BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032710
(135 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P21864|ISPH_PSEFL 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (Fragment)
OS=Pseudomonas fluorescens GN=ispH PE=3 SV=1
Length = 180
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 48 HEELANKFDLKTLRALGFILMEHLKEKVKD--LSLFPGSAEPLAF---VAGCNLLKCDND 102
HE + NKF ++ LRA G I +E L ++VKD + +F A AG L D
Sbjct: 37 HEVVHNKFVVEDLRARGAIFVEEL-DQVKDDVIVIFSAHGVSQAVRTEAAGRGLKVFD-- 93
Query: 103 DILTVEKLKTCLHIDLKRYGKAAKVSLLL 131
L T +HI++ RY + + +L+
Sbjct: 94 ---ATCPLVTKVHIEVARYSRDGRECILI 119
>sp|Q7NS59|ISPH_CHRVO 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
OS=Chromobacterium violaceum (strain ATCC 12472 / DSM
30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)
GN=ispH PE=3 SV=1
Length = 311
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 48 HEELANKFDLKTLRALGFILMEHLKEKVKDLSL-FPGSAEPLAFVAGCNLLKCDNDDILT 106
HE + N+F + LR G + +E LK+ +L + PL+ A L D
Sbjct: 39 HEVVHNRFVVDDLRGKGAVFIEELKDVPPGSTLIYSAHGVPLSVRAEAEALGLTVFDATC 98
Query: 107 VEKLKTCLHIDLKRYGKAA 125
L T +H+++KR KA
Sbjct: 99 --PLVTKVHVEVKRMNKAG 115
>sp|Q46751|CARR_PECCC Transcriptional activator protein CarR OS=Pectobacterium
carotovorum subsp. carotovorum GN=carR PE=3 SV=1
Length = 244
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 21 LCSLSESEVDMLISLKLLILQRAKVIGHEELANKFDLK-TLRALGFILMEHLKEKVKDLS 79
L S E+EV L+S + ++++G E+ KF + ++R L I H K +L+
Sbjct: 168 LLSPRETEVLFLVSSGRTYKEVSRILGISEVTVKFHINNSVRKLDVINSRHAITKALELN 227
Query: 80 LFPGSAEPL 88
LF EP+
Sbjct: 228 LFHSPCEPV 236
>sp|A5A6I6|TRFE_PANTR Serotransferrin OS=Pan troglodytes GN=TF PE=2 SV=1
Length = 698
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 69 EHLKEKVKDLSLFPGSAEPLAFVAGCNLLKCDNDDILTVEKLKTCLHIDLKR 120
++L EK +L G+ +P+ A C+L + N ++T + + C+H L++
Sbjct: 571 KNLNEKDYELLCLDGTRKPVKEYANCHLARAPNHAVVTRKDKEACVHKILRQ 622
>sp|P02787|TRFE_HUMAN Serotransferrin OS=Homo sapiens GN=TF PE=1 SV=3
Length = 698
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 69 EHLKEKVKDLSLFPGSAEPLAFVAGCNLLKCDNDDILTVEKLKTCLHIDLKR 120
++L EK +L G+ +P+ A C+L + N ++T + + C+H L++
Sbjct: 571 KNLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACVHKILRQ 622
>sp|C3KDX7|ISPH_PSEFS 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Pseudomonas
fluorescens (strain SBW25) GN=ispH PE=3 SV=1
Length = 315
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 48 HEELANKFDLKTLRALGFILMEHLKEKVKDLSLF---PGSAEPLAFVAGCNLLKCDNDDI 104
HE + NKF ++ LRA G I +E L + D+ + G ++ + A LK +
Sbjct: 37 HEVVHNKFVVEDLRARGAIFVEELDQVPDDVIVIFSAHGVSQAVRTEAAGRGLKVFD--- 93
Query: 105 LTVEKLKTCLHIDLKRYGKAAKVSLLL 131
L T +HI++ RY + + +L+
Sbjct: 94 -ATCPLVTKVHIEVARYSRDGRECILI 119
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,743,132
Number of Sequences: 539616
Number of extensions: 1637201
Number of successful extensions: 3799
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3795
Number of HSP's gapped (non-prelim): 15
length of query: 135
length of database: 191,569,459
effective HSP length: 100
effective length of query: 35
effective length of database: 137,607,859
effective search space: 4816275065
effective search space used: 4816275065
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)