Query 032708
Match_columns 135
No_of_seqs 157 out of 1124
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 04:56:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032708.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032708hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 1.7E-54 3.6E-59 300.7 13.1 133 1-133 14-147 (148)
2 COG5078 Ubiquitin-protein liga 100.0 2.5E-52 5.4E-57 295.0 14.8 134 1-134 18-153 (153)
3 KOG0419 Ubiquitin-protein liga 100.0 2.6E-49 5.7E-54 268.6 12.5 131 1-131 17-148 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 9.5E-49 2.1E-53 278.5 15.7 133 2-134 16-149 (152)
5 PLN00172 ubiquitin conjugating 100.0 2.3E-48 5E-53 275.2 15.4 133 1-133 14-147 (147)
6 KOG0425 Ubiquitin-protein liga 100.0 1.2E-45 2.7E-50 257.2 13.4 131 1-131 18-163 (171)
7 KOG0424 Ubiquitin-protein liga 100.0 2.5E-44 5.5E-49 247.4 12.8 132 2-133 18-157 (158)
8 KOG0418 Ubiquitin-protein liga 100.0 5.5E-43 1.2E-47 250.4 12.5 130 5-134 23-154 (200)
9 PF00179 UQ_con: Ubiquitin-con 100.0 4.9E-43 1.1E-47 245.8 11.5 127 2-128 11-140 (140)
10 cd00195 UBCc Ubiquitin-conjuga 100.0 5E-42 1.1E-46 241.0 14.0 128 1-128 12-141 (141)
11 smart00212 UBCc Ubiquitin-conj 100.0 1.2E-41 2.5E-46 240.2 15.2 131 2-132 12-145 (145)
12 KOG0421 Ubiquitin-protein liga 100.0 1.4E-42 2.9E-47 239.0 9.9 129 3-131 44-172 (175)
13 KOG0426 Ubiquitin-protein liga 100.0 6.1E-40 1.3E-44 223.1 12.2 130 2-131 18-162 (165)
14 KOG0416 Ubiquitin-protein liga 100.0 8.5E-39 1.8E-43 225.6 10.8 129 6-134 18-149 (189)
15 KOG0420 Ubiquitin-protein liga 100.0 4.7E-37 1E-41 217.1 10.8 130 4-134 42-176 (184)
16 KOG0422 Ubiquitin-protein liga 100.0 3.5E-36 7.5E-41 206.2 12.2 123 11-134 26-150 (153)
17 KOG0423 Ubiquitin-protein liga 100.0 7.4E-36 1.6E-40 211.4 6.0 132 2-133 24-156 (223)
18 KOG0427 Ubiquitin conjugating 99.9 3.7E-27 8E-32 160.4 10.3 106 1-107 28-135 (161)
19 KOG0894 Ubiquitin-protein liga 99.9 1.7E-26 3.7E-31 168.7 11.5 97 1-99 18-117 (244)
20 KOG0429 Ubiquitin-conjugating 99.9 6.3E-26 1.4E-30 166.3 12.2 129 2-131 33-168 (258)
21 KOG0428 Non-canonical ubiquiti 99.8 1E-20 2.2E-25 141.1 7.9 99 1-101 23-125 (314)
22 KOG0895 Ubiquitin-conjugating 99.7 1.1E-18 2.4E-23 150.4 4.5 104 2-105 865-979 (1101)
23 KOG0895 Ubiquitin-conjugating 99.6 5.7E-15 1.2E-19 127.8 9.3 98 2-99 296-404 (1101)
24 KOG0896 Ubiquitin-conjugating 99.5 1.1E-13 2.3E-18 94.9 7.2 82 17-98 38-122 (138)
25 PF14461 Prok-E2_B: Prokaryoti 98.7 4.9E-08 1.1E-12 67.9 7.3 67 33-99 34-106 (133)
26 KOG0897 Predicted ubiquitin-co 98.7 3.7E-08 7.9E-13 66.1 5.7 91 37-128 13-110 (122)
27 PF05743 UEV: UEV domain; Int 98.6 2.3E-07 5E-12 63.7 6.5 77 17-98 32-116 (121)
28 KOG2391 Vacuolar sorting prote 97.7 0.00026 5.7E-09 55.9 8.0 81 16-101 51-139 (365)
29 PF14462 Prok-E2_E: Prokaryoti 96.6 0.035 7.6E-07 38.1 8.8 89 7-98 13-120 (122)
30 smart00591 RWD domain in RING 95.5 0.34 7.3E-06 31.4 9.5 26 33-58 39-64 (107)
31 PF14457 Prok-E2_A: Prokaryoti 95.5 0.028 6.1E-07 40.4 4.4 61 38-98 56-125 (162)
32 PF05773 RWD: RWD domain; Int 95.3 0.063 1.4E-06 35.1 5.5 47 15-61 27-75 (113)
33 PF08694 UFC1: Ubiquitin-fold 94.4 0.042 9.2E-07 38.6 2.9 54 37-90 77-135 (161)
34 PF14460 Prok-E2_D: Prokaryoti 78.3 3.4 7.3E-05 29.9 3.7 45 58-105 90-137 (175)
35 KOG3357 Uncharacterized conser 77.4 2.6 5.6E-05 29.3 2.6 70 19-88 52-136 (167)
36 PF06113 BRE: Brain and reprod 71.0 29 0.00064 27.9 7.5 66 17-94 53-121 (333)
37 KOG4018 Uncharacterized conser 67.9 5.1 0.00011 30.1 2.5 19 36-54 50-68 (215)
38 KOG0309 Conserved WD40 repeat- 67.8 19 0.00042 32.2 6.2 42 18-59 449-491 (1081)
39 TIGR03737 PRTRC_B PRTRC system 67.2 10 0.00023 28.8 4.1 38 63-104 139-177 (228)
40 cd00421 intradiol_dioxygenase 54.2 21 0.00046 24.9 3.6 26 33-58 64-90 (146)
41 PF09765 WD-3: WD-repeat regio 52.5 18 0.00039 28.4 3.3 64 14-97 122-186 (291)
42 cd03457 intradiol_dioxygenase_ 50.7 25 0.00054 25.8 3.6 26 33-58 85-110 (188)
43 PF03366 YEATS: YEATS family; 49.2 66 0.0014 20.3 5.1 42 18-61 2-43 (84)
44 KOG0177 20S proteasome, regula 48.6 10 0.00022 28.1 1.3 31 68-98 135-165 (200)
45 cd07981 TAF12 TATA Binding Pro 44.8 63 0.0014 19.7 4.3 41 92-132 6-47 (72)
46 cd03459 3,4-PCD Protocatechuat 42.6 41 0.00089 23.9 3.6 25 34-58 72-101 (158)
47 cd05845 Ig2_L1-CAM_like Second 41.5 63 0.0014 20.9 4.1 38 32-72 16-53 (95)
48 PF06113 BRE: Brain and reprod 37.4 47 0.001 26.7 3.5 24 35-58 306-329 (333)
49 KOG4445 Uncharacterized conser 36.5 45 0.00098 26.6 3.2 25 35-59 45-69 (368)
50 KOG2851 Eukaryotic-type DNA pr 33.5 93 0.002 25.5 4.6 32 65-96 332-369 (412)
51 PF04881 Adeno_GP19K: Adenovir 32.5 81 0.0018 21.9 3.6 21 13-33 43-63 (139)
52 KOG0662 Cyclin-dependent kinas 32.3 50 0.0011 24.9 2.7 56 49-104 167-226 (292)
53 PF03847 TFIID_20kDa: Transcri 31.5 1.2E+02 0.0027 18.3 4.4 41 92-132 4-45 (68)
54 PF02563 Poly_export: Polysacc 31.0 69 0.0015 19.8 2.9 36 64-99 34-69 (82)
55 PF09432 THP2: Tho complex sub 29.7 70 0.0015 22.2 2.9 47 78-135 32-79 (132)
56 PF13950 Epimerase_Csub: UDP-g 29.5 57 0.0012 19.3 2.2 19 79-97 37-55 (62)
57 TIGR02423 protocat_alph protoc 28.8 85 0.0018 23.1 3.5 25 33-57 95-124 (193)
58 COG3866 PelB Pectate lyase [Ca 27.1 1.1E+02 0.0024 24.6 3.9 39 19-58 198-240 (345)
59 KOG4690 Uncharacterized conser 26.6 69 0.0015 22.6 2.5 35 99-133 77-119 (165)
60 cd03463 3,4-PCD_alpha Protocat 26.4 1E+02 0.0022 22.6 3.5 24 34-57 92-120 (185)
61 PF00845 Gemini_BL1: Geminivir 25.6 2E+02 0.0044 22.3 5.0 46 15-61 100-154 (276)
62 smart00803 TAF TATA box bindin 24.9 1.2E+02 0.0026 18.1 3.1 28 105-132 19-47 (65)
63 PF04314 DUF461: Protein of un 22.8 1.3E+02 0.0028 19.7 3.3 27 19-45 77-103 (110)
64 KOG1047 Bifunctional leukotrie 22.8 88 0.0019 27.1 2.9 29 30-59 248-279 (613)
65 cd01019 ZnuA Zinc binding prot 22.4 1.3E+02 0.0029 23.1 3.7 46 80-131 124-170 (286)
66 PF11745 DUF3304: Protein of u 22.4 48 0.0011 22.2 1.1 19 68-86 50-68 (118)
67 cd01145 TroA_c Periplasmic bin 21.4 1.1E+02 0.0023 22.2 2.9 45 80-130 111-156 (203)
68 PF12652 CotJB: CotJB protein; 20.4 2E+02 0.0044 18.0 3.6 30 103-132 24-54 (78)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-54 Score=300.66 Aligned_cols=133 Identities=43% Similarity=0.774 Sum_probs=131.0
Q ss_pred CCCCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCCCcC
Q 032708 1 MSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKW 80 (135)
Q Consensus 1 ~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W 80 (135)
+++|++||++.++++|+++|+++|.||.+||||||+|++.|.||++||++||+|+|.|+||||||+.+|+||+|+|++.|
T Consensus 14 ~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~G~IclDILk~~W 93 (148)
T KOG0417|consen 14 LRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSNGRICLDILKDQW 93 (148)
T ss_pred hcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCccccchHHhhhccC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032708 81 SSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 133 (135)
Q Consensus 81 ~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~ 133 (135)
+|+++|.+||++|++||.+||+++|++.++|.+|+.| .+|+++||+||++||+
T Consensus 94 sPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 94 SPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAM 147 (148)
T ss_pred ChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999 9999999999999997
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-52 Score=294.98 Aligned_cols=134 Identities=51% Similarity=0.839 Sum_probs=130.3
Q ss_pred CCCCCCCeEEeecCC-CceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCCCc
Q 032708 1 MSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDK 79 (135)
Q Consensus 1 ~~~~~~gi~~~p~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~ 79 (135)
++++++|+++.|.++ |+++|+++|.||.+||||||+|++.|.||++||++||+|+|.++||||||+.+|+||+++|++.
T Consensus 18 ~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~~G~vCLdIL~~~ 97 (153)
T COG5078 18 QKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDPSGNVCLDILKDR 97 (153)
T ss_pred hcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCCCCCChhHHHhCC
Confidence 467889999999988 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032708 80 WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 134 (135)
Q Consensus 80 W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~~ 134 (135)
|+|+++|++||++|+++|.+||.++|+|.|||++|++| ++|.++||+++++||..
T Consensus 98 WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~~ 153 (153)
T COG5078 98 WSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAEK 153 (153)
T ss_pred CCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999 99999999999999853
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-49 Score=268.56 Aligned_cols=131 Identities=45% Similarity=0.775 Sum_probs=128.2
Q ss_pred CCCCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCCCcC
Q 032708 1 MSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKW 80 (135)
Q Consensus 1 ~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W 80 (135)
|++|+.||++.|.++|+++|.++|+||.+|||+||+|++.|.|+++||.+||.|+|.+.+|||||+.+|.+|+|+|...|
T Consensus 17 qedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~G~iClDiLqNrW 96 (152)
T KOG0419|consen 17 QEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRW 96 (152)
T ss_pred hcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCCCcchHHHHhcCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhh
Q 032708 81 SSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAG 131 (135)
Q Consensus 81 ~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~ 131 (135)
+|+|++.+||.+||+||.+|++++|+|.+||++|+++ .+|.++|++.+.+.
T Consensus 97 sp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqs 148 (152)
T KOG0419|consen 97 SPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQS 148 (152)
T ss_pred CCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999 99999999988763
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=9.5e-49 Score=278.48 Aligned_cols=133 Identities=41% Similarity=0.694 Sum_probs=130.1
Q ss_pred CCCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCCCcCC
Q 032708 2 SGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWS 81 (135)
Q Consensus 2 ~~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~ 81 (135)
+++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+|.||+++|+++|+
T Consensus 16 ~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~G~iCl~iL~~~W~ 95 (152)
T PTZ00390 16 NDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWS 95 (152)
T ss_pred hCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCCCeEECccCcccCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032708 82 SAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 134 (135)
Q Consensus 82 p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~~ 134 (135)
|++|+++||++|+++|.+|++++|+|.+||++|++| ++|.++||+|+++||.-
T Consensus 96 p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~ 149 (152)
T PTZ00390 96 PALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKH 149 (152)
T ss_pred CCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999 99999999999999863
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=2.3e-48 Score=275.23 Aligned_cols=133 Identities=39% Similarity=0.715 Sum_probs=129.8
Q ss_pred CCCCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCCCcC
Q 032708 1 MSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKW 80 (135)
Q Consensus 1 ~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W 80 (135)
++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+.+|.||+++|+++|
T Consensus 14 ~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G~iCl~il~~~W 93 (147)
T PLN00172 14 LKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNGSICLDILRDQW 93 (147)
T ss_pred HhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCCEEEcccCcCCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032708 81 SSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 133 (135)
Q Consensus 81 ~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~ 133 (135)
+|++|+++||.+|+++|.+|++++|+|.+||++|.+| ++|.++||+|+++||.
T Consensus 94 ~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 94 SPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYAT 147 (147)
T ss_pred CCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999 9999999999999983
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-45 Score=257.15 Aligned_cols=131 Identities=37% Similarity=0.640 Sum_probs=124.8
Q ss_pred CCCCCCCeEEeecC-CCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCC--
Q 032708 1 MSGGDLGVSAFPEG-ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ-- 77 (135)
Q Consensus 1 ~~~~~~gi~~~p~~-~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~-- 77 (135)
+++|.+|+++...+ +|+++|.+.|+||++|+|+||.|+..+.||.+||.+||+++|.++||||||+++|++|++||.
T Consensus 18 ~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~~G~vCISILH~p 97 (171)
T KOG0425|consen 18 QEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYEDGDVCISILHPP 97 (171)
T ss_pred hcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCCCCCEEEEeecCC
Confidence 46789999998865 599999999999999999999999999999999999999999999999999999999999993
Q ss_pred -----------CcCCCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhh
Q 032708 78 -----------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAG 131 (135)
Q Consensus 78 -----------~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~ 131 (135)
+.|.|.+|+++||++|.+||.+||.++|+|.+||+.|+++ ++|.++|++++++.
T Consensus 98 gdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s 163 (171)
T KOG0425|consen 98 GDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRS 163 (171)
T ss_pred CCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999 99999999999764
No 7
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-44 Score=247.38 Aligned_cols=132 Identities=39% Similarity=0.635 Sum_probs=127.0
Q ss_pred CCCCCCeEEeecC-----CCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCC
Q 032708 2 SGGDLGVSAFPEG-----ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL 76 (135)
Q Consensus 2 ~~~~~gi~~~p~~-----~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l 76 (135)
++.|-|+++.|.. .|++.|+|.|.|++||+||||.|++++.||++||.+||+++|.+++|||||+.+|.|||++|
T Consensus 18 k~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HPNVypsgtVcLsiL 97 (158)
T KOG0424|consen 18 KDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHPNVYPSGTVCLSIL 97 (158)
T ss_pred hcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCCCcCCCCcEehhhh
Confidence 6788999999963 47999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCc--CCCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032708 77 QDK--WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 133 (135)
Q Consensus 77 ~~~--W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~ 133 (135)
.++ |+|+.||.+||.+||.||.+||+.+|+|.||..+|.+| .+|+++||.++++||-
T Consensus 98 ~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~ 157 (158)
T KOG0424|consen 98 NEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK 157 (158)
T ss_pred ccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence 865 99999999999999999999999999999999999999 9999999999999985
No 8
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-43 Score=250.35 Aligned_cols=130 Identities=36% Similarity=0.615 Sum_probs=126.7
Q ss_pred CCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccC-CCceeccCCCCcCCCc
Q 032708 5 DLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSSA 83 (135)
Q Consensus 5 ~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~W~p~ 83 (135)
..||.+...++|+.+.++.|.||+|||||||+|.+.|.+|++|||+||+|+|.|+||||||.+ +|.||+|+|++.|.++
T Consensus 23 q~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnVSs~tGaICLDilkd~Wa~s 102 (200)
T KOG0418|consen 23 QAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNVSSQTGAICLDILKDQWAAS 102 (200)
T ss_pred hcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCCCcccccchhhhhhcccchh
Confidence 468999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred ccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032708 84 YDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 134 (135)
Q Consensus 84 ~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~~ 134 (135)
+|++++|++||++|..|++.+|.+..+|+.|.++ +.|.+.||.|+.+||-.
T Consensus 103 lTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~ 154 (200)
T KOG0418|consen 103 LTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGG 154 (200)
T ss_pred hhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999 99999999999999854
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=4.9e-43 Score=245.77 Aligned_cols=127 Identities=50% Similarity=0.873 Sum_probs=117.2
Q ss_pred CCCCCCeEEeecCC-CceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCCC-c
Q 032708 2 SGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQD-K 79 (135)
Q Consensus 2 ~~~~~gi~~~p~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~-~ 79 (135)
++++.|+.+.+.++ |+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+++||||+.+|.||+++|.. .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~~ 90 (140)
T PF00179_consen 11 KNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGRICLDILNPES 90 (140)
T ss_dssp HSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSBBGHGGGTTTT
T ss_pred hCCCCCEEEEECCCCChheEEEEEeccCccceecccccccccccccccccccccccccccccccccccccchhhhhhccc
Confidence 57889999999886 999999999999999999999999999999999999999999999999999999999999985 5
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHH
Q 032708 80 WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQY 128 (135)
Q Consensus 80 W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~ 128 (135)
|+|++++.+||.+|+++|.+|+.++|+|.+|+++|+++ ++|.++||+|.
T Consensus 91 W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 91 WSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp C-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred CCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999 99999999984
No 10
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=5e-42 Score=241.02 Aligned_cols=128 Identities=50% Similarity=0.883 Sum_probs=123.9
Q ss_pred CCCCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCCCc-
Q 032708 1 MSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDK- 79 (135)
Q Consensus 1 ~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~- 79 (135)
++++++|+++.++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.++++||||+.+|.||++++...
T Consensus 12 ~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~icl~~l~~~~ 91 (141)
T cd00195 12 KKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGKICLSILKTHG 91 (141)
T ss_pred HhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCCCchhhcCCCC
Confidence 3677899999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHH
Q 032708 80 WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQY 128 (135)
Q Consensus 80 W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~ 128 (135)
|+|++++++||.+|+++|.+|+.++|+|.+||.+|+++ ++|.++||+++
T Consensus 92 W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 92 WSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred cCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999 99999999874
No 11
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=1.2e-41 Score=240.16 Aligned_cols=131 Identities=52% Similarity=0.889 Sum_probs=126.7
Q ss_pred CCCCCCeEEeecCC-CceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCC-Cc
Q 032708 2 SGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ-DK 79 (135)
Q Consensus 2 ~~~~~gi~~~p~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~-~~ 79 (135)
+++++|+++.+.++ |+++|+++|.||++|||+||.|++.|.||++||++||+|+|.++++||||+++|.||++++. ++
T Consensus 12 ~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G~icl~~l~~~~ 91 (145)
T smart00212 12 KDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSGEICLDILKQEK 91 (145)
T ss_pred hCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCCCEehhhcCCCC
Confidence 57788999999875 99999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032708 80 WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE 132 (135)
Q Consensus 80 W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a 132 (135)
|+|++++++||.+|+++|.+|+.++|+|.+|+++|.++ ++|.++|++++++++
T Consensus 92 W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 92 WSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999 999999999999875
No 12
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-42 Score=239.05 Aligned_cols=129 Identities=63% Similarity=1.102 Sum_probs=124.1
Q ss_pred CCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCCCcCCC
Q 032708 3 GGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSS 82 (135)
Q Consensus 3 ~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~p 82 (135)
...+||+++|+++|++.|.++|.||.+|+|+|-.|++.+.||.+||++||+|+|+|++||||||..|.||||||++.|+.
T Consensus 44 s~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~GnIcLDILkdKWSa 123 (175)
T KOG0421|consen 44 SNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSGNICLDILKDKWSA 123 (175)
T ss_pred cCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccccccchHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhchHHHHHHHHHHHHhh
Q 032708 83 AYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQYFAG 131 (135)
Q Consensus 83 ~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~f~~~~~~~~~~~ 131 (135)
.+++++||++||+||-+||.++|+|..||+++.+.++|++.+.+..++.
T Consensus 124 ~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~d~~eykk~l~~~Y~~~ 172 (175)
T KOG0421|consen 124 VYDVRTILLSIQSLLGEPNNSSPLNAQAAELWSDQEEYKKYLEALYKEI 172 (175)
T ss_pred HHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhcCHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999994499999999888764
No 13
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-40 Score=223.14 Aligned_cols=130 Identities=35% Similarity=0.665 Sum_probs=124.7
Q ss_pred CCCCCCeEEeec-CCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCC---
Q 032708 2 SGGDLGVSAFPE-GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ--- 77 (135)
Q Consensus 2 ~~~~~gi~~~p~-~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~--- 77 (135)
.++|+||.+.|. ++|+++|.|.|.||++|+|+||+|..++.||.+||.+||+++|...+|||||+.+|+||+++|.
T Consensus 18 ~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy~dG~VCISILHaPG 97 (165)
T KOG0426|consen 18 LNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPG 97 (165)
T ss_pred cCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCcccCCCeEEEEEeeCCC
Confidence 589999999996 6899999999999999999999999999999999999999999999999999999999999983
Q ss_pred ----------CcCCCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhh
Q 032708 78 ----------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAG 131 (135)
Q Consensus 78 ----------~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~ 131 (135)
+.|+|.++++.||+++.+||.+||.++.+|.+|+.+++++ ++|.+.|+..++|.
T Consensus 98 DDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvrKt 162 (165)
T KOG0426|consen 98 DDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVRKT 162 (165)
T ss_pred CCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999999999999999 99999999998763
No 14
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-39 Score=225.60 Aligned_cols=129 Identities=33% Similarity=0.591 Sum_probs=122.3
Q ss_pred CCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccC-CCceeccCCCCcCCCcc
Q 032708 6 LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSSAY 84 (135)
Q Consensus 6 ~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~W~p~~ 84 (135)
++..|...++++.++++.+.||.+|||+||++++++.+|++||++.|.|.|.++||||||++ +|.||||.++..|+|.+
T Consensus 18 s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGsVCLDViNQtWSp~y 97 (189)
T KOG0416|consen 18 SDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGSVCLDVINQTWSPLY 97 (189)
T ss_pred cCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCccHHHHHhhhhhHHH
Confidence 34567777888999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred cHHHHHHH-HHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032708 85 DCRTILLS-IQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 134 (135)
Q Consensus 85 ~i~~il~~-i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~~ 134 (135)
.+..|+.. |-+||..||+.+|+|.+||.+|.++ ++|.++||+++++||.+
T Consensus 98 DL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~ 149 (189)
T KOG0416|consen 98 DLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATP 149 (189)
T ss_pred HHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcCh
Confidence 99998877 6788999999999999999999999 99999999999999986
No 15
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-37 Score=217.05 Aligned_cols=130 Identities=32% Similarity=0.581 Sum_probs=118.1
Q ss_pred CCCCeEEee-c-CCCce--EEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCCCc
Q 032708 4 GDLGVSAFP-E-GESIF--TWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDK 79 (135)
Q Consensus 4 ~~~gi~~~p-~-~~~~~--~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~ 79 (135)
-|++++... . .+++. +.+++|. |..+.|+||.|.|.+.+|+.||+.||+|+|+|++|||||+.+|.|||+||+++
T Consensus 42 Lp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~~GnVCLnILRed 120 (184)
T KOG0420|consen 42 LPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGNVCLNILRED 120 (184)
T ss_pred CCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCCcchHHHHHHHhc
Confidence 455665221 1 23333 5999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032708 80 WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 134 (135)
Q Consensus 80 W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~~ 134 (135)
|+|+.+|.+|+.+|+.||.+|+++||+|.+||.+++++ +.|...||.....++.+
T Consensus 121 W~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~v~ 176 (184)
T KOG0420|consen 121 WRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGCVG 176 (184)
T ss_pred CccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCccC
Confidence 99999999999999999999999999999999999999 99999999999988765
No 16
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-36 Score=206.20 Aligned_cols=123 Identities=28% Similarity=0.619 Sum_probs=117.6
Q ss_pred eecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCC-CcCCCcccHHHH
Q 032708 11 FPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ-DKWSSAYDCRTI 89 (135)
Q Consensus 11 ~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~-~~W~p~~~i~~i 89 (135)
..+++|++.|++.|. |.+-||..|.|+++|.||.+|||+||+|.|.|+|||||||+.|.+|+.++. ++|.|+.++.+|
T Consensus 26 ~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe~gqvClPiis~EnWkP~T~teqV 104 (153)
T KOG0422|consen 26 EVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDEKGQVCLPIISAENWKPATRTEQV 104 (153)
T ss_pred hcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCCCCceeeeeeecccccCcccHHHH
Confidence 345789999999999 899999999999999999999999999999999999999999999999985 889999999999
Q ss_pred HHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032708 90 LLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 134 (135)
Q Consensus 90 l~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~~ 134 (135)
|++|.+++.+|+++.|++.|+|..|.+| ..|.++|.++|++|+-+
T Consensus 105 lqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e~ 150 (153)
T KOG0422|consen 105 LQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSEK 150 (153)
T ss_pred HHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcCc
Confidence 9999999999999999999999999999 99999999999999843
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-36 Score=211.43 Aligned_cols=132 Identities=32% Similarity=0.535 Sum_probs=128.4
Q ss_pred CCCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCCCcCC
Q 032708 2 SGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWS 81 (135)
Q Consensus 2 ~~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~ 81 (135)
.+||.||.|.+.++|+....+.|.||.||||++|.|++.+.+..+||.+||+-+|+|+||||||..+|+||.+.|+.+|+
T Consensus 24 ~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNGEICVNtLKkDW~ 103 (223)
T KOG0423|consen 24 ESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANGEICVNTLKKDWN 103 (223)
T ss_pred cCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCceehhhhhhcccC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032708 82 SAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 133 (135)
Q Consensus 82 p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~ 133 (135)
|+++|+.||..|+.||..|++++.+|.+|.+++.++ ++|.++||-++.=+|-
T Consensus 104 p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~ 156 (223)
T KOG0423|consen 104 PSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAK 156 (223)
T ss_pred cccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999 9999999999987664
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.7e-27 Score=160.44 Aligned_cols=106 Identities=34% Similarity=0.662 Sum_probs=97.3
Q ss_pred CCCCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecc-cccccccCCCceeccCCCCc
Q 032708 1 MSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM-CFHPNVDQYGNICLDILQDK 79 (135)
Q Consensus 1 ~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~-i~Hpni~~~G~icl~~l~~~ 79 (135)
|.+||+|+... ..+|+.+|.+-+.|-+||.|+|.+|.+.+.||+.||+..|.|.|..+ ..||+|+.+|.|||++|.++
T Consensus 28 q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYSNGHICL~iL~d~ 106 (161)
T KOG0427|consen 28 QNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYSNGHICLDILYDS 106 (161)
T ss_pred hcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceecCCeEEEEeeccc
Confidence 56899999888 77899999999999999999999999999999999999999999987 46999999999999999999
Q ss_pred CCCcccHHHHHHHHHHhhc-CCCCCCccc
Q 032708 80 WSSAYDCRTILLSIQSLLG-EPNPESPLN 107 (135)
Q Consensus 80 W~p~~~i~~il~~i~~ll~-~p~~~~p~n 107 (135)
|+|++++.+|.++|.+||+ ......|.+
T Consensus 107 WsPAmsv~SvClSIlSMLSSs~eKqrP~D 135 (161)
T KOG0427|consen 107 WSPAMSVQSVCLSILSMLSSSKEKQRPTD 135 (161)
T ss_pred CCcchhhHHHHHHHHHHHccCccccCCCc
Confidence 9999999999999999998 444455543
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.7e-26 Score=168.75 Aligned_cols=97 Identities=30% Similarity=0.515 Sum_probs=88.7
Q ss_pred CCCCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCC---
Q 032708 1 MSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ--- 77 (135)
Q Consensus 1 ~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~--- 77 (135)
+++|+++|.+.|..+|+++||.+|.||++|||+||.|+.+|.||++||++||.|+++|+-- .+-.+-++||++.+
T Consensus 18 ~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNG--RFktntRLCLSiSDfHP 95 (244)
T KOG0894|consen 18 CKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNG--RFKTNTRLCLSISDFHP 95 (244)
T ss_pred HhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCC--ceecCceEEEeccccCc
Confidence 5799999999999999999999999999999999999999999999999999999999733 23345799998875
Q ss_pred CcCCCcccHHHHHHHHHHhhcC
Q 032708 78 DKWSSAYDCRTILLSIQSLLGE 99 (135)
Q Consensus 78 ~~W~p~~~i~~il~~i~~ll~~ 99 (135)
+.|+|++++.+||.+|.++|.+
T Consensus 96 dsWNP~WsVStILtGLlSFM~e 117 (244)
T KOG0894|consen 96 DSWNPGWSVSTILTGLLSFMTE 117 (244)
T ss_pred CcCCCcccHHHHHHHHHHHHhc
Confidence 8899999999999999999984
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.3e-26 Score=166.32 Aligned_cols=129 Identities=24% Similarity=0.413 Sum_probs=118.9
Q ss_pred CCCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCC--CCCeeEEecccccccccC-CCceeccCCCC
Q 032708 2 SGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF--KPPQVKFETMCFHPNVDQ-YGNICLDILQD 78 (135)
Q Consensus 2 ~~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~--~pP~v~f~t~i~Hpni~~-~G~icl~~l~~ 78 (135)
+++.+||+|+|+-.|-+.|.++|++.. +.|.||+|+|+|.+|++||. .-|+|.|.+.++||+|.+ ++.+|++....
T Consensus 33 ~ekL~gIyviPSyan~l~WFGViFvr~-GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~skeLdl~raf~ 111 (258)
T KOG0429|consen 33 REKLDGIYVIPSYANKLLWFGVIFVRK-GIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSKELDLNRAFP 111 (258)
T ss_pred hccCCceEEcccccccceEEEEEEEec-ccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCccceeHhhhhh
Confidence 467899999999999999999999755 58999999999999999995 689999999999999999 99999988888
Q ss_pred cCCCc-ccHHHHHHHHHHhhcCCCCCCc-c-cHHHHHHhhch-HHHHHHHHHHHHhh
Q 032708 79 KWSSA-YDCRTILLSIQSLLGEPNPESP-L-NSYAAALLNNK-EDYRKMVQKQYFAG 131 (135)
Q Consensus 79 ~W~p~-~~i~~il~~i~~ll~~p~~~~p-~-n~~a~~~~~~~-~~f~~~~~~~~~~~ 131 (135)
.|+.. .+|++||.+||.+|++|+...+ + |.+|+.+|+++ ++|.++|+++++..
T Consensus 112 eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~s 168 (258)
T KOG0429|consen 112 EWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKAS 168 (258)
T ss_pred hhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 89977 4899999999999999998776 4 99999999999 99999999999764
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1e-20 Score=141.10 Aligned_cols=99 Identities=29% Similarity=0.532 Sum_probs=88.4
Q ss_pred CCCCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCC---
Q 032708 1 MSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ--- 77 (135)
Q Consensus 1 ~~~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~--- 77 (135)
+++|...+.+.|.++|+++|+.+|.||.||-|+||+|+.+|.||.+||++||.+..+|+-. .+..+-+|||++..
T Consensus 23 l~~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNG--RFE~nkKiCLSISgyHP 100 (314)
T KOG0428|consen 23 LKDPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNG--RFEVNKKICLSISGYHP 100 (314)
T ss_pred hcCchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCC--ceeeCceEEEEecCCCc
Confidence 4678888899999999999999999999999999999999999999999999999998744 34447789999885
Q ss_pred CcCCCcccHHHHHHHHHHhhc-CCC
Q 032708 78 DKWSSAYDCRTILLSIQSLLG-EPN 101 (135)
Q Consensus 78 ~~W~p~~~i~~il~~i~~ll~-~p~ 101 (135)
+.|.|+++|++.|++|..+|- .|+
T Consensus 101 EtWqPSWSiRTALlAlIgFmPt~p~ 125 (314)
T KOG0428|consen 101 ETWQPSWSIRTALLALIGFMPTKPE 125 (314)
T ss_pred cccCcchhHHHHHHHHHccccCCCC
Confidence 789999999999999999885 454
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.1e-18 Score=150.42 Aligned_cols=104 Identities=27% Similarity=0.483 Sum_probs=95.1
Q ss_pred CCCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecc--cccccccCCCceeccCCC--
Q 032708 2 SGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM--CFHPNVDQYGNICLDILQ-- 77 (135)
Q Consensus 2 ~~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~Hpni~~~G~icl~~l~-- 77 (135)
.+.|.||+|...++.+..+.++|.|+.||||..|.|.|.+.||.+||..||.|...+. .++||.+++|+||+++|+
T Consensus 865 ~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~s~l~tw 944 (1101)
T KOG0895|consen 865 LSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCLSLLNTW 944 (1101)
T ss_pred ccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccccceehhhhccc
Confidence 4568899999999999999999999999999999999999999999999999999875 789999999999999995
Q ss_pred -----CcCCCcccHHHHHHHHHHhhc--CCCCCCc
Q 032708 78 -----DKWSSAYDCRTILLSIQSLLG--EPNPESP 105 (135)
Q Consensus 78 -----~~W~p~~~i~~il~~i~~ll~--~p~~~~p 105 (135)
+-|+|+-++.++|.+||.|+. +|.++.+
T Consensus 945 ~g~~~e~w~~~s~~lq~l~s~q~l~l~~~py~ne~ 979 (1101)
T KOG0895|consen 945 HGRGNEVWNPSSSILQVLVSIQGLVLNEEPYFNEA 979 (1101)
T ss_pred cCCCccccCcchhHHHHHHHhhhhhcccccccCcc
Confidence 569999999999999999986 5665554
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=5.7e-15 Score=127.80 Aligned_cols=98 Identities=30% Similarity=0.486 Sum_probs=92.2
Q ss_pred CCCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecc---cccccccCCCceeccCCC-
Q 032708 2 SGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM---CFHPNVDQYGNICLDILQ- 77 (135)
Q Consensus 2 ~~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~---i~Hpni~~~G~icl~~l~- 77 (135)
++.|+|+.+.|.+.+....++.|.||.||||++|+|.|.|.||..||..||.+.+++. .+.||.+.+|+||+++|.
T Consensus 296 kdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlYn~GKVcLslLgT 375 (1101)
T KOG0895|consen 296 KDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLYNDGKVCLSLLGT 375 (1101)
T ss_pred ccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcccCceEEeeeeee
Confidence 5789999999999999999999999999999999999999999999999999999986 789999999999999883
Q ss_pred ------CcCCCc-ccHHHHHHHHHHhhcC
Q 032708 78 ------DKWSSA-YDCRTILLSIQSLLGE 99 (135)
Q Consensus 78 ------~~W~p~-~~i~~il~~i~~ll~~ 99 (135)
+.|+|. .++.++|.+||.++.+
T Consensus 376 wtg~~~e~wtp~~~sl~qvL~sIQ~Li~~ 404 (1101)
T KOG0895|consen 376 WTGSRREKWTPNGSSLLQVLESIQGLILN 404 (1101)
T ss_pred cccccccCCCccccchhhhhhhhhhhhcc
Confidence 679998 7999999999999974
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.1e-13 Score=94.92 Aligned_cols=82 Identities=28% Similarity=0.487 Sum_probs=73.2
Q ss_pred ceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccC-CCceeccCC--CCcCCCcccHHHHHHHH
Q 032708 17 IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDIL--QDKWSSAYDCRTILLSI 93 (135)
Q Consensus 17 ~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l--~~~W~p~~~i~~il~~i 93 (135)
+..|.++|.||+.|+||+.+|.++|.+.++||..||.|+|.+++--..|+. +|.|.-..+ -.+|+..++++.+|..+
T Consensus 38 l~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~l 117 (138)
T KOG0896|consen 38 LTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNSSNGVVDPRDITVLARWQRSYSIKMVLGQL 117 (138)
T ss_pred EeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccccCCCccCccccchhhcccccchhhHHHHhh
Confidence 468999999999999999999999999999999999999999999999888 777764322 27899999999999999
Q ss_pred HHhhc
Q 032708 94 QSLLG 98 (135)
Q Consensus 94 ~~ll~ 98 (135)
+.++.
T Consensus 118 r~~m~ 122 (138)
T KOG0896|consen 118 RKEMM 122 (138)
T ss_pred hHHHH
Confidence 97665
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.74 E-value=4.9e-08 Score=67.90 Aligned_cols=67 Identities=31% Similarity=0.607 Sum_probs=60.8
Q ss_pred CCCEEEEEEEcCCCCCCCCCeeEEeccc---ccccccCCCceec---cCCCCcCCCcccHHHHHHHHHHhhcC
Q 032708 33 EGLSYKLSLRFPLDYPFKPPQVKFETMC---FHPNVDQYGNICL---DILQDKWSSAYDCRTILLSIQSLLGE 99 (135)
Q Consensus 33 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i---~Hpni~~~G~icl---~~l~~~W~p~~~i~~il~~i~~ll~~ 99 (135)
.|+.+.++|.+|++||..||.|....+. +-|||+.+|.+|+ ...-+.|.|...+.++|...+.+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999988654 6899999999999 66678999999999999999999983
No 26
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=3.7e-08 Score=66.05 Aligned_cols=91 Identities=25% Similarity=0.436 Sum_probs=67.3
Q ss_pred EEEEEEcCCCCCCCCCeeEEecccc-cccccCCCceeccCCC-CcCCCcccHHHHHHHHHHhhcCCC--CCCcccHHHHH
Q 032708 37 YKLSLRFPLDYPFKPPQVKFETMCF-HPNVDQYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPN--PESPLNSYAAA 112 (135)
Q Consensus 37 f~~~i~fp~~YP~~pP~v~f~t~i~-Hpni~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~--~~~p~n~~a~~ 112 (135)
.-+.+.|+++||+.||.+|-..+.- ---|-.+|.||+.++. ++|+.+++++.++++|..++.... ...+++.+..
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk- 91 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK- 91 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh-
Confidence 3466789999999999998665533 2233348999999996 789999999999999999998654 4566655544
Q ss_pred Hhhch---HHHHHHHHHHH
Q 032708 113 LLNNK---EDYRKMVQKQY 128 (135)
Q Consensus 113 ~~~~~---~~f~~~~~~~~ 128 (135)
+|... +.|+..++-..
T Consensus 92 ~~s~~qa~~sfksLv~~he 110 (122)
T KOG0897|consen 92 LYSHSQAQQSFKSLVQIHE 110 (122)
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 55443 67777766554
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.57 E-value=2.3e-07 Score=63.66 Aligned_cols=77 Identities=25% Similarity=0.567 Sum_probs=54.0
Q ss_pred ceEEEEEEEcCCCCCCCCCEE--EEEEEcCCCCCCCCCeeEEecccc-----cccccCCCceeccCCCCcCCC-cccHHH
Q 032708 17 IFTWIGTIEGGKGTMYEGLSY--KLSLRFPLDYPFKPPQVKFETMCF-----HPNVDQYGNICLDILQDKWSS-AYDCRT 88 (135)
Q Consensus 17 ~~~w~~~i~Gp~~tpy~gg~f--~~~i~fp~~YP~~pP~v~f~t~i~-----Hpni~~~G~icl~~l~~~W~p-~~~i~~ 88 (135)
+....++|. -.|.|..| .+.|.+|.+||.+||.+....... +.+|+.+|+|.+..| ++|.+ ..++.+
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~~ 106 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLVD 106 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HHH
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHHH
Confidence 445555554 25788888 467779999999999998764322 449999999999988 57887 778999
Q ss_pred HHHHHHHhhc
Q 032708 89 ILLSIQSLLG 98 (135)
Q Consensus 89 il~~i~~ll~ 98 (135)
++..+++.|.
T Consensus 107 lv~~l~~~F~ 116 (121)
T PF05743_consen 107 LVQELQAVFS 116 (121)
T ss_dssp HHHHHHHCCC
T ss_pred HHHHHHHHHh
Confidence 9999999886
No 28
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.00026 Score=55.90 Aligned_cols=81 Identities=23% Similarity=0.479 Sum_probs=62.2
Q ss_pred CceEEEEEEEcCCCCCCCCCEEE--EEEEcCCCCCCCCCeeEEecc-----cccccccCCCceeccCCCCcCC-CcccHH
Q 032708 16 SIFTWIGTIEGGKGTMYEGLSYK--LSLRFPLDYPFKPPQVKFETM-----CFHPNVDQYGNICLDILQDKWS-SAYDCR 87 (135)
Q Consensus 16 ~~~~w~~~i~Gp~~tpy~gg~f~--~~i~fp~~YP~~pP~v~f~t~-----i~Hpni~~~G~icl~~l~~~W~-p~~~i~ 87 (135)
+++...++|. .+|.|.+|. +.|.+.+.||..||.+..... -.|-+|+.+|.|.|..|. +|. |+.++.
T Consensus 51 ~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh-~W~~pssdLv 125 (365)
T KOG2391|consen 51 LLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH-NWDPPSSDLV 125 (365)
T ss_pred chhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc-cCCCccchHH
Confidence 3455555554 478888776 566789999999999866531 238999999999999994 687 667899
Q ss_pred HHHHHHHHhhcCCC
Q 032708 88 TILLSIQSLLGEPN 101 (135)
Q Consensus 88 ~il~~i~~ll~~p~ 101 (135)
.++..|.+.|.++.
T Consensus 126 ~Liq~l~a~f~~~p 139 (365)
T KOG2391|consen 126 GLIQELIAAFSEDP 139 (365)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999998543
No 29
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.56 E-value=0.035 Score=38.11 Aligned_cols=89 Identities=19% Similarity=0.245 Sum_probs=57.4
Q ss_pred CeEEeecCCCceEEEEEEEc--CCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCce--ecc--------
Q 032708 7 GVSAFPEGESIFTWIGTIEG--GKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNI--CLD-------- 74 (135)
Q Consensus 7 gi~~~p~~~~~~~w~~~i~G--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~i--cl~-------- 74 (135)
|+..+...+.-..|.+ |.| .+.+.|.+..-.+.|.+|..||..+|.+-+..+-.... ..|.| |-+
T Consensus 13 g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G~ 89 (122)
T PF14462_consen 13 GLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDGR 89 (122)
T ss_pred CceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCCe
Confidence 4455554444455654 555 46667999999999999999999998776654422111 01222 221
Q ss_pred ------CCCCcCCCcc-cHHHHHHHHHHhhc
Q 032708 75 ------ILQDKWSSAY-DCRTILLSIQSLLG 98 (135)
Q Consensus 75 ------~l~~~W~p~~-~i~~il~~i~~ll~ 98 (135)
.-...|+|+. +|.+.|..|...|.
T Consensus 90 ~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 90 TWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred eeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 1135688886 78888888887764
No 30
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=95.51 E-value=0.34 Score=31.36 Aligned_cols=26 Identities=23% Similarity=0.542 Sum_probs=21.9
Q ss_pred CCCEEEEEEEcCCCCCCCCCeeEEec
Q 032708 33 EGLSYKLSLRFPLDYPFKPPQVKFET 58 (135)
Q Consensus 33 ~gg~f~~~i~fp~~YP~~pP~v~f~t 58 (135)
..-.+.+.+.||++||..+|.|.+.+
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~ 64 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLN 64 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEEC
Confidence 34568899999999999999998765
No 31
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.46 E-value=0.028 Score=40.43 Aligned_cols=61 Identities=21% Similarity=0.391 Sum_probs=48.8
Q ss_pred EEEEEcCCCCCCCCCeeEEecccc---cccccCC-----CceeccCCC-CcCCCcccHHHHHHHHHHhhc
Q 032708 38 KLSLRFPLDYPFKPPQVKFETMCF---HPNVDQY-----GNICLDILQ-DKWSSAYDCRTILLSIQSLLG 98 (135)
Q Consensus 38 ~~~i~fp~~YP~~pP~v~f~t~i~---Hpni~~~-----G~icl~~l~-~~W~p~~~i~~il~~i~~ll~ 98 (135)
.+.|.|+.+||..+|.|.++.+.| +||+... ..+|+--.. ..|.+..++..+|..|..-|.
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~ 125 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLR 125 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHH
Confidence 367899999999999887776543 5777775 678985443 579999999999999998876
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.28 E-value=0.063 Score=35.14 Aligned_cols=47 Identities=19% Similarity=0.184 Sum_probs=28.9
Q ss_pred CCceEEEEEEEc--CCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccc
Q 032708 15 ESIFTWIGTIEG--GKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF 61 (135)
Q Consensus 15 ~~~~~w~~~i~G--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 61 (135)
.+...+.+.+.+ ...+.-....+.+.+.||++||..+|.|...+...
T Consensus 27 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~~ 75 (113)
T PF05773_consen 27 KSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPKN 75 (113)
T ss_dssp SSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEESS
T ss_pred CCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCCC
Confidence 344456666621 23334456689999999999999999998766433
No 33
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=94.41 E-value=0.042 Score=38.60 Aligned_cols=54 Identities=20% Similarity=0.469 Sum_probs=24.2
Q ss_pred EEEEEEcCCCCCCCCCeeEEecccc-cccccCCCceeccCCC-CcC---CCcccHHHHH
Q 032708 37 YKLSLRFPLDYPFKPPQVKFETMCF-HPNVDQYGNICLDILQ-DKW---SSAYDCRTIL 90 (135)
Q Consensus 37 f~~~i~fp~~YP~~pP~v~f~t~i~-Hpni~~~G~icl~~l~-~~W---~p~~~i~~il 90 (135)
|.+++.+|..||..||.|..-.--- -.-.+..|+||++.-. .-| .|.++|...|
T Consensus 77 F~~eFdIP~tYP~t~pEi~lPeLdGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 77 FDLEFDIPVTYPTTAPEIALPELDGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp EEEEEE--TTTTTS----B-GGGTTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred EeeecCCCccCCCCCcceeccccCCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 4456667999999999997642100 1123358999997664 346 4566766543
No 34
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=78.32 E-value=3.4 Score=29.87 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=26.9
Q ss_pred ccccc---ccccCCCceeccCCCCcCCCcccHHHHHHHHHHhhcCCCCCCc
Q 032708 58 TMCFH---PNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESP 105 (135)
Q Consensus 58 t~i~H---pni~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p 105 (135)
|+.|| +||..+|.||+.... .|.......+..+...|.+-....+
T Consensus 90 T~Ly~aPf~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~ftH~ 137 (175)
T PF14460_consen 90 TPLYHAPFFNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFNSPFTHP 137 (175)
T ss_pred CeeEeCCccccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCCccCC
Confidence 44454 499999999997643 2444445556777665553333333
No 35
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.39 E-value=2.6 Score=29.34 Aligned_cols=70 Identities=19% Similarity=0.516 Sum_probs=42.1
Q ss_pred EEEEEEEcCCCCCCCCCE----------EEEEEEcCCCCCCCCCeeEEeccc-ccccccCCCceecc-CCCCcCC---Cc
Q 032708 19 TWIGTIEGGKGTMYEGLS----------YKLSLRFPLDYPFKPPQVKFETMC-FHPNVDQYGNICLD-ILQDKWS---SA 83 (135)
Q Consensus 19 ~w~~~i~Gp~~tpy~gg~----------f~~~i~fp~~YP~~pP~v~f~t~i-~Hpni~~~G~icl~-~l~~~W~---p~ 83 (135)
.|.-.=.-+.||-|-|.+ |.+++.+|-.||..+|.+..-.-- ----.+..|.||+. ..+.-|. |.
T Consensus 52 dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpeldgktakmyrggkiclt~hfkplwarn~pk 131 (167)
T KOG3357|consen 52 DWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPELDGKTAKMYRGGKICLTDHFKPLWARNVPK 131 (167)
T ss_pred cceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccccCchhhhhhcCceEeeccccchhhhhcCcc
Confidence 344344557888887753 445556799999999998653110 00122358999984 4456675 44
Q ss_pred ccHHH
Q 032708 84 YDCRT 88 (135)
Q Consensus 84 ~~i~~ 88 (135)
++|..
T Consensus 132 fgiah 136 (167)
T KOG3357|consen 132 FGIAH 136 (167)
T ss_pred hhHHH
Confidence 45544
No 36
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=70.99 E-value=29 Score=27.86 Aligned_cols=66 Identities=23% Similarity=0.324 Sum_probs=44.7
Q ss_pred ceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEe-cccccccccCCCceeccCCCCcCCCcc--cHHHHHHHH
Q 032708 17 IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFE-TMCFHPNVDQYGNICLDILQDKWSSAY--DCRTILLSI 93 (135)
Q Consensus 17 ~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~-t~i~Hpni~~~G~icl~~l~~~W~p~~--~i~~il~~i 93 (135)
...+++.| ||.|...+-+|.|...+|..||-+.|. ..-|+|.... +..| .+|.+.- .+..++..|
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s~-----l~~L-~~Wd~~dp~~Ll~li~EL 120 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPSK-----LPSL-VNWDPSDPNCLLNLISEL 120 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChhh-----cchh-hcCCCCCchHHHHHHHHH
Confidence 34555555 589999999999999999999999996 4458874321 1222 4687663 344444444
Q ss_pred H
Q 032708 94 Q 94 (135)
Q Consensus 94 ~ 94 (135)
.
T Consensus 121 ~ 121 (333)
T PF06113_consen 121 R 121 (333)
T ss_pred H
Confidence 4
No 37
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=67.87 E-value=5.1 Score=30.08 Aligned_cols=19 Identities=26% Similarity=0.579 Sum_probs=18.1
Q ss_pred EEEEEEEcCCCCCCCCCee
Q 032708 36 SYKLSLRFPLDYPFKPPQV 54 (135)
Q Consensus 36 ~f~~~i~fp~~YP~~pP~v 54 (135)
.+.+.+.++++||..+|.+
T Consensus 50 ~~~l~~s~tEnYPDe~Pli 68 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLI 68 (215)
T ss_pred cEEEEEEccCCCCCCCcce
Confidence 7889999999999999999
No 38
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=67.75 E-value=19 Score=32.21 Aligned_cols=42 Identities=17% Similarity=0.362 Sum_probs=28.4
Q ss_pred eEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCC-CCCeeEEecc
Q 032708 18 FTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF-KPPQVKFETM 59 (135)
Q Consensus 18 ~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~-~pP~v~f~t~ 59 (135)
..-.+.+-||-..--.....++.|.||.+||. .+|.++|..+
T Consensus 449 Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 449 RSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred ceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 44556667764433222344788899999998 5799998753
No 39
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=67.23 E-value=10 Score=28.76 Aligned_cols=38 Identities=13% Similarity=0.065 Sum_probs=26.4
Q ss_pred ccccCCCceeccCCCCcCCCcc-cHHHHHHHHHHhhcCCCCCC
Q 032708 63 PNVDQYGNICLDILQDKWSSAY-DCRTILLSIQSLLGEPNPES 104 (135)
Q Consensus 63 pni~~~G~icl~~l~~~W~p~~-~i~~il~~i~~ll~~p~~~~ 104 (135)
.||+.+|.||+.... .|.. ++.+ +......|.+-.+..
T Consensus 139 fNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~S~FTH 177 (228)
T TIGR03737 139 FNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFSSRFTH 177 (228)
T ss_pred CccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhCCcccC
Confidence 399999999997664 4554 5666 888888777544433
No 40
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=54.19 E-value=21 Score=24.85 Aligned_cols=26 Identities=27% Similarity=0.571 Sum_probs=22.8
Q ss_pred CCCEEEEEEEcCCCCC-CCCCeeEEec
Q 032708 33 EGLSYKLSLRFPLDYP-FKPPQVKFET 58 (135)
Q Consensus 33 ~gg~f~~~i~fp~~YP-~~pP~v~f~t 58 (135)
+.|.|.|.-.+|-.|| ..||.|.|.-
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 3588999999999999 9999998863
No 41
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=52.49 E-value=18 Score=28.40 Aligned_cols=64 Identities=22% Similarity=0.388 Sum_probs=40.1
Q ss_pred CCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCCCcCCC-cccHHHHHHH
Q 032708 14 GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSS-AYDCRTILLS 92 (135)
Q Consensus 14 ~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~p-~~~i~~il~~ 92 (135)
++++...++.+..- .....++|.++.+||.++|.+..--++ .+...|.+ ..++.+++..
T Consensus 122 d~~ls~i~l~~~D~------~R~H~l~l~l~~~yp~~~p~~~~~~P~--------------~~~~~w~~~~ssL~~v~~q 181 (291)
T PF09765_consen 122 DDDLSTIKLKIFDS------SRQHYLELKLPSNYPFEPPSCSLDLPI--------------PFSLSWSPSQSSLKDVVQQ 181 (291)
T ss_dssp -CCCSEEEEEEETT------CEEEEEEEETTTTTTTSEEEECS-TTS---------------HHHHHHCHT-SHHHHHHH
T ss_pred CCCccEEEEEEEcC------CceEEEEEEECCCCCCCCceeeCCCCc--------------chhhhhcccccCHHHHHHH
Confidence 56777777777632 246789999999999999975321111 01235777 5577776666
Q ss_pred HHHhh
Q 032708 93 IQSLL 97 (135)
Q Consensus 93 i~~ll 97 (135)
.+..+
T Consensus 182 F~~~l 186 (291)
T PF09765_consen 182 FQEAL 186 (291)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
No 42
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=50.70 E-value=25 Score=25.80 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=23.2
Q ss_pred CCCEEEEEEEcCCCCCCCCCeeEEec
Q 032708 33 EGLSYKLSLRFPLDYPFKPPQVKFET 58 (135)
Q Consensus 33 ~gg~f~~~i~fp~~YP~~pP~v~f~t 58 (135)
+.|.|.|+=.+|--||..+|.|.|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 46899999999999999999998864
No 43
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=49.19 E-value=66 Score=20.35 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=29.3
Q ss_pred eEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccc
Q 032708 18 FTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF 61 (135)
Q Consensus 18 ~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 61 (135)
.+|.+.+.|+.+.--..-+=++...+.+.|+. |...+..+.|
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPF 43 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPF 43 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCC
Confidence 58999999988865555677788889888876 6666666655
No 44
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=48.65 E-value=10 Score=28.05 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=25.3
Q ss_pred CCceeccCCCCcCCCcccHHHHHHHHHHhhc
Q 032708 68 YGNICLDILQDKWSSAYDCRTILLSIQSLLG 98 (135)
Q Consensus 68 ~G~icl~~l~~~W~p~~~i~~il~~i~~ll~ 98 (135)
.+..|++++...|+|.+|++..+.-++.++.
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~ 165 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKKCVL 165 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHHHHH
Confidence 5678999999999999998877766666554
No 45
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=44.84 E-value=63 Score=19.66 Aligned_cols=41 Identities=24% Similarity=0.291 Sum_probs=30.6
Q ss_pred HHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032708 92 SIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE 132 (135)
Q Consensus 92 ~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a 132 (135)
.|+.++..-++..-+..+|...+.+- ++|...+-+-+.++|
T Consensus 6 ~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lA 47 (72)
T cd07981 6 KLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLA 47 (72)
T ss_pred HHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556665556667888999988888 999988877776665
No 46
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=42.65 E-value=41 Score=23.94 Aligned_cols=25 Identities=20% Similarity=0.514 Sum_probs=22.1
Q ss_pred CCEEEEEEEcCCCCC-----CCCCeeEEec
Q 032708 34 GLSYKLSLRFPLDYP-----FKPPQVKFET 58 (135)
Q Consensus 34 gg~f~~~i~fp~~YP-----~~pP~v~f~t 58 (135)
.|.|.|+-.+|--|| ..||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 588999999999999 8999998864
No 47
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=41.46 E-value=63 Score=20.88 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=25.7
Q ss_pred CCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCcee
Q 032708 32 YEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNIC 72 (135)
Q Consensus 32 y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~ic 72 (135)
-+|..+.|...-|..|| .|.|.+.+.-. ..|..++++-
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~~~-~~i~~~~Ri~ 53 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNSDL-LHITQDERVS 53 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECCCC-ccccccccEE
Confidence 46778889888899999 59998886422 2333344443
No 48
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=37.37 E-value=47 Score=26.73 Aligned_cols=24 Identities=13% Similarity=0.675 Sum_probs=20.7
Q ss_pred CEEEEEEEcCCCCCCCCCeeEEec
Q 032708 35 LSYKLSLRFPLDYPFKPPQVKFET 58 (135)
Q Consensus 35 g~f~~~i~fp~~YP~~pP~v~f~t 58 (135)
-.|-+.|.+|..||...|.++|.+
T Consensus 306 F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 306 FTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred eEEEEEEeccCCCCCcCCeEEEEe
Confidence 357788889999999999999875
No 49
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=36.46 E-value=45 Score=26.64 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=21.7
Q ss_pred CEEEEEEEcCCCCCCCCCeeEEecc
Q 032708 35 LSYKLSLRFPLDYPFKPPQVKFETM 59 (135)
Q Consensus 35 g~f~~~i~fp~~YP~~pP~v~f~t~ 59 (135)
-.+.+.+..++.||...|+|+...+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4677888899999999999998865
No 50
>KOG2851 consensus Eukaryotic-type DNA primase, catalytic (small) subunit [Replication, recombination and repair]
Probab=33.53 E-value=93 Score=25.49 Aligned_cols=32 Identities=25% Similarity=0.467 Sum_probs=24.4
Q ss_pred ccC-CCceeccCCC---CcCCCcc--cHHHHHHHHHHh
Q 032708 65 VDQ-YGNICLDILQ---DKWSSAY--DCRTILLSIQSL 96 (135)
Q Consensus 65 i~~-~G~icl~~l~---~~W~p~~--~i~~il~~i~~l 96 (135)
|.+ +|+||..+=- +...|.. ||.++|..|.++
T Consensus 332 VHP~Tg~VcVPidv~~~d~Fdp~~vPti~~l~eEl~~~ 369 (412)
T KOG2851|consen 332 VHPKTGRVCVPIDVSKVDEFDPEKVPTISDLLEELESL 369 (412)
T ss_pred ccCCCCceEeecchhhccccCcccCCcHHHHHHHHhhc
Confidence 444 9999986542 5677765 899999999988
No 51
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=32.47 E-value=81 Score=21.94 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=16.5
Q ss_pred cCCCceEEEEEEEcCCCCCCC
Q 032708 13 EGESIFTWIGTIEGGKGTMYE 33 (135)
Q Consensus 13 ~~~~~~~w~~~i~Gp~~tpy~ 33 (135)
...|...|.+++.|+.||+..
T Consensus 43 qPGd~~~ytVtV~G~dGs~~~ 63 (139)
T PF04881_consen 43 QPGDPEWYTVTVQGPDGSIRK 63 (139)
T ss_pred cCCCCcceEEEEECCCCccee
Confidence 356778889999999988664
No 52
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=32.31 E-value=50 Score=24.85 Aligned_cols=56 Identities=25% Similarity=0.469 Sum_probs=43.0
Q ss_pred CCCCeeEEecccccccccC--CCceeccCCCCcCC--CcccHHHHHHHHHHhhcCCCCCC
Q 032708 49 FKPPQVKFETMCFHPNVDQ--YGNICLDILQDKWS--SAYDCRTILLSIQSLLGEPNPES 104 (135)
Q Consensus 49 ~~pP~v~f~t~i~Hpni~~--~G~icl~~l~~~W~--p~~~i~~il~~i~~ll~~p~~~~ 104 (135)
..||.|.|-.+.|.-.|+- -|.|--.+.+.+|- |+-.+.+-|..|..+|-.|+.++
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed~ 226 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEDQ 226 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCcccc
Confidence 4789999999999988886 55554455566664 78889999999999888776543
No 53
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=31.51 E-value=1.2e+02 Score=18.34 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=26.9
Q ss_pred HHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032708 92 SIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE 132 (135)
Q Consensus 92 ~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a 132 (135)
.|+.|+..-++..-++.++..++..= ++|...+-..+-+.|
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lA 45 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLA 45 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777788888899998888877 888887766654443
No 54
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=31.01 E-value=69 Score=19.75 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=25.0
Q ss_pred cccCCCceeccCCCCcCCCcccHHHHHHHHHHhhcC
Q 032708 64 NVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGE 99 (135)
Q Consensus 64 ni~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~ 99 (135)
-|+.+|.|.+..+..---.+.|+.++=..|.+.+..
T Consensus 34 ~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~~ 69 (82)
T PF02563_consen 34 TVDPDGTISLPLIGPVKVAGLTLEEAEEEIKQRLQK 69 (82)
T ss_dssp E--TTSEEEETTTEEEE-TT--HHHHHHHHHHHHTT
T ss_pred EECCCCcEeecccceEEECCCCHHHHHHHHHHHHHH
Confidence 578899999998876566678888888888877765
No 55
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=29.68 E-value=70 Score=22.19 Aligned_cols=47 Identities=17% Similarity=0.378 Sum_probs=30.3
Q ss_pred CcCCCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccCC
Q 032708 78 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFES 135 (135)
Q Consensus 78 ~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~~~ 135 (135)
++|.|...+.+||..... |..+ ....+.. ..|...++--=.+|++|+
T Consensus 32 d~~~pP~el~~iLe~y~~----~~~d-------~~~lr~~L~~YLD~IKm~RAkY~lEN 79 (132)
T PF09432_consen 32 DDWNPPKELQSILEKYNT----PSTD-------TEELRAQLDRYLDDIKMERAKYSLEN 79 (132)
T ss_pred cCCCCCHHHHHHHHHHcC----CCcc-------HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 689999888888877543 2221 2233444 667777777777777764
No 56
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=29.50 E-value=57 Score=19.31 Aligned_cols=19 Identities=11% Similarity=0.337 Sum_probs=12.0
Q ss_pred cCCCcccHHHHHHHHHHhh
Q 032708 79 KWSSAYDCRTILLSIQSLL 97 (135)
Q Consensus 79 ~W~p~~~i~~il~~i~~ll 97 (135)
+|.|.++|.++|...-.-.
T Consensus 37 gW~p~~~L~~~i~~~w~W~ 55 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNWQ 55 (62)
T ss_dssp ----SSSHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHH
Confidence 7999999999998765543
No 57
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=28.80 E-value=85 Score=23.13 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=21.1
Q ss_pred CCCEEEEEEEcCCCCCC-----CCCeeEEe
Q 032708 33 EGLSYKLSLRFPLDYPF-----KPPQVKFE 57 (135)
Q Consensus 33 ~gg~f~~~i~fp~~YP~-----~pP~v~f~ 57 (135)
+.|.|.|+-..|-.||. .||.|.|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 35779999999999998 88888775
No 58
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=27.07 E-value=1.1e+02 Score=24.61 Aligned_cols=39 Identities=18% Similarity=0.344 Sum_probs=29.3
Q ss_pred EEEEEEEcCCCC-CCCCCEEEEEEE---cCCCCCCCCCeeEEec
Q 032708 19 TWIGTIEGGKGT-MYEGLSYKLSLR---FPLDYPFKPPQVKFET 58 (135)
Q Consensus 19 ~w~~~i~Gp~~t-py~gg~f~~~i~---fp~~YP~~pP~v~f~t 58 (135)
+|+..|.|-+++ -|++|.+++++. |-.- =.+.|+|||-.
T Consensus 198 h~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~-~qR~PriRfG~ 240 (345)
T COG3866 198 HDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL-YQRGPRIRFGM 240 (345)
T ss_pred CCeeeeeccCCcccccCCceeEEEeccccccc-cccCCceEeeE
Confidence 689999997776 888999998885 3333 34567999953
No 59
>KOG4690 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.58 E-value=69 Score=22.62 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=27.6
Q ss_pred CCCCCCcccHHHH-------HHhhch-HHHHHHHHHHHHhhcc
Q 032708 99 EPNPESPLNSYAA-------ALLNNK-EDYRKMVQKQYFAGEF 133 (135)
Q Consensus 99 ~p~~~~p~n~~a~-------~~~~~~-~~f~~~~~~~~~~~a~ 133 (135)
-|-++.|.|+=.+ ..|.++ ++|++.-++-++.+|.
T Consensus 77 PPkPEEP~nCC~SGCv~CVWDVY~DdLEdYN~~r~~a~~~i~~ 119 (165)
T KOG4690|consen 77 PPKPEEPDNCCMSGCVNCVWDVYSDDLEDYNHRRKEAAEKIAG 119 (165)
T ss_pred CCCCCCcccchhhccceeehHhhHHHHHHHHHHHHHHHHHhcc
Confidence 5777888877443 458999 9999999998888874
No 60
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=26.40 E-value=1e+02 Score=22.57 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=19.8
Q ss_pred CCEEEEEEEcCCCCCC-----CCCeeEEe
Q 032708 34 GLSYKLSLRFPLDYPF-----KPPQVKFE 57 (135)
Q Consensus 34 gg~f~~~i~fp~~YP~-----~pP~v~f~ 57 (135)
.|.|.|+-.+|--||. .||.|.|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 4789999999999995 78877664
No 61
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=25.58 E-value=2e+02 Score=22.32 Aligned_cols=46 Identities=22% Similarity=0.396 Sum_probs=30.5
Q ss_pred CCceEEEEEEEcCCCCCCCC----CEEEEEEEcC-----CCCCCCCCeeEEecccc
Q 032708 15 ESIFTWIGTIEGGKGTMYEG----LSYKLSLRFP-----LDYPFKPPQVKFETMCF 61 (135)
Q Consensus 15 ~~~~~w~~~i~Gp~~tpy~g----g~f~~~i~fp-----~~YP~~pP~v~f~t~i~ 61 (135)
.|..-|++... ..+|--.. +.|+.+++++ -|-||++|+|..+++-|
T Consensus 100 KDp~PWkl~Yr-V~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~f 154 (276)
T PF00845_consen 100 KDPIPWKLYYR-VEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQF 154 (276)
T ss_pred CCCCCeEEEEE-eecCccccceeeeeeeceeeecccccccccccCCCceEeeeccc
Confidence 45556777776 34443332 3455666654 78899999999998755
No 62
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=24.94 E-value=1.2e+02 Score=18.13 Aligned_cols=28 Identities=25% Similarity=0.122 Sum_probs=23.0
Q ss_pred cccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032708 105 PLNSYAAALLNNK-EDYRKMVQKQYFAGE 132 (135)
Q Consensus 105 p~n~~a~~~~~~~-~~f~~~~~~~~~~~a 132 (135)
-++.+++..+..+ +.+.+++-+.+.+|+
T Consensus 19 ris~~a~~~l~~~~e~rl~~i~~~A~k~~ 47 (65)
T smart00803 19 NLSDEAAKLLAEDVEYRIKEIVQEALKFM 47 (65)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788899999999 888888888777765
No 63
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=22.85 E-value=1.3e+02 Score=19.70 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=22.0
Q ss_pred EEEEEEEcCCCCCCCCCEEEEEEEcCC
Q 032708 19 TWIGTIEGGKGTMYEGLSYKLSLRFPL 45 (135)
Q Consensus 19 ~w~~~i~Gp~~tpy~gg~f~~~i~fp~ 45 (135)
-.|+.+.|+...+=.|..+.+++.|-+
T Consensus 77 g~HlmL~g~~~~l~~G~~v~ltL~f~~ 103 (110)
T PF04314_consen 77 GYHLMLMGLKRPLKPGDTVPLTLTFED 103 (110)
T ss_dssp CCEEEEECESS-B-TTEEEEEEEEETT
T ss_pred CEEEEEeCCcccCCCCCEEEEEEEECC
Confidence 468899999998999999999999865
No 64
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=22.81 E-value=88 Score=27.13 Aligned_cols=29 Identities=34% Similarity=0.554 Sum_probs=23.1
Q ss_pred CCCCCCEEEEEEEcCCCCCC---CCCeeEEecc
Q 032708 30 TMYEGLSYKLSLRFPLDYPF---KPPQVKFETM 59 (135)
Q Consensus 30 tpy~gg~f~~~i~fp~~YP~---~pP~v~f~t~ 59 (135)
+||.=|.|-+ +.+|+.||+ +-|-++|.|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 4677777766 457999997 7899999987
No 65
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.36 E-value=1.3e+02 Score=23.08 Aligned_cols=46 Identities=13% Similarity=0.150 Sum_probs=33.1
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhh
Q 032708 80 WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAG 131 (135)
Q Consensus 80 W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~ 131 (135)
|..-..+..++..|..-|..-+ ++-+..|+.+ ++|.++.++.-+++
T Consensus 124 Wldp~n~~~~a~~I~~~L~~~d------P~~~~~y~~N~~~~~~~L~~l~~~~ 170 (286)
T cd01019 124 WLSPENAAEVAQAVAEKLSALD------PDNAATYAANLEAFNARLAELDATI 170 (286)
T ss_pred CCCHHHHHHHHHHHHHHHHHHC------chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7767778888899988887533 3345578888 88888877665544
No 66
>PF11745 DUF3304: Protein of unknown function (DUF3304); InterPro: IPR021733 This is a family of bacterial proteins of unknown function.
Probab=22.35 E-value=48 Score=22.20 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=15.5
Q ss_pred CCceeccCCCCcCCCcccH
Q 032708 68 YGNICLDILQDKWSSAYDC 86 (135)
Q Consensus 68 ~G~icl~~l~~~W~p~~~i 86 (135)
.|.+|.-.+...|+|++++
T Consensus 50 Gg~~CC~~~p~~W~pg~tv 68 (118)
T PF11745_consen 50 GGFTCCVSLPRKWRPGLTV 68 (118)
T ss_pred CceEEEEEcCCCCCCCCEE
Confidence 5667887888999999875
No 67
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=21.36 E-value=1.1e+02 Score=22.24 Aligned_cols=45 Identities=11% Similarity=0.197 Sum_probs=30.7
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHh
Q 032708 80 WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFA 130 (135)
Q Consensus 80 W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~ 130 (135)
|..-..+..+...|..-|.+-++.. +..|+++ +.|.++.++.-++
T Consensus 111 Wldp~~~~~~a~~I~~~L~~~dP~~------~~~y~~N~~~~~~~l~~l~~~ 156 (203)
T cd01145 111 WLDPNNAPALAKALADALIELDPSE------QEEYKENLRVFLAKLNKLLRE 156 (203)
T ss_pred ecCHHHHHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHHHHHHHHH
Confidence 7777778888889998887644433 4466777 7777766555443
No 68
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=20.40 E-value=2e+02 Score=17.97 Aligned_cols=30 Identities=10% Similarity=0.025 Sum_probs=21.3
Q ss_pred CCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032708 103 ESPLNSYAAALLNNK-EDYRKMVQKQYFAGE 132 (135)
Q Consensus 103 ~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a 132 (135)
..|-|.+|...|..- ++..+..+++.++|.
T Consensus 24 THP~d~~Al~~y~~~~~~~~~l~~~Ye~~yG 54 (78)
T PF12652_consen 24 THPDDQEALEYYNEYSKQRKQLKKEYEKRYG 54 (78)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 346778888888776 777777777776663
Done!