Query 032714
Match_columns 135
No_of_seqs 102 out of 323
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 07:40:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032714.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032714hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e0o_A Peptide methionine sulf 95.3 0.0092 3.2E-07 45.5 2.7 82 12-101 40-121 (144)
2 3cxk_A Methionine-R-sulfoxide 93.9 0.027 9.2E-07 43.8 2.4 83 12-101 71-154 (164)
3 3mao_A Methionine-R-sulfoxide 93.8 0.034 1.2E-06 40.4 2.6 86 7-100 4-92 (105)
4 3hcg_A Peptide methionine sulf 93.5 0.052 1.8E-06 41.4 3.3 83 12-101 41-124 (146)
5 2kao_A Methionine-R-sulfoxide 93.2 0.045 1.5E-06 40.8 2.4 81 12-100 18-99 (124)
6 2kv1_A Methionine-R-sulfoxide 93.1 0.043 1.5E-06 40.9 2.2 81 12-100 18-99 (124)
7 2k8d_A Peptide methionine sulf 92.9 0.042 1.4E-06 42.2 2.0 83 12-101 59-141 (151)
8 3e0m_A Peptide methionine sulf 92.2 0.068 2.3E-06 45.1 2.5 83 12-101 207-290 (313)
9 3eqt_A ATP-dependent RNA helic 91.5 0.076 2.6E-06 40.4 1.9 94 8-107 7-107 (145)
10 2l1u_A MSRB2, methionine-R-sul 90.9 0.09 3.1E-06 40.0 1.7 82 12-101 35-124 (143)
11 3hcj_A MSRB, peptide methionin 90.8 0.049 1.7E-06 41.9 0.2 83 12-101 48-130 (154)
12 3ga3_A Interferon-induced heli 90.0 0.31 1.1E-05 36.5 4.0 79 9-93 7-87 (133)
13 2qfd_A Probable ATP-dependent 85.9 0.4 1.4E-05 36.4 2.4 68 12-93 25-104 (145)
14 3lrr_A Probable ATP-dependent 84.7 0.54 1.9E-05 34.5 2.6 76 11-92 2-81 (121)
15 4a2v_A RIG-I, retinoic acid in 83.0 0.8 2.7E-05 34.1 2.9 75 12-92 5-83 (131)
16 4gl2_A Interferon-induced heli 53.2 4 0.00014 34.9 0.9 71 8-83 580-653 (699)
17 1fv5_A First zinc finger of U- 34.6 5.2 0.00018 22.6 -0.9 23 9-31 3-25 (36)
18 2elm_A Zinc finger protein 406 32.6 10 0.00035 19.6 0.2 20 11-30 6-25 (37)
19 1srk_A Zinc finger protein ZFP 31.9 11 0.00037 18.9 0.2 20 11-30 4-23 (35)
20 2kvh_A Zinc finger and BTB dom 31.6 9.4 0.00032 18.0 -0.1 18 13-30 2-19 (27)
21 1x6m_A GFA, glutathione-depend 30.7 46 0.0016 25.0 3.6 20 67-86 95-114 (196)
22 2lvu_A Zinc finger and BTB dom 36.2 11 0.00037 17.6 0.0 19 13-31 1-19 (26)
23 2elx_A Zinc finger protein 406 28.3 12 0.00042 18.5 0.0 20 11-30 4-23 (35)
24 2elv_A Zinc finger protein 406 28.2 13 0.00046 18.7 0.1 20 11-30 6-25 (36)
25 2elq_A Zinc finger protein 406 27.5 13 0.00044 18.8 0.0 20 11-30 6-25 (36)
26 2m0e_A Zinc finger and BTB dom 27.2 15 0.00051 17.0 0.2 18 14-31 2-19 (29)
27 2eif_A IF-5A, protein (eukaryo 27.1 32 0.0011 24.9 2.1 30 36-65 39-68 (136)
28 2elp_A Zinc finger protein 406 27.0 19 0.00065 18.2 0.6 20 11-30 6-26 (37)
29 2kvf_A Zinc finger and BTB dom 26.5 12 0.0004 17.6 -0.3 18 13-30 2-19 (28)
30 1rik_A E6APC1 peptide; E6-bind 26.3 16 0.00056 17.1 0.3 17 14-30 2-18 (29)
31 2lvr_A Zinc finger and BTB dom 32.0 14 0.00049 17.4 0.0 19 13-31 2-20 (30)
32 2elt_A Zinc finger protein 406 26.0 15 0.0005 18.4 0.0 20 11-30 6-25 (36)
33 2els_A Zinc finger protein 406 25.9 15 0.00052 18.5 0.1 20 11-30 6-25 (36)
34 2m0d_A Zinc finger and BTB dom 25.7 13 0.00044 17.4 -0.2 18 13-30 2-19 (30)
35 2epc_A Zinc finger protein 32; 24.9 16 0.00056 19.0 0.1 21 11-31 8-28 (42)
36 1p7a_A BF3, BKLF, kruppel-like 24.7 13 0.00043 18.9 -0.4 20 11-30 8-27 (37)
37 2yu5_A Zinc finger protein 473 24.5 21 0.00072 18.9 0.6 21 11-31 9-29 (44)
38 1nyp_A Pinch protein; LIM doma 24.2 29 0.00098 20.8 1.2 13 14-26 31-43 (66)
39 1x61_A Thyroid receptor intera 23.8 39 0.0013 20.5 1.7 24 14-43 33-56 (72)
40 2ykg_A Probable ATP-dependent 23.6 36 0.0012 28.9 2.0 70 13-86 577-650 (696)
41 2elo_A Zinc finger protein 406 22.9 13 0.00043 18.9 -0.6 21 11-31 6-26 (37)
42 2en2_A B-cell lymphoma 6 prote 22.7 17 0.00059 19.0 -0.1 21 11-31 8-28 (42)
43 1njq_A Superman protein; zinc- 22.6 18 0.00061 18.7 -0.0 21 11-31 3-23 (39)
44 2lvt_A Zinc finger and BTB dom 28.2 18 0.00062 17.1 0.0 18 14-31 2-19 (29)
45 1klr_A Zinc finger Y-chromosom 22.4 15 0.0005 17.2 -0.4 18 14-31 2-19 (30)
46 2elr_A Zinc finger protein 406 22.3 15 0.00051 18.4 -0.4 21 11-31 6-26 (36)
47 2iyb_E Testin, TESS, TES; LIM 22.1 29 0.00099 21.0 0.9 25 13-43 31-55 (65)
48 1iz6_A Initiation factor 5A; S 21.4 52 0.0018 23.8 2.3 30 36-65 35-64 (138)
49 3fac_A Putative uncharacterize 21.3 53 0.0018 22.3 2.2 19 67-85 64-82 (118)
50 2kvg_A Zinc finger and BTB dom 21.3 12 0.00042 17.8 -0.8 17 13-29 2-18 (27)
51 2ept_A Zinc finger protein 32; 20.4 23 0.00079 18.4 0.1 21 11-31 7-27 (41)
52 2eoy_A Zinc finger protein 473 20.3 31 0.001 18.4 0.7 21 11-31 9-29 (46)
No 1
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=95.29 E-value=0.0092 Score=45.50 Aligned_cols=82 Identities=11% Similarity=0.155 Sum_probs=55.6
Q ss_pred CcEEeccCCCCccCCCCCeeceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeeeecCCceeeEEEEEeccc
Q 032714 12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVSSFQPF 91 (135)
Q Consensus 12 ~~~y~C~~C~tHLA~~~elISK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWKYe~A~E~s 91 (135)
+-+|.|+.|.++|=.+++ -|.-..|=.-.+..+-+ .+...+|.. -|+.. ..|.|..|+..||--.....+++
T Consensus 40 ~G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~pi~~-~v~~~~D~s--~gm~R-tEV~C~~Cg~HLGHVF~DGP~pt 111 (144)
T 3e0o_A 40 EGLYVDIVSGKPLFTSKD----KFDSQCGWPSFTKPIEE-EVEEKLDTS--HGMIR-TEVRSRTADSHLGHVFNDGPGPN 111 (144)
T ss_dssp SEEEEETTTCCEEEETTT----BCCCTTSSCEESCCSTT-TEEEEEECC--TTSCE-EEEEETTTCCEEEEEESCCSSTT
T ss_pred CEEEEeCCCCcccccCcc----cccCCCCCcccCchhcc-ceEEeecCC--CCceE-EEEEcCCCCCccCCccCCCCCCC
Confidence 358999999999977764 35444554333444433 222333432 35543 46999999999999887777788
Q ss_pred cccccccccc
Q 032714 92 FSCFCSENLS 101 (135)
Q Consensus 92 q~~~c~~~l~ 101 (135)
..|.|+|-+.
T Consensus 112 g~RyCiNS~s 121 (144)
T 3e0o_A 112 GLRYCINSAA 121 (144)
T ss_dssp CCEEEECGGG
T ss_pred CCEeeeceee
Confidence 8899998543
No 2
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=93.91 E-value=0.027 Score=43.76 Aligned_cols=83 Identities=16% Similarity=0.356 Sum_probs=54.0
Q ss_pred CcEEeccCCCCccCCCCCeeceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeeeecCCceeeEEEEEe-cc
Q 032714 12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVSSF-QP 90 (135)
Q Consensus 12 ~~~y~C~~C~tHLA~~~elISK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWKYe~A~-E~ 90 (135)
+-+|.|+.|.++|=.+++ -|.-..|=.-.+..+-+-.+...+|.. -|+. -..|.|..|+..||=-+.... .+
T Consensus 71 ~GiY~C~~Cg~pLF~S~~----KFdSGcGWPSF~~pi~~~~V~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~DGP~~p 143 (164)
T 3cxk_A 71 AGIYHCVVCGTALFESGA----KYHSGCGWPSYFKPIDGEVIDEKMDYT--HGMT-RVEVRCNQCGAHLGHVFEDGPRDK 143 (164)
T ss_dssp SEEEEETTTCCEEEEGGG----BCCCCSSSCEESSCSSTTSEEEEEECG--GGCC-EEEEEETTTCCEEEEEESCSCTTT
T ss_pred CeEEEccCCCccccCCch----hccCCCCCcccCcccCCCceEEeECCC--CCcE-EEEEEeCCCCCccCcccCCCCCCC
Confidence 358999999999977764 354445544444433221222233332 2553 456999999999999877655 56
Q ss_pred ccccccccccc
Q 032714 91 FFSCFCSENLS 101 (135)
Q Consensus 91 sq~~~c~~~l~ 101 (135)
+-.|.|+|-+.
T Consensus 144 tg~RyCINS~s 154 (164)
T 3cxk_A 144 TGLRYCINSAA 154 (164)
T ss_dssp TSCEEEECGGG
T ss_pred CCCEEeeceee
Confidence 77899998643
No 3
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=93.83 E-value=0.034 Score=40.35 Aligned_cols=86 Identities=16% Similarity=0.199 Sum_probs=53.3
Q ss_pred eccCC--CcEEeccCCCCccCCCCCeeceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeeeecCCceeeEE
Q 032714 7 VELKG--RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKY 84 (135)
Q Consensus 7 ~yL~g--~~~y~C~~C~tHLA~~~elISK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWKY 84 (135)
.|.+. +-+|.|+.|.++|=.+++ -|....|=.-.+..+-.-.+...++. .++ .-..|.|..|+..||--+
T Consensus 4 ~y~~~~~~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~---~~~-~RtEV~C~~C~~HLGHVF 75 (105)
T 3mao_A 4 VFQNHFEPGVYVCAKCGYELFSSRS----KYAHSSPWPAFTETIHADSVAKRPEH---NRS-EALKVSCGKCGNGLGHEF 75 (105)
T ss_dssp CCTTCCCSEEEEETTTCCEEEEGGG----EECCSSSSCEESCCSSTTSEEEEECT---TST-TEEEEEETTTCCEEEEEE
T ss_pred cccCCCCCEEEEcCCCCCccccCCc----ccCCCCCChhhccccCCCceEEEecC---CCC-CEEEEEeCCCCCccCccc
Confidence 34443 458999999999877764 35544554433443321111111121 122 236899999999999877
Q ss_pred -EEEecccccccccccc
Q 032714 85 -VSSFQPFFSCFCSENL 100 (135)
Q Consensus 85 -e~A~E~sq~~~c~~~l 100 (135)
.....++-.|.|+|-+
T Consensus 76 ~~DGP~ptg~RyCiNS~ 92 (105)
T 3mao_A 76 LNDGPKPGQSRFSIFSS 92 (105)
T ss_dssp TTCSSSTTCCEEEECGG
T ss_pred CCCCcCCCCCEEeeCee
Confidence 4556678889999854
No 4
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=93.53 E-value=0.052 Score=41.40 Aligned_cols=83 Identities=8% Similarity=0.075 Sum_probs=52.6
Q ss_pred CcEEeccCCCCccCCCCCeeceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeeeecCCceeeEEEEEec-c
Q 032714 12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVSSFQ-P 90 (135)
Q Consensus 12 ~~~y~C~~C~tHLA~~~elISK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWKYe~A~E-~ 90 (135)
+-+|.|+.|.++|=.+++ -|.-..|=.-.+..+-.-.+...+|+. -|+.. ..|.|..|+..||=-...... +
T Consensus 41 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~s--~gm~R-tEV~C~~Cg~HLGHVF~DGP~~~ 113 (146)
T 3hcg_A 41 PGIYVDVVSGEPLFSSAD----KYDSGCGWPSFTRPIDAKSVTEHDDFS--YNMRR-TEVRSHAADSHLGHVFPDGPRDK 113 (146)
T ss_dssp SEEEEETTTCCEEEEGGG----EECCSSSSCEESSCSSGGGEEEEEEEE--TTEEE-EEEEETTTCCEEEEEESCSCGGG
T ss_pred CEEEEecCCCcccccCcc----cccCCCCChhhccccCCCceEEeecCC--CCcEE-EEEEeCCCCCccCceeCCCCCCC
Confidence 458999999999877763 455555544444433211111223332 24443 478999999999987765544 3
Q ss_pred ccccccccccc
Q 032714 91 FFSCFCSENLS 101 (135)
Q Consensus 91 sq~~~c~~~l~ 101 (135)
+-.|.|+|-+.
T Consensus 114 tg~RyCiNS~s 124 (146)
T 3hcg_A 114 GGLRYCINGAS 124 (146)
T ss_dssp TSCEEEECGGG
T ss_pred CCCEEeeeeEE
Confidence 67799998543
No 5
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=93.20 E-value=0.045 Score=40.80 Aligned_cols=81 Identities=16% Similarity=0.202 Sum_probs=49.9
Q ss_pred CcEEeccCCCCccCCCCCeeceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeeeecCCceeeEE-EEEecc
Q 032714 12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKY-VSSFQP 90 (135)
Q Consensus 12 ~~~y~C~~C~tHLA~~~elISK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWKY-e~A~E~ 90 (135)
+-+|.|+.|.++|=.+++ -|.-..|=.-.+..+..-.+...+|.. ++ .-..|.|..|+..||=-+ .....+
T Consensus 18 ~GiY~C~~Cg~pLF~S~~----KFdSG~GWPSF~~pi~~~~v~~~~D~~---~~-~RtEV~C~~Cg~HLGHVF~~DGP~p 89 (124)
T 2kao_A 18 PGVYVCAKCSYELFSSHS----KYAHSSPWPAFTETIHPDSVTKCPEKN---RP-EALKVSCGKCGNGLGHEFLNDGPKR 89 (124)
T ss_dssp CCEEEESSSCCCCCCTTT----SCCCCCSSCCBSCCCCCSSCEEEECSS---CT-TCEEEECTTTTCCCEEECCSSCSSS
T ss_pred CEEEEeCCCCCccccCcc----cccCCCCChhhCccCCccceEEEecCC---CC-CEEEEEeCCCCCcCCccCCCCCcCC
Confidence 469999999999988775 243334433333332111111111211 11 236899999999999877 355667
Q ss_pred cccccccccc
Q 032714 91 FFSCFCSENL 100 (135)
Q Consensus 91 sq~~~c~~~l 100 (135)
+-.|.|+|-+
T Consensus 90 tg~RyCINS~ 99 (124)
T 2kao_A 90 GQSRFCIFSS 99 (124)
T ss_dssp SCCCEECCSS
T ss_pred CCCEeeeCeE
Confidence 8889999854
No 6
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=93.11 E-value=0.043 Score=40.91 Aligned_cols=81 Identities=16% Similarity=0.213 Sum_probs=50.6
Q ss_pred CcEEeccCCCCccCCCCCeeceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeeeecCCceeeEE-EEEecc
Q 032714 12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKY-VSSFQP 90 (135)
Q Consensus 12 ~~~y~C~~C~tHLA~~~elISK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWKY-e~A~E~ 90 (135)
+-+|.|+.|.++|=.+++= |....|=.-.+..+-.-.+-..+++ .|+. ...|.|+.|+..||=-. ..-..+
T Consensus 18 ~G~Y~C~~Cg~pLF~S~~K----fdSg~GWPSF~~~i~~~~v~~~~d~---~~~~-r~Ev~C~~Cg~HLGHVF~~DGP~p 89 (124)
T 2kv1_A 18 PGVYVCAKCSYELFSSHSK----YAHSSPWPAFTETIHPDSVTKCPEK---NRPE-ALKVSCGKCGNGLGHEFLNDGPKR 89 (124)
T ss_dssp CEEEEETTTCCBCCCTTSC----CCCCSSSCCBSCCCCCSSCEEEECS---SSTT-CEEEECTTTTCCCEEECTTSCTTT
T ss_pred CEEEEecCCCCcccccCCc----ccCCCCCceeecccccceEEEEecc---CCce-EEEEEEecCCCccCCccCCCCCCC
Confidence 3599999999999887753 4444443222332211111112222 2222 35799999999999876 456677
Q ss_pred cccccccccc
Q 032714 91 FFSCFCSENL 100 (135)
Q Consensus 91 sq~~~c~~~l 100 (135)
+-.|.|+|-+
T Consensus 90 tg~RyCINS~ 99 (124)
T 2kv1_A 90 GQSRFCIFSS 99 (124)
T ss_dssp TCSCEECCTT
T ss_pred CCCEEeecce
Confidence 8889999854
No 7
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=92.91 E-value=0.042 Score=42.17 Aligned_cols=83 Identities=19% Similarity=0.451 Sum_probs=54.2
Q ss_pred CcEEeccCCCCccCCCCCeeceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeeeecCCceeeEEEEEeccc
Q 032714 12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVSSFQPF 91 (135)
Q Consensus 12 ~~~y~C~~C~tHLA~~~elISK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWKYe~A~E~s 91 (135)
+-+|.|+.|.++|=.+++ -|.-..|=.-.+..+-.-.+...+|.. -|+.. ..|.|..|+..||--+.....++
T Consensus 59 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~V~~~~D~s--~gm~R-tEV~C~~Cg~HLGHVF~DGP~pt 131 (151)
T 2k8d_A 59 DGIYRCICCGTDLFDSET----KFDSGTGWPSFYDVVSEHNIKLREDRS--LGMVR-CEVLCARCDAHLGHVFDDGPRPT 131 (151)
T ss_dssp CSEEEETTTTEEEEEGGG----SCCSTTCCSEESCCSCTTSEECCCCBT--TSSCE-EEEEETTEEEEEEEEEECSSSSS
T ss_pred CEEEEecCCCCcccCCcc----cccCCCCCcccCcccCCCceEEeeCCC--CCceE-EEEEeCCCCCcCCcccCCCCCCC
Confidence 358999999999877764 355455543334443221122223332 24443 46999999999999887766677
Q ss_pred cccccccccc
Q 032714 92 FSCFCSENLS 101 (135)
Q Consensus 92 q~~~c~~~l~ 101 (135)
-.|.|+|-+.
T Consensus 132 g~RyCINS~s 141 (151)
T 2k8d_A 132 GKRYCMNSAA 141 (151)
T ss_dssp CEEEEECSTT
T ss_pred CCEEeeceee
Confidence 7899998643
No 8
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=92.20 E-value=0.068 Score=45.08 Aligned_cols=83 Identities=12% Similarity=0.095 Sum_probs=53.4
Q ss_pred CcEEeccCCCCccCCCCCeeceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeeeecCCceeeEEEEEe-cc
Q 032714 12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVSSF-QP 90 (135)
Q Consensus 12 ~~~y~C~~C~tHLA~~~elISK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWKYe~A~-E~ 90 (135)
+-+|.|+.|.++|=.+++ -|....|=--.+..+-.-.+...+|+. -|+.. ..|.|..|+..||=-..... ++
T Consensus 207 ~G~Y~c~~cg~pLF~S~~----KfdSg~GWPSF~~~i~~~~v~~~~D~s--~gm~R-tEv~c~~c~~HLGHVF~DGp~~p 279 (313)
T 3e0m_A 207 EGIYVDITTGEPLFFAKD----KFASGCGWPSFSRPLSKELIHYYKDLS--HGMER-IEVRSRSGSAHLGHVFTDGPREL 279 (313)
T ss_dssp SEEEEETTTCCEEEEGGG----BCCCCSSSCEESSCSSGGGEEEEEECC--TTCCE-EEEEESSSCCEEEEEESCSCTTT
T ss_pred CeEEEecCCCccccCCCc----cccCCCCCcccCcccCCCceEEeecCC--CCcEE-EEEECCCCCCccCcccCCCCCCC
Confidence 458999999999877653 355444543333333111111123332 25543 47999999999998877665 67
Q ss_pred ccccccccccc
Q 032714 91 FFSCFCSENLS 101 (135)
Q Consensus 91 sq~~~c~~~l~ 101 (135)
+..|.|+|-+.
T Consensus 280 tg~RyCiNs~s 290 (313)
T 3e0m_A 280 GGLRYCINSAS 290 (313)
T ss_dssp TSCEEEECGGG
T ss_pred CCCEEeeceee
Confidence 88899998543
No 9
>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A
Probab=91.50 E-value=0.076 Score=40.36 Aligned_cols=94 Identities=14% Similarity=0.144 Sum_probs=52.0
Q ss_pred ccCCCcEEeccCCCCccCCCCCeece--eeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeeeecCCceeeEEE
Q 032714 8 ELKGRSYYKCRFCNSHLALADSVLSW--SFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYV 85 (135)
Q Consensus 8 yL~g~~~y~C~~C~tHLA~~~elISK--~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWKYe 85 (135)
+.++.-.+.|++|.+.++..+||-.- +-+=--+++ |...+.+..+|..--....+...-..|.|..|++.+|- .
T Consensus 7 ~~~s~vkllCrkC~~~~C~g~DIr~ie~~HhVnv~p~--F~~~y~~~~~~~~~~k~f~d~~~~g~I~C~~Cgq~WG~--~ 82 (145)
T 3eqt_A 7 FPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPN--FSNYYNVSRDPVVINKVFKDWKPGGVISCRNCGEVWGL--Q 82 (145)
T ss_dssp CCGGGCEEEETTTCCEEEEGGGEEEETTTEEEECCGG--GGGGEEEEEEECCCSSCCSSEEEEEEEEETTTCCEEEE--E
T ss_pred CCchheEEECCCCCeeEEeccceEEeccceEEeeChh--heeeEEeccCCCCCCcccccccCCcEEEchhhChhhHh--h
Confidence 34445679999999999999997432 111001111 11223332222211111355577888999999998665 4
Q ss_pred EEeccccc-----cccccccccccccc
Q 032714 86 SSFQPFFS-----CFCSENLSNISGAA 107 (135)
Q Consensus 86 ~A~E~sq~-----~~c~~~l~~~~~~~ 107 (135)
--|-..++ +.+. |++.+|.-
T Consensus 83 m~yk~~~LP~LkIksFV--ve~~~g~~ 107 (145)
T 3eqt_A 83 MIYKSVKLPVLKVRSML--LETPQGRI 107 (145)
T ss_dssp EEETTEEEEEECGGGEE--EEETTEEE
T ss_pred EEeccccCceEeEEEEE--EEcCCCcE
Confidence 45555443 4444 35555543
No 10
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=90.87 E-value=0.09 Score=39.96 Aligned_cols=82 Identities=18% Similarity=0.375 Sum_probs=51.4
Q ss_pred CcEEeccCCCCccCCCCCeeceeeecCCCeEEEeeccccC--------CCCcccceeeccccEEEeeeeeeecCCceeeE
Q 032714 12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNI--------MLGPQEERLMLSGMHTVEDIFCCCCGQIVGWK 83 (135)
Q Consensus 12 ~~~y~C~~C~tHLA~~~elISK~F~G~~GrAyLf~~vvNv--------~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWK 83 (135)
+-+|.|+.|.++|=.+++ -|.-..|=.- |.+.+++ .+...+|. .-|+.. ..|.|..|+..||=-
T Consensus 35 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPS-F~~pi~~~~~~~~~~~V~~~~D~--s~gm~R-tEV~C~~Cg~HLGHV 106 (143)
T 2l1u_A 35 TGMYHCVCCDSPLFSSEK----KYCSGTGWPS-FSEAYGSKGSDESHTGILRRLDT--SLGCPR-MEVVCKQCEAHLGHV 106 (143)
T ss_dssp CEEEEESSSSCEEEEGGG----BCTTTTCCSB-BSSCCSCCTTHHHHTCEEEEEEC--TTSSCE-EEEEESSSCCCCEEE
T ss_pred CeEEEeCCCCCeeecCcc----cccCCCCChh-hchhhccccccCCCCceEEeecc--cCCceE-EEEEECCCCCcCCcc
Confidence 358999999999877765 3443334322 2222321 11112222 224443 469999999999998
Q ss_pred EEEEeccccccccccccc
Q 032714 84 YVSSFQPFFSCFCSENLS 101 (135)
Q Consensus 84 Ye~A~E~sq~~~c~~~l~ 101 (135)
+.....++-.|.|+|-+.
T Consensus 107 F~DGP~ptg~RyCINS~s 124 (143)
T 2l1u_A 107 FPDGPKPTGQRFCINSVA 124 (143)
T ss_dssp ECCSSCGGGCEEEECCTT
T ss_pred cCCCCCCCCCEEEeeeeE
Confidence 877666777899998653
No 11
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=90.79 E-value=0.049 Score=41.92 Aligned_cols=83 Identities=20% Similarity=0.415 Sum_probs=51.2
Q ss_pred CcEEeccCCCCccCCCCCeeceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeeeecCCceeeEEEEEeccc
Q 032714 12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVSSFQPF 91 (135)
Q Consensus 12 ~~~y~C~~C~tHLA~~~elISK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWKYe~A~E~s 91 (135)
+-+|.|+.|.++|=.+++ -|....|=--.+..+-.-.+...+|.. -|+.. ..|.|..|+..||--......++
T Consensus 48 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~s--~gm~R-tEV~C~~Cg~HLGHVF~DGP~pt 120 (154)
T 3hcj_A 48 DGVYTCRLCGLPLFRSNA----KFDSGTGWPSFFAPYDPAHVREIRDTS--YGMIR-TEIVCARCDSHLGHVFPDGPPPT 120 (154)
T ss_dssp SEEEEETTTCCEEEEECT----TCCCCTTSSTTEEESCGGGEEEECCTT--TTTSC-EEEEETTTCCEEEEEESCSCTTT
T ss_pred CEEEEccCCCCccccCcc----cccCCCCCcccccccCccceEEeecCC--CCceE-EEEEeCCCCCccCCccCCCCCCC
Confidence 358999999999977764 243333432222222111111112221 24432 47899999999998887777778
Q ss_pred cccccccccc
Q 032714 92 FSCFCSENLS 101 (135)
Q Consensus 92 q~~~c~~~l~ 101 (135)
-.|.|+|-+.
T Consensus 121 g~RyCiNS~s 130 (154)
T 3hcj_A 121 GERHCLNSVS 130 (154)
T ss_dssp TCEEEECGGG
T ss_pred CCEeeeceee
Confidence 8899998543
No 12
>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A
Probab=89.99 E-value=0.31 Score=36.49 Aligned_cols=79 Identities=10% Similarity=0.172 Sum_probs=47.1
Q ss_pred cCCCcEEeccCCCCccCCCCCeec--eeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeeeecCCceeeEEEE
Q 032714 9 LKGRSYYKCRFCNSHLALADSVLS--WSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVS 86 (135)
Q Consensus 9 L~g~~~y~C~~C~tHLA~~~elIS--K~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWKYe~ 86 (135)
.++.=.+.|++|.+.++..+||-. .+-+=--+++| ...+.+..-+...+. ..+..+-..|.|. |++.+|- +-
T Consensus 7 ~~s~vkllCrkC~~~~C~g~DIR~ie~~HhVnv~p~F--~~~y~~~~~~~~~k~-f~d~~~~g~I~C~-Cgq~WG~--~m 80 (133)
T 3ga3_A 7 NPSLITFLCKNCSVLACSGEDIHVIEKMHHVNMTPEF--KELYIVRENKALQKK-CADYQINGEIICK-CGQAWGT--MM 80 (133)
T ss_dssp CGGGEEEEETTTCCEEEEGGGCEEETTTEEECCCTGG--GGSEEEECCTTTCEE-CSSCEEEEEEEET-TSCEEEE--EE
T ss_pred CcceEEEEccCCCeeEEeccceEEeccceEEeeChhh--eeeEEecCCCCccch-hccccCCceEEEe-cCChhhh--hE
Confidence 344446999999999999999732 22221111221 233434322223333 4667888999999 9998665 44
Q ss_pred Eeccccc
Q 032714 87 SFQPFFS 93 (135)
Q Consensus 87 A~E~sq~ 93 (135)
-|-..++
T Consensus 81 ~yk~~~L 87 (133)
T 3ga3_A 81 VHKGLDL 87 (133)
T ss_dssp EETTEEE
T ss_pred EeccccC
Confidence 4555443
No 13
>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative splicing, antiviral defense, ATP- binding, hydrolase, immune response; 2.70A {Homo sapiens} PDB: 2qfb_A
Probab=85.95 E-value=0.4 Score=36.36 Aligned_cols=68 Identities=21% Similarity=0.385 Sum_probs=44.1
Q ss_pred CcEEeccCCCCccCCCCCe----------eceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeee--ecCCc
Q 032714 12 RSYYKCRFCNSHLALADSV----------LSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC--CCGQI 79 (135)
Q Consensus 12 ~~~y~C~~C~tHLA~~~el----------ISK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~--~C~t~ 79 (135)
.-.+.|++|.+.+++.+|| +.+.|. ..+.+..-+. .+. .-+..+-..|+|. .|++.
T Consensus 25 ~v~llCrkC~~~~C~g~DIrvie~~HhV~v~p~F~----------~~y~v~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~ 92 (145)
T 2qfd_A 25 NKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK----------ECFVSRPHPK-PKQ-FSSFEKRAKIFCARQNCSHD 92 (145)
T ss_dssp CCEEEETTTCCEEEEGGGEEEETTTEEEECSTTGG----------GTEEEEECSS-CCC-CSSEEEEEEEEECSTTTCCE
T ss_pred ceEEEccCCCeeEEcccceeEecCCcEEecCcCce----------eeEEEcCCcc-cch-hhceeCCceEEeCCcccCcc
Confidence 3469999999999999998 444543 2222321111 111 4455788899999 99997
Q ss_pred eeeEEEEEeccccc
Q 032714 80 VGWKYVSSFQPFFS 93 (135)
Q Consensus 80 LGWKYe~A~E~sq~ 93 (135)
+|- +--|-..++
T Consensus 93 WG~--~m~yk~~~l 104 (145)
T 2qfd_A 93 WGI--HVKYKTFEI 104 (145)
T ss_dssp EEE--EEEETTEEE
T ss_pred hhc--eEEEccccC
Confidence 776 455555553
No 14
>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral RNA, RIG-I like receptors, antiviral ATP-binding, helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB: 3lrn_A* 3og8_A 2rmj_A 3ncu_A*
Probab=84.74 E-value=0.54 Score=34.52 Aligned_cols=76 Identities=20% Similarity=0.330 Sum_probs=45.0
Q ss_pred CCcEEeccCCCCccCCCCCee--ceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeee--ecCCceeeEEEE
Q 032714 11 GRSYYKCRFCNSHLALADSVL--SWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC--CCGQIVGWKYVS 86 (135)
Q Consensus 11 g~~~y~C~~C~tHLA~~~elI--SK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~--~C~t~LGWKYe~ 86 (135)
+...+.|++|.+.++..+||- .++-+=--+++| ...+.+.+.+. .+. .-+.++-..|.|. .|++.+|- .-
T Consensus 2 ~~~~llC~kC~~~~C~g~DIr~ie~~HhVnv~p~F--~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~--~m 75 (121)
T 3lrr_A 2 ENKKLLCRKCKALACYTADVRVIEESHYTVLGDAF--KECFVSRPHPK-PKQ-FSSFEKRAKIFCARQNCSHDWGI--HV 75 (121)
T ss_dssp CCEEEEETTTCCEEEEGGGEEEETTTEEEECSHHH--HTTEEEEECSS-CCE-ETTEEEEEEEEECSTTTCCEEEE--EE
T ss_pred CCEEEECCCCCeEEEeccceEEeecceEEeeChhh--eeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhh--eE
Confidence 346789999999999999973 222111111111 12233322222 222 3466788899999 99998665 44
Q ss_pred Eecccc
Q 032714 87 SFQPFF 92 (135)
Q Consensus 87 A~E~sq 92 (135)
-|-..+
T Consensus 76 ~yk~~~ 81 (121)
T 3lrr_A 76 KYKTFE 81 (121)
T ss_dssp EETTEE
T ss_pred Eecccc
Confidence 455544
No 15
>4a2v_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 1.44A {Anas platyrhynchos} PDB: 4a2x_A
Probab=83.01 E-value=0.8 Score=34.11 Aligned_cols=75 Identities=15% Similarity=0.268 Sum_probs=43.7
Q ss_pred CcEEeccCCCCccCCCCCee--ceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeee--ecCCceeeEEEEE
Q 032714 12 RSYYKCRFCNSHLALADSVL--SWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC--CCGQIVGWKYVSS 87 (135)
Q Consensus 12 ~~~y~C~~C~tHLA~~~elI--SK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~--~C~t~LGWKYe~A 87 (135)
...+.|++|.+.++..+||- .++-+=--+++| ...+.+.+.+. .+. .-+.++-..|.|. +|++.+|- +--
T Consensus 5 ~~kllCrkC~~~vC~g~DIr~ie~~HhVnv~p~F--~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~--~m~ 78 (131)
T 4a2v_A 5 QKNLLCGKCKAYACSTDDIRIIKDSHHIVLGEAF--KERYTTKPHKK-PMQ-FDGFEKKSKMYCRNNNCQHDWGI--TVK 78 (131)
T ss_dssp CCEEEETTTCCEEEEGGGEEEETTTEEEECSSGG--GGGEEEEECCC-CCC-TTSEEEEEEEEESCTTTCCEEEE--EEE
T ss_pred ceEEEccCCCeeEEeccceEEeecceEEeeChhh--eeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhh--hEe
Confidence 46789999999999999973 222111111111 12222222221 222 3456788899999 99998665 444
Q ss_pred ecccc
Q 032714 88 FQPFF 92 (135)
Q Consensus 88 ~E~sq 92 (135)
|-..+
T Consensus 79 yk~~~ 83 (131)
T 4a2v_A 79 YLTFD 83 (131)
T ss_dssp ETTEE
T ss_pred ecCcc
Confidence 55544
No 16
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=53.21 E-value=4 Score=34.85 Aligned_cols=71 Identities=13% Similarity=0.241 Sum_probs=33.9
Q ss_pred ccCCCcEEeccCCCCccCCCCCeec--eeeecCCCeEEEeeccccCCCCcc-cceeeccccEEEeeeeeeecCCceeeE
Q 032714 8 ELKGRSYYKCRFCNSHLALADSVLS--WSFNCRRGRAYLFSDVVNIMLGPQ-EERLMLSGMHTVEDIFCCCCGQIVGWK 83 (135)
Q Consensus 8 yL~g~~~y~C~~C~tHLA~~~elIS--K~F~G~~GrAyLf~~vvNv~~G~~-e~R~m~TG~HtV~DI~C~~C~t~LGWK 83 (135)
|.+......|.+|...++..+||-. .+-+=.-.++ |...+.+. .+. ..+ ..-+......|+|. |++.+|-.
T Consensus 580 ~~~~~~~~~c~~c~~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~-~~~~~~~~~~~~c~-~~~~~g~~ 653 (699)
T 4gl2_A 580 NNPSLITFLCKNCSVLACSGEDIHVIEKMHHVNMTPE--FKELYIVR-ENKTLQK-KCADYQINGEIICK-CGQAWGTM 653 (699)
T ss_dssp --CCSEEEEESSSCCEEEEGGGCEEETTTEEECCCHH--HHHHCEEC-----------------CEEECS-SSCEEEEE
T ss_pred cCcceeEEECCCCCcEEEehhheeeeccCceEeeCcc--hhhheeec-CCCccch-hhhccccCCcEEee-cCchhhHH
Confidence 4555456789999999999999732 2111000111 12233232 222 122 24566778889999 99987764
No 17
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=34.56 E-value=5.2 Score=22.58 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=17.8
Q ss_pred cCCCcEEeccCCCCccCCCCCee
Q 032714 9 LKGRSYYKCRFCNSHLALADSVL 31 (135)
Q Consensus 9 L~g~~~y~C~~C~tHLA~~~elI 31 (135)
+.+++.|.|..|..-.+..+.|+
T Consensus 3 ~~gekp~~C~~CgK~F~~~s~L~ 25 (36)
T 1fv5_A 3 LLKPARFMCLPCGIAFSSPSTLE 25 (36)
T ss_dssp SSSCCCCEETTTTEECSCHHHHH
T ss_pred CCCccCeECCCCCCccCCHhHcc
Confidence 45678999999998777766654
No 18
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.64 E-value=10 Score=19.65 Aligned_cols=20 Identities=15% Similarity=0.396 Sum_probs=14.2
Q ss_pred CCcEEeccCCCCccCCCCCe
Q 032714 11 GRSYYKCRFCNSHLALADSV 30 (135)
Q Consensus 11 g~~~y~C~~C~tHLA~~~el 30 (135)
+++.|.|..|..-.+..+.|
T Consensus 6 ~~k~~~C~~C~k~f~~~~~L 25 (37)
T 2elm_A 6 SGHLYYCSQCHYSSITKNCL 25 (37)
T ss_dssp SSCEEECSSSSCEEECHHHH
T ss_pred CCcCeECCCCCcccCCHHHH
Confidence 46789999998766554443
No 19
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=31.86 E-value=11 Score=18.92 Aligned_cols=20 Identities=25% Similarity=0.634 Sum_probs=14.9
Q ss_pred CCcEEeccCCCCccCCCCCe
Q 032714 11 GRSYYKCRFCNSHLALADSV 30 (135)
Q Consensus 11 g~~~y~C~~C~tHLA~~~el 30 (135)
+.+.|.|..|..-+...+.|
T Consensus 4 ~~k~~~C~~C~k~f~~~~~l 23 (35)
T 1srk_A 4 GKRPFVCRICLSAFTTKANC 23 (35)
T ss_dssp CCSCEECSSSCCEESSHHHH
T ss_pred CCcCeeCCCCCcccCCHHHH
Confidence 45789999998877665554
No 20
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=31.59 E-value=9.4 Score=18.01 Aligned_cols=18 Identities=11% Similarity=0.392 Sum_probs=12.9
Q ss_pred cEEeccCCCCccCCCCCe
Q 032714 13 SYYKCRFCNSHLALADSV 30 (135)
Q Consensus 13 ~~y~C~~C~tHLA~~~el 30 (135)
+.|.|..|..-....+.|
T Consensus 2 k~~~C~~C~k~f~~~~~l 19 (27)
T 2kvh_A 2 KPFSCSLCPQRSRDFSAM 19 (27)
T ss_dssp CCEECSSSSCEESSHHHH
T ss_pred cCccCCCcChhhCCHHHH
Confidence 569999998776655443
No 21
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=30.69 E-value=46 Score=25.03 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=15.7
Q ss_pred EEeeeeeeecCCceeeEEEE
Q 032714 67 TVEDIFCCCCGQIVGWKYVS 86 (135)
Q Consensus 67 tV~DI~C~~C~t~LGWKYe~ 86 (135)
.+.--||..|++.|-|..+.
T Consensus 95 ~~~r~FC~~CGs~l~~~~~~ 114 (196)
T 1x6m_A 95 PIQRHRCRDCGVHMYGRIEN 114 (196)
T ss_dssp SEEEEEETTTCCEEEEEECC
T ss_pred CeeeEECCCCCCcCCccccc
Confidence 35667999999999887654
No 22
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=36.17 E-value=11 Score=17.58 Aligned_cols=19 Identities=16% Similarity=0.480 Sum_probs=13.4
Q ss_pred cEEeccCCCCccCCCCCee
Q 032714 13 SYYKCRFCNSHLALADSVL 31 (135)
Q Consensus 13 ~~y~C~~C~tHLA~~~elI 31 (135)
+.|.|..|..-....+.|.
T Consensus 1 kp~~C~~C~k~f~~~~~l~ 19 (26)
T 2lvu_A 1 KPYVCERCGKRFVQSSQLA 19 (26)
Confidence 3588999987776666553
No 23
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.31 E-value=12 Score=18.51 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=14.6
Q ss_pred CCcEEeccCCCCccCCCCCe
Q 032714 11 GRSYYKCRFCNSHLALADSV 30 (135)
Q Consensus 11 g~~~y~C~~C~tHLA~~~el 30 (135)
+.+.|.|..|..-....+.|
T Consensus 4 ~~k~~~C~~C~k~f~~~~~L 23 (35)
T 2elx_A 4 GSSGYVCALCLKKFVSSIRL 23 (35)
T ss_dssp CCCSEECSSSCCEESSHHHH
T ss_pred CCCCeECCCCcchhCCHHHH
Confidence 45779999998776665544
No 24
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.22 E-value=13 Score=18.74 Aligned_cols=20 Identities=15% Similarity=0.411 Sum_probs=14.2
Q ss_pred CCcEEeccCCCCccCCCCCe
Q 032714 11 GRSYYKCRFCNSHLALADSV 30 (135)
Q Consensus 11 g~~~y~C~~C~tHLA~~~el 30 (135)
+.+.|.|..|..-....+.|
T Consensus 6 ~~k~~~C~~C~k~f~~~~~l 25 (36)
T 2elv_A 6 SGLLYDCHICERKFKNELDR 25 (36)
T ss_dssp CCCCEECSSSCCEESSHHHH
T ss_pred CCCCeECCCCCCccCCHHHH
Confidence 35789999998766555443
No 25
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.52 E-value=13 Score=18.78 Aligned_cols=20 Identities=15% Similarity=0.443 Sum_probs=14.9
Q ss_pred CCcEEeccCCCCccCCCCCe
Q 032714 11 GRSYYKCRFCNSHLALADSV 30 (135)
Q Consensus 11 g~~~y~C~~C~tHLA~~~el 30 (135)
+.+.|.|..|..-+...+.|
T Consensus 6 ~~k~~~C~~C~k~f~~~~~l 25 (36)
T 2elq_A 6 SGKPFKCSLCEYATRSKSNL 25 (36)
T ss_dssp CCCSEECSSSSCEESCHHHH
T ss_pred CCCCccCCCCCchhCCHHHH
Confidence 45789999998877665544
No 26
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=27.16 E-value=15 Score=17.01 Aligned_cols=18 Identities=17% Similarity=0.447 Sum_probs=13.0
Q ss_pred EEeccCCCCccCCCCCee
Q 032714 14 YYKCRFCNSHLALADSVL 31 (135)
Q Consensus 14 ~y~C~~C~tHLA~~~elI 31 (135)
.|.|..|..-......|.
T Consensus 2 ~~~C~~C~~~f~~~~~l~ 19 (29)
T 2m0e_A 2 EHKCPHCDKKFNQVGNLK 19 (29)
T ss_dssp CCCCSSCCCCCCTTTHHH
T ss_pred CCcCCCCCcccCCHHHHH
Confidence 578999987777665543
No 27
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=27.08 E-value=32 Score=24.88 Aligned_cols=30 Identities=13% Similarity=0.008 Sum_probs=26.1
Q ss_pred ecCCCeEEEeeccccCCCCcccceeecccc
Q 032714 36 NCRRGRAYLFSDVVNIMLGPQEERLMLSGM 65 (135)
Q Consensus 36 ~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~ 65 (135)
.|+||.|+.=-++.|+..|...++..-+|-
T Consensus 39 pGKhG~A~vr~k~knl~tG~~~e~tf~s~~ 68 (136)
T 2eif_A 39 PGKHGGAKARVVGIGIFEKVKKEFVAPTSS 68 (136)
T ss_dssp CCSSSCCEEEEEEEESSSCCEEEEEEETTS
T ss_pred CCCCCceEEEEEEEEcCCCCeEEEEecCCC
Confidence 599999998889999999999887777764
No 28
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.00 E-value=19 Score=18.23 Aligned_cols=20 Identities=15% Similarity=0.436 Sum_probs=14.7
Q ss_pred CCcEEeccCCCCccCCC-CCe
Q 032714 11 GRSYYKCRFCNSHLALA-DSV 30 (135)
Q Consensus 11 g~~~y~C~~C~tHLA~~-~el 30 (135)
+.+.|.|..|..-.... +.|
T Consensus 6 ~~k~~~C~~C~k~f~~~~~~L 26 (37)
T 2elp_A 6 SGRAMKCPYCDFYFMKNGSDL 26 (37)
T ss_dssp CCCCEECSSSSCEECSSCHHH
T ss_pred CCCCeECCCCChhhccCHHHH
Confidence 45789999998776665 444
No 29
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=26.54 E-value=12 Score=17.65 Aligned_cols=18 Identities=22% Similarity=0.694 Sum_probs=12.8
Q ss_pred cEEeccCCCCccCCCCCe
Q 032714 13 SYYKCRFCNSHLALADSV 30 (135)
Q Consensus 13 ~~y~C~~C~tHLA~~~el 30 (135)
+.|.|..|..-....+.|
T Consensus 2 k~~~C~~C~k~f~~~~~l 19 (28)
T 2kvf_A 2 RPYSCSVCGKRFSLKHQM 19 (28)
T ss_dssp CSEECSSSCCEESCHHHH
T ss_pred cCccCCCCCcccCCHHHH
Confidence 468999998766655444
No 30
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=26.30 E-value=16 Score=17.10 Aligned_cols=17 Identities=18% Similarity=0.532 Sum_probs=12.1
Q ss_pred EEeccCCCCccCCCCCe
Q 032714 14 YYKCRFCNSHLALADSV 30 (135)
Q Consensus 14 ~y~C~~C~tHLA~~~el 30 (135)
.|.|..|.......+.|
T Consensus 2 ~~~C~~C~k~f~~~~~l 18 (29)
T 1rik_A 2 KFACPECPKRFMRSDHL 18 (29)
T ss_dssp CEECSSSSCEESCSHHH
T ss_pred CccCCCCCchhCCHHHH
Confidence 58899998776665544
No 31
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=31.97 E-value=14 Score=17.40 Aligned_cols=19 Identities=21% Similarity=0.481 Sum_probs=13.4
Q ss_pred cEEeccCCCCccCCCCCee
Q 032714 13 SYYKCRFCNSHLALADSVL 31 (135)
Q Consensus 13 ~~y~C~~C~tHLA~~~elI 31 (135)
+.|.|..|.........|.
T Consensus 2 k~~~C~~C~k~f~~~~~l~ 20 (30)
T 2lvr_A 2 KPYVCIHCQRQFADPGALQ 20 (30)
Confidence 4688999987766655543
No 32
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.96 E-value=15 Score=18.41 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=14.4
Q ss_pred CCcEEeccCCCCccCCCCCe
Q 032714 11 GRSYYKCRFCNSHLALADSV 30 (135)
Q Consensus 11 g~~~y~C~~C~tHLA~~~el 30 (135)
+.+.|.|..|..-......|
T Consensus 6 ~~k~~~C~~C~k~f~~~~~l 25 (36)
T 2elt_A 6 SGKPYKCPQCSYASAIKANL 25 (36)
T ss_dssp CCCSEECSSSSCEESSHHHH
T ss_pred CCCCCCCCCCCcccCCHHHH
Confidence 45789999998766655444
No 33
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.92 E-value=15 Score=18.51 Aligned_cols=20 Identities=20% Similarity=0.700 Sum_probs=14.6
Q ss_pred CCcEEeccCCCCccCCCCCe
Q 032714 11 GRSYYKCRFCNSHLALADSV 30 (135)
Q Consensus 11 g~~~y~C~~C~tHLA~~~el 30 (135)
+.+.|.|..|..-+.....|
T Consensus 6 ~~k~~~C~~C~k~f~~~~~l 25 (36)
T 2els_A 6 SGKIFTCEYCNKVFKFKHSL 25 (36)
T ss_dssp CCCCEECTTTCCEESSHHHH
T ss_pred CCCCEECCCCCceeCCHHHH
Confidence 35789999998776665544
No 34
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.72 E-value=13 Score=17.42 Aligned_cols=18 Identities=22% Similarity=0.630 Sum_probs=12.7
Q ss_pred cEEeccCCCCccCCCCCe
Q 032714 13 SYYKCRFCNSHLALADSV 30 (135)
Q Consensus 13 ~~y~C~~C~tHLA~~~el 30 (135)
+.|.|..|..-......|
T Consensus 2 k~~~C~~C~~~f~~~~~l 19 (30)
T 2m0d_A 2 KPYQCDYCGRSFSDPTSK 19 (30)
T ss_dssp CCEECTTTCCEESCHHHH
T ss_pred cCccCCCCCcccCCHHHH
Confidence 568999998766655444
No 35
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=24.92 E-value=16 Score=18.99 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=15.5
Q ss_pred CCcEEeccCCCCccCCCCCee
Q 032714 11 GRSYYKCRFCNSHLALADSVL 31 (135)
Q Consensus 11 g~~~y~C~~C~tHLA~~~elI 31 (135)
+.+.|.|..|..-+...+.|.
T Consensus 8 ~~~~~~C~~C~k~f~~~~~l~ 28 (42)
T 2epc_A 8 GETPYLCGQCGKSFTQRGSLA 28 (42)
T ss_dssp SSCCEECSSSCCEESSHHHHH
T ss_pred CCCCeECCCCCcccCCHHHHH
Confidence 457899999987776655543
No 36
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=24.70 E-value=13 Score=18.88 Aligned_cols=20 Identities=20% Similarity=0.592 Sum_probs=14.7
Q ss_pred CCcEEeccCCCCccCCCCCe
Q 032714 11 GRSYYKCRFCNSHLALADSV 30 (135)
Q Consensus 11 g~~~y~C~~C~tHLA~~~el 30 (135)
+.+.|.|..|..-....+.|
T Consensus 8 ~~k~~~C~~C~k~f~~~~~l 27 (37)
T 1p7a_A 8 GIKPFQCPDCDRSFSRSDHL 27 (37)
T ss_dssp CSSSBCCTTTCCCBSSHHHH
T ss_pred CCCCccCCCCCcccCcHHHH
Confidence 45789999998776665544
No 37
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.53 E-value=21 Score=18.87 Aligned_cols=21 Identities=19% Similarity=0.586 Sum_probs=15.9
Q ss_pred CCcEEeccCCCCccCCCCCee
Q 032714 11 GRSYYKCRFCNSHLALADSVL 31 (135)
Q Consensus 11 g~~~y~C~~C~tHLA~~~elI 31 (135)
+++.|.|..|..-....+.|.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~ 29 (44)
T 2yu5_A 9 GENPFKCSKCDRVFTQRNYLV 29 (44)
T ss_dssp CCCSEECSSSSCEESSSHHHH
T ss_pred CCCCeECCCCCchhCCHHHHH
Confidence 457899999988777666554
No 38
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=24.16 E-value=29 Score=20.82 Aligned_cols=13 Identities=15% Similarity=0.427 Sum_probs=10.2
Q ss_pred EEeccCCCCccCC
Q 032714 14 YYKCRFCNSHLAL 26 (135)
Q Consensus 14 ~y~C~~C~tHLA~ 26 (135)
-|.|..|+.+|..
T Consensus 31 CF~C~~C~~~L~~ 43 (66)
T 1nyp_A 31 HFVCAKCEKPFLG 43 (66)
T ss_dssp TCBCTTTCCBCSS
T ss_pred cCEECCCCCCCCC
Confidence 4788888888864
No 39
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.77 E-value=39 Score=20.50 Aligned_cols=24 Identities=29% Similarity=0.631 Sum_probs=15.0
Q ss_pred EEeccCCCCccCCCCCeeceeeecCCCeEE
Q 032714 14 YYKCRFCNSHLALADSVLSWSFNCRRGRAY 43 (135)
Q Consensus 14 ~y~C~~C~tHLA~~~elISK~F~G~~GrAy 43 (135)
-|.|..|+.+|. ...|.-..|+.|
T Consensus 33 CF~C~~C~~~L~------~~~~~~~~~~~y 56 (72)
T 1x61_A 33 CFVCSTCRAQLR------GQHFYAVERRAY 56 (72)
T ss_dssp TCBCSSSCCBCT------TSCEEESSSCEE
T ss_pred CCcccccCCcCC------cCcCEeeCCeEE
Confidence 478888888884 233544555554
No 40
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=23.56 E-value=36 Score=28.91 Aligned_cols=70 Identities=19% Similarity=0.289 Sum_probs=40.7
Q ss_pred cEEeccCCCCccCCCCCe--eceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeee--ecCCceeeEEEE
Q 032714 13 SYYKCRFCNSHLALADSV--LSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC--CCGQIVGWKYVS 86 (135)
Q Consensus 13 ~~y~C~~C~tHLA~~~el--ISK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~--~C~t~LGWKYe~ 86 (135)
....|.+|...++..++| +..+.+=.-.++ |..-+.+.+ ++..+. .-.......|+|. .|++.+|-.+..
T Consensus 577 ~~~~c~~c~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~-~~~~~~-~~~~~~~~~~~c~~~~c~~~~g~~~~~ 650 (696)
T 2ykg_A 577 KKLLCRKCKALACYTADVRVIEDCHYTVLGDA--FKECFVSRP-HPKPKQ-FSSFEKRAKIFCARQNCSHDWGIHVKY 650 (696)
T ss_dssp EEEEESSSCCEEEEGGGEEEETTTEEEECSTT--GGGTEEEEE-EEEEEE-CSSCEEEEEEEESSTTTCCEEEEEEEE
T ss_pred hhhhccCCCceeeecchhhhhcCCCeeecCHH--hHhHeeecc-CCcccc-ccccccCCceEeCCCCCCccccceEEE
Confidence 457899999999999985 333332222223 111122221 111222 2345667888999 999999986643
No 41
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.85 E-value=13 Score=18.88 Aligned_cols=21 Identities=14% Similarity=0.426 Sum_probs=15.3
Q ss_pred CCcEEeccCCCCccCCCCCee
Q 032714 11 GRSYYKCRFCNSHLALADSVL 31 (135)
Q Consensus 11 g~~~y~C~~C~tHLA~~~elI 31 (135)
+.+.|.|..|..-+...+.|.
T Consensus 6 ~~k~~~C~~C~k~f~~~~~l~ 26 (37)
T 2elo_A 6 SGRSYSCPVCEKSFSEDRLIK 26 (37)
T ss_dssp CCCCCEETTTTEECSSHHHHH
T ss_pred CCCCcCCCCCCCccCCHHHHH
Confidence 457899999987776655543
No 42
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.70 E-value=17 Score=18.97 Aligned_cols=21 Identities=24% Similarity=0.604 Sum_probs=15.4
Q ss_pred CCcEEeccCCCCccCCCCCee
Q 032714 11 GRSYYKCRFCNSHLALADSVL 31 (135)
Q Consensus 11 g~~~y~C~~C~tHLA~~~elI 31 (135)
+++.|.|..|..-....+.|.
T Consensus 8 ~~k~~~C~~C~k~f~~~~~L~ 28 (42)
T 2en2_A 8 GEKPYKCETCGARFVQVAHLR 28 (42)
T ss_dssp SSCSEECTTTCCEESSHHHHH
T ss_pred CCCCEeCCCcChhhCCHHHHH
Confidence 467899999987766655543
No 43
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=22.58 E-value=18 Score=18.73 Aligned_cols=21 Identities=24% Similarity=0.559 Sum_probs=15.2
Q ss_pred CCcEEeccCCCCccCCCCCee
Q 032714 11 GRSYYKCRFCNSHLALADSVL 31 (135)
Q Consensus 11 g~~~y~C~~C~tHLA~~~elI 31 (135)
+++.|.|..|..-+...+.|.
T Consensus 3 ~~k~~~C~~C~k~f~~~~~L~ 23 (39)
T 1njq_A 3 PPRSYTCSFCKREFRSAQALG 23 (39)
T ss_dssp CSSSEECTTTCCEESSHHHHH
T ss_pred CCCceECCCCCcccCCHHHHH
Confidence 356799999987776655544
No 44
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=28.22 E-value=18 Score=17.06 Aligned_cols=18 Identities=22% Similarity=0.573 Sum_probs=12.5
Q ss_pred EEeccCCCCccCCCCCee
Q 032714 14 YYKCRFCNSHLALADSVL 31 (135)
Q Consensus 14 ~y~C~~C~tHLA~~~elI 31 (135)
.|.|..|..-......|.
T Consensus 2 ~~~C~~C~k~f~~~~~l~ 19 (29)
T 2lvt_A 2 PCQCVMCGKAFTQASSLI 19 (29)
Confidence 588888887666655553
No 45
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=22.43 E-value=15 Score=17.19 Aligned_cols=18 Identities=22% Similarity=0.634 Sum_probs=13.1
Q ss_pred EEeccCCCCccCCCCCee
Q 032714 14 YYKCRFCNSHLALADSVL 31 (135)
Q Consensus 14 ~y~C~~C~tHLA~~~elI 31 (135)
.|.|..|..-....+.|.
T Consensus 2 ~~~C~~C~k~f~~~~~l~ 19 (30)
T 1klr_A 2 TYQCQYCEFRSADSSNLK 19 (30)
T ss_dssp CCCCSSSSCCCSCSHHHH
T ss_pred CccCCCCCCccCCHHHHH
Confidence 478999988777666554
No 46
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.33 E-value=15 Score=18.39 Aligned_cols=21 Identities=10% Similarity=0.305 Sum_probs=15.5
Q ss_pred CCcEEeccCCCCccCCCCCee
Q 032714 11 GRSYYKCRFCNSHLALADSVL 31 (135)
Q Consensus 11 g~~~y~C~~C~tHLA~~~elI 31 (135)
+.+.|.|..|..-+.....|.
T Consensus 6 ~~~~~~C~~C~k~f~~~~~l~ 26 (36)
T 2elr_A 6 SGKTHLCDMCGKKFKSKGTLK 26 (36)
T ss_dssp CCSSCBCTTTCCBCSSHHHHH
T ss_pred CCCCeecCcCCCCcCchHHHH
Confidence 457899999998777665543
No 47
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=22.14 E-value=29 Score=20.99 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=15.8
Q ss_pred cEEeccCCCCccCCCCCeeceeeecCCCeEE
Q 032714 13 SYYKCRFCNSHLALADSVLSWSFNCRRGRAY 43 (135)
Q Consensus 13 ~~y~C~~C~tHLA~~~elISK~F~G~~GrAy 43 (135)
.-|.|..|+.+|.. +.|.-+.|+.|
T Consensus 31 ~CF~C~~C~~~L~~------~~f~~~~g~~y 55 (65)
T 2iyb_E 31 ECFLCSCCSKCLIG------QKFMPVEGMVF 55 (65)
T ss_dssp TTSBCTTTCCBCTT------SCCEEETTEEE
T ss_pred CCEECCCCCCcCCC------CceEEECCEEe
Confidence 34789999888863 33444455555
No 48
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=21.40 E-value=52 Score=23.85 Aligned_cols=30 Identities=17% Similarity=0.125 Sum_probs=26.5
Q ss_pred ecCCCeEEEeeccccCCCCcccceeecccc
Q 032714 36 NCRRGRAYLFSDVVNIMLGPQEERLMLSGM 65 (135)
Q Consensus 36 ~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~ 65 (135)
.|+||.|+.=-++.|+..|...++..-+|-
T Consensus 35 pGKhG~A~vr~k~knl~tG~~~e~tf~s~~ 64 (138)
T 1iz6_A 35 PGKHGSAKARIEAVGIFDGKVRSIVKPTSA 64 (138)
T ss_dssp CCTTSCCEEEEEEEETTTCCEEEEEEETTS
T ss_pred CCCCCceEEEEEEEECCCCCEEEEEecCCC
Confidence 699999998889999999999888877774
No 49
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=21.34 E-value=53 Score=22.34 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=14.8
Q ss_pred EEeeeeeeecCCceeeEEE
Q 032714 67 TVEDIFCCCCGQIVGWKYV 85 (135)
Q Consensus 67 tV~DI~C~~C~t~LGWKYe 85 (135)
.+.-.||..|++.|-|...
T Consensus 64 ~~~r~FC~~CGs~l~~~~~ 82 (118)
T 3fac_A 64 TAKHWFCRTCGIYTHHQRR 82 (118)
T ss_dssp CSEEEEETTTCCEEEEECS
T ss_pred CEeeEECCCCCccccCccC
Confidence 3556799999999988653
No 50
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.26 E-value=12 Score=17.79 Aligned_cols=17 Identities=24% Similarity=0.589 Sum_probs=11.6
Q ss_pred cEEeccCCCCccCCCCC
Q 032714 13 SYYKCRFCNSHLALADS 29 (135)
Q Consensus 13 ~~y~C~~C~tHLA~~~e 29 (135)
+.|.|..|..-....+.
T Consensus 2 k~~~C~~C~k~f~~~~~ 18 (27)
T 2kvg_A 2 APYRCPLCRAGCPSLAS 18 (27)
T ss_dssp CTEEETTTTEEESCHHH
T ss_pred cCcCCCCCCcccCCHHH
Confidence 46899999866555443
No 51
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.43 E-value=23 Score=18.39 Aligned_cols=21 Identities=24% Similarity=0.618 Sum_probs=15.2
Q ss_pred CCcEEeccCCCCccCCCCCee
Q 032714 11 GRSYYKCRFCNSHLALADSVL 31 (135)
Q Consensus 11 g~~~y~C~~C~tHLA~~~elI 31 (135)
+++.|.|..|..-....+.|.
T Consensus 7 ~~k~~~C~~C~k~f~~~~~L~ 27 (41)
T 2ept_A 7 GQRVYECQECGKSFRQKGSLT 27 (41)
T ss_dssp CCCCEECSSSCCEESSHHHHH
T ss_pred CCCCeECCCCCCCcCCHHHHH
Confidence 457899999987766655543
No 52
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.28 E-value=31 Score=18.45 Aligned_cols=21 Identities=14% Similarity=0.472 Sum_probs=15.2
Q ss_pred CCcEEeccCCCCccCCCCCee
Q 032714 11 GRSYYKCRFCNSHLALADSVL 31 (135)
Q Consensus 11 g~~~y~C~~C~tHLA~~~elI 31 (135)
+.+.|.|..|..-....+.|.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2eoy_A 9 KEKCFKCNKCEKTFSCSKYLT 29 (46)
T ss_dssp CSCCEECSSSCCEESSSHHHH
T ss_pred CCCCEECcCCCCcCCCHHHHH
Confidence 457899999987666655543
Done!