Query 032710
Match_columns 135
No_of_seqs 14 out of 16
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 07:35:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032710.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032710hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b6c_B TGF-B superfamily recep 24.7 1.7E+02 0.0057 21.0 5.5 26 97-122 314-339 (342)
2 2xa6_A KH domain-containing\,R 19.7 31 0.0011 21.7 0.6 15 78-92 18-32 (41)
3 1nb0_A Hypothetical protein FL 18.5 50 0.0017 24.2 1.6 16 105-120 109-124 (147)
4 1n08_A Putative riboflavin kin 16.9 57 0.0019 24.4 1.6 16 105-120 127-142 (163)
5 2fho_A Spliceosomal protein SF 16.8 45 0.0015 21.2 0.9 11 22-32 20-30 (47)
6 3hmm_A TGF-beta receptor type- 13.7 3.7E+02 0.013 20.1 5.4 19 97-115 275-293 (303)
7 3bnw_A Riboflavin kinase, puta 13.4 79 0.0027 24.1 1.6 16 105-120 131-146 (181)
8 3hug_A RNA polymerase sigma fa 13.3 2.6E+02 0.0088 17.3 4.8 55 18-78 32-88 (92)
9 3g2f_A Bone morphogenetic prot 12.9 3.1E+02 0.011 19.6 4.6 34 89-124 290-323 (336)
10 3ll6_A Cyclin G-associated kin 12.1 2.7E+02 0.0092 19.6 4.0 58 59-118 235-307 (337)
No 1
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=24.71 E-value=1.7e+02 Score=20.95 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=19.2
Q ss_pred ccCCCCccccHHHHHHhhhhhhhhhc
Q 032710 97 LKCDNDDILTVEKLKTCLHIDLKRYG 122 (135)
Q Consensus 97 Lk~~~~d~~~iEEl~t~i~~d~~r~~ 122 (135)
|..+|++-.|++|+...+..=.+++|
T Consensus 314 l~~dp~~Rps~~~i~~~L~~i~~~~~ 339 (342)
T 1b6c_B 314 WYANGAARLTALRIKKTLSQLSQQEG 339 (342)
T ss_dssp CCSSGGGSCCHHHHHHHHHHHHHTTC
T ss_pred hccChhhCCCHHHHHHHHHHHHHHhc
Confidence 45788888899998888766555544
No 2
>2xa6_A KH domain-containing\,RNA-binding\,signal transduction-associated protein 1; transcription, STAR proteins, CD44, cell cycle; NMR {Homo sapiens}
Probab=19.66 E-value=31 Score=21.67 Aligned_cols=15 Identities=20% Similarity=0.250 Sum_probs=13.3
Q ss_pred cCCCCCcccchhccc
Q 032710 78 LSLFPGSAEPLAFVA 92 (135)
Q Consensus 78 ~Sl~p~v~~~lalld 92 (135)
+|++|+.+|..++++
T Consensus 18 ~sLdPsf~Ha~RLl~ 32 (41)
T 2xa6_A 18 DSLDPSFTHAMQLLT 32 (41)
T ss_dssp HHSCTTCHHHHHHHH
T ss_pred hccCchHHHHHHHHH
Confidence 499999999999875
No 3
>1nb0_A Hypothetical protein FLJ11149; beta barrel, transferase; HET: ADP; 1.70A {Homo sapiens} SCOP: b.43.5.1 PDB: 1nb9_A* 1p4m_A* 1q9s_A*
Probab=18.46 E-value=50 Score=24.18 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=14.0
Q ss_pred ccHHHHHHhhhhhhhh
Q 032710 105 LTVEKLKTCLHIDLKR 120 (135)
Q Consensus 105 ~~iEEl~t~i~~d~~r 120 (135)
.|+|||++||..|.+.
T Consensus 109 ~sle~L~~qI~~D~~~ 124 (147)
T 1nb0_A 109 DSLESLISAIQGDIEE 124 (147)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 4799999999999764
No 4
>1n08_A Putative riboflavin kinase; phophoryl transferases, flavin cofactors, metal binding; HET: ADP; 1.60A {Schizosaccharomyces pombe} SCOP: b.43.5.1 PDB: 1n05_A* 1n07_A* 1n06_A*
Probab=16.93 E-value=57 Score=24.38 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=14.0
Q ss_pred ccHHHHHHhhhhhhhh
Q 032710 105 LTVEKLKTCLHIDLKR 120 (135)
Q Consensus 105 ~~iEEl~t~i~~d~~r 120 (135)
.|+|||++||..|.+.
T Consensus 127 ~sle~L~~qI~~D~~~ 142 (163)
T 1n08_A 127 AGLDKLIEDIHTDIRV 142 (163)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 5799999999999765
No 5
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=16.84 E-value=45 Score=21.25 Aligned_cols=11 Identities=36% Similarity=0.592 Sum_probs=9.1
Q ss_pred hccCcchhhHH
Q 032710 22 CSLSESEVDML 32 (135)
Q Consensus 22 csLSEsELDmL 32 (135)
+-||+.|||++
T Consensus 20 rpltDEeLD~~ 30 (47)
T 2fho_A 20 RPLSDEELDAM 30 (47)
T ss_dssp CCSCTTHHHHH
T ss_pred CCCCHHHHHHh
Confidence 34899999986
No 6
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=13.67 E-value=3.7e+02 Score=20.05 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=14.1
Q ss_pred ccCCCCccccHHHHHHhhh
Q 032710 97 LKCDNDDILTVEKLKTCLH 115 (135)
Q Consensus 97 Lk~~~~d~~~iEEl~t~i~ 115 (135)
+.-+|..-.|++|+...+.
T Consensus 275 l~~dP~~RPt~~ei~~~L~ 293 (303)
T 3hmm_A 275 WYANGAARLTALRIKKTLS 293 (303)
T ss_dssp CCSSGGGSCCHHHHHHHHH
T ss_pred cccCHhHCcCHHHHHHHHH
Confidence 5567888888888877653
No 7
>3bnw_A Riboflavin kinase, putative; APO structure, structural genomics, structural genomics of P protozoa consortium, SGPP, transferase; 2.40A {Trypanosoma brucei}
Probab=13.40 E-value=79 Score=24.08 Aligned_cols=16 Identities=13% Similarity=0.229 Sum_probs=14.0
Q ss_pred ccHHHHHHhhhhhhhh
Q 032710 105 LTVEKLKTCLHIDLKR 120 (135)
Q Consensus 105 ~~iEEl~t~i~~d~~r 120 (135)
.|+|||++||..|.+.
T Consensus 131 ~sle~L~~QI~~Di~~ 146 (181)
T 3bnw_A 131 HSLQALVDTIKSDVQF 146 (181)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 4899999999999764
No 8
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=13.32 E-value=2.6e+02 Score=17.26 Aligned_cols=55 Identities=13% Similarity=0.164 Sum_probs=37.9
Q ss_pred hhhhhccCcchhhHHHhHHHHHHHHHhhhCcHHHhhcCCh--HHHHHHHHHHHHHHHHHhhhc
Q 032710 18 VSWLCSLSESEVDMLISLKLLILQRAKVIGHEELANKFDL--KTLRALGFILMEHLKEKVKDL 78 (135)
Q Consensus 18 ~~WlcsLSEsELDmLIsLK~L~i~RAk~~Gh~~LA~kFDL--k~LRAlGlVLmE~LKervkd~ 78 (135)
..++..|++.+-.+++ ++...-...++.|+.++. .+.+..=--.+..||+.++..
T Consensus 32 ~~~l~~L~~~~r~vl~------l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~ 88 (92)
T 3hug_A 32 ADALAQLSAEHRAVIQ------RSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQEL 88 (92)
T ss_dssp HHHHHTSCHHHHHHHH------HHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHH------HHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567888888876543 445677788999997776 566655555667777776654
No 9
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=12.93 E-value=3.1e+02 Score=19.55 Aligned_cols=34 Identities=12% Similarity=0.194 Sum_probs=22.7
Q ss_pred hcccccccccCCCCccccHHHHHHhhhhhhhhhcch
Q 032710 89 AFVAGCNLLKCDNDDILTVEKLKTCLHIDLKRYGKA 124 (135)
Q Consensus 89 alld~CNLLk~~~~d~~~iEEl~t~i~~d~~r~~~~ 124 (135)
.|+..| |.-+|.+-.|++|+...+..=...|-+-
T Consensus 290 ~li~~c--l~~dP~~Rps~~e~l~~L~~ll~~~~~~ 323 (336)
T 3g2f_A 290 ETIEDC--WDQDAEARLTAQXAEERMAELMMIWERN 323 (336)
T ss_dssp HHHHHH--SCSSGGGSCCHHHHHHHHHHHHHCCCC-
T ss_pred HHHHHH--hcCChhhCcchHHHHHHHHHHHHHHHhc
Confidence 344444 6778888889999888776655555443
No 10
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=12.11 E-value=2.7e+02 Score=19.57 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHhh-----------hc-CC--CCCcc-cchhcccccccccCCCCccccHHHHHHhhhhhh
Q 032710 59 TLRALGFILMEHLKEKVK-----------DL-SL--FPGSA-EPLAFVAGCNLLKCDNDDILTVEKLKTCLHIDL 118 (135)
Q Consensus 59 ~LRAlGlVLmE~LKervk-----------d~-Sl--~p~v~-~~lalld~CNLLk~~~~d~~~iEEl~t~i~~d~ 118 (135)
-.-++|+++.|-+-++.- .. .. .+... ....|+..| |.-+|.+-.+++|+...+..-.
T Consensus 235 Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~--l~~~p~~Rps~~e~l~~l~~~~ 307 (337)
T 3ll6_A 235 DIWALGCILYLLCFRQHPFEDGAKLRIVNGKYSIPPHDTQYTVFHSLIRAM--LQVNPEERLSIAEVVHQLQEIA 307 (337)
T ss_dssp HHHHHHHHHHHHHHSSCCC------------CCCCTTCCSSGGGHHHHHHH--SCSSGGGSCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCCcchhHHHhhcCcccCCcccccchHHHHHHHHH--ccCChhhCcCHHHHHHHHHHHH
Confidence 467999999998754321 00 00 01111 112345444 7788999999999988775443
Done!