Query 032708
Match_columns 135
No_of_seqs 157 out of 1124
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 07:32:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032708.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032708hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpr_A Ubiquitin-conjugating e 100.0 3.1E-50 1.1E-54 285.0 15.5 133 2-134 18-151 (151)
2 2r0j_A Ubiquitin carrier prote 100.0 2.4E-50 8.1E-55 285.0 14.2 134 2-135 15-149 (149)
3 2c2v_B Ubiquitin-conjugating e 100.0 2.3E-50 7.9E-55 286.5 13.8 134 2-135 19-153 (154)
4 2ayv_A Ubiquitin-conjugating e 100.0 1.2E-49 4.1E-54 285.9 15.3 131 2-132 35-166 (166)
5 2c4o_A Ubiquitin-conjugating e 100.0 2.3E-49 7.9E-54 284.1 16.0 132 2-133 33-165 (165)
6 1z2u_A Ubiquitin-conjugating e 100.0 1.5E-49 5.3E-54 281.1 14.8 132 2-133 18-150 (150)
7 2aak_A UBC1, ubiquitin conjuga 100.0 2.1E-49 7.2E-54 280.9 15.1 133 2-134 18-151 (152)
8 1ayz_A UBC2, ubiquitin-conjuga 100.0 1.2E-49 4.1E-54 286.6 13.8 133 2-134 18-151 (169)
9 1zdn_A Ubiquitin-conjugating e 100.0 1.1E-49 3.8E-54 284.0 13.2 131 2-132 27-158 (158)
10 1yh2_A HSPC150 protein similar 100.0 4.3E-49 1.5E-53 283.7 15.7 134 2-135 18-156 (169)
11 1fxt_A Ubiquitin-conjugating e 100.0 1.1E-49 3.9E-54 281.5 12.1 132 2-133 15-149 (149)
12 2e2c_A Ubiquitin conjugating e 100.0 4.2E-49 1.4E-53 280.5 14.8 132 2-134 23-155 (156)
13 1jat_A Ubiquitin-conjugating e 100.0 1.7E-49 5.7E-54 282.3 12.4 133 2-134 19-152 (155)
14 3rcz_B SUMO-conjugating enzyme 100.0 1.5E-48 5.2E-53 279.4 14.5 132 1-132 23-162 (163)
15 3h8k_A Ubiquitin-conjugating e 100.0 2.8E-48 9.4E-53 278.2 15.2 131 2-132 17-162 (164)
16 2ucz_A UBC7, ubiquitin conjuga 100.0 3E-48 1E-52 278.3 15.0 132 2-133 18-164 (165)
17 3bzh_A Ubiquitin-conjugating e 100.0 4.2E-48 1.4E-52 283.8 15.4 132 2-133 62-194 (194)
18 2f4z_A Tgtwinscan_2721 - E2 do 100.0 3.2E-48 1.1E-52 284.1 14.3 129 6-134 63-193 (193)
19 2bep_A Ubiquitin-conjugating e 100.0 7.5E-48 2.6E-52 274.8 15.5 130 4-133 27-158 (159)
20 1i7k_A Ubiquitin-conjugating e 100.0 3.8E-48 1.3E-52 280.9 14.1 132 2-134 44-176 (179)
21 2pwq_A Ubiquitin conjugating e 100.0 2.3E-48 8E-53 289.1 13.1 133 2-134 37-171 (216)
22 2gjd_A Ubiquitin-conjugating e 100.0 5.6E-48 1.9E-52 275.0 14.0 132 2-133 18-157 (157)
23 1wzv_A Ubiquitin-conjugating e 100.0 1.2E-47 4.2E-52 272.6 13.5 132 2-134 18-152 (155)
24 3k9o_A Ubiquitin-conjugating e 100.0 4.2E-47 1.4E-51 280.0 15.8 131 4-134 24-156 (201)
25 2grr_A Ubiquitin-conjugating e 100.0 2.6E-47 8.9E-52 272.5 13.6 132 2-133 21-160 (161)
26 1tte_A Ubiquitin-conjugating e 100.0 1.5E-47 5.2E-52 284.6 10.5 133 2-134 16-151 (215)
27 3fn1_B NEDD8-conjugating enzym 100.0 1.2E-46 4.3E-51 270.3 14.6 132 1-133 27-167 (167)
28 2onu_A Ubiquitin-conjugating e 100.0 4.9E-47 1.7E-51 268.8 11.1 129 6-134 17-148 (152)
29 1c4z_D UBCH7, ubiquitin conjug 100.0 1.8E-46 6.3E-51 266.3 14.1 133 1-134 15-150 (154)
30 3rz3_A Ubiquitin-conjugating e 100.0 2.1E-46 7.2E-51 272.7 14.6 131 2-132 21-172 (183)
31 1y8x_A Ubiquitin-conjugating e 100.0 6.1E-46 2.1E-50 265.2 15.6 130 3-133 19-150 (160)
32 1yrv_A Ubiquitin-conjugating l 100.0 1.6E-46 5.4E-51 270.3 12.3 128 2-130 37-168 (169)
33 3e46_A Ubiquitin-conjugating e 100.0 5.3E-46 1.8E-50 282.0 15.4 131 4-134 76-208 (253)
34 2awf_A Ubiquitin-conjugating e 100.0 3.8E-46 1.3E-50 269.0 12.1 126 2-127 31-172 (172)
35 2nvu_C NEDD8-conjugating enzym 100.0 1.7E-45 5.7E-50 267.3 14.8 130 3-133 39-170 (180)
36 2y9m_A Ubiquitin-conjugating e 100.0 4.6E-45 1.6E-49 263.4 15.9 127 7-133 36-168 (172)
37 2z5d_A Ubiquitin-conjugating e 100.0 3.5E-46 1.2E-50 270.4 9.2 128 6-134 40-170 (179)
38 4ddg_A Ubiquitin-conjugating e 100.0 7.5E-45 2.6E-49 291.3 15.0 133 2-134 17-150 (399)
39 3o2u_A NEDD8-conjugating enzym 100.0 4.6E-44 1.6E-48 261.7 14.8 130 4-134 43-180 (190)
40 1yf9_A Ubiquitin carrier prote 100.0 1.1E-44 3.9E-49 261.0 11.1 123 12-134 32-157 (171)
41 4ds2_A Ubiquitin-conjugating e 100.0 9.8E-42 3.4E-46 244.9 11.7 122 5-126 37-164 (167)
42 3ceg_A Baculoviral IAP repeat- 100.0 2E-40 6.9E-45 258.1 11.4 127 7-133 99-243 (323)
43 2q0v_A Ubiquitin-conjugating e 100.0 7.9E-41 2.7E-45 237.7 8.2 115 2-117 35-156 (156)
44 2fo3_A Ubiquitin-conjugating e 100.0 1E-39 3.5E-44 224.4 11.7 103 2-104 20-123 (125)
45 2h2y_A Ubiquitin-conjugating e 100.0 6.3E-39 2.1E-43 223.4 12.2 101 2-102 34-135 (136)
46 2a4d_A Ubiquitin-conjugating e 100.0 3.6E-39 1.2E-43 229.9 10.7 110 2-111 39-156 (160)
47 1jat_B Ubiquitin-conjugating e 100.0 6E-40 2E-44 229.1 4.9 112 2-114 20-138 (138)
48 2hlw_A Ubiquitin-conjugating e 100.0 1E-38 3.6E-43 229.6 6.1 110 2-111 49-166 (170)
49 2a7l_A Hypothetical ubiquitin- 100.0 7.9E-38 2.7E-42 217.8 10.3 97 2-98 36-136 (136)
50 2f4w_A Ubiquitin-conjugating e 100.0 8.9E-36 3E-40 217.3 13.0 102 2-105 28-132 (187)
51 1zuo_A Hypothetical protein LO 100.0 6.7E-37 2.3E-41 223.0 1.9 120 5-132 47-181 (186)
52 2z6o_A UFM1-conjugating enzyme 99.9 2.7E-25 9.1E-30 157.5 0.3 97 11-115 49-160 (172)
53 3r3q_A Suppressor protein STP2 99.8 4.3E-21 1.5E-25 136.5 9.0 95 9-104 52-161 (162)
54 3kpa_A Probable ubiquitin fold 99.6 2.9E-17 9.8E-22 114.2 1.8 64 18-84 58-132 (168)
55 3obq_A Tumor susceptibility ge 99.6 4.6E-16 1.6E-20 108.8 7.4 79 14-98 50-137 (146)
56 2ebm_A RWD domain-containing p 96.1 0.04 1.4E-06 36.5 8.2 42 17-58 37-78 (128)
57 2ebk_A RWD domain-containing p 94.6 0.28 9.7E-06 32.3 8.4 40 17-57 39-78 (128)
58 2yz0_A Serine/threonine-protei 94.2 0.15 5.2E-06 34.1 6.5 41 17-58 45-85 (138)
59 2daw_A RWD domain containing p 94.2 0.15 5E-06 35.1 6.5 23 36-58 76-98 (154)
60 2day_A Ring finger protein 25; 94.1 0.19 6.4E-06 33.1 6.7 42 17-58 39-82 (128)
61 1ukx_A GCN2, GCN2 EIF2alpha ki 91.5 0.14 4.9E-06 34.1 3.1 23 35-57 63-85 (137)
62 3zqs_A E3 ubiquitin-protein li 91.3 2.4 8.3E-05 30.1 9.5 66 14-98 22-87 (186)
63 2dax_A Protein C21ORF6; RWD do 90.1 0.26 8.9E-06 33.6 3.4 23 36-58 74-96 (152)
64 2cwb_A Chimera of immunoglobul 80.6 0.33 1.1E-05 31.7 0.0 32 101-132 22-54 (108)
65 3rls_A YAF9, protein AF-9 homo 38.0 99 0.0034 21.5 6.0 45 15-61 30-74 (175)
66 2jrw_A Cyclic extended PEP.1; 30.5 13 0.00046 17.2 0.4 17 48-64 4-20 (26)
67 2bum_A Protocatechuate 3,4-dio 29.9 50 0.0017 23.6 3.5 26 33-58 109-139 (209)
68 2k6w_A Putative uncharacterize 22.8 1.1E+02 0.0037 19.7 3.9 27 19-45 81-107 (120)
69 3qrl_A Transcription initiatio 22.6 1.8E+02 0.0061 19.5 6.0 43 17-61 32-77 (140)
70 1h3o_B Transcription initiatio 21.9 1.1E+02 0.0036 18.3 3.4 40 93-132 11-51 (76)
71 2ahq_A Sigma-54, RNA polymeras 21.8 1.4E+02 0.0046 17.8 3.9 34 84-117 16-50 (76)
72 3pft_A Flavin reductase; desul 21.7 44 0.0015 22.3 1.8 30 49-78 42-74 (157)
73 1taf_B TFIID TBP associated fa 21.7 1.2E+02 0.004 17.8 3.5 28 105-132 23-51 (70)
74 2yzh_A Probable thiol peroxida 21.6 55 0.0019 21.4 2.3 34 64-97 138-171 (171)
75 1q8c_A Hypothetical protein Mg 20.8 1.7E+02 0.0059 18.9 4.4 36 99-134 46-85 (151)
No 1
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=3.1e-50 Score=284.97 Aligned_cols=133 Identities=39% Similarity=0.713 Sum_probs=130.4
Q ss_pred CCCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCCCcCC
Q 032708 2 SGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWS 81 (135)
Q Consensus 2 ~~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~ 81 (135)
+++++||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+
T Consensus 18 ~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~ 97 (151)
T 4gpr_A 18 QDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINKNGVICLDILKDQWS 97 (151)
T ss_dssp HSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGTTTCC
T ss_pred hCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceECCCCEEEcccccCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032708 82 SAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 134 (135)
Q Consensus 82 p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~~ 134 (135)
|+++|++||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|+++||++
T Consensus 98 p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya~p 151 (151)
T 4gpr_A 98 PALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYARP 151 (151)
T ss_dssp TTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCCC
T ss_pred CCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999 99999999999999974
No 2
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=2.4e-50 Score=285.00 Aligned_cols=134 Identities=41% Similarity=0.688 Sum_probs=130.5
Q ss_pred CCCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCCCcCC
Q 032708 2 SGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWS 81 (135)
Q Consensus 2 ~~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~ 81 (135)
+++++||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|+++|+
T Consensus 15 ~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~ 94 (149)
T 2r0j_A 15 NEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWS 94 (149)
T ss_dssp HSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCBBCCGGGTTTCC
T ss_pred hCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCCCEEechhcCCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccCC
Q 032708 82 SAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFES 135 (135)
Q Consensus 82 p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~~~ 135 (135)
|++||++||.+|++||.+|++++|+|.+||++|+++ ++|.++||+|+++||.++
T Consensus 95 p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~~ 149 (149)
T 2r0j_A 95 PALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYANNN 149 (149)
T ss_dssp TTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSCC-
T ss_pred CCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999 999999999999999863
No 3
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.3e-50 Score=286.47 Aligned_cols=134 Identities=37% Similarity=0.611 Sum_probs=128.9
Q ss_pred CCCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCCCcCC
Q 032708 2 SGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWS 81 (135)
Q Consensus 2 ~~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~ 81 (135)
+++++||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|+++|+
T Consensus 19 ~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~ 98 (154)
T 2c2v_B 19 AEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWS 98 (154)
T ss_dssp HSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTCBBCCHHHHTSCC
T ss_pred hCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCccCCeEEchhccCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccCC
Q 032708 82 SAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFES 135 (135)
Q Consensus 82 p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~~~ 135 (135)
|+++|++||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++||.+.
T Consensus 99 p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a~~~ 153 (154)
T 2c2v_B 99 PALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNN 153 (154)
T ss_dssp TTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999 999999999999999763
No 4
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=1.2e-49 Score=285.86 Aligned_cols=131 Identities=40% Similarity=0.731 Sum_probs=128.9
Q ss_pred CCCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCCCcCC
Q 032708 2 SGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWS 81 (135)
Q Consensus 2 ~~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~ 81 (135)
+++++||++.++++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|+++|+
T Consensus 35 ~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~G~ICL~iL~~~Ws 114 (166)
T 2ayv_A 35 KDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAICLDILKDQWS 114 (166)
T ss_dssp HSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCTTCBBCCGGGTTTCC
T ss_pred hCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCCCCCeEEcccccccCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032708 82 SAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE 132 (135)
Q Consensus 82 p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a 132 (135)
|+++|++||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++||
T Consensus 115 P~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A 166 (166)
T 2ayv_A 115 PALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA 166 (166)
T ss_dssp TTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999 999999999999997
No 5
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=2.3e-49 Score=284.13 Aligned_cols=132 Identities=39% Similarity=0.737 Sum_probs=129.7
Q ss_pred CCCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCCCcCC
Q 032708 2 SGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWS 81 (135)
Q Consensus 2 ~~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~ 81 (135)
+++++||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|+++|+
T Consensus 33 ~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~~~G~ICl~iL~~~W~ 112 (165)
T 2c4o_A 33 RDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWS 112 (165)
T ss_dssp SSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCTTCBBCCGGGTTTCC
T ss_pred hCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCCCCCeEeehhhcCCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032708 82 SAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 133 (135)
Q Consensus 82 p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~ 133 (135)
|+++|++||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|+++||.
T Consensus 113 P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a~ 165 (165)
T 2c4o_A 113 PALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 165 (165)
T ss_dssp TTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred CcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999 9999999999999985
No 6
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=1.5e-49 Score=281.07 Aligned_cols=132 Identities=39% Similarity=0.728 Sum_probs=129.4
Q ss_pred CCCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCCCcCC
Q 032708 2 SGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWS 81 (135)
Q Consensus 2 ~~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~ 81 (135)
+++++||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|+++|+
T Consensus 18 ~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~ 97 (150)
T 1z2u_A 18 RDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWS 97 (150)
T ss_dssp HSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGTTTCC
T ss_pred hCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCCCCCeEeeccccCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032708 82 SAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 133 (135)
Q Consensus 82 p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~ 133 (135)
|+++|.+||.+|++||.+|++++|+|.+||++|+++ ++|.++||+|+++||+
T Consensus 98 p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 150 (150)
T 1z2u_A 98 PALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 150 (150)
T ss_dssp TTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999 9999999999999985
No 7
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=2.1e-49 Score=280.94 Aligned_cols=133 Identities=43% Similarity=0.724 Sum_probs=129.6
Q ss_pred CCCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCCCcCC
Q 032708 2 SGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWS 81 (135)
Q Consensus 2 ~~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~ 81 (135)
+++++||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+
T Consensus 18 ~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~ 97 (152)
T 2aak_A 18 QDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWS 97 (152)
T ss_dssp HSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSBBCCGGGTTSCC
T ss_pred hCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCCCCCCCEEechhhcCCCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032708 82 SAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 134 (135)
Q Consensus 82 p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~~ 134 (135)
|+++|.+||.+|+++|.+|++++|+|.+||++|+++ ++|.++||+|+++||.+
T Consensus 98 p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~ 151 (152)
T 2aak_A 98 PIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTA 151 (152)
T ss_dssp TTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC-
T ss_pred CCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999 99999999999999976
No 8
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1.2e-49 Score=286.55 Aligned_cols=133 Identities=43% Similarity=0.710 Sum_probs=130.0
Q ss_pred CCCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCCCcCC
Q 032708 2 SGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWS 81 (135)
Q Consensus 2 ~~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~ 81 (135)
+++++||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|.||+++|++.|+
T Consensus 18 ~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNI~~~G~ICl~iL~~~Ws 97 (169)
T 1ayz_A 18 EDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWT 97 (169)
T ss_dssp HSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSBBCCGGGTTTCC
T ss_pred hCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCCCCCCCeEeehhhccCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032708 82 SAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 134 (135)
Q Consensus 82 p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~~ 134 (135)
|+++|++||.+|++||.+|++++|+|.+||++|+++ ++|.++||+|+++||.+
T Consensus 98 P~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a~~ 151 (169)
T 1ayz_A 98 PTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWED 151 (169)
T ss_dssp TTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999 99999999999999863
No 9
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-49 Score=284.03 Aligned_cols=131 Identities=36% Similarity=0.598 Sum_probs=128.8
Q ss_pred CCCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCCCcCC
Q 032708 2 SGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWS 81 (135)
Q Consensus 2 ~~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~ 81 (135)
+++++||++.++++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+
T Consensus 27 ~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~ 106 (158)
T 1zdn_A 27 ADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWT 106 (158)
T ss_dssp HSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSBBCHHHHTTTCC
T ss_pred hCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCCCCCCEEehhhcCCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032708 82 SAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE 132 (135)
Q Consensus 82 p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a 132 (135)
|+++|++||.+|++||.+|++++|+|.+||++|++| ++|.++||+||++||
T Consensus 107 p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A 158 (158)
T 1zdn_A 107 AELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG 158 (158)
T ss_dssp TTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999 999999999999998
No 10
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.3e-49 Score=283.72 Aligned_cols=134 Identities=31% Similarity=0.581 Sum_probs=130.6
Q ss_pred CCCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCC----
Q 032708 2 SGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ---- 77 (135)
Q Consensus 2 ~~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~---- 77 (135)
+++++||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|+
T Consensus 18 ~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~~G~iCl~iL~~~~~ 97 (169)
T 1yh2_A 18 TEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPK 97 (169)
T ss_dssp HSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGSCTTT
T ss_pred hCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccCCcCCeEecccccCCcc
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CcCCCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccCC
Q 032708 78 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFES 135 (135)
Q Consensus 78 ~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~~~ 135 (135)
++|+|+++|++||.+|++||.+|++++|+|.+||++|+++ ++|.++||+|+++||..+
T Consensus 98 ~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~~ 156 (169)
T 1yh2_A 98 GAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQK 156 (169)
T ss_dssp SCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCCC
T ss_pred cCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHHcccc
Confidence 8999999999999999999999999999999999999999 999999999999999753
No 11
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=1.1e-49 Score=281.49 Aligned_cols=132 Identities=32% Similarity=0.579 Sum_probs=128.6
Q ss_pred CCCCCCeEEeecCC-CceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccC-CCceeccCCCCc
Q 032708 2 SGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDK 79 (135)
Q Consensus 2 ~~~~~gi~~~p~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~ 79 (135)
+++++||++.+.++ |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.++
T Consensus 15 ~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~~~G~iCl~iL~~~ 94 (149)
T 1fxt_A 15 DDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNA 94 (149)
T ss_dssp HCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCSSSCCBCCHHHHTS
T ss_pred hCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcCCCCeEeCCcCCCC
Confidence 56889999999887 9999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032708 80 WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 133 (135)
Q Consensus 80 W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~ 133 (135)
|+|++||++||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++||.
T Consensus 95 W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a~ 149 (149)
T 1fxt_A 95 WSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS 149 (149)
T ss_dssp CCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHCC
T ss_pred CCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999 9999999999999984
No 12
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=4.2e-49 Score=280.50 Aligned_cols=132 Identities=55% Similarity=1.099 Sum_probs=128.7
Q ss_pred CCCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCCCcCC
Q 032708 2 SGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWS 81 (135)
Q Consensus 2 ~~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~ 81 (135)
+++++||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+
T Consensus 23 ~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~ 102 (156)
T 2e2c_A 23 MSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWT 102 (156)
T ss_dssp HHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGTTTCC
T ss_pred hCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCccCceEECccccccCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032708 82 SAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 134 (135)
Q Consensus 82 p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~~ 134 (135)
|+++|.+||.+|++||.+|++++|+|.+||++| +| ++|.++||+|+++||.+
T Consensus 103 p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~~~ 155 (156)
T 2e2c_A 103 ASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQSD 155 (156)
T ss_dssp TTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999 78 99999999999999976
No 13
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=1.7e-49 Score=282.28 Aligned_cols=133 Identities=36% Similarity=0.593 Sum_probs=130.2
Q ss_pred CCCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCCCcCC
Q 032708 2 SGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWS 81 (135)
Q Consensus 2 ~~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~ 81 (135)
+++++||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+
T Consensus 19 ~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~ 98 (155)
T 1jat_A 19 SDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWS 98 (155)
T ss_dssp HSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCCBCCGGGTTTCC
T ss_pred hCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCCCCCEEEchhhccCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032708 82 SAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 134 (135)
Q Consensus 82 p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~~ 134 (135)
|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++||.+
T Consensus 99 p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a~~ 152 (155)
T 1jat_A 99 PALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK 152 (155)
T ss_dssp TTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSEE
T ss_pred CCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999 99999999999999975
No 14
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=1.5e-48 Score=279.38 Aligned_cols=132 Identities=36% Similarity=0.642 Sum_probs=127.6
Q ss_pred CCCCCCCeEEeecCC-----CceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccC
Q 032708 1 MSGGDLGVSAFPEGE-----SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDI 75 (135)
Q Consensus 1 ~~~~~~gi~~~p~~~-----~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~ 75 (135)
++++++||++.|.++ |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++
T Consensus 23 ~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i~HPnV~~~G~iCl~i 102 (163)
T 3rcz_B 23 RRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSI 102 (163)
T ss_dssp HHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCTTSBBCCGG
T ss_pred HhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCCccCCCCCCCcEeccc
Confidence 368999999999866 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCc--CCCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032708 76 LQDK--WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE 132 (135)
Q Consensus 76 l~~~--W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a 132 (135)
|... |+|++||++||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++||
T Consensus 103 L~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~~ya 162 (163)
T 3rcz_B 103 LNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENA 162 (163)
T ss_dssp GCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTC
T ss_pred cCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 9764 99999999999999999999999999999999999999 999999999999998
No 15
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=2.8e-48 Score=278.20 Aligned_cols=131 Identities=34% Similarity=0.619 Sum_probs=127.1
Q ss_pred CCCCCCeEEeecCC-CceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCC---
Q 032708 2 SGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ--- 77 (135)
Q Consensus 2 ~~~~~gi~~~p~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~--- 77 (135)
+++++||++.+.++ |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.
T Consensus 17 ~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV~~~G~iCl~iL~~~~ 96 (164)
T 3h8k_A 17 LNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPG 96 (164)
T ss_dssp HSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTSBBCCGGGSCSC
T ss_pred hCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCCCCCCcEeeecccCcc
Confidence 57899999999866 99999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----------CcCCCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032708 78 ----------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE 132 (135)
Q Consensus 78 ----------~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a 132 (135)
++|+|++||++||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++++
T Consensus 97 ~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~s~ 162 (164)
T 3h8k_A 97 DDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSL 162 (164)
T ss_dssp SCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred cccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 7899999999999999999999999999999999999999 999999999999986
No 16
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=3e-48 Score=278.33 Aligned_cols=132 Identities=33% Similarity=0.610 Sum_probs=127.5
Q ss_pred CCCCCCeEEeecC-CCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCC----
Q 032708 2 SGGDLGVSAFPEG-ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL---- 76 (135)
Q Consensus 2 ~~~~~gi~~~p~~-~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l---- 76 (135)
+++++||++.+.+ +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|
T Consensus 18 ~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~~G~iCl~iL~~~~ 97 (165)
T 2ucz_A 18 KDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPG 97 (165)
T ss_dssp HSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTBCTTSBBCCGGGSCCC
T ss_pred hCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCCCCCCCcEeehhhCCcc
Confidence 5789999999975 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------CCcCCCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032708 77 ---------QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 133 (135)
Q Consensus 77 ---------~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~ 133 (135)
.++|+|+++|++||.+|++||.+|++++|+|.+||++|+++ ++|.++||+|+++++-
T Consensus 98 ~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~~~~~~~~~ 164 (165)
T 2ucz_A 98 DDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILKSLG 164 (165)
T ss_dssp SCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHHHHHTT
T ss_pred ccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999999999999999999999 9999999999999874
No 17
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=4.2e-48 Score=283.81 Aligned_cols=132 Identities=38% Similarity=0.629 Sum_probs=129.4
Q ss_pred CCCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCCCcCC
Q 032708 2 SGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWS 81 (135)
Q Consensus 2 ~~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~ 81 (135)
+++++||++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+
T Consensus 62 ~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~G~ICL~iL~~~Ws 141 (194)
T 3bzh_A 62 LDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWS 141 (194)
T ss_dssp HSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTCBBCCGGGTTTCC
T ss_pred hCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceECCCCceechhhhccCC
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032708 82 SAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 133 (135)
Q Consensus 82 p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~ 133 (135)
|+++|.+||++|++||.+|++++|+|.+||++|+++ ++|.++||+|+++||.
T Consensus 142 P~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya~ 194 (194)
T 3bzh_A 142 PALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 194 (194)
T ss_dssp TTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999 9999999999999985
No 18
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=3.2e-48 Score=284.12 Aligned_cols=129 Identities=40% Similarity=0.667 Sum_probs=125.2
Q ss_pred CCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccC-CCceeccCCCCcCCCcc
Q 032708 6 LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSSAY 84 (135)
Q Consensus 6 ~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~W~p~~ 84 (135)
+||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++|.++|+|++
T Consensus 63 ~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ 142 (193)
T 2f4z_A 63 HGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPAL 142 (193)
T ss_dssp -CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTS
T ss_pred CcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeEEEecCCccCCCcCCCCEEECccccccCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999995 99999999999999999
Q ss_pred cHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032708 85 DCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 134 (135)
Q Consensus 85 ~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~~ 134 (135)
+|++||++|++||.+|++++|+|.+||++|++| ++|.++||+|+++||.|
T Consensus 143 ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~~t~~ya~~ 193 (193)
T 2f4z_A 143 TIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFAKE 193 (193)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999 99999999999999975
No 19
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=7.5e-48 Score=274.78 Aligned_cols=130 Identities=34% Similarity=0.603 Sum_probs=127.2
Q ss_pred CCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccC-CCceeccCCCCcCCC
Q 032708 4 GDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSS 82 (135)
Q Consensus 4 ~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~W~p 82 (135)
+++||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.++|+|
T Consensus 27 ~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~~~G~iCl~iL~~~W~p 106 (159)
T 2bep_A 27 SKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 106 (159)
T ss_dssp HTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCT
T ss_pred CCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCCccCCCCCCCEEeChhhhccCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999995 999999999999999
Q ss_pred cccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032708 83 AYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 133 (135)
Q Consensus 83 ~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~ 133 (135)
+++|++||.+|++||.+|++++|+|.+||++|+++ ++|.++||+|+++||.
T Consensus 107 ~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 158 (159)
T 2bep_A 107 AMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAG 158 (159)
T ss_dssp TCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred CCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999 9999999999999985
No 20
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.8e-48 Score=280.87 Aligned_cols=132 Identities=58% Similarity=1.016 Sum_probs=128.0
Q ss_pred CCCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCCCcCC
Q 032708 2 SGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWS 81 (135)
Q Consensus 2 ~~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~ 81 (135)
+++++||++.|+++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+
T Consensus 44 ~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~G~ICL~iL~~~Ws 123 (179)
T 1i7k_A 44 MSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKEKWS 123 (179)
T ss_dssp HHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCTTCBBCCGGGTTTCC
T ss_pred hCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCccccCCeEEcccCcCcCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032708 82 SAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 134 (135)
Q Consensus 82 p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~~ 134 (135)
|+++|++||.+|++||.+|++++|+|.+||++| +| ++|.++|++++++++..
T Consensus 124 P~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~~~~ 176 (179)
T 1i7k_A 124 ALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTS 176 (179)
T ss_dssp TTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTCC-
T ss_pred CCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999 88 99999999999999865
No 21
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=2.3e-48 Score=289.13 Aligned_cols=133 Identities=35% Similarity=0.681 Sum_probs=129.6
Q ss_pred CCCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccC-CCceeccCCCCcC
Q 032708 2 SGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKW 80 (135)
Q Consensus 2 ~~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~W 80 (135)
+++++||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++|+++|
T Consensus 37 ~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~W 116 (216)
T 2pwq_A 37 NENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEW 116 (216)
T ss_dssp HSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCCHHHHHHC
T ss_pred hCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCCcCCCCEEEchhhcccC
Confidence 578899999999999999999999999999999999999999999999999999999999999995 9999999999999
Q ss_pred CCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032708 81 SSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 134 (135)
Q Consensus 81 ~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~~ 134 (135)
+|++||.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++||..
T Consensus 117 sP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~~ 171 (216)
T 2pwq_A 117 SPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATG 171 (216)
T ss_dssp CTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999 99999999999999974
No 22
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=5.6e-48 Score=274.96 Aligned_cols=132 Identities=35% Similarity=0.603 Sum_probs=127.5
Q ss_pred CCCCCCeEEeecC-----CCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCC
Q 032708 2 SGGDLGVSAFPEG-----ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL 76 (135)
Q Consensus 2 ~~~~~gi~~~p~~-----~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l 76 (135)
+++++||++.|.+ +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|
T Consensus 18 ~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL 97 (157)
T 2gjd_A 18 KDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSIL 97 (157)
T ss_dssp HCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCCCTTBCTTSBBCCGGG
T ss_pred hCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCccCCCCCCCcEeeecc
Confidence 5789999999874 48999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC--cCCCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032708 77 QD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 133 (135)
Q Consensus 77 ~~--~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~ 133 (135)
.. +|+|+++|++||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|+++||.
T Consensus 98 ~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 157 (157)
T 2gjd_A 98 NEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK 157 (157)
T ss_dssp CTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHHHHHTBC
T ss_pred cCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 87 799999999999999999999999999999999999999 9999999999999985
No 23
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=1.2e-47 Score=272.62 Aligned_cols=132 Identities=28% Similarity=0.547 Sum_probs=128.6
Q ss_pred CCCCCCeEE-eecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCC-CCc
Q 032708 2 SGGDLGVSA-FPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL-QDK 79 (135)
Q Consensus 2 ~~~~~gi~~-~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l-~~~ 79 (135)
+++++||++ .++++|+++|+++|. |++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++| .++
T Consensus 18 ~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G~iCl~iL~~~~ 96 (155)
T 1wzv_A 18 KKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSEN 96 (155)
T ss_dssp HSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBCCCGGGCTTT
T ss_pred hCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCCCCCeEeecCCCccC
Confidence 578899999 888999999999999 99999999999999999999999999999999999999999999999999 899
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032708 80 WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 134 (135)
Q Consensus 80 W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~~ 134 (135)
|+|+++|++||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|+++||.+
T Consensus 97 W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~ 152 (155)
T 1wzv_A 97 WKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVD 152 (155)
T ss_dssp CCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCEE
T ss_pred CCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999 99999999999999975
No 24
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=4.2e-47 Score=279.98 Aligned_cols=131 Identities=34% Similarity=0.598 Sum_probs=127.8
Q ss_pred CCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccC-CCceeccCCCCcCCC
Q 032708 4 GDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSS 82 (135)
Q Consensus 4 ~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~W~p 82 (135)
+++||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++|.++|+|
T Consensus 24 ~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~~G~iCl~iL~~~W~p 103 (201)
T 3k9o_A 24 SKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 103 (201)
T ss_dssp HTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCT
T ss_pred CCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcccCCCcCCCCeeeCcccccCCCC
Confidence 4789999999999999999999999999999999999999999999999999999999999995 999999999999999
Q ss_pred cccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032708 83 AYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 134 (135)
Q Consensus 83 ~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~~ 134 (135)
++||++||.+|+++|.+|++++|+|.+||++|+++ ++|.++||+|+++||..
T Consensus 104 ~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~ 156 (201)
T 3k9o_A 104 AMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 156 (201)
T ss_dssp TCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999 99999999999999964
No 25
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=2.6e-47 Score=272.50 Aligned_cols=132 Identities=39% Similarity=0.631 Sum_probs=127.3
Q ss_pred CCCCCCeEEeecC-----CCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCC
Q 032708 2 SGGDLGVSAFPEG-----ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL 76 (135)
Q Consensus 2 ~~~~~gi~~~p~~-----~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l 76 (135)
+++++||++.|.. +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|
T Consensus 21 ~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL 100 (161)
T 2grr_A 21 KDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSIL 100 (161)
T ss_dssp HSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCSTTBCTTSBBCCGGG
T ss_pred hCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecCcccCCCCCCCeEeehhc
Confidence 5788999999863 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC--cCCCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032708 77 QD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 133 (135)
Q Consensus 77 ~~--~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~ 133 (135)
.. +|+|+++|.+||.+|++||.+|++++|+|.+||++|+++ ++|.++||+|+++||.
T Consensus 101 ~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 160 (161)
T 2grr_A 101 EEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 160 (161)
T ss_dssp CTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred CCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 86 899999999999999999999999999999999999999 9999999999999995
No 26
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=1.5e-47 Score=284.56 Aligned_cols=133 Identities=32% Similarity=0.584 Sum_probs=128.6
Q ss_pred CCCCCCeEEeecCC-CceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccC-CCceeccCCCCc
Q 032708 2 SGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDK 79 (135)
Q Consensus 2 ~~~~~gi~~~p~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~ 79 (135)
+++++||++.+.++ ++++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++|+++
T Consensus 16 ~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~ 95 (215)
T 1tte_A 16 DDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNA 95 (215)
T ss_dssp TTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSCSSSSCCCSSTTTCC
T ss_pred hCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCcCCCCEEECccCCCC
Confidence 67899999999876 5669999999999999999999999999999999999999999999999999 999999999999
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032708 80 WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 134 (135)
Q Consensus 80 W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~~ 134 (135)
|+|++||.+||.+|++||.+|++++|+|.+||++|+++ ++|.++||+|+++||..
T Consensus 96 WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA~~ 151 (215)
T 1tte_A 96 WSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASE 151 (215)
T ss_dssp SCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSSCC
T ss_pred CCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999 99999999999999975
No 27
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=1.2e-46 Score=270.33 Aligned_cols=132 Identities=23% Similarity=0.392 Sum_probs=125.8
Q ss_pred CCCCCCCeEEee-cCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCCC-
Q 032708 1 MSGGDLGVSAFP-EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQD- 78 (135)
Q Consensus 1 ~~~~~~gi~~~p-~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~- 78 (135)
++++++||++.+ +++|++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|..
T Consensus 27 ~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~iL~~~ 105 (167)
T 3fn1_B 27 EANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREH 105 (167)
T ss_dssp GGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSBCTTCCBCCGGGSBC
T ss_pred HhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCCCCCCEEechhhccC
Confidence 367899999986 468899999998 89999999999999999999999999999999999999999999999999975
Q ss_pred -----cCCCcccHHHHHHHHHHhhcC-CCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032708 79 -----KWSSAYDCRTILLSIQSLLGE-PNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 133 (135)
Q Consensus 79 -----~W~p~~~i~~il~~i~~ll~~-p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~ 133 (135)
+|+|+++|++||.+|++||.+ |++++|+|.+||++|++| ++|.++||+|+++||.
T Consensus 106 ~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~A~ 167 (167)
T 3fn1_B 106 SIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR 167 (167)
T ss_dssp SSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 799999999999999999999 799999999999999999 9999999999999984
No 28
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=4.9e-47 Score=268.83 Aligned_cols=129 Identities=33% Similarity=0.558 Sum_probs=124.8
Q ss_pred CCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccC-CCceeccCCCCcCCCcc
Q 032708 6 LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSSAY 84 (135)
Q Consensus 6 ~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~W~p~~ 84 (135)
.|+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|+++|+|++
T Consensus 17 ~~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~~G~iCl~il~~~W~p~~ 96 (152)
T 2onu_A 17 AGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLY 96 (152)
T ss_dssp HTCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTTCBBCHHHHHHHCCTTC
T ss_pred CCCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCcCCeEecccccccCCCCC
Confidence 37889999999999999999999999999999999999999999999999999999999995 99999999999999999
Q ss_pred cHHHHHHH-HHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032708 85 DCRTILLS-IQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 134 (135)
Q Consensus 85 ~i~~il~~-i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~~ 134 (135)
+|.+||.+ |++||.+|++++|+|.+||++|+++ ++|.++||+++++||.+
T Consensus 97 ~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a~~ 148 (152)
T 2onu_A 97 SLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYASK 148 (152)
T ss_dssp CHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHSCG
T ss_pred CHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccC
Confidence 99999999 6899999999999999999999999 99999999999999975
No 29
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=1.8e-46 Score=266.30 Aligned_cols=133 Identities=26% Similarity=0.590 Sum_probs=125.0
Q ss_pred CCCCCCCeEEee-cCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCC-C
Q 032708 1 MSGGDLGVSAFP-EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ-D 78 (135)
Q Consensus 1 ~~~~~~gi~~~p-~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~-~ 78 (135)
++++++|+.+.+ +++|+++|+++|. |++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|. +
T Consensus 15 ~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~ 93 (154)
T 1c4z_D 15 RKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAE 93 (154)
T ss_dssp SSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTCBBCCTTTSSS
T ss_pred HhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCCCCEEECCCCCCC
Confidence 467889998665 6789999999998 999999999999999999999999999999999999999999999999996 8
Q ss_pred cCCCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032708 79 KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 134 (135)
Q Consensus 79 ~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~~ 134 (135)
+|+|+++|.+||.+|++||.+|++++|+|.+||++|+++ ++|.++||+|+++||.+
T Consensus 94 ~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 150 (154)
T 1c4z_D 94 NWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEK 150 (154)
T ss_dssp SCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC---
T ss_pred CCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999 99999999999999975
No 30
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=2.1e-46 Score=272.71 Aligned_cols=131 Identities=36% Similarity=0.711 Sum_probs=125.7
Q ss_pred CCCCCCeEEe-ecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCC---
Q 032708 2 SGGDLGVSAF-PEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ--- 77 (135)
Q Consensus 2 ~~~~~gi~~~-p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~--- 77 (135)
+++++||++. ++++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.
T Consensus 21 ~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G~iClsiL~~~~ 100 (183)
T 3rz3_A 21 EEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPV 100 (183)
T ss_dssp HSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTTBCTTSBBCCTTC----
T ss_pred hCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCCCCCCCcEehhhcCccc
Confidence 5789999999 678899999999999999999999999999999999999999999999999999999999999996
Q ss_pred ----------CcCCCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhc------h-HHHHHHHHHHHHhhc
Q 032708 78 ----------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN------K-EDYRKMVQKQYFAGE 132 (135)
Q Consensus 78 ----------~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~------~-~~f~~~~~~~~~~~a 132 (135)
++|+|+++|++||++|++||.+|++++|+|.+||.+|++ + ++|.++||++++++.
T Consensus 101 ~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~~~v~~~v~~s~ 172 (183)
T 3rz3_A 101 DDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGTK 172 (183)
T ss_dssp ----------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred ccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999998 7 999999999999875
No 31
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=6.1e-46 Score=265.18 Aligned_cols=130 Identities=32% Similarity=0.578 Sum_probs=125.1
Q ss_pred CCCCCeEEe-ecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCCCcCC
Q 032708 3 GGDLGVSAF-PEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWS 81 (135)
Q Consensus 3 ~~~~gi~~~-p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~ 81 (135)
++++||++. ++++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|+++|+
T Consensus 19 ~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~ 97 (160)
T 1y8x_A 19 NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWK 97 (160)
T ss_dssp CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCBBCCGGGTTTCC
T ss_pred CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcCCCCCeEEcccchhhcc
Confidence 468899998 8899999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032708 82 SAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 133 (135)
Q Consensus 82 p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~ 133 (135)
|+++|++||.+|++||.+|++++|+|.+||++|+++ ++|.++||++++....
T Consensus 98 p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~~~~ 150 (160)
T 1y8x_A 98 PVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYI 150 (160)
T ss_dssp TTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHSEEE
T ss_pred CCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhCcc
Confidence 999999999999999999999999999999999999 9999999999987544
No 32
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.6e-46 Score=270.28 Aligned_cols=128 Identities=35% Similarity=0.703 Sum_probs=123.2
Q ss_pred CCCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccc-cCCCceeccCCC--C
Q 032708 2 SGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV-DQYGNICLDILQ--D 78 (135)
Q Consensus 2 ~~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni-~~~G~icl~~l~--~ 78 (135)
+++++||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||||| +.+|.||+++|+ +
T Consensus 37 ~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~~ 116 (169)
T 1yrv_A 37 ENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPE 116 (169)
T ss_dssp HHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBCTTTCCBCCHHHHCGG
T ss_pred hCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCcccCCCCeEeehhhcCCc
Confidence 4688999999999999999999999999999999999999999999999999999999999999 789999999998 8
Q ss_pred cCCCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHh
Q 032708 79 KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFA 130 (135)
Q Consensus 79 ~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~ 130 (135)
+|+|+++|++||.+|++||.+|++++|+|.+||++|++| ++|.++ |+++++
T Consensus 117 ~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~~ 168 (169)
T 1yrv_A 117 KWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFNR 168 (169)
T ss_dssp GCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC-
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhhC
Confidence 999999999999999999999999999999999999999 999999 888865
No 33
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=5.3e-46 Score=281.95 Aligned_cols=131 Identities=34% Similarity=0.598 Sum_probs=127.8
Q ss_pred CCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccC-CCceeccCCCCcCCC
Q 032708 4 GDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSS 82 (135)
Q Consensus 4 ~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~W~p 82 (135)
+++||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++|.++|+|
T Consensus 76 ~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~~G~ICL~iL~~~WsP 155 (253)
T 3e46_A 76 SKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 155 (253)
T ss_dssp HTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCCGGGTTCCCT
T ss_pred CCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCccCCccCCCCeeecccccCCCCC
Confidence 4789999999999999999999999999999999999999999999999999999999999995 999999999999999
Q ss_pred cccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032708 83 AYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 134 (135)
Q Consensus 83 ~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~~ 134 (135)
+++|++||++|++||.+|++++|+|.+||++|++| ++|.++||+|+++||..
T Consensus 156 ~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~~ 208 (253)
T 3e46_A 156 AMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 208 (253)
T ss_dssp TCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999 99999999999999964
No 34
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=3.8e-46 Score=268.98 Aligned_cols=126 Identities=36% Similarity=0.676 Sum_probs=95.5
Q ss_pred CCCCCCeEEeecC-CCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCC---
Q 032708 2 SGGDLGVSAFPEG-ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ--- 77 (135)
Q Consensus 2 ~~~~~gi~~~p~~-~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~--- 77 (135)
+++++||++.+.+ +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.
T Consensus 31 ~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPNV~~~G~IClsiL~~~~ 110 (172)
T 2awf_A 31 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPG 110 (172)
T ss_dssp HSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTCBBCCGGGSCC-
T ss_pred hCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCCCCCCCcEehhhcCCcc
Confidence 5789999999975 799999999999999999999999999999999999999999999999999999999999996
Q ss_pred ----------CcCCCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-H-HHHHHHHHH
Q 032708 78 ----------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-E-DYRKMVQKQ 127 (135)
Q Consensus 78 ----------~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~-~f~~~~~~~ 127 (135)
++|+|+++|++||.+|++||.+|++++|+|.+||++|+++ + +|.++||+|
T Consensus 111 ~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr~~ 172 (172)
T 2awf_A 111 EDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARC 172 (172)
T ss_dssp --------CTTSCCTTCCHHHHHHHHHHHHSCC-----------------------------
T ss_pred cccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHHhC
Confidence 6899999999999999999999999999999999999999 9 999999975
No 35
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.7e-45 Score=267.28 Aligned_cols=130 Identities=31% Similarity=0.550 Sum_probs=125.2
Q ss_pred CCCCCeEEe-ecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCCCcCC
Q 032708 3 GGDLGVSAF-PEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWS 81 (135)
Q Consensus 3 ~~~~gi~~~-p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~ 81 (135)
++++|+++. ++++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+
T Consensus 39 ~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNV~~~G~iCl~iL~~~W~ 117 (180)
T 2nvu_C 39 NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILREDWK 117 (180)
T ss_dssp CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTSBBCCGGGTTSCC
T ss_pred CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCCCCCCCcEEcccccccCC
Confidence 478899998 8899999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhcc
Q 032708 82 SAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 133 (135)
Q Consensus 82 p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~ 133 (135)
|+++|++||.+|+++|.+|++++|+|.+||++|+++ ++|.++||++++....
T Consensus 118 p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~~~~~ 170 (180)
T 2nvu_C 118 PVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYI 170 (180)
T ss_dssp TTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHSEEE
T ss_pred CCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhCCc
Confidence 999999999999999999999999999999999999 9999999999987543
No 36
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=4.6e-45 Score=263.36 Aligned_cols=127 Identities=28% Similarity=0.535 Sum_probs=122.5
Q ss_pred CeEEee-cCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEec-cccccccc-CCCceeccCCC-CcCCC
Q 032708 7 GVSAFP-EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET-MCFHPNVD-QYGNICLDILQ-DKWSS 82 (135)
Q Consensus 7 gi~~~p-~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t-~i~Hpni~-~~G~icl~~l~-~~W~p 82 (135)
|+.+.| +++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.| +||||||+ .+|.||+++|. ++|+|
T Consensus 36 ~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p 115 (172)
T 2y9m_A 36 IESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTP 115 (172)
T ss_dssp EEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECTTSCCCTTEETTTTEECCGGGSTTTCCT
T ss_pred eEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEEEEeeCCeecCCCcCCCCEEeccccCCCCCCC
Confidence 577888 8899999999999999999999999999999999999999999999 99999996 69999999998 89999
Q ss_pred cccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhc-h-HHHHHHHHHHHHhhcc
Q 032708 83 AYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN-K-EDYRKMVQKQYFAGEF 133 (135)
Q Consensus 83 ~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~-~-~~f~~~~~~~~~~~a~ 133 (135)
+++|++||.+|++||.+|++++|+|.+||++|++ | ++|.++||+|+++++.
T Consensus 116 ~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~~~~~~~~~~ 168 (172)
T 2y9m_A 116 VWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYFLAERER 168 (172)
T ss_dssp TCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHHHHHHHHHHC
T ss_pred cCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999 8 9999999999999874
No 37
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.5e-46 Score=270.43 Aligned_cols=128 Identities=33% Similarity=0.615 Sum_probs=123.9
Q ss_pred CCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccC-CCceeccCCCCcCCCcc
Q 032708 6 LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSSAY 84 (135)
Q Consensus 6 ~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~W~p~~ 84 (135)
+|+++.+. +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.++|+|++
T Consensus 40 ~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~~~G~ICL~iL~~~WsP~~ 118 (179)
T 2z5d_A 40 SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALY 118 (179)
T ss_dssp SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCHHHHHHHCCTTC
T ss_pred CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCCCCCeEeccccccCCCCCC
Confidence 57888887 67899999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred cHHHHHHH-HHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032708 85 DCRTILLS-IQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 134 (135)
Q Consensus 85 ~i~~il~~-i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~~ 134 (135)
+|++||.+ |++||.+|++++|+|.+||++|++| ++|.++||+|+++||.+
T Consensus 119 ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a~~ 170 (179)
T 2z5d_A 119 DLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATE 170 (179)
T ss_dssp CTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSSH
T ss_pred CHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence 99999999 9999999999999999999999999 99999999999999964
No 38
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=7.5e-45 Score=291.31 Aligned_cols=133 Identities=38% Similarity=0.701 Sum_probs=130.6
Q ss_pred CCCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCCCcCC
Q 032708 2 SGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWS 81 (135)
Q Consensus 2 ~~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~ 81 (135)
+++++||++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+
T Consensus 17 ~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~il~~~W~ 96 (399)
T 4ddg_A 17 RDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWS 96 (399)
T ss_dssp HSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBCTTCBBCCGGGTTSCC
T ss_pred hCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccCCCCeEeCcccccCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032708 82 SAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 134 (135)
Q Consensus 82 p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~~ 134 (135)
|++||++||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++||..
T Consensus 97 p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a~~ 150 (399)
T 4ddg_A 97 PALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAMG 150 (399)
T ss_dssp TTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHTSC
T ss_pred ccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999 99999999999999975
No 39
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=4.6e-44 Score=261.65 Aligned_cols=130 Identities=32% Similarity=0.519 Sum_probs=125.1
Q ss_pred CCCCeEEe----ecCCCce---EEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCC
Q 032708 4 GDLGVSAF----PEGESIF---TWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL 76 (135)
Q Consensus 4 ~~~gi~~~----p~~~~~~---~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l 76 (135)
+++|+++. ++++|++ +|+++|. |++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|
T Consensus 43 ~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G~iCl~iL 121 (190)
T 3o2u_A 43 LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNIL 121 (190)
T ss_dssp CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECSCCCCTTBCTTSBBCCGGG
T ss_pred CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEecCcccCCCCCCCeEechhc
Confidence 67899998 8899999 9999997 78899999999999999999999999999999999999999999999999
Q ss_pred CCcCCCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032708 77 QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 134 (135)
Q Consensus 77 ~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~~ 134 (135)
.++|+|+++|++||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|++++...
T Consensus 122 ~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~~~~~~~ 180 (190)
T 3o2u_A 122 REDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGGSIE 180 (190)
T ss_dssp TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHHHHHBTCEET
T ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999 99999999999887654
No 40
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-44 Score=261.01 Aligned_cols=123 Identities=31% Similarity=0.619 Sum_probs=118.6
Q ss_pred ecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccC-CCceeccCCCCcCCCcccHHHHH
Q 032708 12 PEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSSAYDCRTIL 90 (135)
Q Consensus 12 p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~-~G~icl~~l~~~W~p~~~i~~il 90 (135)
+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++|+++|+|+++|++||
T Consensus 32 ~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~~~G~iCl~iL~~~W~p~~~i~~vL 111 (171)
T 1yf9_A 32 YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIF 111 (171)
T ss_dssp EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCHHHHHHHCCTTCCTHHHH
T ss_pred CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcccCCeEeccccccCCCCCCcHHHHH
Confidence 35789999999999999999999999999999999999999999999999999995 99999999999999999999999
Q ss_pred HHH-HHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhccC
Q 032708 91 LSI-QSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 134 (135)
Q Consensus 91 ~~i-~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a~~ 134 (135)
.+| ++||.+|++++|+|.+||++|++| ++|.++||+++++||.+
T Consensus 112 ~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a~~ 157 (171)
T 1yf9_A 112 DVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHATP 157 (171)
T ss_dssp HTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcCh
Confidence 997 799999999999999999999999 99999999999999963
No 41
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=9.8e-42 Score=244.88 Aligned_cols=122 Identities=25% Similarity=0.532 Sum_probs=115.7
Q ss_pred CCCeEEeecCCCceEEEEEEEcCCCCCCC--CCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCCCcCCC
Q 032708 5 DLGVSAFPEGESIFTWIGTIEGGKGTMYE--GLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSS 82 (135)
Q Consensus 5 ~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~--gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~p 82 (135)
+.|+.+.++++|+++|+++|.||++|||+ ||.|+++|.||++||++||+|+|.|++|||||+.+|.||+++|+++|+|
T Consensus 37 ~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~il~~~W~p 116 (167)
T 4ds2_A 37 HSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTP 116 (167)
T ss_dssp SSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCEEEESSCCCCSSCCTTSCCCTHHHHTTCCT
T ss_pred CCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCEEEEeCCcccccCCCCCEEEcccCcCCCCC
Confidence 67999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHH-HHHHHhhcC--CCCCCcccHHHHHHhhch-HHHHHHHHH
Q 032708 83 AYDCRTIL-LSIQSLLGE--PNPESPLNSYAAALLNNK-EDYRKMVQK 126 (135)
Q Consensus 83 ~~~i~~il-~~i~~ll~~--p~~~~p~n~~a~~~~~~~-~~f~~~~~~ 126 (135)
+++++++| ..|++|+.+ |++++|+|.+||++|++| ++|.++||+
T Consensus 117 ~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~~~vrr 164 (167)
T 4ds2_A 117 DQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVRR 164 (167)
T ss_dssp TSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHHHHHHTT
T ss_pred CCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHHHHHHhh
Confidence 99999965 467778874 899999999999999999 999999983
No 42
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=2e-40 Score=258.06 Aligned_cols=127 Identities=28% Similarity=0.441 Sum_probs=120.3
Q ss_pred CeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecc-----cccccccCCCceeccCCC----
Q 032708 7 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM-----CFHPNVDQYGNICLDILQ---- 77 (135)
Q Consensus 7 gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~-----i~Hpni~~~G~icl~~l~---- 77 (135)
++.+.++++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ +|||||+.+|.||+++|.
T Consensus 99 ~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~~~ifHPNV~~~G~ICLsiL~~~~g 178 (323)
T 3ceg_A 99 SVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHG 178 (323)
T ss_dssp CEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTTTCCCBTTBCTTCBBCCGGGTSSCC
T ss_pred ceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCCcccccCCCCcCCeEechhhccccC
Confidence 56778889999999999999999999999999999999999999999999998 999999999999999997
Q ss_pred ---CcCCCcc-cHHHHHHHHHHhhc--CCCCCCcccHHH--HHHhhch-HHHHHHHHHHHHhhcc
Q 032708 78 ---DKWSSAY-DCRTILLSIQSLLG--EPNPESPLNSYA--AALLNNK-EDYRKMVQKQYFAGEF 133 (135)
Q Consensus 78 ---~~W~p~~-~i~~il~~i~~ll~--~p~~~~p~n~~a--~~~~~~~-~~f~~~~~~~~~~~a~ 133 (135)
++|+|++ ||.+||++|++||. +|++++|+|.++ +.+|.++ ++|.++||+++++||+
T Consensus 179 ~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~Y~~~vr~~t~k~A~ 243 (323)
T 3ceg_A 179 RPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWAM 243 (323)
T ss_dssp CGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 6899999 89999999999996 788899999987 6789999 9999999999999996
No 43
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=7.9e-41 Score=237.75 Aligned_cols=115 Identities=30% Similarity=0.475 Sum_probs=106.0
Q ss_pred CC-CCCCeEEeecC-C--CceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCce---ecc
Q 032708 2 SG-GDLGVSAFPEG-E--SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNI---CLD 74 (135)
Q Consensus 2 ~~-~~~gi~~~p~~-~--~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~i---cl~ 74 (135)
++ +++||++.+.+ + |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|.| |++
T Consensus 35 ~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNV~~~G~icisCL~ 114 (156)
T 2q0v_A 35 KGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLH 114 (156)
T ss_dssp CC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTSBBCGGGSH
T ss_pred hCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccccCCCccCCeEehhhcc
Confidence 45 78899999853 3 59999999999999999999999999999999999999999999999999999999 899
Q ss_pred CCCCcCCCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch
Q 032708 75 ILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK 117 (135)
Q Consensus 75 ~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~ 117 (135)
+|+ +|+|+++|++||.+|++||.+|++++|+|.+||.+|.+|
T Consensus 115 iL~-~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y~~n 156 (156)
T 2q0v_A 115 ILK-NWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN 156 (156)
T ss_dssp HHH-TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC---
T ss_pred ccc-CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHhhhC
Confidence 987 599999999999999999999999999999999999875
No 44
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=1e-39 Score=224.42 Aligned_cols=103 Identities=31% Similarity=0.520 Sum_probs=94.8
Q ss_pred CCCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeccc-ccccccCCCceeccCCCCcC
Q 032708 2 SGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMC-FHPNVDQYGNICLDILQDKW 80 (135)
Q Consensus 2 ~~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~Hpni~~~G~icl~~l~~~W 80 (135)
+++++|+++.++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |||||+.+|.||+++|+++|
T Consensus 20 ~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~~G~iCl~iL~~~W 99 (125)
T 2fo3_A 20 NNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDY 99 (125)
T ss_dssp HSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCTTSBBCCGGGTTTC
T ss_pred hCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcCCCCCEEEchhcCCCC
Confidence 57889999999999999999999999999999999999999999999999999999996 99999999999999999999
Q ss_pred CCcccHHHHHHHHHHhhcCCCCCC
Q 032708 81 SSAYDCRTILLSIQSLLGEPNPES 104 (135)
Q Consensus 81 ~p~~~i~~il~~i~~ll~~p~~~~ 104 (135)
+|++||++||.+|++||.+|+...
T Consensus 100 ~P~~~i~~vl~si~~ll~~p~~~~ 123 (125)
T 2fo3_A 100 NPSLSISGLVLSIISMLSSAKEKK 123 (125)
T ss_dssp CTTCCHHHHHHHHHHHHC------
T ss_pred CCCCcHHHHHHHHHHHHhCccccc
Confidence 999999999999999999998753
No 45
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=6.3e-39 Score=223.40 Aligned_cols=101 Identities=30% Similarity=0.514 Sum_probs=97.8
Q ss_pred CCCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeccc-ccccccCCCceeccCCCCcC
Q 032708 2 SGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMC-FHPNVDQYGNICLDILQDKW 80 (135)
Q Consensus 2 ~~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~Hpni~~~G~icl~~l~~~W 80 (135)
+++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |||||+.+|.||+++|+++|
T Consensus 34 ~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~~G~ICl~iL~~~W 113 (136)
T 2h2y_A 34 KNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLGDDY 113 (136)
T ss_dssp HSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTTBCTTCCBCCGGGTTTC
T ss_pred hCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCcCCCCCEEECccccCCC
Confidence 57889999999999999999999999999999999999999999999999999999996 99999999999999999999
Q ss_pred CCcccHHHHHHHHHHhhcCCCC
Q 032708 81 SSAYDCRTILLSIQSLLGEPNP 102 (135)
Q Consensus 81 ~p~~~i~~il~~i~~ll~~p~~ 102 (135)
+|+++|++||.+|++||.+|+.
T Consensus 114 sP~~ti~~vL~si~sll~~p~~ 135 (136)
T 2h2y_A 114 NPSLSISGLILSIISMLSSAKE 135 (136)
T ss_dssp CTTCCHHHHHHHHHHHHSSSCC
T ss_pred CCCCcHHHHHHHHHHHHhCcCc
Confidence 9999999999999999999874
No 46
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=3.6e-39 Score=229.88 Aligned_cols=110 Identities=27% Similarity=0.428 Sum_probs=102.7
Q ss_pred CCCCCC-eEEee-cCCC--ceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeccccccccc-CCCceeccCC
Q 032708 2 SGGDLG-VSAFP-EGES--IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD-QYGNICLDIL 76 (135)
Q Consensus 2 ~~~~~g-i~~~p-~~~~--~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~-~~G~icl~~l 76 (135)
+++++| +++.+ +++| +++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+ .+|+||+++|
T Consensus 39 ~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPNV~~~~G~ICl~iL 118 (160)
T 2a4d_A 39 KGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAI 118 (160)
T ss_dssp SCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTCBBCGGGS
T ss_pred hCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCceeCCEECCCCEEehhhc
Confidence 567788 78877 4554 89999999999999999999999999999999999999999999999999 5999999999
Q ss_pred C--CcCCCcccHHHHHHHHHHhhc-CCCCCCcccHHHH
Q 032708 77 Q--DKWSSAYDCRTILLSIQSLLG-EPNPESPLNSYAA 111 (135)
Q Consensus 77 ~--~~W~p~~~i~~il~~i~~ll~-~p~~~~p~n~~a~ 111 (135)
. ++|+|+++|++||.+|++||. +|++++|+|.|||
T Consensus 119 ~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 156 (160)
T 2a4d_A 119 SVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 156 (160)
T ss_dssp HHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTC
T ss_pred CCccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhc
Confidence 8 899999999999999999995 7999999999987
No 47
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=6e-40 Score=229.05 Aligned_cols=112 Identities=26% Similarity=0.427 Sum_probs=102.1
Q ss_pred CC-CCCCeEEeecC-C--CceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCC-Cce--ecc
Q 032708 2 SG-GDLGVSAFPEG-E--SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY-GNI--CLD 74 (135)
Q Consensus 2 ~~-~~~gi~~~p~~-~--~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~-G~i--cl~ 74 (135)
++ +++|+++.+.+ + |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+ |.| |++
T Consensus 20 ~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~~G~i~~cL~ 99 (138)
T 1jat_B 20 KGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFH 99 (138)
T ss_dssp C----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTCBBCTTSH
T ss_pred hcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcccccCCEeCCCCEEeeecc
Confidence 45 78899999853 3 59999999999999999999999999999999999999999999999999995 999 999
Q ss_pred CCCCcCCCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHh
Q 032708 75 ILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL 114 (135)
Q Consensus 75 ~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~ 114 (135)
+++ +|+|+++|++||.+|++||.+|++++|+|.+|+.+|
T Consensus 100 ~l~-~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~~y 138 (138)
T 1jat_B 100 TLR-DWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 138 (138)
T ss_dssp HHH-TCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred cCC-CCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhhcC
Confidence 886 899999999999999999999999999999988654
No 48
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=1e-38 Score=229.62 Aligned_cols=110 Identities=27% Similarity=0.428 Sum_probs=102.0
Q ss_pred CCCCCC-eEEee-cCCC--ceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEeccccccccc-CCCceeccCC
Q 032708 2 SGGDLG-VSAFP-EGES--IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD-QYGNICLDIL 76 (135)
Q Consensus 2 ~~~~~g-i~~~p-~~~~--~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~-~~G~icl~~l 76 (135)
+++++| +++.+ +++| +++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+ .+|.||+++|
T Consensus 49 ~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPNV~~~~G~ICl~iL 128 (170)
T 2hlw_A 49 KGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAI 128 (170)
T ss_dssp HCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCCSSBCSSSCBBCTTTC
T ss_pred hCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccccCCEeCCCCEEEhhhc
Confidence 456778 67776 4554 99999999999999999999999999999999999999999999999999 6999999999
Q ss_pred C--CcCCCcccHHHHHHHHHHhhc-CCCCCCcccHHHH
Q 032708 77 Q--DKWSSAYDCRTILLSIQSLLG-EPNPESPLNSYAA 111 (135)
Q Consensus 77 ~--~~W~p~~~i~~il~~i~~ll~-~p~~~~p~n~~a~ 111 (135)
. ++|+|++||++||.+|++||. +|++++|+|.|||
T Consensus 129 ~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 166 (170)
T 2hlw_A 129 SVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 166 (170)
T ss_dssp HHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCC
T ss_pred CCCCCCCccCcHHHHHHHHHHHHccCCCCCCCCCcccc
Confidence 8 899999999999999999997 6999999999987
No 49
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=7.9e-38 Score=217.78 Aligned_cols=97 Identities=39% Similarity=0.725 Sum_probs=93.3
Q ss_pred CCCCCCeEEe--ecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccc--cccccCCCceeccCCC
Q 032708 2 SGGDLGVSAF--PEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF--HPNVDQYGNICLDILQ 77 (135)
Q Consensus 2 ~~~~~gi~~~--p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~--Hpni~~~G~icl~~l~ 77 (135)
+++++||++. ++++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++| ||||+.+|+||+++|+
T Consensus 36 ~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV~~~G~ICL~iL~ 115 (136)
T 2a7l_A 36 NDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILT 115 (136)
T ss_dssp HSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTBCTTCBBCCGGGT
T ss_pred hCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccCCCCCeEEchhcC
Confidence 5789999965 88999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CcCCCcccHHHHHHHHHHhhc
Q 032708 78 DKWSSAYDCRTILLSIQSLLG 98 (135)
Q Consensus 78 ~~W~p~~~i~~il~~i~~ll~ 98 (135)
++|+|+++|++||.+|++||.
T Consensus 116 ~~WsP~~ti~~vL~sI~slL~ 136 (136)
T 2a7l_A 116 EDWSPALSVQSVCLSIISMLS 136 (136)
T ss_dssp TTCCTTSCHHHHHHHHHHHTC
T ss_pred CCCCCCCcHHHHHHHHHHHhC
Confidence 999999999999999999984
No 50
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=8.9e-36 Score=217.29 Aligned_cols=102 Identities=30% Similarity=0.499 Sum_probs=91.1
Q ss_pred CCCCCCeEEeecCCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCC---CC
Q 032708 2 SGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL---QD 78 (135)
Q Consensus 2 ~~~~~gi~~~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l---~~ 78 (135)
+++++||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+ ||||+.+|.||+++| .+
T Consensus 28 ~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~~~~~G~ICL~iL~~~~~ 105 (187)
T 2f4w_A 28 KDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKCNTRLCLSITDFHPD 105 (187)
T ss_dssp HSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSSBCTTSCBC---------
T ss_pred hCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--CceeccCCeEeeeccccCcc
Confidence 5789999999999999999999999999999999999999999999999999999999 999999999999999 68
Q ss_pred cCCCcccHHHHHHHHHHhhcCCCCCCc
Q 032708 79 KWSSAYDCRTILLSIQSLLGEPNPESP 105 (135)
Q Consensus 79 ~W~p~~~i~~il~~i~~ll~~p~~~~p 105 (135)
+|+|+++|.+||.+|++||.+|+++..
T Consensus 106 ~W~P~~ti~~vL~si~sll~~p~p~~g 132 (187)
T 2f4w_A 106 TWNPAWSVSTILTGLLSFMVEKGPTLG 132 (187)
T ss_dssp -CCTTCCHHHHHHHHHHHHHSCCCCTT
T ss_pred CCCCcCcHHHHHHHHHHHhcCCCCCCc
Confidence 999999999999999999999887644
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=100.00 E-value=6.7e-37 Score=223.01 Aligned_cols=120 Identities=19% Similarity=0.344 Sum_probs=107.9
Q ss_pred CCCeEEeecCCCceEEEEEEEcC-CCCCCCC-----------CEEEEEEEcCCCCCCCCCeeEEecccccc-cccCCCce
Q 032708 5 DLGVSAFPEGESIFTWIGTIEGG-KGTMYEG-----------LSYKLSLRFPLDYPFKPPQVKFETMCFHP-NVDQYGNI 71 (135)
Q Consensus 5 ~~gi~~~p~~~~~~~w~~~i~Gp-~~tpy~g-----------g~f~~~i~fp~~YP~~pP~v~f~t~i~Hp-ni~~~G~i 71 (135)
++|+++.+.++|+++|+++|.|| ++|||+| |.|+++|.||++||++||+|+|.|++||| ||+.+|.|
T Consensus 47 ~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~PP~V~f~tpi~hPnnV~~~G~I 126 (186)
T 1zuo_A 47 TGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGAL 126 (186)
T ss_dssp TTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCCEEEEEESCEESTTBCGGGBB
T ss_pred CCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCCCCeEEEeCCccCCCccCCCCcE
Confidence 67899999999999999999998 9999998 89999999999999999999999999999 69999999
Q ss_pred eccCCC-CcCCCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032708 72 CLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE 132 (135)
Q Consensus 72 cl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a 132 (135)
|+++|. ++|+|+++|++||++|++||.+|+... .+.++ ++|.+++++++.+.+
T Consensus 127 CL~iL~~~~WsP~~ti~~VL~sI~slL~~p~a~~--------~~~~~~~~Y~~~~~~~~~~~~ 181 (186)
T 1zuo_A 127 CMELLTKQGWSSAYSIESVIMQINATLVKGKARV--------QFGANKNQYNLARAQQSYNSI 181 (186)
T ss_dssp CCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEE--------CTTCCTTCCCHHHHHHHHHHH
T ss_pred EeccCCCCCCCCcCcHHHHHHHHHHHHcCCChhH--------hhccCHHHHhHHHHHHHHHHH
Confidence 999997 789999999999999999999886532 34555 778788777776653
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.90 E-value=2.7e-25 Score=157.47 Aligned_cols=97 Identities=14% Similarity=0.274 Sum_probs=81.8
Q ss_pred eecCCCceEEEEEEEcCCCCCCCCC----------EEEEEEEcCCCCCCCCCeeEEecc-cccccccCCCceeccCC-CC
Q 032708 11 FPEGESIFTWIGTIEGGKGTMYEGL----------SYKLSLRFPLDYPFKPPQVKFETM-CFHPNVDQYGNICLDIL-QD 78 (135)
Q Consensus 11 ~p~~~~~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~f~t~-i~Hpni~~~G~icl~~l-~~ 78 (135)
.+..+|++.|.+.+.||.||+|+|| .|+++|.||++||.+||+|+|.+. ++||||+.+|+||||++ +.
T Consensus 49 ~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~~~~hpnmY~~G~ICLdIL~kp 128 (172)
T 2z6o_A 49 ENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKP 128 (172)
T ss_dssp HHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCSSBCTTSBBCCCTTHHH
T ss_pred ccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCCCCCCCCCCCCCcEechhhccc
Confidence 4556789999999999999999999 999999999999999999999998 99999999999999999 43
Q ss_pred ---cCCCcccHHHHHHHHHHhhcCCCCCCcccHHHHHHhh
Q 032708 79 ---KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN 115 (135)
Q Consensus 79 ---~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~ 115 (135)
.|+|.++|.++|.- -...++..|+..+..
T Consensus 129 ~Ws~~~P~~~IahiL~l--------gl~pwla~eip~lv~ 160 (172)
T 2z6o_A 129 LWARNVPKFGLAHLMAL--------GLGPWLAVEIPDLIQ 160 (172)
T ss_dssp HHHHHTTSCCHHHHHHH--------THHHHHHHHHHHHHH
T ss_pred cccccCCccCHHHHHhh--------ccCchhhhhhHHHHH
Confidence 45699999998743 223345556655543
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.84 E-value=4.3e-21 Score=136.46 Aligned_cols=95 Identities=26% Similarity=0.403 Sum_probs=82.7
Q ss_pred EEeecCCCceEEEEEEEcCCCCCCCCCE---EEEEEEcCCCCCCCCCeeEEecc----------cc-cccccCCCceecc
Q 032708 9 SAFPEGESIFTWIGTIEGGKGTMYEGLS---YKLSLRFPLDYPFKPPQVKFETM----------CF-HPNVDQYGNICLD 74 (135)
Q Consensus 9 ~~~p~~~~~~~w~~~i~Gp~~tpy~gg~---f~~~i~fp~~YP~~pP~v~f~t~----------i~-Hpni~~~G~icl~ 74 (135)
.+...++...++.+.+.|.-.++|+|++ |.+.|.||++||++||.|.|.++ |+ |||||.+|+||++
T Consensus 52 ~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~~~~~~I~~hpnVD~~G~I~lp 131 (162)
T 3r3q_A 52 RVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALP 131 (162)
T ss_dssp EEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTTTSCTTSTHHHHBCTTSBBCCG
T ss_pred eeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCccccccccccCCCCCCCCCCcEeCc
Confidence 3445566667777888887779999999 88999999999999999988651 77 9999999999999
Q ss_pred CCCCcCCC-cccHHHHHHHHHHhhcCCCCCC
Q 032708 75 ILQDKWSS-AYDCRTILLSIQSLLGEPNPES 104 (135)
Q Consensus 75 ~l~~~W~p-~~~i~~il~~i~~ll~~p~~~~ 104 (135)
+|. +|++ +.++.++|.+|+++|.+|+++.
T Consensus 132 yL~-~W~p~~s~L~~ll~~l~~lf~ep~~d~ 161 (162)
T 3r3q_A 132 ILH-AWDPAAMNLIMVVQELMSLLHEPPQDQ 161 (162)
T ss_dssp GGG-SCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred ccc-cCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 994 6999 6799999999999999999875
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.64 E-value=2.9e-17 Score=114.22 Aligned_cols=64 Identities=19% Similarity=0.505 Sum_probs=59.0
Q ss_pred eEEEEEEEcCCCCCCCCC----------EEEEEEEcCCCCCCCCCeeEEecc-cccccccCCCceeccCCCCcCCCcc
Q 032708 18 FTWIGTIEGGKGTMYEGL----------SYKLSLRFPLDYPFKPPQVKFETM-CFHPNVDQYGNICLDILQDKWSSAY 84 (135)
Q Consensus 18 ~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~f~t~-i~Hpni~~~G~icl~~l~~~W~p~~ 84 (135)
..|...+.||.||+|.|+ .|++++.||.+||.+||.|+|.+. .+|||++.+|+|||+++ |+|.+
T Consensus 58 ~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~ldgkt~kmYr~GkICLdIh---wkPlW 132 (168)
T 3kpa_A 58 SHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPELEGKTVKMYRGGKICMTTH---FFPLW 132 (168)
T ss_dssp CCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCSSEETTTEECCCTT---HHHHH
T ss_pred CCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecccccCcCccccCCCcEEeccc---cchhh
Confidence 479999999999999999 999999999999999999999995 89999999999999986 65553
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.64 E-value=4.6e-16 Score=108.81 Aligned_cols=79 Identities=27% Similarity=0.516 Sum_probs=70.7
Q ss_pred CCCceEEEEEEEcCCCCCCCCCEEEE--EEEcCCCCCCCCCeeEEecc------cccccccCCCceeccCCCCcCCC-cc
Q 032708 14 GESIFTWIGTIEGGKGTMYEGLSYKL--SLRFPLDYPFKPPQVKFETM------CFHPNVDQYGNICLDILQDKWSS-AY 84 (135)
Q Consensus 14 ~~~~~~w~~~i~Gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~f~t~------i~Hpni~~~G~icl~~l~~~W~p-~~ 84 (135)
..+++.|.++|. .+|+|++|.+ .|.||++||++||.| |.++ ..|||||.+|+||++.|.+ |++ ..
T Consensus 50 ~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~~-W~~~~s 123 (146)
T 3obq_A 50 SRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLHE-WKHPQS 123 (146)
T ss_dssp TCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHHHT-CCTTTC
T ss_pred hheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEecccccc-cCCCCC
Confidence 467899999998 5899999995 899999999999999 6655 5899999999999999965 987 78
Q ss_pred cHHHHHHHHHHhhc
Q 032708 85 DCRTILLSIQSLLG 98 (135)
Q Consensus 85 ~i~~il~~i~~ll~ 98 (135)
++.++|..|+++|.
T Consensus 124 nL~~ll~~l~~~F~ 137 (146)
T 3obq_A 124 DLLGLIQVMIVVFG 137 (146)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999997
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.11 E-value=0.04 Score=36.48 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=28.6
Q ss_pred ceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEec
Q 032708 17 IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET 58 (135)
Q Consensus 17 ~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 58 (135)
...+.+.|..-.+..-+.-.+.+.+.||++||..||.+...+
T Consensus 37 ~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 37 PPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp SCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred CCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 355666665322222234478899999999999999987654
No 57
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.60 E-value=0.28 Score=32.29 Aligned_cols=40 Identities=18% Similarity=0.341 Sum_probs=28.0
Q ss_pred ceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEe
Q 032708 17 IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFE 57 (135)
Q Consensus 17 ~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~ 57 (135)
...+.+.|.. .+..=..-.+.+.+.+|++||..+|.+...
T Consensus 39 ~~~f~i~l~~-~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~ 78 (128)
T 2ebk_A 39 GTVFRIHTKA-EGFMDADIPLELVFHLPVNYPSCLPGISIN 78 (128)
T ss_dssp CEEEEEEEEC-CTTTTCCCEEEEEEEECSSTTSSCCCCCCC
T ss_pred CCeEEEEecC-CCCCCCCeEEEEEEECCCCCCCCCCeEEEE
Confidence 4577777763 221111247899999999999999998644
No 58
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=94.25 E-value=0.15 Score=34.08 Aligned_cols=41 Identities=17% Similarity=0.275 Sum_probs=29.1
Q ss_pred ceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEec
Q 032708 17 IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET 58 (135)
Q Consensus 17 ~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 58 (135)
...+.+.|.+..+ .-..-.+.+.+.+|++||..+|.|...+
T Consensus 45 ~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 85 (138)
T 2yz0_A 45 QIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKN 85 (138)
T ss_dssp CSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred CcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEec
Confidence 4566777763322 1123478899999999999999998754
No 59
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=94.23 E-value=0.15 Score=35.09 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.6
Q ss_pred EEEEEEEcCCCCCCCCCeeEEec
Q 032708 36 SYKLSLRFPLDYPFKPPQVKFET 58 (135)
Q Consensus 36 ~f~~~i~fp~~YP~~pP~v~f~t 58 (135)
.+.++|.+|.+||..+|.|...+
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~ 98 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRS 98 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEEC
T ss_pred eEEEEEEcCCCCCCCCCcEEEEe
Confidence 79999999999999999997554
No 60
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=94.15 E-value=0.19 Score=33.12 Aligned_cols=42 Identities=19% Similarity=0.373 Sum_probs=28.4
Q ss_pred ceEEEEEEEcCCCCCC--CCCEEEEEEEcCCCCCCCCCeeEEec
Q 032708 17 IFTWIGTIEGGKGTMY--EGLSYKLSLRFPLDYPFKPPQVKFET 58 (135)
Q Consensus 17 ~~~w~~~i~Gp~~tpy--~gg~f~~~i~fp~~YP~~pP~v~f~t 58 (135)
...+.+.|..+.+..- ..-.+.+.+.+|++||..+|.|...+
T Consensus 39 ~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~ 82 (128)
T 2day_A 39 PWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRN 82 (128)
T ss_dssp CEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred CeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEc
Confidence 4455666653222111 12478899999999999999998775
No 61
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=91.47 E-value=0.14 Score=34.09 Aligned_cols=23 Identities=22% Similarity=0.557 Sum_probs=20.5
Q ss_pred CEEEEEEEcCCCCCCCCCeeEEe
Q 032708 35 LSYKLSLRFPLDYPFKPPQVKFE 57 (135)
Q Consensus 35 g~f~~~i~fp~~YP~~pP~v~f~ 57 (135)
-.+.+.|.||++||..+|.|...
T Consensus 63 ~~~~L~v~~p~~YP~~~P~i~l~ 85 (137)
T 1ukx_A 63 VQVELRVKCPPTYPDVVPEIDLK 85 (137)
T ss_dssp CEEEEEECCCTTTTSSCCCCEEE
T ss_pred eEEEEEEECCCCCCCCCCcEEEe
Confidence 46889999999999999999874
No 62
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=91.31 E-value=2.4 Score=30.13 Aligned_cols=66 Identities=15% Similarity=0.216 Sum_probs=48.7
Q ss_pred CCCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccccccccCCCceeccCCCCcCCCcccHHHHHHHH
Q 032708 14 GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSI 93 (135)
Q Consensus 14 ~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~icl~~l~~~W~p~~~i~~il~~i 93 (135)
+.++....+.+..-. |....++|.++.+||.++|.+...-|. |. .-.|++..++.+++...
T Consensus 22 d~~~~~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~------------~~~w~~~ssL~~v~~qF 82 (186)
T 3zqs_A 22 DTCFSTIKLKAEDAS-----GREHLITLKLKAKYPAESPDYFVDFPV--PF------------CASWTPQSSLISIYSQF 82 (186)
T ss_dssp CTTSSEEEEEEECTT-----SCEEEEEEECCTTTTTSCCEEECCCSS--CC------------CCCCCTTCCHHHHHHHH
T ss_pred cCCccEEEEEEEeCC-----CCeEEEEEEECCCCCCCCCeeEEcCCC--Cc------------ccccCCCccHHHHHHHH
Confidence 456778888887433 678999999999999999987543332 11 13699988988888777
Q ss_pred HHhhc
Q 032708 94 QSLLG 98 (135)
Q Consensus 94 ~~ll~ 98 (135)
+..+.
T Consensus 83 ~~~Le 87 (186)
T 3zqs_A 83 LAAIE 87 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
No 63
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=90.13 E-value=0.26 Score=33.59 Aligned_cols=23 Identities=22% Similarity=0.590 Sum_probs=20.3
Q ss_pred EEEEEEEcCCCCCCCCCeeEEec
Q 032708 36 SYKLSLRFPLDYPFKPPQVKFET 58 (135)
Q Consensus 36 ~f~~~i~fp~~YP~~pP~v~f~t 58 (135)
.+.+.+.+|.+||..||.+....
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~ 96 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRS 96 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEEC
T ss_pred eEEEEEECCCCCCCCCCeEEEEc
Confidence 68899999999999999997664
No 64
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=80.62 E-value=0.33 Score=31.70 Aligned_cols=32 Identities=3% Similarity=0.040 Sum_probs=0.0
Q ss_pred CCCCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032708 101 NPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE 132 (135)
Q Consensus 101 ~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a 132 (135)
....|.+.++|++|.++ +.|.+.||.|+.-+|
T Consensus 22 ~~~~PQDA~VA~qy~~~~~~f~~TAr~WT~~~a 54 (108)
T 2cwb_A 22 TTTEAVDAATAEKVFKQYANDNGVDGEWTYDDA 54 (108)
T ss_dssp ---------------------------------
T ss_pred ccCCchhHHHHHHHHhchhccccccccccccCc
Confidence 34668999999999999 999999999996555
No 65
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=37.99 E-value=99 Score=21.53 Aligned_cols=45 Identities=20% Similarity=0.283 Sum_probs=33.2
Q ss_pred CCceEEEEEEEcCCCCCCCCCEEEEEEEcCCCCCCCCCeeEEecccc
Q 032708 15 ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF 61 (135)
Q Consensus 15 ~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 61 (135)
+.-.+|.+.+.|+.+.--..-+=++...+.+.||. |.-.+..+.|
T Consensus 30 ~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~n--p~Rvv~~PPF 74 (175)
T 3rls_A 30 EHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPN--PVRSIEAPPF 74 (175)
T ss_dssp TCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSS--CEEEECSSSE
T ss_pred CCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCC--CcEEEeCCCC
Confidence 46689999999987654444567788889999975 6666666544
No 66
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=30.52 E-value=13 Score=17.15 Aligned_cols=17 Identities=29% Similarity=0.630 Sum_probs=9.9
Q ss_pred CCCCCeeEEeccccccc
Q 032708 48 PFKPPQVKFETMCFHPN 64 (135)
Q Consensus 48 P~~pP~v~f~t~i~Hpn 64 (135)
|+..|.-.|..+.|||-
T Consensus 4 pmtlpenyfserpyhpp 20 (26)
T 2jrw_A 4 PMTLPENYFSERPYHPP 20 (26)
T ss_dssp CCCCSSSSCCSSSCCSC
T ss_pred ccccchhhcccCCCCCC
Confidence 44455555666667763
No 67
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=29.91 E-value=50 Score=23.55 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=22.3
Q ss_pred CCCEEEEEEEcCCCCCC-----CCCeeEEec
Q 032708 33 EGLSYKLSLRFPLDYPF-----KPPQVKFET 58 (135)
Q Consensus 33 ~gg~f~~~i~fp~~YP~-----~pP~v~f~t 58 (135)
+.|.|.|+-.+|--||. .||.|.|.-
T Consensus 109 ~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~V 139 (209)
T 2bum_A 109 GTGFWSFNTIKPGAVPGRKGSTQAPHISLII 139 (209)
T ss_dssp TTCCEEEEEECCCCCBCSTTCBCCCCEEEEE
T ss_pred CCcEEEEEEEccCcccCCCCCccCcEEEEEE
Confidence 46889999999999998 789888763
No 68
>2k6w_A Putative uncharacterized protein TTHA1943; PCUA, copper transfer protein, metal transport; NMR {Thermus thermophilus} PDB: 2k6y_A 2k6z_A 2k70_A
Probab=22.81 E-value=1.1e+02 Score=19.71 Aligned_cols=27 Identities=22% Similarity=0.169 Sum_probs=23.6
Q ss_pred EEEEEEEcCCCCCCCCCEEEEEEEcCC
Q 032708 19 TWIGTIEGGKGTMYEGLSYKLSLRFPL 45 (135)
Q Consensus 19 ~w~~~i~Gp~~tpy~gg~f~~~i~fp~ 45 (135)
-.|+.+.|....+=+|..+.+++.|-+
T Consensus 81 G~HvML~gl~~~l~~G~~v~ltL~Fe~ 107 (120)
T 2k6w_A 81 GYHFMLLGLKRPLKAGEEVELDLLFAG 107 (120)
T ss_dssp TEEEEEEEESSCBCTTCEEEEEEEETT
T ss_pred ceEEEEeCCCCCCCCCCEEEEEEEECC
Confidence 368999999888889999999999964
No 69
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=22.64 E-value=1.8e+02 Score=19.46 Aligned_cols=43 Identities=14% Similarity=0.238 Sum_probs=32.4
Q ss_pred ceEEE--EEEEcCCCCCCC-CCEEEEEEEcCCCCCCCCCeeEEecccc
Q 032708 17 IFTWI--GTIEGGKGTMYE-GLSYKLSLRFPLDYPFKPPQVKFETMCF 61 (135)
Q Consensus 17 ~~~w~--~~i~Gp~~tpy~-gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 61 (135)
...|. +.+.|+.|.... .-+=++...+-+.|+ .|...+..+.|
T Consensus 32 ~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~--np~r~v~~pPF 77 (140)
T 3qrl_A 32 VRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFA--NPNRTFTDPPF 77 (140)
T ss_dssp CEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSS--SCEEEECSTTC
T ss_pred ccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCC--CCeEEEcCCCc
Confidence 46998 899999887664 456678888888887 48777776655
No 70
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=21.85 E-value=1.1e+02 Score=18.31 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=27.1
Q ss_pred HHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032708 93 IQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE 132 (135)
Q Consensus 93 i~~ll~~p~~~~p~n~~a~~~~~~~-~~f~~~~~~~~~~~a 132 (135)
|+.|+..-++...++.++..+..+= ++|...+-..+-+.|
T Consensus 11 L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lA 51 (76)
T 1h3o_B 11 LQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLA 51 (76)
T ss_dssp HHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443356677888888888777 888888776665544
No 71
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=21.76 E-value=1.4e+02 Score=17.75 Aligned_cols=34 Identities=15% Similarity=0.298 Sum_probs=26.2
Q ss_pred ccHHHHHHHHHHhhcCCCCCCcc-cHHHHHHhhch
Q 032708 84 YDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNK 117 (135)
Q Consensus 84 ~~i~~il~~i~~ll~~p~~~~p~-n~~a~~~~~~~ 117 (135)
.+-..|...|+.++..-+...|+ +...+.+++..
T Consensus 16 ~S~~~Ik~~Ik~lI~~Ed~~kPlSD~~I~~~L~~~ 50 (76)
T 2ahq_A 16 LTQGELMKLIKEIVENEDKRKPYSDQEIANILKEK 50 (76)
T ss_dssp CCHHHHHHHHHHHGGGCCSSSCCCHHHHHHHHTTT
T ss_pred ccHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc
Confidence 46678889999999988888888 55667666543
No 72
>3pft_A Flavin reductase; desulfurization, oxidoreductase; HET: FMN; 1.60A {Mycobacterium goodii} SCOP: b.45.1.0
Probab=21.74 E-value=44 Score=22.31 Aligned_cols=30 Identities=20% Similarity=0.525 Sum_probs=24.4
Q ss_pred CCCCeeEEe---cccccccccCCCceeccCCCC
Q 032708 49 FKPPQVKFE---TMCFHPNVDQYGNICLDILQD 78 (135)
Q Consensus 49 ~~pP~v~f~---t~i~Hpni~~~G~icl~~l~~ 78 (135)
..||.|.+. +.--|++|..+|..|+++|.+
T Consensus 42 ~~PP~v~v~i~~~~~t~~~i~~~~~F~Vnvl~~ 74 (157)
T 3pft_A 42 LEPPLVAFAVQNSSTTWPKLKDLPSLGISVLGE 74 (157)
T ss_dssp TTTTEEEEEEETTCSSHHHHTTSSCEEEEECBT
T ss_pred CCCcEEEEEECCCCchHHHHHhCCEEEEEECCH
Confidence 468988875 346789999999999999964
No 73
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=21.73 E-value=1.2e+02 Score=17.76 Aligned_cols=28 Identities=18% Similarity=-0.054 Sum_probs=22.7
Q ss_pred cccHHHHHHhhch-HHHHHHHHHHHHhhc
Q 032708 105 PLNSYAAALLNNK-EDYRKMVQKQYFAGE 132 (135)
Q Consensus 105 p~n~~a~~~~~~~-~~f~~~~~~~~~~~a 132 (135)
.++.++++.+..+ +...+.+-+.+.+++
T Consensus 23 ~lsddaa~~LA~dvEyr~~eI~qeA~kfm 51 (70)
T 1taf_B 23 SLSDDAAKELAEDVSIKLKRIVQDAAKFM 51 (70)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888999999999 888887777776664
No 74
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=21.59 E-value=55 Score=21.38 Aligned_cols=34 Identities=12% Similarity=0.244 Sum_probs=20.6
Q ss_pred cccCCCceeccCCCCcCCCcccHHHHHHHHHHhh
Q 032708 64 NVDQYGNICLDILQDKWSSAYDCRTILLSIQSLL 97 (135)
Q Consensus 64 ni~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll 97 (135)
-|+++|+|-............+..+++..|+++|
T Consensus 138 liD~~G~i~~~~~~~~~~~~~~~~~ll~~l~~ll 171 (171)
T 2yzh_A 138 IIDKEGKVAYVQLVPEITEEPNYDEVVNKVKELI 171 (171)
T ss_dssp EECTTSBEEEEEECSBTTSCCCCHHHHHHHHHC-
T ss_pred EEcCCCeEEEEEeCCCcCCCCCHHHHHHHHHhhC
Confidence 4566788765544333334446778888887764
No 75
>1q8c_A Hypothetical protein Mg027; structural genomics, NUSB, GI 3 BSGC structure funded by NIH, protein structure initiative; 2.00A {Mycoplasma genitalium} SCOP: a.79.1.2
Probab=20.76 E-value=1.7e+02 Score=18.94 Aligned_cols=36 Identities=17% Similarity=0.291 Sum_probs=27.1
Q ss_pred CCCCCCcccH---HHHHHhhch-HHHHHHHHHHHHhhccC
Q 032708 99 EPNPESPLNS---YAAALLNNK-EDYRKMVQKQYFAGEFE 134 (135)
Q Consensus 99 ~p~~~~p~n~---~a~~~~~~~-~~f~~~~~~~~~~~a~~ 134 (135)
...++.|+|. ++.+.|.++ -+|.+++.++-++.-.|
T Consensus 46 yd~~er~ln~wqk~ivk~fse~~~~f~~~ie~qq~~nq~e 85 (151)
T 1q8c_A 46 YDTKERQLNEWQKLIVKAFSENIFSFQKKIEEQQLKNQLE 85 (151)
T ss_dssp TCCTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred cCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777775 677888999 99999999988765443
Done!