligned_cols=67  Identities=28%  Similarity=0.326  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCCCCC
Q 032705           60 PETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGKLPE  127 (135)
Q Consensus        60 ~ei~~~V~eII~e~l~l~~~~~It~dt~f~-DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~l~~  127 (135)
                      +++.++|++++++.+++++ ++|+++++|. |||+|||+.+||+..||++|||+++  .+++.-+-++|.+
T Consensus         2 ~~i~~~l~~~~~~~l~~~~-~~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~i~~~~l~~~~Tv~~l~~   71 (78)
T 1l0i_A            2 STIEERVKKIIGEQLGVKQ-EEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKMTTVQAAID   71 (78)
T ss_dssp             CCHHHHHHHHHHHHHTCCG-GGCCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCH-HHCCCCcchhhhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHcCCHHHHHH
Confidence            3578999999999999986 6999999996 9999999999999999999999974  3444444444443


No 24 
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1
Probab=99.30  E-value=1.5e-12  Score=92.07  Aligned_cols=59  Identities=20%  Similarity=0.173  Sum_probs=47.9

Q ss_pred             CCChHHHHHHHHHHHHHHcCCC-CCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcchh
Q 032705           56 CSAKPETVQKVCEIVRRQLALP-AETELTSESKFSALGADSLDTVHLTLLLSGNSDELRR  114 (135)
Q Consensus        56 ~~ak~ei~~~V~eII~e~l~l~-~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i~  114 (135)
                      ...++++.++|+++|++.++++ +..+|+++++|.|||+|||+++||++.||++|||+++
T Consensus        17 ~~~~~~i~~~i~~il~~~l~~~v~~~~i~~d~~l~dlGlDSL~~veLv~~lE~~fgI~i~   76 (105)
T 2jq4_A           17 LYFQGHMNATIREILAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFP   76 (105)
T ss_dssp             ------CHHHHHHHHHHTSCCSSCGGGCCTTSCGGGGTCCHHHHHHHHHHHHHHHSCCCC
T ss_pred             CCCHHHHHHHHHHHHHHHhccCCCcccCCCCCCHhhcCCCHHHHHHHHHHHHHHHCCCcC
Confidence            4468899999999999987653 1268999999999999999999999999999999974


No 25 
>1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} SCOP: a.28.1.1
Probab=99.27  E-value=4.6e-13  Score=88.99  Aligned_cols=70  Identities=16%  Similarity=0.157  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCCCC--CCCCccccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCCCCCCc
Q 032705           60 PETVQKVCEIVRRQLALPAETELT--SESKFSALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGKLPEHH  129 (135)
Q Consensus        60 ~ei~~~V~eII~e~l~l~~~~~It--~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~l~~~~  129 (135)
                      +.+.++|++++++.++++.+.+|+  ++++|.|||+|||+.+||++.||++|||+++  .+++.-+-++|.++.
T Consensus         3 ~~~~~~l~~~l~~~l~~~~~~~i~~~~~~~~~dlG~DSL~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i   76 (83)
T 1or5_A            3 ALTVDDLKKLLAETAGEDDSVDLAGELDTPFVDLGYDSLALLETAAVLQQRYGIALTDETVGRLGTPRELLDEV   76 (83)
T ss_dssp             CSCHHHHHHHHHHHSCCCSSCCGGGCSSSCHHHHSCCHHHHHHHHHHHHTTSCCCCSHHHHHHCCCSHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccccCCCCCCcHHHhCCCHHHHHHHHHHHHHHHCCccCHHHHhccCCHHHHHHHH
Confidence            357789999999999998622798  9999999999999999999999999999974  355555555554443


No 26 
>1fh1_A NODF, nodulation protein F; ROOT nodulation factor, protein backbone fold, lipid binding protein; NMR {Rhizobium leguminosarum} SCOP: i.11.1.1
Probab=99.27  E-value=4.3e-13  Score=91.86  Aligned_cols=72  Identities=15%  Similarity=0.165  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHcCCCC-------CCCCCCCCCccccCCchhhHHHHHHHHHhhcCcchh---h--hhhHhhhCCCCC
Q 032705           60 PETVQKVCEIVRRQLALPA-------ETELTSESKFSALGADSLDTVHLTLLLSGNSDELRR---R--IWDWCRRGKLPE  127 (135)
Q Consensus        60 ~ei~~~V~eII~e~l~l~~-------~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i~---~--~~~~~~~~~l~~  127 (135)
                      +++.++|+++|+++++.+.       ..+|+++++|.|||+|||+++||++.||++|||+++   .  ++.+.+-|+|.+
T Consensus         3 ~~i~~~i~~ii~~~~~~~~~~~~~~~~~~i~~d~~l~dlg~DSl~~vel~~~lE~~fgi~i~~~~~~~~~~~~Tv~~l~~   82 (92)
T 1fh1_A            3 DQLTLEIISAINKLVKAENGERTSVALGEITTDTELTSLGIDSLGLADVLWDLEQLYGIKIEMNTADAWSNLNNIGDVVE   82 (92)
T ss_dssp             --CHHHHHHHHHHHC----------------------------CTTTTHHHHHHHC-----------------CTTTSTH
T ss_pred             hHHHHHHHHHHHHHHHhccccccCCCHhhCCCCCCHhhcCCChHHHHHHHHHHHHHhCCccCCccHhHHhhcCCHHHHHH
Confidence            4678899999999998543       148999999999999999999999999999999986   2  456677788876


Q ss_pred             CcCC
Q 032705          128 HHNG  131 (135)
Q Consensus       128 ~~~~  131 (135)
                      ++..
T Consensus        83 ~i~~   86 (92)
T 1fh1_A           83 AVRG   86 (92)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            6543


No 27 
>3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma}
Probab=99.26  E-value=7.9e-12  Score=88.85  Aligned_cols=56  Identities=20%  Similarity=0.157  Sum_probs=51.6

Q ss_pred             CChHHHHHHHHHHHHHHcCCCCCCCCCCCCCc------cccCCchhhHHHHHHHHHhhcCcchh
Q 032705           57 SAKPETVQKVCEIVRRQLALPAETELTSESKF------SALGADSLDTVHLTLLLSGNSDELRR  114 (135)
Q Consensus        57 ~ak~ei~~~V~eII~e~l~l~~~~~It~dt~f------~DLG~DSLD~VEIvm~LEeeFgI~i~  114 (135)
                      ++.+++.++|+++|++.++ +. .+|+++++|      .|||+|||+++||++.||++|||+++
T Consensus        15 ~~~~~i~~~i~~il~e~l~-~~-~~i~~d~~l~~~~~~~dLglDSL~~veli~~lE~~fgi~i~   76 (107)
T 3ce7_A           15 TDINAVTNYIVGMCQKFLQ-KG-EKVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVTVP   76 (107)
T ss_dssp             TCHHHHHHHHHHHHHTTBC-TT-CCCCTTSCGGGSBBTTSSBCCHHHHHHHHHHHHHHHTCCCC
T ss_pred             CCHHHHHHHHHHHHHHHhC-Cc-cccCCCCcccccCcccccCCCHHHHHHHHHHHHHHHCCCCC
Confidence            5688999999999999999 64 799999999      59999999999999999999999983


No 28 
>2l3v_A ACP, acyl carrier protein; structural genomi seattle structural genomics center for infectious disease, lipid binding protein; NMR {Brucella melitensis}
Probab=99.25  E-value=3.9e-13  Score=88.02  Aligned_cols=69  Identities=28%  Similarity=0.311  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCCCCCCCCc-cccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCCCCCCc
Q 032705           60 PETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGKLPEHH  129 (135)
Q Consensus        60 ~ei~~~V~eII~e~l~l~~~~~It~dt~f-~DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~l~~~~  129 (135)
                      +++.++|++++++.+++++ ++|+++++| .|||+|||+.++|+..||++||++++  .+++..+-++|.++.
T Consensus         3 ~~i~~~l~~~~~~~l~~~~-~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i   74 (79)
T 2l3v_A            3 SDTAERVKKIVVEHLGVDA-DKVTEGASFIDDLGADSLDTVELVMAFEEEFGVEIPDDAAETILTVGDAVKFI   74 (79)
T ss_dssp             THHHHHHHHHHHHHTCCCS-TTCCTTCCHHHHTCCCSSSSSSTTTTHHHHTTCCCCHHHHTTCSSSSTTHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCH-hhCCCCCccccccCCCHHHHHHHHHHHHHHHCCCCCHHHHHHcCCHHHHHHHH
Confidence            4789999999999999986 699999999 69999999999999999999999974  455666666666543


No 29 
>2amw_A Hypothetical protein NE2163; all helical protein, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=99.25  E-value=5.3e-12  Score=84.29  Aligned_cols=53  Identities=23%  Similarity=0.205  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHcCCC--CCCCCCCCCCcc-ccCC-chhhHHHHHHHHHhhcCcchh
Q 032705           61 ETVQKVCEIVRRQLALP--AETELTSESKFS-ALGA-DSLDTVHLTLLLSGNSDELRR  114 (135)
Q Consensus        61 ei~~~V~eII~e~l~l~--~~~~It~dt~f~-DLG~-DSLD~VEIvm~LEeeFgI~i~  114 (135)
                      ++.++|+++++++++++  . .+|+++++|. |||+ |||+++||++.||++|||+++
T Consensus         2 ~i~~~l~~il~~~l~~~~~~-~~i~~d~~l~~dlg~~DSl~~~elv~~lE~~fgi~i~   58 (83)
T 2amw_A            2 QHLEAVRNILGDVLNLGERK-HTLTASSVLLGNIPELDSMAVVNVITALEEYFDFSVD   58 (83)
T ss_dssp             CTHHHHHHHHHHHTTCGGGG-GSCCTTSCSTTTSTTTTHHHHHHHHHHHHHHTTCCCC
T ss_pred             cHHHHHHHHHHHHhCCCCcc-ccCCCcchhhhccCccCHHHHHHHHHHHHHHhCCeeC
Confidence            36789999999999987  4 6899999998 8999 999999999999999999984


No 30 
>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis}
Probab=99.22  E-value=1.3e-11  Score=89.23  Aligned_cols=49  Identities=22%  Similarity=0.238  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHHHHHHcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHhhcCcch
Q 032705           59 KPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSGNSDELR  113 (135)
Q Consensus        59 k~ei~~~V~eII~e~l~l~~~~~It~dt~f~-DLG~DSLD~VEIvm~LEeeFgI~i  113 (135)
                      ++++.++|+++|+++++      |+++++|. |||+|||+++||++.||++|||++
T Consensus        28 ~~ei~~~v~~il~e~l~------I~~d~~l~~dLGlDSLd~veLi~~LEe~FgI~I   77 (113)
T 2cgq_A           28 EEAINATIQRILRTDRG------ITANQVLVDDLGFDSLKLFQLITELEDEFDIAI   77 (113)
T ss_dssp             HHHHHHHHHHHHTCCSC------CCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHHhC------CCCCCchhhhcCCCHHHHHHHHHHHHHHhCCCc
Confidence            78899999999998887      78999995 999999999999999999999997


No 31 
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1
Probab=99.21  E-value=1.9e-12  Score=89.58  Aligned_cols=53  Identities=17%  Similarity=0.145  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHcCCCCC---CCCCCCCCccccCCchhhHHHHHHHHHhhcCcchh
Q 032705           62 TVQKVCEIVRRQLALPAE---TELTSESKFSALGADSLDTVHLTLLLSGNSDELRR  114 (135)
Q Consensus        62 i~~~V~eII~e~l~l~~~---~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i~  114 (135)
                      +.++|+++|+++++++.+   ++|+++++|.|||+|||+.+||++.||++|||+++
T Consensus         5 t~~~l~~ii~~~l~~~~~~~~~~i~~d~~~~dlG~DSL~~vel~~~le~~fgi~i~   60 (95)
T 1nq4_A            5 TLSDLLTLLRECAGEEESIDLGGDVEDVAFDALGYDSLALLNTVGRIERDYGVQLG   60 (95)
T ss_dssp             CHHHHHHHHHHHHTCSSTTCSCSCCSSSCHHHHTCCSHHHHHHHHHHHHHTCCCSC
T ss_pred             cHHHHHHHHHHHHccccccccccCCCCCChhhhCCCHHHHHHHHHHHHHHHCCccC
Confidence            567889999999987641   27999999999999999999999999999999973


No 32 
>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A
Probab=99.21  E-value=2.5e-12  Score=83.17  Aligned_cols=52  Identities=35%  Similarity=0.451  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCCCCCc-cccCCchhhHHHHHHHHHhhcCcchh
Q 032705           62 TVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSGNSDELRR  114 (135)
Q Consensus        62 i~~~V~eII~e~l~l~~~~~It~dt~f-~DLG~DSLD~VEIvm~LEeeFgI~i~  114 (135)
                      +.++|++++++.++++. .+++++++| .+||+|||+.++|+..||++||++++
T Consensus         2 i~~~l~~~~~~~l~~~~-~~i~~~~~l~~~lG~DSl~~~~l~~~le~~~gi~i~   54 (77)
T 2ehs_A            2 LEERVKEIIAEQLGVEK-EKITPEAKFVEDLGADSLDVVELIMAFEEEFGIEIP   54 (77)
T ss_dssp             HHHHHHHHHHHHHCCCG-GGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHHHHhCCCh-hhCCCccchhhccCCCHHHHHHHHHHHHHHhCCccC
Confidence            67899999999999985 689999999 79999999999999999999999973


No 33 
>2cg5_B Fatty acid synthase; transferase-hydrolase complex, transferase/hydrolase (comple fatty acid biosynthesis, phosphopantetheine transferase; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A
Probab=99.11  E-value=6.7e-11  Score=82.87  Aligned_cols=51  Identities=20%  Similarity=0.270  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcchh
Q 032705           64 QKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELRR  114 (135)
Q Consensus        64 ~~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i~  114 (135)
                      +.|+++|++++++++.++|+++.+|.|||+|||+.|||.+.||++||++++
T Consensus         9 ~~v~~~va~iLg~~~~~~I~~~~~l~dLG~DSL~aVELr~~Le~~fgi~lp   59 (91)
T 2cg5_B            9 RDLVEAVAHILGIRDLAAVNLDSSLADLGLDALMSVEVRQTLERELNLVLS   59 (91)
T ss_dssp             TTHHHHHHHHTTCCSCTTSCTTSBTTTTTCCHHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHHCCCchhhCCCCCCHHHhCCcchHHHHHHHHHHHHHCCCCC
Confidence            578999999999975468999999999999999999999999999999973


No 34 
>2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus}
Probab=99.10  E-value=1.4e-11  Score=82.24  Aligned_cols=70  Identities=20%  Similarity=0.261  Sum_probs=58.1

Q ss_pred             ChHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcchhh----hhhHhhhCCCCCC
Q 032705           58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELRRR----IWDWCRRGKLPEH  128 (135)
Q Consensus        58 ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i~~----~~~~~~~~~l~~~  128 (135)
                      ..+++.+.|++++++.++++. ++|+++++|.+||+|||..++|+..||++||++++.    +++.-+-++|.++
T Consensus         8 ~~~~~~~~l~~~~~~~l~~~~-~~i~~~~~~~~lG~DSL~~~~l~~~l~~~~g~~l~~~~~~l~~~~Tv~~la~~   81 (89)
T 2kr5_A            8 VSNEKLDAVMRVVSEESGIAL-EELTDDSNFADMGIDSLSSMVIGSRFREDLGLDLGPEFSLFIDCTTVRALKDF   81 (89)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCG-GGCCTTCBHHHHTCCHHHHHHHHHHHHHTTCCCCCSSCCTTTSCCBHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHCcCH-HHCCCCCCHHHcCccHHHHHHHHHHHHHHHCCCCCchHHHHHcCCCHHHHHHH
Confidence            567899999999999999985 689999999999999999999999999999998632    4444444444443


No 35 
>2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A
Probab=99.07  E-value=4.3e-11  Score=78.94  Aligned_cols=66  Identities=12%  Similarity=0.110  Sum_probs=56.2

Q ss_pred             CChHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhC
Q 032705           57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRG  123 (135)
Q Consensus        57 ~ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~  123 (135)
                      ...+++.+.|++++++.++++. .+|.++.+|.+||+|||..++++..||++||++++  .+++.-+.+
T Consensus        10 ~~~~~~~~~l~~~~~~~l~~~~-~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~~~~i~~~~~~~~~ti~   77 (88)
T 2afd_A           10 ASVEDIQSWLIDQFAQQLDVDP-DDIDMEESFDNYDLNSSKALILLGRLEKWLGKELNPVLIFNYPTIA   77 (88)
T ss_dssp             SSHHHHHHHHHHHHHHHHTSCG-GGCCTTSCGGGTTCCSTHHHHHHHHHHHHTTSCCCGGGTTTCCSHH
T ss_pred             CCHHHHHHHHHHHHHHHHCcCH-HHcCCCCCHHHcCccHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHH
Confidence            4678899999999999999985 68999999999999999999999999999999873  344443333


No 36 
>2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A*
Probab=99.06  E-value=5.2e-11  Score=80.26  Aligned_cols=68  Identities=21%  Similarity=0.247  Sum_probs=57.5

Q ss_pred             CChHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCCC
Q 032705           57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGKL  125 (135)
Q Consensus        57 ~ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~l  125 (135)
                      ...+++.+.|++++++.++++. ++|.++.+|.+||+|||..++|+..|+++||++++  .+++.-+.++|
T Consensus        17 ~~~~~~~~~l~~~~~~~l~~~~-~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~l~~~~l~~~~ti~~l   86 (99)
T 2liu_A           17 VNLSEIKQVLKQQLAEALYTEE-SEIAEDQKFVDLGLDSIVGVEWTTTINQTYNLNLKATKLYDYPTLLEL   86 (99)
T ss_dssp             CCHHHHHHHHHHHHHHHTTSCG-GGCCSSSCHHHHTCCHHHHHHHHHHHHHHHTCCCCHHHHHHCCSHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCcCH-HHcCCCCCHHHhCccHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHH
Confidence            4678999999999999999985 68999999999999999999999999999999863  45444443333


No 37 
>2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens}
Probab=98.98  E-value=1.2e-10  Score=89.35  Aligned_cols=56  Identities=18%  Similarity=0.128  Sum_probs=52.8

Q ss_pred             CChHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcch
Q 032705           57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELR  113 (135)
Q Consensus        57 ~ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i  113 (135)
                      ..++++.+.|++++++.++++. ++|.++.+|.|||+|||+.+||+..|+++||+++
T Consensus        22 ~~~~~i~~~l~~~~a~~l~~~~-~~i~~~~~f~~lG~DSl~~~el~~~l~~~~g~~l   77 (212)
T 2l22_A           22 VADDECAQFLRQSLAAMLYCEP-GQIRDGSRFLELGLDSVIAAQWIREINKHYQLKI   77 (212)
T ss_dssp             CCTTHHHHHHHHHHHHHTTCCT-TSCCTTCBHHHHTCCHHHHHHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHHHHHHHHHHCcCH-HHcCCCCCHHHhCCcHHHHHHHHHHHHHHHCCCC
Confidence            4678999999999999999986 6999999999999999999999999999999986


No 38 
>2ju1_A Erythronolide synthase; carrier protein domain, modular polyketide synthase, alpha- helical bundle, acyltransferase; NMR {Saccharopolyspora erythraea} PDB: 2ju2_A
Probab=98.97  E-value=1.2e-10  Score=78.53  Aligned_cols=68  Identities=22%  Similarity=0.230  Sum_probs=56.0

Q ss_pred             hHHHHHHHHHHHHHHcC-CCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCCCCC
Q 032705           59 KPETVQKVCEIVRRQLA-LPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGKLPE  127 (135)
Q Consensus        59 k~ei~~~V~eII~e~l~-l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~l~~  127 (135)
                      ++.+.+.|++++++.++ .+. ++|.++.+|.+||+|||..++|+..|+++||++++  .+++.-+.++|++
T Consensus        18 ~~~~~~~l~~~~~~~l~~~~~-~~i~~~~~f~~lG~DSL~a~~l~~~l~~~~g~~l~~~~l~~~~ti~~la~   88 (95)
T 2ju1_A           18 TAELVRLVRTSTATVLGHDDP-KAVRATTPFKELGFDSLAAVRLRNLLNAATGLRLPSTLVFDHPNASAVAG   88 (95)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCG-GGCCSSSCHHHHTCSSHHHHHHHHHHGGGTSSCCCTTHHHHCSSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCh-hhCCCCCCHHHcCCcHHHHHHHHHHHHHHHCCCCChhHHhcCCCHHHHHH
Confidence            45788899999999999 554 68999999999999999999999999999999873  4555555444443


No 39 
>4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus}
Probab=98.88  E-value=8.9e-10  Score=75.07  Aligned_cols=65  Identities=15%  Similarity=0.209  Sum_probs=54.5

Q ss_pred             hHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcch--hhhhhHhhhCCCC
Q 032705           59 KPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELR--RRIWDWCRRGKLP  126 (135)
Q Consensus        59 k~ei~~~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i--~~~~~~~~~~~l~  126 (135)
                      .+++.++|++++++.|+++   +|.++.+|++||.|||..++|+..|+++||+++  ..+++.-+..+|+
T Consensus        14 ~~~~e~~l~~i~~~vL~~~---~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~l~~~~l~~~pTi~~la   80 (93)
T 4i4d_A           14 RRALERDIAAIWAETLGRD---SVGPHEDFAALGGNSIHAIXITNRVEELVDAELSIRVLLETRTVAGMT   80 (93)
T ss_dssp             HHHHHHHHHHHHHHHHTCS---CCCTTCCTTTTTCCHHHHHHHHHHHHHHHTSCCCHHHHHHHCSHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCC---CCCCCCCHHHcCCcHHHHHHHHHHHHHHhCCCCCHHHHHcCCCHHHHH
Confidence            5678899999999999983   699999999999999999999999999999986  3455554444443


No 40 
>1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A
Probab=98.84  E-value=1.1e-09  Score=74.78  Aligned_cols=54  Identities=17%  Similarity=0.205  Sum_probs=49.4

Q ss_pred             CChHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcch
Q 032705           57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELR  113 (135)
Q Consensus        57 ~ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i  113 (135)
                      ....++.++|++++++.|+++   .|.++.+|++||.|||..++|+..|+++||+++
T Consensus        10 ~p~~~~e~~l~~i~~~vL~~~---~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~l   63 (91)
T 1dny_A           10 APTNAVESKLAEIWERVLGVS---GIGILDNFFQIGGHSLKAMAVAAQVHREYQVEL   63 (91)
T ss_dssp             CCSSHHHHHHHHHHHHHHTCS---SCCSSCCTTSSCCSSHHHHHHHHHHHHHCCCCC
T ss_pred             CCCCHHHHHHHHHHHHHhCCC---CCCCCCCHHHcCCCHHHHHHHHHHHHHHHCCCC
Confidence            356788899999999999984   789999999999999999999999999999986


No 41 
>2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens}
Probab=98.76  E-value=3.3e-09  Score=81.28  Aligned_cols=68  Identities=19%  Similarity=0.202  Sum_probs=56.7

Q ss_pred             ChHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCCCC
Q 032705           58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGKLP  126 (135)
Q Consensus        58 ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~l~  126 (135)
                      .++++.+.|++++.+.++++. ++|.++.+|.+||+|||+.+||+..|+++||++++  .+++.-+.++|+
T Consensus       127 ~~~~i~~~l~~~~~~~l~~~~-~~i~~~~~f~~lG~DSl~a~el~~~l~~~~g~~l~~~~l~~~~Ti~~La  196 (212)
T 2l22_A          127 QRESIQDYLKQSLGELLFLDP-GQLRSGAQFLDLGMDSVTGTQWMRGVSRHFSIQLAADAIYTWPTLKSLA  196 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCS-SSCCSSCCGGGGCSSSHHHHHHHHHHHHHTTCCCCGGGGGGCCSHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCh-hhCCCCCCHHHhCCCHHHHHHHHHHHHHHHCCCcCHHHHHcCCCHHHHH
Confidence            357889999999999999976 68999999999999999999999999999999863  355544444443


No 42 
>2cq8_A 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH, PP-binding, acyl carrier protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29  E-value=1.4e-07  Score=68.13  Aligned_cols=53  Identities=26%  Similarity=0.246  Sum_probs=48.1

Q ss_pred             ChHHHHHHHHHHHHHHcC-CCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcC-cch
Q 032705           58 AKPETVQKVCEIVRRQLA-LPAETELTSESKFSALGADSLDTVHLTLLLSGNSD-ELR  113 (135)
Q Consensus        58 ak~ei~~~V~eII~e~l~-l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFg-I~i  113 (135)
                      .+.++.++|++|++++|+ +   ..|.++++|++||.|||..+.|+..|+++|+ +++
T Consensus        22 ~~~~~E~~La~iW~~vL~~~---~~i~~~ddFF~lGG~SLla~rLv~~ir~~~g~v~l   76 (110)
T 2cq8_A           22 AELVTAEAVRSVWQRILPKV---LEVEDSTDFFKSGAASVDVVRLVEEVKELCDGLEL   76 (110)
T ss_dssp             THHHHHHHHHHHHHHHCSSC---SCCCTTCBHHHHHCCTTHHHHHHHHHHHHHTSCCC
T ss_pred             cchHHHHHHHHHHHHHhCCC---CCCCCCCCHHhcCChHHHHHHHHHHHHHHcCCCCc
Confidence            356789999999999998 4   3799999999999999999999999999999 876


No 43 
>3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A
Probab=98.27  E-value=2.4e-07  Score=73.83  Aligned_cols=53  Identities=19%  Similarity=0.192  Sum_probs=48.0

Q ss_pred             ChHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcch
Q 032705           58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELR  113 (135)
Q Consensus        58 ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i  113 (135)
                      .++++.++|++++++.|+++   .|..+.+|++||.|||..++|+..|+++||+++
T Consensus         8 p~~~~e~~l~~~~~~~l~~~---~i~~~~~ff~lGgdSl~a~~l~~~l~~~~~~~~   60 (329)
T 3tej_A            8 PKAGSETIIAAAFSSLLGCD---VQDADADFFALGGHXLLAMKLAAQLSRQVARQV   60 (329)
T ss_dssp             CCTTHHHHHHHHHHHHHTC----CCSTTCBTTTTTCCHHHHHHHHHHHHHHHTSCC
T ss_pred             CCCHHHHHHHHHHHHHhCCC---CCCCCCCHHHcCCcHHHHHHHHHHHHHHHCCCC
Confidence            45678899999999999985   488999999999999999999999999999986


No 44 
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=97.86  E-value=5.3e-06  Score=69.21  Aligned_cols=54  Identities=15%  Similarity=0.231  Sum_probs=49.2

Q ss_pred             CChHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcch
Q 032705           57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELR  113 (135)
Q Consensus        57 ~ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i  113 (135)
                      +...++.++|++++++.|+++   .|..+.+|++||.|||..+.++..++++||+.+
T Consensus         6 ~p~~~~e~~l~~iw~~vL~~~---~i~~~d~ff~lGgdSl~a~~l~~~~~~~~g~~l   59 (520)
T 2jgp_A            6 APRSVWEARLAQVWEQVLNVP---QVGALDDFFALGGHSLRAMRVLSSMHNEYQVDI   59 (520)
T ss_dssp             CCCSHHHHHHHHHHHHHHTCS---CCCTTCBTTTTTCCHHHHHHHHHHHHHHHCBCC
T ss_pred             CCCCHHHHHHHHHHHHHhCCC---CCCCCccHHHhcccHHHHHHHHHHHHHHhCCCc
Confidence            346788899999999999984   688999999999999999999999999999986


No 45 
>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}
Probab=97.50  E-value=1.4e-05  Score=67.42  Aligned_cols=70  Identities=13%  Similarity=0.193  Sum_probs=0.0

Q ss_pred             ChHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcch--hhhhhHhhhCCCCCCcCC
Q 032705           58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELR--RRIWDWCRRGKLPEHHNG  131 (135)
Q Consensus        58 ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i--~~~~~~~~~~~l~~~~~~  131 (135)
                      ...++.+.|++|+++.|+++   .|..+.+|++||.|||..+.|+..|++ ||+++  ..+++.-+..+|++++.+
T Consensus        42 p~~~~e~~l~~~w~~~l~~~---~i~~~~~ff~lGg~Sl~a~~l~~~~~~-~~~~~~~~~~~~~~t~~~la~~~~~  113 (508)
T 4f6l_B           42 PSNEIEQTFVDVFGEVLKQN---DVGVDDDFFELGGNSLEAMLVVSHLKR-FGHHISMQTLYQYKTVRQIVNYMYQ  113 (508)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             CCCHHHHHHHHHHHHHhCCC---CCCCCCChHHcCchHHHHHHHHHHHHH-cCCCccHHHHhcCCcHHHHHHHHHh
Confidence            46678899999999999984   788999999999999999999999986 98886  467787777788777643


No 46 
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli}
Probab=97.31  E-value=0.00023  Score=56.90  Aligned_cols=47  Identities=15%  Similarity=0.090  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcch
Q 032705           64 QKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELR  113 (135)
Q Consensus        64 ~~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i  113 (135)
                      +.+++.+++.+ +++ ++|.++.+|.+||+||+..+.|+..+++. |+++
T Consensus       218 dwlr~~va~~L-~~~-~~i~~~~nL~~lGlDSi~~m~l~~~~~~~-g~~~  264 (287)
T 2fq1_A          218 AALREVILPLL-DES-DEPFDDDNLIDYGLDSVRMMALAARWRKV-HGDI  264 (287)
T ss_dssp             HHHHHHHGGGC-CCS-SCCCTTSCSGGGTCCTTHHHHHHHHHTTT-CTTC
T ss_pred             HHHHHHHHHHh-CCH-hhcCCCCCHHHhCccHHHHHHHHHHHHHc-CCCC
Confidence            55888899989 765 68999999999999999999999999998 9987


No 47 
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=97.20  E-value=5.3e-05  Score=66.00  Aligned_cols=71  Identities=13%  Similarity=0.089  Sum_probs=0.0

Q ss_pred             ChHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHh-hcCcch--hhhhhHhhhCCCCCCcCC
Q 032705           58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSG-NSDELR--RRIWDWCRRGKLPEHHNG  131 (135)
Q Consensus        58 ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEe-eFgI~i--~~~~~~~~~~~l~~~~~~  131 (135)
                      ..+++.+.+++++++.|+++   .+..+.+|++||.|||..+.|+..|++ .||+++  ..+++.-+..+|+++..+
T Consensus       521 ~~~~~e~~l~~iw~~vL~~~---~~~~~d~Ff~lGGdSl~a~~l~~~l~~~~~~~~l~~~~~f~~pti~~la~~l~~  594 (620)
T 4dg8_A          521 ALDPDQRGCAQLWSELLGCE---VGAADQDFFLCGGNSLLALQLVALCQSAGAGANLGLADLQANSRLDQFSRLLRS  594 (620)
T ss_dssp             -----------------------------------------------------------------------------
T ss_pred             CCCHHHHHHHHHHHHHhCCC---CCCCCCChhhccCcHHHHHHHHHHHHhhCCCCCcCHHHHhcCCCHHHHHHHHHh
Confidence            35567788999999999984   578889999999999999999999999 899875  467888888888877653


No 48 
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=97.09  E-value=0.00043  Score=64.97  Aligned_cols=54  Identities=15%  Similarity=0.175  Sum_probs=49.2

Q ss_pred             CChHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcch
Q 032705           57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELR  113 (135)
Q Consensus        57 ~ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i  113 (135)
                      +...++.+.|++|+++.|+++   .|..+.+|++||.|||..++|+..|+++||+++
T Consensus       968 ~p~~~~e~~l~~~~~~vL~~~---~i~~~~~ff~lGg~Sl~a~~l~~~l~~~~g~~l 1021 (1304)
T 2vsq_A          968 GPRNEMEETIAQIWSEVLGRK---QIGIHDDFFALGGHALKAMTAASRIKKELGIDL 1021 (1304)
T ss_dssp             CCSSHHHHHHHHHHHHHHTCS---CCCTTCCTTTTTCCHHHHHHHHHHSSSTTSCCC
T ss_pred             CCCChHHHHHHHHHHHHcCCC---ccCCCCCHHHhCCChHHHHHHHHHHHHHhCCCC
Confidence            356688899999999999973   688999999999999999999999999999986


No 49 
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=96.45  E-value=0.00096  Score=57.41  Aligned_cols=62  Identities=11%  Similarity=0.002  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcch--hhhhhHhhhCCC
Q 032705           61 ETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELR--RRIWDWCRRGKL  125 (135)
Q Consensus        61 ei~~~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i--~~~~~~~~~~~l  125 (135)
                      ...+.+++++.+.++..  .++..+.+|++||.|||..+.|+..|++ +++++  ..+++.-+..+|
T Consensus       545 ~~~~~l~~~~~~~l~~~--~~~~~~d~Ff~lGgdSl~a~~l~~~l~~-~~~~~~~~~~~~~pti~~l  608 (617)
T 3rg2_A          545 ASKAALREVILPLLDES--DEPFDDDNLIDYGLDSVRMMALAARWRK-VHGDIDFVMLAKNPTIDAW  608 (617)
T ss_dssp             CSHHHHHHHHGGGSCTT--CCCCTTSCGGGGTCCHHHHHHHHHHHHT-TSTTCCHHHHHHSCCHHHH
T ss_pred             ccHHHHHHHHHHHhccC--CCCCCCCChhhcCccHHHHHHHHHHHHH-hcCCCCHHHHhcCCCHHHH
Confidence            34577889999888753  4788899999999999999999999987 57665  344444333333


No 50 
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=96.42  E-value=0.0005  Score=69.42  Aligned_cols=66  Identities=21%  Similarity=0.278  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcchh--hhhhHhhhCCCCCC
Q 032705           62 TVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDELRR--RIWDWCRRGKLPEH  128 (135)
Q Consensus        62 i~~~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~i~--~~~~~~~~~~l~~~  128 (135)
                      ..+.+.+++++.|++++.++|.++.+|.|||.|||..|||...|+++||+.+.  .+++ .+...|+++
T Consensus      2124 ~~~~l~~~~a~vL~~~~~~~i~~~~~~~~lG~DSL~avelr~~i~~~~~~~l~~~~i~~-~t~~~la~~ 2191 (2512)
T 2vz8_A         2124 SQKDLVKAVAHILGIRDVASINPDSTLVDLGLDSLMGVEVRQILEREHDLVLSMREVRQ-LSLRKLQEL 2191 (2512)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHhCCCcccccCCCCchHHhCcchHHHHHHHHHHHHHhCCcccHHHHHh-hhHHHHHHH
Confidence            34678899999999874357999999999999999999999999999999863  4444 333444443


No 51 
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=87.18  E-value=0.37  Score=28.77  Aligned_cols=21  Identities=10%  Similarity=-0.061  Sum_probs=17.7

Q ss_pred             CchhhHHHHHHHHHhhcCcch
Q 032705           93 ADSLDTVHLTLLLSGNSDELR  113 (135)
Q Consensus        93 ~DSLD~VEIvm~LEeeFgI~i  113 (135)
                      +.=|.+.||+-.|||+|||+.
T Consensus        13 lTvlE~~eLvk~leekfGVsa   33 (40)
T 1dd4_C           13 LTVSELAELVKKLEDKFGVTA   33 (40)
T ss_dssp             SCHHHHHHHHHHHHHHTCCCS
T ss_pred             CcHHHHHHHHHHHHHHHCCCc
Confidence            344778999999999999984


No 52 
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=79.19  E-value=1.2  Score=24.92  Aligned_cols=17  Identities=12%  Similarity=0.022  Sum_probs=14.4

Q ss_pred             chhhHHHHHHHHHhhcC
Q 032705           94 DSLDTVHLTLLLSGNSD  110 (135)
Q Consensus        94 DSLD~VEIvm~LEeeFg  110 (135)
                      .=+.+.|++-++||+||
T Consensus        14 TvlEl~eLvk~lEe~fG   30 (30)
T 1zav_U           14 TVSELAELVKKLEDKFG   30 (30)
T ss_dssp             BHHHHHHHHHHHHHHTC
T ss_pred             cHHHHHHHHHHHHHHhC
Confidence            34678899999999998


No 53 
>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*
Probab=71.02  E-value=0.85  Score=47.66  Aligned_cols=51  Identities=6%  Similarity=0.088  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCCCCCCCcccc-CCchhhHHHHHHHHHhhcCcc
Q 032705           61 ETVQKVCEIVRRQLALPAETELTSESKFSAL-GADSLDTVHLTLLLSGNSDEL  112 (135)
Q Consensus        61 ei~~~V~eII~e~l~l~~~~~It~dt~f~DL-G~DSLD~VEIvm~LEeeFgI~  112 (135)
                      ...+.|+.+|+..++... ++|.++.++.+| |.+|.-..||++.|+.|||+.
T Consensus      1794 ~a~~~~~~liA~~~k~~~-~~i~~~~~i~~L~gg~St~~nell~dl~~efg~~ 1845 (3089)
T 3zen_D         1794 DAADATVALIALSAKMRI-DQIEALDSIESITDGASSRRNQLLVDLGSELNLG 1845 (3089)
T ss_dssp             -----------------------------------------------------
T ss_pred             CHHHHHHHHHHHHhCCCh-hHCCccccHHHHhCCchHHHHHHHHHHHHHhCCC
Confidence            356778899999999876 699999999988 999999999999999999984


No 54 
>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1
Probab=42.97  E-value=13  Score=26.99  Aligned_cols=21  Identities=10%  Similarity=-0.100  Sum_probs=17.8

Q ss_pred             CchhhHHHHHHHHHhhcCcch
Q 032705           93 ADSLDTVHLTLLLSGNSDELR  113 (135)
Q Consensus        93 ~DSLD~VEIvm~LEeeFgI~i  113 (135)
                      +.=|.+.||+-.||++|||+.
T Consensus        15 ltllE~~eLv~~lee~fgv~a   35 (122)
T 2zjq_5           15 LTIMELADLIDGLKETWGVTA   35 (122)
T ss_pred             CCHHHHHHHHHHHHHHcCCCC
Confidence            334678899999999999995


No 55 
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=42.90  E-value=11  Score=23.29  Aligned_cols=24  Identities=21%  Similarity=0.434  Sum_probs=20.8

Q ss_pred             HHHhhcCcchhhhhhHhhhCCCCC
Q 032705          104 LLSGNSDELRRRIWDWCRRGKLPE  127 (135)
Q Consensus       104 ~LEeeFgI~i~~~~~~~~~~~l~~  127 (135)
                      .+.+.+||...-++.|++.|++|.
T Consensus        15 eva~~lgvsrstiy~~~~~g~fP~   38 (66)
T 1z4h_A           15 FIMADTGFGKTFIYDRIKSGDLPK   38 (66)
T ss_dssp             HHHHHHSSCHHHHHHHHHHHHCCC
T ss_pred             HHHHHHCcCHHHHHHHHHCCCCCC
Confidence            355678999989999999999997


No 56 
>2j01_L 50S ribosomal protein L7; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_L 3i8i_I
Probab=42.71  E-value=13  Score=27.06  Aligned_cols=21  Identities=19%  Similarity=0.010  Sum_probs=17.8

Q ss_pred             CchhhHHHHHHHHHhhcCcch
Q 032705           93 ADSLDTVHLTLLLSGNSDELR  113 (135)
Q Consensus        93 ~DSLD~VEIvm~LEeeFgI~i  113 (135)
                      +.=|.+.||+-.||++|||+.
T Consensus        15 ltllE~~eLv~~lee~fgv~a   35 (125)
T 2j01_L           15 ATVLELKQLIDALKEAWGVTA   35 (125)
T ss_pred             CCHHHHHHHHHHHHHHcCCCc
Confidence            334678899999999999996


No 57 
>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix-bundl helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} SCOP: a.108.1.1 d.45.1.1 PDB: 1dd4_A* 1giy_I 1yl3_I
Probab=37.76  E-value=13  Score=27.15  Aligned_cols=21  Identities=10%  Similarity=-0.061  Sum_probs=17.8

Q ss_pred             CchhhHHHHHHHHHhhcCcch
Q 032705           93 ADSLDTVHLTLLLSGNSDELR  113 (135)
Q Consensus        93 ~DSLD~VEIvm~LEeeFgI~i  113 (135)
                      +.=|.+.||+-.||++|||+.
T Consensus        13 ltllE~~eLv~~lee~fgv~a   33 (128)
T 1dd3_A           13 LTVSELAELVKKLEDKFGVTA   33 (128)
T ss_dssp             SCHHHHHHHHHHHHHHHCHHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCC
Confidence            344778999999999999985


No 58 
>2ftc_E L12MT, MRP-L12, 39S ribosomal protein L12, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=36.93  E-value=18  Score=26.68  Aligned_cols=21  Identities=19%  Similarity=0.072  Sum_probs=17.8

Q ss_pred             chhhHHHHHHHHHhhcCcchh
Q 032705           94 DSLDTVHLTLLLSGNSDELRR  114 (135)
Q Consensus        94 DSLD~VEIvm~LEeeFgI~i~  114 (135)
                      .=|.+.||+-.||++|||+..
T Consensus        14 tllE~~eLv~~leekfgv~aa   34 (137)
T 2ftc_E           14 TLLEISDLNELLKKTLKIQDV   34 (137)
T ss_pred             CHHHHHHHHHHHHHHhCCCcc
Confidence            346788999999999999963


No 59 
>3sgf_J 50S ribosomal protein L7/L12; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 2xtg_L 2xux_L 3uos_J 1rqu_A 1rqv_A 2gya_3 2gyc_3 1rqt_A
Probab=29.38  E-value=9.7  Score=27.65  Aligned_cols=21  Identities=14%  Similarity=0.096  Sum_probs=14.3

Q ss_pred             CchhhHHHHHHHHHhhcCcch
Q 032705           93 ADSLDTVHLTLLLSGNSDELR  113 (135)
Q Consensus        93 ~DSLD~VEIvm~LEeeFgI~i  113 (135)
                      +.=|.+.||+-.||++|||+.
T Consensus        15 ltllE~~eLv~~lee~fgVsa   35 (121)
T 3sgf_J           15 MSVMDVVELISAMEEKFGVSA   35 (121)
T ss_dssp             CHHHHHHHHHTTTCSCC----
T ss_pred             CCHHHHHHHHHHHHHHcCCCc
Confidence            444678899999999999985


No 60 
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=34.17  E-value=12  Score=22.81  Aligned_cols=47  Identities=19%  Similarity=0.306  Sum_probs=30.3

Q ss_pred             hHHHHHHHHHHHHHHcCCCCC--------CCCCCCCCccccCCchhhHHHHHHHH
Q 032705           59 KPETVQKVCEIVRRQLALPAE--------TELTSESKFSALGADSLDTVHLTLLL  105 (135)
Q Consensus        59 k~ei~~~V~eII~e~l~l~~~--------~~It~dt~f~DLG~DSLD~VEIvm~L  105 (135)
                      ...++..+++.|.+..+++++        ..+.++..+.++|+..-+++.++..+
T Consensus        19 ~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rl   73 (76)
T 3b1l_X           19 SDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRP   73 (76)
Confidence            456778888888877777642        23445566667777666666665543


No 61 
>2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A 1mnq_A
Probab=27.44  E-value=4.6  Score=31.07  Aligned_cols=43  Identities=5%  Similarity=-0.031  Sum_probs=30.7

Q ss_pred             CChHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHhhcCcc
Q 032705           57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSGNSDEL  112 (135)
Q Consensus        57 ~ak~ei~~~V~eII~e~l~l~~~~~It~dt~f~DLG~DSLD~VEIvm~LEeeFgI~  112 (135)
                      +.+.++.+.|++|.++.|+++.      +.+|++|       +.++..|.++|.-+
T Consensus        24 ~P~~~~E~~la~iw~~vL~~~~------~d~Ff~l-------~~l~~~~~~~f~~p   66 (319)
T 2hfk_A           24 ADTGAGAGMFRALFRQAVEDDR------YGEFLDV-------LAEASAFRPQFASP   66 (319)
T ss_dssp             ------CCHHHHHHHHHHHTTC------HHHHHHH-------HHHHHTTSCEECSG
T ss_pred             CCCCchHHHHHHHHHHHHcCCc------hHHHHHH-------HHHHHHHHHhcCCc
Confidence            4567788999999999999853      7778888       78888888887755


No 62 
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=27.19  E-value=13  Score=25.80  Aligned_cols=49  Identities=22%  Similarity=0.410  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHcCCCCC--------CCCCCCCCccccCCchhhHHHHHHHHHh
Q 032705           59 KPETVQKVCEIVRRQLALPAE--------TELTSESKFSALGADSLDTVHLTLLLSG  107 (135)
Q Consensus        59 k~ei~~~V~eII~e~l~l~~~--------~~It~dt~f~DLG~DSLD~VEIvm~LEe  107 (135)
                      ..+++..|++.|.+..+++++        ..+.++..+.|+|+..=+++.+++.+..
T Consensus        19 ~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~G   75 (128)
T 3u5e_m           19 SSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG   75 (128)
T ss_dssp             ---------------------------------------------------------
T ss_pred             CCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCC
Confidence            557788888888887777642        2456667788999988888888876643


No 63 
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=25.12  E-value=72  Score=18.94  Aligned_cols=21  Identities=14%  Similarity=0.251  Sum_probs=18.9

Q ss_pred             ChHHHHHHHHHHHHHHcCCCC
Q 032705           58 AKPETVQKVCEIVRRQLALPA   78 (135)
Q Consensus        58 ak~ei~~~V~eII~e~l~l~~   78 (135)
                      .|.++.+.|.+.+.+.+++++
T Consensus        14 qK~~L~~~it~~~~~~lg~~~   34 (62)
T 3m20_A           14 KKREFVERLTSVAAEIYGMDR   34 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCT
T ss_pred             HHHHHHHHHHHHHHHHhCcCc
Confidence            578899999999999999986


No 64 
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=24.93  E-value=15  Score=26.81  Aligned_cols=49  Identities=20%  Similarity=0.365  Sum_probs=0.0

Q ss_pred             ChHHHHHHHHHHHHHHcCCCCC--------CCCCCCCCccccCCchhhHHHHHHHHH
Q 032705           58 AKPETVQKVCEIVRRQLALPAE--------TELTSESKFSALGADSLDTVHLTLLLS  106 (135)
Q Consensus        58 ak~ei~~~V~eII~e~l~l~~~--------~~It~dt~f~DLG~DSLD~VEIvm~LE  106 (135)
                      ...+++..|.+.|.+..+++++        ..+.++..|.|+|+..=+++.+++.+.
T Consensus        18 ~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~   74 (152)
T 3u5c_f           18 ESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR   74 (152)
T ss_dssp             ---------------------------------------------------------
T ss_pred             CCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeecc
Confidence            3567788888888887777642        245566677788887777777776654


No 65 
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=24.82  E-value=57  Score=18.79  Aligned_cols=22  Identities=23%  Similarity=0.366  Sum_probs=19.1

Q ss_pred             CChHHHHHHHHHHHHHHcCCCC
Q 032705           57 SAKPETVQKVCEIVRRQLALPA   78 (135)
Q Consensus        57 ~ak~ei~~~V~eII~e~l~l~~   78 (135)
                      ..+.++.+.|.+.+.+.+++++
T Consensus        14 e~k~~l~~~i~~~l~~~lg~p~   35 (62)
T 1otf_A           14 EQKETLIRQVSEAMANSLDAPL   35 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCG
T ss_pred             HHHHHHHHHHHHHHHHHhCcCc
Confidence            3577899999999999999986


No 66 
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=24.73  E-value=58  Score=18.75  Aligned_cols=22  Identities=27%  Similarity=0.317  Sum_probs=19.2

Q ss_pred             CChHHHHHHHHHHHHHHcCCCC
Q 032705           57 SAKPETVQKVCEIVRRQLALPA   78 (135)
Q Consensus        57 ~ak~ei~~~V~eII~e~l~l~~   78 (135)
                      ..|.++.+.|.+.+.+.+++++
T Consensus        14 eqk~~l~~~i~~~l~~~lg~~~   35 (61)
T 2opa_A           14 EQKRNLVEKVTEAVKETTGASE   35 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCG
T ss_pred             HHHHHHHHHHHHHHHHHhCcCc
Confidence            4577899999999999999985


No 67 
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=22.57  E-value=62  Score=18.82  Aligned_cols=21  Identities=33%  Similarity=0.466  Sum_probs=18.7

Q ss_pred             ChHHHHHHHHHHHHHHcCCCC
Q 032705           58 AKPETVQKVCEIVRRQLALPA   78 (135)
Q Consensus        58 ak~ei~~~V~eII~e~l~l~~   78 (135)
                      .+.++.+.|.+.+.+.+++++
T Consensus        16 qk~~l~~~lt~~l~~~lg~~~   36 (64)
T 3abf_A           16 KKRELVRRLTEMASRLLGEPY   36 (64)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHHHHHHHHHhCCCc
Confidence            477899999999999999986


No 68 
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=21.35  E-value=71  Score=19.16  Aligned_cols=21  Identities=14%  Similarity=0.272  Sum_probs=18.8

Q ss_pred             ChHHHHHHHHHHHHHHcCCCC
Q 032705           58 AKPETVQKVCEIVRRQLALPA   78 (135)
Q Consensus        58 ak~ei~~~V~eII~e~l~l~~   78 (135)
                      .|.++.+.|.+.+.+.+++++
T Consensus        18 qK~~l~~~lt~~l~~~lg~p~   38 (67)
T 3m21_A           18 QKQQLIEGVSDLMVKVLNKNK   38 (67)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCG
T ss_pred             HHHHHHHHHHHHHHHHHCcCc
Confidence            577899999999999999986


No 69 
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=20.93  E-value=86  Score=20.06  Aligned_cols=26  Identities=15%  Similarity=0.238  Sum_probs=19.3

Q ss_pred             ccccCCChHHHHHHHHHHHHHHcCCCC
Q 032705           52 FCVSCSAKPETVQKVCEIVRRQLALPA   78 (135)
Q Consensus        52 ~~v~~~ak~ei~~~V~eII~e~l~l~~   78 (135)
                      ++|.+. ...++..+.+.|.+.++++.
T Consensus        16 ~Ri~v~-~~~t~~~L~~~I~~~~~i~~   41 (80)
T 2pjh_A           16 KRITAT-KRETAATFLKKVAKEFGFQN   41 (80)
T ss_dssp             EECCCC-SSCCHHHHHHHHHHHTCCCT
T ss_pred             EEEEcC-CcChHHHHHHHHHHHcCCCC
Confidence            556543 45688999999999998863


No 70 
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=20.68  E-value=48  Score=21.89  Aligned_cols=22  Identities=14%  Similarity=0.138  Sum_probs=19.2

Q ss_pred             CCchhhHHHHHHHHHhhcCcch
Q 032705           92 GADSLDTVHLTLLLSGNSDELR  113 (135)
Q Consensus        92 G~DSLD~VEIvm~LEeeFgI~i  113 (135)
                      |.|.|+.-++.+-||..|||.+
T Consensus        55 ~s~~le~kDvql~Ler~wni~i   76 (76)
T 1h3o_B           55 KSSTLEVKDVQLHLERQWNMWI   76 (76)
T ss_dssp             TCCEECHHHHHHHHHHHTCCCC
T ss_pred             CCCCccHHHHHHHHHhhcCCcC
Confidence            6788899999999999999864


Done!