Query 032710
Match_columns 135
No_of_seqs 14 out of 16
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 07:35:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032710.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032710hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dn3b1 a.1.1.2 (B:2-146) Hemo 33.1 32 0.0023 22.1 4.6 48 20-78 73-120 (145)
2 d1bl0a1 a.4.1.8 (A:9-62) MarA 30.9 3.3 0.00024 23.1 -0.7 37 89-125 4-40 (54)
3 d1v4wb_ a.1.1.2 (B:) Hemoglobi 18.8 1.1E+02 0.0079 19.2 5.5 24 55-78 98-121 (146)
4 d1wi9a_ a.4.5.47 (A:) Hypothet 17.4 12 0.00088 24.1 -0.2 25 39-63 15-39 (72)
5 d1itha_ a.1.1.2 (A:) Hemoglobi 16.7 59 0.0043 20.8 3.3 33 44-76 88-120 (141)
6 d1cx4a1 b.82.3.2 (A:130-265) R 16.2 48 0.0035 20.0 2.6 20 15-34 18-37 (136)
7 d1vjya_ d.144.1.7 (A:) Type I 15.4 1.3E+02 0.0096 20.7 5.2 15 60-74 201-215 (303)
8 d1gcvb_ a.1.1.2 (B:) Hemoglobi 14.5 1.5E+02 0.011 18.8 5.3 41 31-78 71-111 (136)
9 d1xqua_ d.13.1.1 (A:) Putative 14.2 61 0.0044 19.8 2.7 31 18-48 47-77 (113)
10 d1e5da1 c.23.5.1 (A:251-402) R 13.8 56 0.0041 20.2 2.5 21 56-76 131-151 (152)
No 1
>d2dn3b1 a.1.1.2 (B:2-146) Hemoglobin, beta-chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.07 E-value=32 Score=22.10 Aligned_cols=48 Identities=21% Similarity=0.233 Sum_probs=33.8
Q ss_pred hhhccCcchhhHHHhHHHHHHHHHhhhCcHHHhhcCChHHHHHHHHHHHHHHHHHhhhc
Q 032710 20 WLCSLSESEVDMLISLKLLILQRAKVIGHEELANKFDLKTLRALGFILMEHLKEKVKDL 78 (135)
Q Consensus 20 WlcsLSEsELDmLIsLK~L~i~RAk~~Gh~~LA~kFDLk~LRAlGlVLmE~LKervkd~ 78 (135)
...+|.++| .++-.|+.| ||.. -.-+....+.+|-+|++++++.+.+.
T Consensus 73 ~V~~Ldd~~-~l~~~L~~l--------~~~h--~gv~~~~f~~~~~~ll~~l~~~lg~~ 120 (145)
T d2dn3b1 73 GLAHLDNLK-GTFATLSEL--------HCDK--LHVDPENFRLLGNVLVCVLAHHFGKE 120 (145)
T ss_dssp HHHTTTCHH-HHHHHHHHH--------HHTT--TCCCTHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHhccCHH-HHHHHHHHh--------cccc--cCCChhHHHHHHHHHHHHHHHHcCcc
Confidence 445666666 456666665 2222 24678899999999999999998754
No 2
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=30.90 E-value=3.3 Score=23.06 Aligned_cols=37 Identities=8% Similarity=0.007 Sum_probs=29.3
Q ss_pred hcccccccccCCCCccccHHHHHHhhhhhhhhhcchh
Q 032710 89 AFVAGCNLLKCDNDDILTVEKLKTCLHIDLKRYGKAA 125 (135)
Q Consensus 89 alld~CNLLk~~~~d~~~iEEl~t~i~~d~~r~~~~~ 125 (135)
++-..++.+..|..+.+++++|....|...+.+-+.-
T Consensus 4 ~i~~v~~yI~~~~~~~~tl~~lA~~~~~s~~~l~r~F 40 (54)
T d1bl0a1 4 TIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMF 40 (54)
T ss_dssp HHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 3445567788899999999999999999887765543
No 3
>d1v4wb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Bluefin tuna (Thunnus thynnus) [TaxId: 8237]}
Probab=18.79 E-value=1.1e+02 Score=19.24 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.0
Q ss_pred CChHHHHHHHHHHHHHHHHHhhhc
Q 032710 55 FDLKTLRALGFILMEHLKEKVKDL 78 (135)
Q Consensus 55 FDLk~LRAlGlVLmE~LKervkd~ 78 (135)
-+....+.+|-+|++++++.+.+.
T Consensus 98 V~~~~f~~~~~~ll~~l~~~lg~~ 121 (146)
T d1v4wb_ 98 VDPDNFRILGDCLTVVIAANLGDA 121 (146)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHHHHHHHcCcc
Confidence 577889999999999999998753
No 4
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.39 E-value=12 Score=24.12 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=20.8
Q ss_pred HHHHHhhhCcHHHhhcCChHHHHHH
Q 032710 39 ILQRAKVIGHEELANKFDLKTLRAL 63 (135)
Q Consensus 39 ~i~RAk~~Gh~~LA~kFDLk~LRAl 63 (135)
.|...|+.-.++||.+|++++=-++
T Consensus 15 ~Ik~~Kvv~LedLAa~F~lktqd~i 39 (72)
T d1wi9a_ 15 YIKKSKVVLLEDLAFQMGLRTQDAI 39 (72)
T ss_dssp HHHHCSEECHHHHHHHHCSCHHHHH
T ss_pred HHHHCCEeeHHHHHHHcCCcHHHHH
Confidence 3678899999999999999985444
No 5
>d1itha_ a.1.1.2 (A:) Hemoglobin {Innkeeper worm (Urechis caupo) [TaxId: 6431]}
Probab=16.75 E-value=59 Score=20.83 Aligned_cols=33 Identities=15% Similarity=-0.018 Sum_probs=26.8
Q ss_pred hhhCcHHHhhcCChHHHHHHHHHHHHHHHHHhh
Q 032710 44 KVIGHEELANKFDLKTLRALGFILMEHLKEKVK 76 (135)
Q Consensus 44 k~~Gh~~LA~kFDLk~LRAlGlVLmE~LKervk 76 (135)
+.+|..+.+..-+....+.+|-+|+++|++.+.
T Consensus 88 ~~lg~~H~~rgv~~~~F~~~~~~l~~~l~~~lg 120 (141)
T d1itha_ 88 KAKVPSHDAMGITPKHFGQLLKLVGGVFQEEFS 120 (141)
T ss_dssp HTTHHHHHTTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 345556666778899999999999999999764
No 6
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=16.17 E-value=48 Score=20.00 Aligned_cols=20 Identities=10% Similarity=0.308 Sum_probs=15.4
Q ss_pred hhhhhhhhccCcchhhHHHh
Q 032710 15 VEDVSWLCSLSESEVDMLIS 34 (135)
Q Consensus 15 ~eD~~WlcsLSEsELDmLIs 34 (135)
...+.||.+||+.+++-+++
T Consensus 18 l~~~~~F~~l~~~~~~~l~~ 37 (136)
T d1cx4a1 18 CKDILLFKNLDPEQMSQVLD 37 (136)
T ss_dssp HTTCGGGTTCCHHHHHHHHH
T ss_pred HhCCHhhhcCCHHHHHHHhc
Confidence 44567999999999887654
No 7
>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.37 E-value=1.3e+02 Score=20.65 Aligned_cols=15 Identities=20% Similarity=0.432 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHH
Q 032710 60 LRALGFILMEHLKEK 74 (135)
Q Consensus 60 LRAlGlVLmE~LKer 74 (135)
..|+|++|.|-+.++
T Consensus 201 i~S~Gvvl~el~tg~ 215 (303)
T d1vjya_ 201 IYAMGLVFWEIARRC 215 (303)
T ss_dssp HHHHHHHHHHHHHTB
T ss_pred hhhhHHHHHHHhhCC
Confidence 789999999988653
No 8
>d1gcvb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Houndshark (Mustelus griseus) [TaxId: 89020]}
Probab=14.51 E-value=1.5e+02 Score=18.78 Aligned_cols=41 Identities=20% Similarity=0.085 Sum_probs=31.2
Q ss_pred HHHhHHHHHHHHHhhhCcHHHhhcCChHHHHHHHHHHHHHHHHHhhhc
Q 032710 31 MLISLKLLILQRAKVIGHEELANKFDLKTLRALGFILMEHLKEKVKDL 78 (135)
Q Consensus 31 mLIsLK~L~i~RAk~~Gh~~LA~kFDLk~LRAlGlVLmE~LKervkd~ 78 (135)
+--.|+.|.-.+|...| =+......+|=+|++.|++.+.+.
T Consensus 71 l~~~l~~L~~~H~~~~~-------V~p~~f~~~g~~ll~~L~~~lg~~ 111 (136)
T d1gcvb_ 71 VKTLFKDLSKKHADDLH-------VDPGSFHLLTDCIIVELAYLRKDC 111 (136)
T ss_dssp HHHHTHHHHHHHHHTTC-------CCGGGHHHHHHHHHHHHHHHHGGG
T ss_pred chhHHHHHHHHhHhhcC-------CCcHHHHHHHHHHHHHHHHhCccc
Confidence 33567777777665444 467888999999999999998764
No 9
>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]}
Probab=14.18 E-value=61 Score=19.77 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=24.3
Q ss_pred hhhhhccCcchhhHHHhHHHHHHHHHhhhCc
Q 032710 18 VSWLCSLSESEVDMLISLKLLILQRAKVIGH 48 (135)
Q Consensus 18 ~~WlcsLSEsELDmLIsLK~L~i~RAk~~Gh 48 (135)
+.|+-.|+++|.+++..+-..+..+++..|.
T Consensus 47 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 77 (113)
T d1xqua_ 47 IANVKEINESNAQILIDIHKAANKVAEDLGI 77 (113)
T ss_dssp CSSGGGCCTTTTTHHHHHHHHHHHHHHHTTC
T ss_pred ccchhhccchhHHHHHHHHHHHHHHHHhhcc
Confidence 4577789999999888888888777776553
No 10
>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]}
Probab=13.78 E-value=56 Score=20.21 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=18.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhh
Q 032710 56 DLKTLRALGFILMEHLKEKVK 76 (135)
Q Consensus 56 DLk~LRAlGlVLmE~LKervk 76 (135)
|+..++.+|--+.+.||++++
T Consensus 131 ~~~~~~e~g~~i~~~lk~k~~ 151 (152)
T d1e5da1 131 DYEQLKTMAQTIARALKAKLA 151 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 568899999999999999875
Done!