Query 032716
Match_columns 135
No_of_seqs 143 out of 1071
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 07:43:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032716.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032716hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ayz_A UBC2, ubiquitin-conjuga 100.0 1.9E-45 6.6E-50 264.4 15.1 125 1-125 1-125 (169)
2 2aak_A UBC1, ubiquitin conjuga 100.0 4.5E-45 1.5E-49 258.5 15.2 125 1-125 1-125 (152)
3 2c2v_B Ubiquitin-conjugating e 100.0 4E-45 1.4E-49 259.3 13.1 126 1-126 2-127 (154)
4 2ucz_A UBC7, ubiquitin conjuga 100.0 1.1E-44 3.6E-49 259.6 15.4 125 1-125 1-139 (165)
5 2fo3_A Ubiquitin-conjugating e 100.0 1.1E-44 3.7E-49 249.1 14.0 120 1-121 4-124 (125)
6 1zdn_A Ubiquitin-conjugating e 100.0 1.1E-44 3.8E-49 258.0 14.3 125 1-125 10-134 (158)
7 4gpr_A Ubiquitin-conjugating e 100.0 3E-44 1E-48 254.0 16.1 124 2-125 2-125 (151)
8 2e2c_A Ubiquitin conjugating e 100.0 2.1E-44 7.1E-49 256.1 15.1 126 1-126 6-131 (156)
9 2ayv_A Ubiquitin-conjugating e 100.0 5.4E-44 1.8E-48 256.2 15.9 124 2-125 19-142 (166)
10 1z2u_A Ubiquitin-conjugating e 100.0 3.8E-44 1.3E-48 253.2 14.9 124 2-125 2-125 (150)
11 2c4o_A Ubiquitin-conjugating e 100.0 1.1E-43 3.8E-48 254.4 16.3 123 3-125 18-140 (165)
12 3h8k_A Ubiquitin-conjugating e 100.0 1.1E-43 3.9E-48 254.0 16.1 125 2-126 1-139 (164)
13 1yrv_A Ubiquitin-conjugating l 100.0 2.8E-44 9.7E-49 258.3 12.8 126 1-126 20-148 (169)
14 1i7k_A Ubiquitin-conjugating e 100.0 3.7E-44 1.3E-48 259.7 13.4 125 1-125 27-151 (179)
15 2bep_A Ubiquitin-conjugating e 100.0 1.3E-43 4.3E-48 252.7 15.6 125 1-125 5-133 (159)
16 1yh2_A HSPC150 protein similar 100.0 1.6E-43 5.4E-48 254.5 16.2 124 2-125 2-129 (169)
17 2r0j_A Ubiquitin carrier prote 100.0 6.5E-44 2.2E-48 251.8 13.6 121 5-125 2-122 (149)
18 1jat_A Ubiquitin-conjugating e 100.0 5.3E-44 1.8E-48 253.7 13.2 125 3-127 4-128 (155)
19 2gjd_A Ubiquitin-conjugating e 100.0 1E-43 3.6E-48 252.7 13.9 125 1-125 1-132 (157)
20 2h2y_A Ubiquitin-conjugating e 100.0 4.1E-43 1.4E-47 244.4 15.4 115 4-118 20-135 (136)
21 3rz3_A Ubiquitin-conjugating e 100.0 4.3E-43 1.5E-47 255.1 15.9 125 1-125 3-142 (183)
22 3rcz_B SUMO-conjugating enzyme 100.0 2.6E-43 8.9E-48 252.0 14.4 125 2-126 8-139 (163)
23 3k9o_A Ubiquitin-conjugating e 100.0 2.6E-43 9E-48 259.5 14.6 125 1-125 2-130 (201)
24 2awf_A Ubiquitin-conjugating e 100.0 4E-43 1.4E-47 253.0 15.0 129 2-130 15-157 (172)
25 1fxt_A Ubiquitin-conjugating e 100.0 1.8E-43 6.1E-48 249.5 12.6 121 5-125 2-124 (149)
26 2grr_A Ubiquitin-conjugating e 100.0 4.4E-43 1.5E-47 250.4 14.1 125 1-125 4-135 (161)
27 2pwq_A Ubiquitin conjugating e 100.0 4E-43 1.4E-47 260.8 13.5 124 1-124 20-144 (216)
28 3bzh_A Ubiquitin-conjugating e 100.0 1.8E-42 6E-47 253.7 16.1 123 3-125 47-169 (194)
29 2a7l_A Hypothetical ubiquitin- 100.0 5.2E-43 1.8E-47 243.8 12.2 113 1-114 20-136 (136)
30 1wzv_A Ubiquitin-conjugating e 100.0 2.8E-42 9.7E-47 244.8 13.7 123 2-125 2-126 (155)
31 2f4z_A Tgtwinscan_2721 - E2 do 100.0 2.8E-42 9.6E-47 252.4 14.0 122 4-125 32-167 (193)
32 3e46_A Ubiquitin-conjugating e 100.0 5.7E-42 1.9E-46 259.6 15.7 125 1-125 54-182 (253)
33 2y9m_A Ubiquitin-conjugating e 100.0 1.2E-41 4.1E-46 245.3 15.2 125 1-125 3-142 (172)
34 2a4d_A Ubiquitin-conjugating e 100.0 2.7E-41 9.1E-46 240.7 16.1 125 2-126 23-155 (160)
35 1y8x_A Ubiquitin-conjugating e 100.0 1.6E-41 5.5E-46 242.1 14.2 120 3-125 5-125 (160)
36 2q0v_A Ubiquitin-conjugating e 100.0 2.3E-41 7.9E-46 240.3 13.8 127 3-130 20-153 (156)
37 1jat_B Ubiquitin-conjugating e 100.0 6.2E-42 2.1E-46 238.9 10.4 126 1-127 2-135 (138)
38 1tte_A Ubiquitin-conjugating e 100.0 3.2E-42 1.1E-46 255.7 9.5 122 4-125 2-125 (215)
39 2nvu_C NEDD8-conjugating enzym 100.0 2.9E-41 1E-45 244.8 13.4 121 2-125 24-145 (180)
40 3fn1_B NEDD8-conjugating enzym 100.0 1E-40 3.5E-45 239.3 14.5 123 3-126 13-143 (167)
41 1c4z_D UBCH7, ubiquitin conjug 100.0 3.8E-41 1.3E-45 238.8 11.4 120 5-125 3-124 (154)
42 2hlw_A Ubiquitin-conjugating e 100.0 1.5E-40 5.1E-45 239.1 12.6 123 3-125 34-164 (170)
43 2onu_A Ubiquitin-conjugating e 100.0 2.5E-41 8.5E-46 239.3 7.1 120 4-126 2-123 (152)
44 2z5d_A Ubiquitin-conjugating e 100.0 7.3E-41 2.5E-45 242.3 8.7 122 1-126 20-145 (179)
45 4ds2_A Ubiquitin-conjugating e 100.0 1.3E-40 4.3E-45 238.9 9.8 125 1-125 5-146 (167)
46 4ddg_A Ubiquitin-conjugating e 100.0 8.1E-40 2.8E-44 261.9 15.0 123 3-125 2-124 (399)
47 3o2u_A NEDD8-conjugating enzym 100.0 9.8E-40 3.3E-44 238.6 13.6 120 3-125 28-154 (190)
48 1yf9_A Ubiquitin carrier prote 100.0 5.2E-40 1.8E-44 236.5 9.6 118 4-125 12-131 (171)
49 1zuo_A Hypothetical protein LO 100.0 5E-40 1.7E-44 239.4 9.0 123 1-123 24-163 (186)
50 2f4w_A Ubiquitin-conjugating e 100.0 1.3E-38 4.4E-43 232.1 13.4 117 3-121 13-132 (187)
51 3ceg_A Baculoviral IAP repeat- 100.0 1.1E-37 3.7E-42 242.5 14.1 124 1-124 73-215 (323)
52 2z6o_A UFM1-conjugating enzyme 100.0 4.7E-31 1.6E-35 186.8 1.3 95 6-106 34-143 (172)
53 3r3q_A Suppressor protein STP2 99.8 9.5E-21 3.3E-25 134.6 10.3 114 6-120 30-161 (162)
54 3kpa_A Probable ubiquitin fold 99.8 5.7E-22 2E-26 137.6 -0.0 96 5-106 35-145 (168)
55 3obq_A Tumor susceptibility ge 99.6 1.4E-15 4.7E-20 106.3 6.8 85 29-119 49-142 (146)
56 3zqs_A E3 ubiquitin-protein li 96.7 0.016 5.6E-07 41.5 9.4 84 7-114 4-87 (186)
57 2ebm_A RWD domain-containing p 96.7 0.015 5E-07 38.6 8.7 67 6-74 12-78 (128)
58 2day_A Ring finger protein 25; 96.0 0.075 2.6E-06 35.1 9.2 106 7-116 11-125 (128)
59 2yz0_A Serine/threonine-protei 95.7 0.14 4.6E-06 34.3 9.6 68 7-75 13-86 (138)
60 1ukx_A GCN2, GCN2 EIF2alpha ki 93.6 0.57 1.9E-05 31.0 8.3 107 6-115 12-128 (137)
61 2ebk_A RWD domain-containing p 92.6 0.2 6.7E-06 33.1 4.7 66 8-74 11-79 (128)
62 2daw_A RWD domain containing p 91.5 0.2 6.8E-06 34.4 3.9 24 52-75 76-99 (154)
63 2dax_A Protein C21ORF6; RWD do 91.5 0.15 5.2E-06 34.8 3.3 25 51-75 73-97 (152)
64 3u3c_B Paxillin LD2 peptide; 4 78.7 1.9 6.4E-05 20.1 2.3 21 4-24 5-25 (26)
65 3g9r_A Fusion complex of HIV-1 29.0 44 0.0015 17.4 2.2 15 4-18 28-42 (42)
66 2bum_A Protocatechuate 3,4-dio 28.0 60 0.0021 23.1 3.7 26 49-74 109-139 (209)
67 3pft_A Flavin reductase; desul 27.3 30 0.001 23.1 1.9 31 65-95 42-75 (157)
68 3rls_A YAF9, protein AF-9 homo 26.9 1.6E+02 0.0055 20.4 5.9 43 31-75 30-72 (175)
69 2rf4_B DNA-directed RNA polyme 23.2 43 0.0015 20.6 1.8 13 4-16 62-74 (87)
70 1m46_B IQ4, IQ4 motif from MYO 23.0 55 0.0019 15.0 1.7 13 5-17 9-21 (26)
No 1
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1.9e-45 Score=264.44 Aligned_cols=125 Identities=59% Similarity=1.112 Sum_probs=120.6
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCC
Q 032716 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (135)
Q Consensus 1 Ms~~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (135)
||+.+.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++||||
T Consensus 1 Ms~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPN 80 (169)
T 1ayz_A 1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPN 80 (169)
T ss_dssp -CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCC
Confidence 89899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCC
Q 032716 81 IYADGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIG 125 (135)
Q Consensus 81 V~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~ 125 (135)
|+.+|.||+++|.++|+|+++|.+||.+|++||.+|++.++++..
T Consensus 81 I~~~G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~ 125 (169)
T 1ayz_A 81 VYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVE 125 (169)
T ss_dssp BCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHH
T ss_pred CCCCCeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHH
Confidence 999999999999999999999999999999999999999987654
No 2
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=4.5e-45 Score=258.48 Aligned_cols=125 Identities=87% Similarity=1.355 Sum_probs=121.5
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCC
Q 032716 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (135)
Q Consensus 1 Ms~~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (135)
||+.+.+||++|++++++++++|+++.+.++|+++|+++|.||+||||+||.|++.|.||++||++||+|+|.|++||||
T Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 80 (152)
T 2aak_A 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPN 80 (152)
T ss_dssp CCCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCC
Q 032716 81 IYADGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIG 125 (135)
Q Consensus 81 V~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~ 125 (135)
|+.+|.||+++|.++|+|+++|.+||.+|+++|.+|+++++++..
T Consensus 81 v~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~ 125 (152)
T 2aak_A 81 IYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSE 125 (152)
T ss_dssp BCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHH
T ss_pred CCCCCEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCCCccccHH
Confidence 999999999999999999999999999999999999999987654
No 3
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4e-45 Score=259.31 Aligned_cols=126 Identities=38% Similarity=0.733 Sum_probs=119.9
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCC
Q 032716 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (135)
Q Consensus 1 Ms~~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (135)
||..+.+||++|+++++++++.|+++.+.++|+++|+++|.||+||||+||.|++.|.||++||++||+|+|.|++||||
T Consensus 2 ~s~~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 81 (154)
T 2c2v_B 2 GSAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPN 81 (154)
T ss_dssp CSCSCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCc
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCCc
Q 032716 81 IYADGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIGK 126 (135)
Q Consensus 81 V~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~~ 126 (135)
|+.+|.||+++|.++|+|+++|++||.+|++||.+|+++++++...
T Consensus 82 v~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~a 127 (154)
T 2c2v_B 82 VDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 127 (154)
T ss_dssp BCTTCBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHH
T ss_pred CccCCeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHH
Confidence 9999999999999999999999999999999999999999877643
No 4
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-44 Score=259.64 Aligned_cols=125 Identities=41% Similarity=0.832 Sum_probs=118.7
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEEecC-CCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccC
Q 032716 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQD-NNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHP 79 (135)
Q Consensus 1 Ms~~a~~Rl~kEl~~l~~~~~~~i~~~~~~-~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 79 (135)
||+.|.+||++|+++|++++++|+++.+.+ +|+++|+++|.||+||||+||.|++.|.||++||++||+|+|.|++|||
T Consensus 1 M~~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 80 (165)
T 2ucz_A 1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHP 80 (165)
T ss_dssp -CHHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccC
Confidence 899999999999999999999999999865 7999999999999999999999999999999999999999999999999
Q ss_pred CccCCCcEEccCC-------------CCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCC
Q 032716 80 NIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIG 125 (135)
Q Consensus 80 nV~~~G~icl~~l-------------~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~ 125 (135)
||+.+|+||+++| .++|+|+++|++||.+|++||.+|+++++++..
T Consensus 81 Nv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~ 139 (165)
T 2ucz_A 81 NIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANID 139 (165)
T ss_dssp TBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHH
T ss_pred CCCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHH
Confidence 9999999999999 688999999999999999999999999887643
No 5
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-44 Score=249.08 Aligned_cols=120 Identities=28% Similarity=0.582 Sum_probs=106.5
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccC-ccC
Q 032716 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM-FHP 79 (135)
Q Consensus 1 Ms~~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~Hp 79 (135)
|++ |.+||++|+++++++++.|+++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++ |||
T Consensus 4 m~~-a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HP 82 (125)
T 2fo3_A 4 MGN-ANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHT 82 (125)
T ss_dssp ------CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBT
T ss_pred chH-HHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCC
Confidence 543 779999999999999999999999999999999999999999999999999999999999999999999996 999
Q ss_pred CccCCCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCc
Q 032716 80 NIYADGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSF 121 (135)
Q Consensus 80 nV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~ 121 (135)
||+.+|+||+++|.++|+|++++++||.+|++||.+|+....
T Consensus 83 nv~~~G~iCl~iL~~~W~P~~~i~~vl~si~~ll~~p~~~~~ 124 (125)
T 2fo3_A 83 HVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEKKL 124 (125)
T ss_dssp TBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC-------
T ss_pred cCCCCCEEEchhcCCCCCCCCcHHHHHHHHHHHHhCcccccC
Confidence 999999999999999999999999999999999999987653
No 6
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-44 Score=257.99 Aligned_cols=125 Identities=29% Similarity=0.632 Sum_probs=120.8
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCC
Q 032716 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (135)
Q Consensus 1 Ms~~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (135)
||..+.+||++|++++++++++|+++.+.++|+++|+++|.||+||||+||.|++.|.||++||++||+|+|.|++||||
T Consensus 10 ~s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 89 (158)
T 1zdn_A 10 LPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPN 89 (158)
T ss_dssp SCHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred cCHHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCC
Q 032716 81 IYADGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIG 125 (135)
Q Consensus 81 V~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~ 125 (135)
|+.+|.||+++|.++|+|+++|++||.+|++||.+|+++++++..
T Consensus 90 v~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~ 134 (158)
T 1zdn_A 90 VGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEE 134 (158)
T ss_dssp BCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHH
T ss_pred CCCCCEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHH
Confidence 999999999999999999999999999999999999999887654
No 7
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=3e-44 Score=254.03 Aligned_cols=124 Identities=40% Similarity=0.792 Sum_probs=119.8
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCCc
Q 032716 2 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI 81 (135)
Q Consensus 2 s~~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV 81 (135)
|+.|.+||++|+++++++++.|+++.+.++|+++|+++|.||+||||+||.|++.|.||++||++||+|+|.|++|||||
T Consensus 2 a~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 81 (151)
T 4gpr_A 2 AAMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNI 81 (151)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCC
Q 032716 82 YADGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIG 125 (135)
Q Consensus 82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~ 125 (135)
+.+|.||+++|.++|+|+++|++||.+|+++|.+|+++++++..
T Consensus 82 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~ 125 (151)
T 4gpr_A 82 NKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPE 125 (151)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHH
T ss_pred CCCCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCchhHH
Confidence 99999999999999999999999999999999999999987654
No 8
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=2.1e-44 Score=256.06 Aligned_cols=126 Identities=38% Similarity=0.693 Sum_probs=120.4
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCC
Q 032716 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (135)
Q Consensus 1 Ms~~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (135)
|++.+.+||++|+++++++++.|+++.+.++|+++|+++|.||+||||+||.|++.|.||++||++||+|+|.|++||||
T Consensus 6 ~~~~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 85 (156)
T 2e2c_A 6 ERHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPN 85 (156)
T ss_dssp SCCCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred cchHHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCC
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCCc
Q 032716 81 IYADGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIGK 126 (135)
Q Consensus 81 V~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~~ 126 (135)
|+.+|.||+++|.++|+|+++|++||.+|++||.+|+++++++...
T Consensus 86 v~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~a 131 (156)
T 2e2c_A 86 VDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQA 131 (156)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHH
T ss_pred CccCceEECccccccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999887543
No 9
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=5.4e-44 Score=256.24 Aligned_cols=124 Identities=40% Similarity=0.796 Sum_probs=119.3
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCCc
Q 032716 2 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI 81 (135)
Q Consensus 2 s~~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV 81 (135)
++.+.+||++|+++++++++.|+++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|+|++|||||
T Consensus 19 ~~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI 98 (166)
T 2ayv_A 19 FQGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNI 98 (166)
T ss_dssp CTTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTB
T ss_pred CcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcC
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCC
Q 032716 82 YADGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIG 125 (135)
Q Consensus 82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~ 125 (135)
+.+|.||+++|.++|+|+++|++||.+|++||.+|+++++++..
T Consensus 99 ~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~ 142 (166)
T 2ayv_A 99 NSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPE 142 (166)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHH
T ss_pred CCCCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCCCchhhHH
Confidence 99999999999999999999999999999999999999887654
No 10
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=3.8e-44 Score=253.24 Aligned_cols=124 Identities=43% Similarity=0.795 Sum_probs=119.2
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCCc
Q 032716 2 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI 81 (135)
Q Consensus 2 s~~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV 81 (135)
|..+.+||++|+++++++++.|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||
T Consensus 2 s~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 81 (150)
T 1z2u_A 2 SHMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 81 (150)
T ss_dssp CCHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCC
Q 032716 82 YADGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIG 125 (135)
Q Consensus 82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~ 125 (135)
+.+|.||+++|.++|+|+++|.+||.+|++||.+|+++++++..
T Consensus 82 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~ 125 (150)
T 1z2u_A 82 NSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 125 (150)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHH
T ss_pred CCCCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCCCCccCHH
Confidence 99999999999999999999999999999999999999887654
No 11
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=1.1e-43 Score=254.40 Aligned_cols=123 Identities=43% Similarity=0.812 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCCcc
Q 032716 3 TPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY 82 (135)
Q Consensus 3 ~~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~ 82 (135)
+.+.+||++|+++++++++.|+++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 18 ~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~ 97 (165)
T 2c4o_A 18 SMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 97 (165)
T ss_dssp HHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCC
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCC
Q 032716 83 ADGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIG 125 (135)
Q Consensus 83 ~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~ 125 (135)
.+|.||+++|.++|+|+++|++||.+|++||.+|+++++++..
T Consensus 98 ~~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~ 140 (165)
T 2c4o_A 98 SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 140 (165)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHH
T ss_pred CCCeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCCCccccHH
Confidence 9999999999999999999999999999999999999887654
No 12
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=1.1e-43 Score=254.03 Aligned_cols=125 Identities=42% Similarity=0.790 Sum_probs=118.6
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCeEEEecCC-CCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCC
Q 032716 2 STPAKKRLMRDFKRLQQDPPAGISGAPQDN-NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (135)
Q Consensus 2 s~~a~~Rl~kEl~~l~~~~~~~i~~~~~~~-~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (135)
|+.|.+||++|+++++++++.|+++.+.++ |+++|+++|.||+||||+||.|++.|.||++||++||+|+|.|++||||
T Consensus 1 a~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPN 80 (164)
T 3h8k_A 1 AGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPN 80 (164)
T ss_dssp CCHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred CcHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCC
Confidence 467899999999999999999999998765 9999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEccCCC-------------CCCCCcCCHHHHHHHHHHhhcCCCCCCcccCCc
Q 032716 81 IYADGSICLDILQ-------------NQWSPIYDVAAILTSIQVKLRFDFSCSFLSIGK 126 (135)
Q Consensus 81 V~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~~ 126 (135)
|+.+|+||+++|. ++|+|+++|++||.+|++||.+|+++++++...
T Consensus 81 V~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~a 139 (164)
T 3h8k_A 81 IYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDA 139 (164)
T ss_dssp BCTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHH
T ss_pred CCCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHH
Confidence 9999999999997 789999999999999999999999999887543
No 13
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.8e-44 Score=258.32 Aligned_cols=126 Identities=33% Similarity=0.631 Sum_probs=121.1
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCC
Q 032716 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (135)
Q Consensus 1 Ms~~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (135)
|++.+.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|+|++||||
T Consensus 20 M~~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN 99 (169)
T 1yrv_A 20 MHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPN 99 (169)
T ss_dssp GGCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTT
T ss_pred cChHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCc
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-cCCCcEEccCCC--CCCCCcCCHHHHHHHHHHhhcCCCCCCcccCCc
Q 032716 81 I-YADGSICLDILQ--NQWSPIYDVAAILTSIQVKLRFDFSCSFLSIGK 126 (135)
Q Consensus 81 V-~~~G~icl~~l~--~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~~ 126 (135)
| +.+|.||+++|. ++|+|+++|++||.+|++||.+|+++++++...
T Consensus 100 I~~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~ea 148 (169)
T 1yrv_A 100 VDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEA 148 (169)
T ss_dssp BCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHH
T ss_pred ccCCCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHH
Confidence 9 799999999998 899999999999999999999999999877543
No 14
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.7e-44 Score=259.74 Aligned_cols=125 Identities=37% Similarity=0.634 Sum_probs=118.4
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCC
Q 032716 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (135)
Q Consensus 1 Ms~~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (135)
|++.+.+||++|+++|+++++.|+++.+.++|+++|+++|.||+||||+||.|++.|.||++||++||+|+|.|++||||
T Consensus 27 ~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN 106 (179)
T 1i7k_A 27 ARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPN 106 (179)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTT
T ss_pred cChHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCc
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCC
Q 032716 81 IYADGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIG 125 (135)
Q Consensus 81 V~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~ 125 (135)
|+.+|.||+++|.++|+|+++|.+||.+|++||.+|+++++++..
T Consensus 107 V~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~ 151 (179)
T 1i7k_A 107 VDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTH 151 (179)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHH
T ss_pred cccCCeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCcchhhHH
Confidence 999999999999999999999999999999999999999987654
No 15
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=1.3e-43 Score=252.75 Aligned_cols=125 Identities=34% Similarity=0.634 Sum_probs=119.1
Q ss_pred CChHHHHHHHHHHHHHhhC---CCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCc
Q 032716 1 MSTPAKKRLMRDFKRLQQD---PPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF 77 (135)
Q Consensus 1 Ms~~a~~Rl~kEl~~l~~~---~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 77 (135)
||+.+.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|
T Consensus 5 Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 84 (159)
T 2bep_A 5 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 84 (159)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred chHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCC
Confidence 7888999999999999985 5779999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc-CCCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCC
Q 032716 78 HPNIY-ADGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIG 125 (135)
Q Consensus 78 HpnV~-~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~ 125 (135)
||||+ .+|.||+++|.++|+|++++.+||.+|++||.+|+++++++..
T Consensus 85 HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~ 133 (159)
T 2bep_A 85 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAV 133 (159)
T ss_dssp BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHH
T ss_pred ccCCCCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCCCcccHH
Confidence 99999 5999999999999999999999999999999999999887653
No 16
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.6e-43 Score=254.47 Aligned_cols=124 Identities=35% Similarity=0.666 Sum_probs=119.4
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCCc
Q 032716 2 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI 81 (135)
Q Consensus 2 s~~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV 81 (135)
|+.+.+||++|+++++++++.|+++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 2 s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv 81 (169)
T 1yh2_A 2 SMQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNI 81 (169)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEccCCC----CCCCCcCCHHHHHHHHHHhhcCCCCCCcccCC
Q 032716 82 YADGSICLDILQ----NQWSPIYDVAAILTSIQVKLRFDFSCSFLSIG 125 (135)
Q Consensus 82 ~~~G~icl~~l~----~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~ 125 (135)
+.+|.||+++|. ++|+|+++|++||.+|++||.+|+++++++..
T Consensus 82 ~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~ 129 (169)
T 1yh2_A 82 DSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMAD 129 (169)
T ss_dssp CTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHH
T ss_pred CcCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHH
Confidence 999999999998 89999999999999999999999999887654
No 17
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=6.5e-44 Score=251.82 Aligned_cols=121 Identities=40% Similarity=0.773 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCCccCC
Q 032716 5 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYAD 84 (135)
Q Consensus 5 a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~ 84 (135)
+.+||++|++++++++++|+++.+.++|+++|+++|.||+||||+||.|++.|.||++||++||+|+|.|++|||||+.+
T Consensus 2 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~ 81 (149)
T 2r0j_A 2 IPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 81 (149)
T ss_dssp CCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCC
Q 032716 85 GSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIG 125 (135)
Q Consensus 85 G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~ 125 (135)
|+||+++|.++|+|+++|++||.+|++||.+|+++++++..
T Consensus 82 G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~ 122 (149)
T 2r0j_A 82 GRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSK 122 (149)
T ss_dssp CBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCH
T ss_pred CEEechhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCchhHH
Confidence 99999999999999999999999999999999999987754
No 18
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=5.3e-44 Score=253.75 Aligned_cols=125 Identities=35% Similarity=0.725 Sum_probs=119.7
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCCcc
Q 032716 3 TPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY 82 (135)
Q Consensus 3 ~~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~ 82 (135)
+.+.+||++|++++++++++|+++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|+|++|||||+
T Consensus 4 ~~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 83 (155)
T 1jat_A 4 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID 83 (155)
T ss_dssp CSCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBC
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCCcc
Q 032716 83 ADGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIGKR 127 (135)
Q Consensus 83 ~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~~~ 127 (135)
.+|.||+++|.++|+|+++|.+||.+|++||.+|+++++++....
T Consensus 84 ~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa 128 (155)
T 1jat_A 84 RLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVA 128 (155)
T ss_dssp TTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTH
T ss_pred CCCEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHH
Confidence 999999999999999999999999999999999999998877653
No 19
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=1e-43 Score=252.72 Aligned_cols=125 Identities=33% Similarity=0.674 Sum_probs=117.6
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEEecC-----CCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecc
Q 032716 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQD-----NNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (135)
Q Consensus 1 Ms~~a~~Rl~kEl~~l~~~~~~~i~~~~~~-----~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 75 (135)
||+.+.+||++|++++++++++|+++.+.+ +|+++|+++|.||+||||+||.|++.|.||++||++||+|+|.|+
T Consensus 1 Ms~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 80 (157)
T 2gjd_A 1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAG 80 (157)
T ss_dssp --CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCC
Confidence 898999999999999999999999998864 489999999999999999999999999999999999999999999
Q ss_pred CccCCccCCCcEEccCCCC--CCCCcCCHHHHHHHHHHhhcCCCCCCcccCC
Q 032716 76 MFHPNIYADGSICLDILQN--QWSPIYDVAAILTSIQVKLRFDFSCSFLSIG 125 (135)
Q Consensus 76 i~HpnV~~~G~icl~~l~~--~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~ 125 (135)
+|||||+.+|.||+++|.+ +|+|+++|++||.+|+++|.+|+++++++..
T Consensus 81 i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~ 132 (157)
T 2gjd_A 81 FYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEP 132 (157)
T ss_dssp CCCTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHH
T ss_pred CccCCCCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHH
Confidence 9999999999999999987 7999999999999999999999999988754
No 20
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=4.1e-43 Score=244.40 Aligned_cols=115 Identities=25% Similarity=0.579 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccC-ccCCcc
Q 032716 4 PAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM-FHPNIY 82 (135)
Q Consensus 4 ~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HpnV~ 82 (135)
.+.+||++|+++++++++.|+++.+.++|+++|+++|.||+||||+||.|++.|.||++||++||+|+|.|++ |||||+
T Consensus 20 ~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~ 99 (136)
T 2h2y_A 20 NANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVY 99 (136)
T ss_dssp SHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTTBC
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCcCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999996 999999
Q ss_pred CCCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCC
Q 032716 83 ADGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFS 118 (135)
Q Consensus 83 ~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~ 118 (135)
.+|+||+++|.++|+|++++++||.+|++||.+|+.
T Consensus 100 ~~G~ICl~iL~~~WsP~~ti~~vL~si~sll~~p~~ 135 (136)
T 2h2y_A 100 SNGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE 135 (136)
T ss_dssp TTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred CCCEEECccccCCCCCCCcHHHHHHHHHHHHhCcCc
Confidence 999999999999999999999999999999999875
No 21
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=4.3e-43 Score=255.09 Aligned_cols=125 Identities=36% Similarity=0.756 Sum_probs=117.0
Q ss_pred CC-hHHHHHHHHHHHHHhhCCCCCeEEE-ecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCcc
Q 032716 1 MS-TPAKKRLMRDFKRLQQDPPAGISGA-PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFH 78 (135)
Q Consensus 1 Ms-~~a~~Rl~kEl~~l~~~~~~~i~~~-~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 78 (135)
|+ +.|.+||++|+++++++++.|+++. +.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|+|++||
T Consensus 3 m~~~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 82 (183)
T 3rz3_A 3 MGSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWH 82 (183)
T ss_dssp --CCHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCC
T ss_pred CcchHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCcc
Confidence 44 4689999999999999999999999 678899999999999999999999999999999999999999999999999
Q ss_pred CCccCCCcEEccCCC-------------CCCCCcCCHHHHHHHHHHhhcCCCCCCcccCC
Q 032716 79 PNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQVKLRFDFSCSFLSIG 125 (135)
Q Consensus 79 pnV~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~ 125 (135)
|||+.+|.||+++|. ++|+|+++|++||.+|++||.+|+++++++..
T Consensus 83 PnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~ 142 (183)
T 3rz3_A 83 PNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVD 142 (183)
T ss_dssp TTBCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHH
T ss_pred CCCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHH
Confidence 999999999999996 78999999999999999999999999987654
No 22
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=2.6e-43 Score=252.01 Aligned_cols=125 Identities=37% Similarity=0.724 Sum_probs=117.7
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCeEEEecCC-----CCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccC
Q 032716 2 STPAKKRLMRDFKRLQQDPPAGISGAPQDN-----NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM 76 (135)
Q Consensus 2 s~~a~~Rl~kEl~~l~~~~~~~i~~~~~~~-----~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 76 (135)
|..|.+||+||++++++++++|+++.+.++ |+++|+++|.||+||||+||.|++.|.||++||++||+|+|.|++
T Consensus 8 ~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i 87 (163)
T 3rcz_B 8 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPL 87 (163)
T ss_dssp -CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred cHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCC
Confidence 457999999999999999999999998765 899999999999999999999999999999999999999999999
Q ss_pred ccCCccCCCcEEccCCCCC--CCCcCCHHHHHHHHHHhhcCCCCCCcccCCc
Q 032716 77 FHPNIYADGSICLDILQNQ--WSPIYDVAAILTSIQVKLRFDFSCSFLSIGK 126 (135)
Q Consensus 77 ~HpnV~~~G~icl~~l~~~--W~p~~~i~~il~~i~~ll~~~~~~~~~~~~~ 126 (135)
|||||+.+|.||+++|.+. |+|+++|++||.+|++||.+|+++++++...
T Consensus 88 ~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~a 139 (163)
T 3rcz_B 88 FHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEA 139 (163)
T ss_dssp CSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHH
T ss_pred ccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHH
Confidence 9999999999999999764 9999999999999999999999999876543
No 23
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=2.6e-43 Score=259.51 Aligned_cols=125 Identities=34% Similarity=0.632 Sum_probs=117.9
Q ss_pred CChHHHHHHHHHHHHHhhCC---CCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCc
Q 032716 1 MSTPAKKRLMRDFKRLQQDP---PAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF 77 (135)
Q Consensus 1 Ms~~a~~Rl~kEl~~l~~~~---~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 77 (135)
||+.|.+||++|++++++++ +.|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|
T Consensus 2 Ms~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 81 (201)
T 3k9o_A 2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 81 (201)
T ss_dssp --CTTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred CcHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcc
Confidence 89999999999999999873 679999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc-CCCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCC
Q 032716 78 HPNIY-ADGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIG 125 (135)
Q Consensus 78 HpnV~-~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~ 125 (135)
||||+ .+|.||+++|.++|+|+++|.+||.+|++||.+|+++++++..
T Consensus 82 HPnv~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~ 130 (201)
T 3k9o_A 82 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAV 130 (201)
T ss_dssp BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHH
T ss_pred cCCCcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHH
Confidence 99999 5999999999999999999999999999999999999987654
No 24
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=4e-43 Score=252.98 Aligned_cols=129 Identities=32% Similarity=0.656 Sum_probs=110.2
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCeEEEecC-CCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCC
Q 032716 2 STPAKKRLMRDFKRLQQDPPAGISGAPQD-NNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (135)
Q Consensus 2 s~~a~~Rl~kEl~~l~~~~~~~i~~~~~~-~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (135)
++.+.+||+||+++|+++++.|+++.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|+|++||||
T Consensus 15 ~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPN 94 (172)
T 2awf_A 15 VPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPN 94 (172)
T ss_dssp CCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred hHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCC
Confidence 34688999999999999999999999865 79999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEccCCC-------------CCCCCcCCHHHHHHHHHHhhcCCCCCCcccCCcceEE
Q 032716 81 IYADGSICLDILQ-------------NQWSPIYDVAAILTSIQVKLRFDFSCSFLSIGKRFCF 130 (135)
Q Consensus 81 V~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~~~~~~ 130 (135)
|+.+|+||+++|. ++|+|+++|++||.+|++||.+|+++++++...--.|
T Consensus 95 V~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~ 157 (172)
T 2awf_A 95 VDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEW 157 (172)
T ss_dssp BCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC--------------
T ss_pred CCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHH
Confidence 9999999999996 6899999999999999999999999999887765544
No 25
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=1.8e-43 Score=249.52 Aligned_cols=121 Identities=33% Similarity=0.666 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCC-CCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCCccC
Q 032716 5 AKKRLMRDFKRLQQDPPAGISGAPQDN-NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA 83 (135)
Q Consensus 5 a~~Rl~kEl~~l~~~~~~~i~~~~~~~-~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~ 83 (135)
+.+||++|++++++++++|+++.+.++ |+++|+++|.||+||||+||.|++.|.||++||++||+|+|.|++|||||+.
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~ 81 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS 81 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCS
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcC
Confidence 469999999999999999999999877 9999999999999999999999999999999999999999999999999997
Q ss_pred -CCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCC
Q 032716 84 -DGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIG 125 (135)
Q Consensus 84 -~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~ 125 (135)
+|.||+++|.++|+|++++++||.+|++||.+|+++++++..
T Consensus 82 ~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~ 124 (149)
T 1fxt_A 82 VTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAE 124 (149)
T ss_dssp SSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHH
T ss_pred CCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHH
Confidence 999999999999999999999999999999999999887654
No 26
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=4.4e-43 Score=250.40 Aligned_cols=125 Identities=38% Similarity=0.734 Sum_probs=118.7
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEEecC-----CCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecc
Q 032716 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQD-----NNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (135)
Q Consensus 1 Ms~~a~~Rl~kEl~~l~~~~~~~i~~~~~~-----~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 75 (135)
||+.+.+||++|++++++++++|+++.+.+ +|+++|+++|.||+||||+||.|++.|.||++||++||+|+|.|+
T Consensus 4 M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 83 (161)
T 2grr_A 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP 83 (161)
T ss_dssp CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecC
Confidence 888899999999999999999999998753 689999999999999999999999999999999999999999999
Q ss_pred CccCCccCCCcEEccCCCC--CCCCcCCHHHHHHHHHHhhcCCCCCCcccCC
Q 032716 76 MFHPNIYADGSICLDILQN--QWSPIYDVAAILTSIQVKLRFDFSCSFLSIG 125 (135)
Q Consensus 76 i~HpnV~~~G~icl~~l~~--~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~ 125 (135)
+|||||+.+|.||+++|.+ +|+|+++|.+||.+|++||.+|++.++++..
T Consensus 84 i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~ 135 (161)
T 2grr_A 84 LFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAE 135 (161)
T ss_dssp CCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHH
T ss_pred cccCCCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHH
Confidence 9999999999999999986 8999999999999999999999999887653
No 27
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=4e-43 Score=260.77 Aligned_cols=124 Identities=34% Similarity=0.691 Sum_probs=119.0
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCC
Q 032716 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (135)
Q Consensus 1 Ms~~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (135)
+++.+.+||++|++++++++++|+++.+.++|+++|+++|.||+||||+||.|++.|.||++||++||+|+|.|++||||
T Consensus 20 ~~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPN 99 (216)
T 2pwq_A 20 QGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPN 99 (216)
T ss_dssp CSCHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-CCCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccC
Q 032716 81 IY-ADGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSI 124 (135)
Q Consensus 81 V~-~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~ 124 (135)
|+ .+|.||+++|.++|+|+++|.+||.+|++||.+|+++++++.
T Consensus 100 I~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~ 144 (216)
T 2pwq_A 100 ISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDA 144 (216)
T ss_dssp BCTTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCH
T ss_pred CcCCCCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCcccH
Confidence 99 699999999999999999999999999999999999998764
No 28
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=1.8e-42 Score=253.73 Aligned_cols=123 Identities=37% Similarity=0.719 Sum_probs=118.3
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCCcc
Q 032716 3 TPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY 82 (135)
Q Consensus 3 ~~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~ 82 (135)
+.+.+||++|+++|+++++.|+++.+.++|+++|+++|.||+||||+||.|++.|.||++||++||+|+|+|++|||||+
T Consensus 47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~ 126 (194)
T 3bzh_A 47 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNIN 126 (194)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceEC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCC
Q 032716 83 ADGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIG 125 (135)
Q Consensus 83 ~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~ 125 (135)
.+|.||+++|.++|+|+++|.+||.+|++||.+|+++++++..
T Consensus 127 ~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~ 169 (194)
T 3bzh_A 127 SQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGS 169 (194)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHH
T ss_pred CCCceechhhhccCCCcCcHHHHHHHHHHHHhCCCCccchhHH
Confidence 9999999999999999999999999999999999999887643
No 29
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=5.2e-43 Score=243.80 Aligned_cols=113 Identities=35% Similarity=0.701 Sum_probs=107.6
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEE--ecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCc-
Q 032716 1 MSTPAKKRLMRDFKRLQQDPPAGISGA--PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF- 77 (135)
Q Consensus 1 Ms~~a~~Rl~kEl~~l~~~~~~~i~~~--~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~- 77 (135)
||+.+ +||+||++++++++++|+++. +.++|+++|+++|.||+|||||||.|+++|.||++||++||+|+|.|++|
T Consensus 20 Ms~~~-~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~ 98 (136)
T 2a7l_A 20 MASMQ-KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIP 98 (136)
T ss_dssp GTTSC-HHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCC
T ss_pred ccHHH-HHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcC
Confidence 66644 999999999999999999965 78899999999999999999999999999999999999999999999999
Q ss_pred -cCCccCCCcEEccCCCCCCCCcCCHHHHHHHHHHhhc
Q 032716 78 -HPNIYADGSICLDILQNQWSPIYDVAAILTSIQVKLR 114 (135)
Q Consensus 78 -HpnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~ 114 (135)
||||+.+|+||+++|+++|+|++++++||.+|++||+
T Consensus 99 ~HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~slL~ 136 (136)
T 2a7l_A 99 VHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 136 (136)
T ss_dssp CBTTBCTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred CCccCCCCCeEEchhcCCCCCCCCcHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999984
No 30
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=2.8e-42 Score=244.81 Aligned_cols=123 Identities=29% Similarity=0.712 Sum_probs=115.8
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCeEE-EecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCC
Q 032716 2 STPAKKRLMRDFKRLQQDPPAGISG-APQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (135)
Q Consensus 2 s~~a~~Rl~kEl~~l~~~~~~~i~~-~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (135)
|..+.+||++|+++++++++.|+++ .+.++|+++|+++|. |+||||+||.|++.|.||++||++||+|+|.|++||||
T Consensus 2 ~m~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 80 (155)
T 1wzv_A 2 SHMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPN 80 (155)
T ss_dssp ---CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred cchHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCc
Confidence 3357899999999999999999999 788999999999999 99999999999999999999999999999999999999
Q ss_pred ccCCCcEEccCC-CCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCC
Q 032716 81 IYADGSICLDIL-QNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIG 125 (135)
Q Consensus 81 V~~~G~icl~~l-~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~ 125 (135)
|+.+|.||+++| .++|+|+++|.+||.+|++||.+|+++++++..
T Consensus 81 V~~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~ 126 (155)
T 1wzv_A 81 VDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMD 126 (155)
T ss_dssp BCTTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHH
T ss_pred CCCCCeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHH
Confidence 999999999999 899999999999999999999999999887654
No 31
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=2.8e-42 Score=252.42 Aligned_cols=122 Identities=35% Similarity=0.692 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHhhCCC-------------CCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeE
Q 032716 4 PAKKRLMRDFKRLQQDPP-------------AGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTV 70 (135)
Q Consensus 4 ~a~~Rl~kEl~~l~~~~~-------------~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v 70 (135)
.+.+||++|+++|+++++ .|+++.+.++|+++|+++|.||+||||+||.|++.|.||++||++||+|
T Consensus 32 ~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V 111 (193)
T 2f4z_A 32 REQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKM 111 (193)
T ss_dssp CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEE
T ss_pred HHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeE
Confidence 477999999999999987 7999999999999999999999999999999999999999999999999
Q ss_pred EEeccCccCCcc-CCCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCC
Q 032716 71 RFVSRMFHPNIY-ADGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIG 125 (135)
Q Consensus 71 ~f~t~i~HpnV~-~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~ 125 (135)
+|+|++|||||+ .+|.||+++|.++|+|+++|++||.+|++||.+|+++++++..
T Consensus 112 ~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~ 167 (193)
T 2f4z_A 112 KFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAE 167 (193)
T ss_dssp EESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHH
T ss_pred EEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHHhCCCCCCcccHH
Confidence 999999999999 6999999999999999999999999999999999999987654
No 32
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=5.7e-42 Score=259.63 Aligned_cols=125 Identities=34% Similarity=0.634 Sum_probs=119.5
Q ss_pred CChHHHHHHHHHHHHHhhC---CCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCc
Q 032716 1 MSTPAKKRLMRDFKRLQQD---PPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF 77 (135)
Q Consensus 1 Ms~~a~~Rl~kEl~~l~~~---~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 77 (135)
||+.|.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|
T Consensus 54 Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~ 133 (253)
T 3e46_A 54 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 133 (253)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCc
Confidence 7888999999999999987 4679999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc-CCCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCC
Q 032716 78 HPNIY-ADGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIG 125 (135)
Q Consensus 78 HpnV~-~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~ 125 (135)
||||+ .+|.||+++|.++|+|+++|++||.+|++||.+|+++++++..
T Consensus 134 HPNV~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~e 182 (253)
T 3e46_A 134 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAV 182 (253)
T ss_dssp BTTBCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHH
T ss_pred cCCccCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCChhhHH
Confidence 99999 5999999999999999999999999999999999999987654
No 33
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=1.2e-41 Score=245.30 Aligned_cols=125 Identities=29% Similarity=0.650 Sum_probs=115.0
Q ss_pred CChHHHHHHHHHHHHHhh-C-C------CC---CeEEEe-cCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCC
Q 032716 1 MSTPAKKRLMRDFKRLQQ-D-P------PA---GISGAP-QDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPP 68 (135)
Q Consensus 1 Ms~~a~~Rl~kEl~~l~~-~-~------~~---~i~~~~-~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP 68 (135)
||+.+.+||++|++++++ + + +. ++.+.+ .++|+++|+++|.||++|||+||.|+++|.||++||++||
T Consensus 3 Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP 82 (172)
T 2y9m_A 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPP 82 (172)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred CcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCC
Confidence 888899999999999998 5 3 33 466777 7889999999999999999999999999999999999999
Q ss_pred eEEEec-cCccCCcc-CCCcEEccCCC-CCCCCcCCHHHHHHHHHHhhcCCCCCCcccCC
Q 032716 69 TVRFVS-RMFHPNIY-ADGSICLDILQ-NQWSPIYDVAAILTSIQVKLRFDFSCSFLSIG 125 (135)
Q Consensus 69 ~v~f~t-~i~HpnV~-~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~ 125 (135)
+|+|.| ++|||||+ .+|.||+++|. ++|+|+++|++||.+|++||.+|+++++++..
T Consensus 83 ~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~ 142 (172)
T 2y9m_A 83 KISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVD 142 (172)
T ss_dssp EEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHH
T ss_pred EEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHH
Confidence 999999 99999996 89999999998 89999999999999999999999999987643
No 34
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=2.7e-41 Score=240.74 Aligned_cols=125 Identities=20% Similarity=0.424 Sum_probs=113.7
Q ss_pred ChHHHHHHHHHHHHHhhCCCCC-eEEEe-cCCC--CceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCc
Q 032716 2 STPAKKRLMRDFKRLQQDPPAG-ISGAP-QDNN--IMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF 77 (135)
Q Consensus 2 s~~a~~Rl~kEl~~l~~~~~~~-i~~~~-~~~~--~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 77 (135)
..++.+||+||++++++++++| +++.+ .++| +++|+++|.||++||||||.|+++|.||++||++||+|+|+|++|
T Consensus 23 ~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~ 102 (160)
T 2a4d_A 23 KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKIN 102 (160)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred echHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCce
Confidence 3578899999999999999888 77776 4554 899999999999999999999999999999999999999999999
Q ss_pred cCCcc-CCCcEEccCCC--CCCCCcCCHHHHHHHHHHhhc-CCCCCCcccCCc
Q 032716 78 HPNIY-ADGSICLDILQ--NQWSPIYDVAAILTSIQVKLR-FDFSCSFLSIGK 126 (135)
Q Consensus 78 HpnV~-~~G~icl~~l~--~~W~p~~~i~~il~~i~~ll~-~~~~~~~~~~~~ 126 (135)
||||+ .+|+||+++|. ++|+|+++|++||.+|++||. .|+..++.+.+.
T Consensus 103 HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~ea 155 (160)
T 2a4d_A 103 MNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 155 (160)
T ss_dssp CTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTT
T ss_pred eCCEECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhh
Confidence 99999 79999999998 899999999999999999995 578887765543
No 35
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.6e-41 Score=242.10 Aligned_cols=120 Identities=25% Similarity=0.566 Sum_probs=113.4
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEE-ecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCCc
Q 032716 3 TPAKKRLMRDFKRLQQDPPAGISGA-PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI 81 (135)
Q Consensus 3 ~~a~~Rl~kEl~~l~~~~~~~i~~~-~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV 81 (135)
+.+.+||++|++++ ++++|+++. +.++|+++|+++| ||++|||+||.|++.|.||++||++||+|+|.|++|||||
T Consensus 5 ~~~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 81 (160)
T 1y8x_A 5 SAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNI 81 (160)
T ss_dssp CHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred cHHHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcC
Confidence 45889999999999 467899998 7889999999988 9999999999999999999999999999999999999999
Q ss_pred cCCCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCC
Q 032716 82 YADGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIG 125 (135)
Q Consensus 82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~ 125 (135)
+.+|.||+++|.++|+|++++++||.+|++||.+|+++++++..
T Consensus 82 ~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~ 125 (160)
T 1y8x_A 82 DLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKE 125 (160)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHH
T ss_pred CCCCeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCCCccCHH
Confidence 99999999999999999999999999999999999999987654
No 36
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=2.3e-41 Score=240.33 Aligned_cols=127 Identities=24% Similarity=0.475 Sum_probs=117.2
Q ss_pred hHHHHHHHHHHHHHhhC-CCCCeEEEecC-C--CCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCcc
Q 032716 3 TPAKKRLMRDFKRLQQD-PPAGISGAPQD-N--NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFH 78 (135)
Q Consensus 3 ~~a~~Rl~kEl~~l~~~-~~~~i~~~~~~-~--~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 78 (135)
..+.+||++|+++++++ ++.|+++.+.+ + |+++|+++|.||++|||+||.|+++|.||++||++||+|+|+|++||
T Consensus 20 ~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~H 99 (156)
T 2q0v_A 20 VPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEM 99 (156)
T ss_dssp CCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred chHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEccccc
Confidence 46789999999999998 78899998843 3 59999999999999999999999999999999999999999999999
Q ss_pred CCccCCCcE---EccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCCcceEE
Q 032716 79 PNIYADGSI---CLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIGKRFCF 130 (135)
Q Consensus 79 pnV~~~G~i---cl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~~~~~~ 130 (135)
|||+.+|+| |+++|. +|+|+++|++||.+|++||.+|++.++++....-.|
T Consensus 100 PNV~~~G~icisCL~iL~-~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y 153 (156)
T 2q0v_A 100 SCVDNCGRVIKNNLHILK-NWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVY 153 (156)
T ss_dssp TTBCTTSBBCGGGSHHHH-TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC
T ss_pred CCCccCCeEehhhccccc-CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHh
Confidence 999999999 888887 599999999999999999999999999988776554
No 37
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=6.2e-42 Score=238.94 Aligned_cols=126 Identities=21% Similarity=0.500 Sum_probs=112.4
Q ss_pred CCh-HHHHHHHHHHHHHhhC-CCCCeEEEecC-C--CCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecc
Q 032716 1 MST-PAKKRLMRDFKRLQQD-PPAGISGAPQD-N--NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (135)
Q Consensus 1 Ms~-~a~~Rl~kEl~~l~~~-~~~~i~~~~~~-~--~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 75 (135)
||. ++.+||+||+++++++ ++.|+++.+.+ + |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 2 m~~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 81 (138)
T 1jat_B 2 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISK 81 (138)
T ss_dssp -CCCCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred cchHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcc
Confidence 664 6779999999999998 78899998843 3 48999999999999999999999999999999999999999999
Q ss_pred CccCCccCC-CcE--EccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCCcc
Q 032716 76 MFHPNIYAD-GSI--CLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIGKR 127 (135)
Q Consensus 76 i~HpnV~~~-G~i--cl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~~~ 127 (135)
+|||||+.+ |.| |++++. +|+|++++++||.+|++||.+|+++++++..+.
T Consensus 82 i~HPnv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~ 135 (138)
T 1jat_B 82 INLPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMATPANKKLRQPKEG 135 (138)
T ss_dssp CCCTTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTT
T ss_pred cccCCEeCCCCEEeeecccCC-CCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchh
Confidence 999999975 999 899886 899999999999999999999999998887654
No 38
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=3.2e-42 Score=255.71 Aligned_cols=122 Identities=33% Similarity=0.658 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCC-CceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCCcc
Q 032716 4 PAKKRLMRDFKRLQQDPPAGISGAPQDNN-IMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY 82 (135)
Q Consensus 4 ~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~-~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~ 82 (135)
.+.+||++|++++++++++|+++.+.++| +++|+++|.||+||||+||.|++.|.||++||++||+|+|.|++|||||+
T Consensus 2 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~ 81 (215)
T 1tte_A 2 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 81 (215)
T ss_dssp TTHHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSC
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCc
Confidence 36899999999999999999999997764 56999999999999999999999999999999999999999999999999
Q ss_pred C-CCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCC
Q 032716 83 A-DGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIG 125 (135)
Q Consensus 83 ~-~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~ 125 (135)
. +|.||+++|.++|+|+++|.+||.+|++||.+|++.++.+..
T Consensus 82 ~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~e 125 (215)
T 1tte_A 82 SVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAE 125 (215)
T ss_dssp SSSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHH
T ss_pred CCCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHH
Confidence 7 999999999999999999999999999999999999887643
No 39
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.9e-41 Score=244.79 Aligned_cols=121 Identities=24% Similarity=0.534 Sum_probs=114.4
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCeEEE-ecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCC
Q 032716 2 STPAKKRLMRDFKRLQQDPPAGISGA-PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (135)
Q Consensus 2 s~~a~~Rl~kEl~~l~~~~~~~i~~~-~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (135)
++.+.+||++|++++ ++++|+++. +.++|+++|+++| ||++|||+||.|++.|.||++||++||+|+|.|++||||
T Consensus 24 ~~~~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPN 100 (180)
T 2nvu_C 24 ASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPN 100 (180)
T ss_dssp CCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred ccHHHHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCC
Confidence 456889999999999 567899998 7889999999998 999999999999999999999999999999999999999
Q ss_pred ccCCCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCC
Q 032716 81 IYADGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIG 125 (135)
Q Consensus 81 V~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~ 125 (135)
|+.+|.||+++|.++|+|+++|++||.+|++||.+|+++++++..
T Consensus 101 V~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~ 145 (180)
T 2nvu_C 101 IDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKE 145 (180)
T ss_dssp BCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHH
T ss_pred CCCCCcEEcccccccCCCCCCHHHHHHHHHHHHhCCCCCCccCHH
Confidence 999999999999999999999999999999999999999987654
No 40
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=1e-40 Score=239.35 Aligned_cols=123 Identities=22% Similarity=0.462 Sum_probs=114.7
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEEe-cCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCCc
Q 032716 3 TPAKKRLMRDFKRLQQDPPAGISGAP-QDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI 81 (135)
Q Consensus 3 ~~a~~Rl~kEl~~l~~~~~~~i~~~~-~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV 81 (135)
+.+.+||++|+++++++++.|+++.+ .++|+.+|+++| ||++|||+||.|++.|.||++||++||+|+|.|++|||||
T Consensus 13 s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 91 (167)
T 3fn1_B 13 SVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNI 91 (167)
T ss_dssp CHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCC
Confidence 46889999999999999999999985 567899999998 8999999999999999999999999999999999999999
Q ss_pred cCCCcEEccCCCC------CCCCcCCHHHHHHHHHHhhcC-CCCCCcccCCc
Q 032716 82 YADGSICLDILQN------QWSPIYDVAAILTSIQVKLRF-DFSCSFLSIGK 126 (135)
Q Consensus 82 ~~~G~icl~~l~~------~W~p~~~i~~il~~i~~ll~~-~~~~~~~~~~~ 126 (135)
+.+|.||+++|.. +|+|+++|.+||.+|++||.+ |+++++++...
T Consensus 92 ~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~ea 143 (167)
T 3fn1_B 92 TETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEA 143 (167)
T ss_dssp CTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHH
T ss_pred CCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHH
Confidence 9999999999975 799999999999999999999 69888876543
No 41
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=3.8e-41 Score=238.78 Aligned_cols=120 Identities=26% Similarity=0.669 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEe-cCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCCccC
Q 032716 5 AKKRLMRDFKRLQQDPPAGISGAP-QDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA 83 (135)
Q Consensus 5 a~~Rl~kEl~~l~~~~~~~i~~~~-~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~ 83 (135)
|.+||++|++++++++++|+++.+ .++|+++|+++|. |+||||+||.|++.|.||++||++||+|+|.|++|||||+.
T Consensus 3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 81 (154)
T 1c4z_D 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE 81 (154)
T ss_dssp -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCC
Confidence 679999999999999999998654 6789999999998 99999999999999999999999999999999999999999
Q ss_pred CCcEEccCCC-CCCCCcCCHHHHHHHHHHhhcCCCCCCcccCC
Q 032716 84 DGSICLDILQ-NQWSPIYDVAAILTSIQVKLRFDFSCSFLSIG 125 (135)
Q Consensus 84 ~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~ 125 (135)
+|.||+++|. ++|+|++++.+||.+|++||.+|+++++++..
T Consensus 82 ~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~ 124 (154)
T 1c4z_D 82 KGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRAD 124 (154)
T ss_dssp TCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHH
T ss_pred CCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHH
Confidence 9999999996 89999999999999999999999999887643
No 42
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=1.5e-40 Score=239.06 Aligned_cols=123 Identities=20% Similarity=0.435 Sum_probs=112.1
Q ss_pred hHHHHHHHHHHHHHhhCCCCC-eEEEe-cCCC--CceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCcc
Q 032716 3 TPAKKRLMRDFKRLQQDPPAG-ISGAP-QDNN--IMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFH 78 (135)
Q Consensus 3 ~~a~~Rl~kEl~~l~~~~~~~-i~~~~-~~~~--~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 78 (135)
.++.+||++|++++++++++| +++.+ .++| +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus 34 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~H 113 (170)
T 2hlw_A 34 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM 113 (170)
T ss_dssp CCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCC
T ss_pred CHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEeccccc
Confidence 357899999999999999888 67776 4554 8999999999999999999999999999999999999999999999
Q ss_pred CCcc-CCCcEEccCCC--CCCCCcCCHHHHHHHHHHhhcC-CCCCCcccCC
Q 032716 79 PNIY-ADGSICLDILQ--NQWSPIYDVAAILTSIQVKLRF-DFSCSFLSIG 125 (135)
Q Consensus 79 pnV~-~~G~icl~~l~--~~W~p~~~i~~il~~i~~ll~~-~~~~~~~~~~ 125 (135)
|||+ .+|.||+++|. ++|+|+++|++||.+|++||.+ |+..++.+.+
T Consensus 114 PNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~e 164 (170)
T 2hlw_A 114 NGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPE 164 (170)
T ss_dssp SSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSS
T ss_pred CCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCCCCcc
Confidence 9999 89999999998 8999999999999999999975 7777766544
No 43
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=2.5e-41 Score=239.31 Aligned_cols=120 Identities=25% Similarity=0.621 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCCcc-
Q 032716 4 PAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY- 82 (135)
Q Consensus 4 ~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~- 82 (135)
+|.+||+||++++++. |+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+
T Consensus 2 sa~~Rl~kEl~~l~~~---~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~ 78 (152)
T 2onu_A 2 TSLTRKQCDFTKLIMA---GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDE 78 (152)
T ss_dssp -CCCHHHHTHHHHHHH---TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred hHHHHHHHHHHhcCcC---CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcC
Confidence 3679999999999874 788888899999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEccCCCCCCCCcCCHHHHHHH-HHHhhcCCCCCCcccCCc
Q 032716 83 ADGSICLDILQNQWSPIYDVAAILTS-IQVKLRFDFSCSFLSIGK 126 (135)
Q Consensus 83 ~~G~icl~~l~~~W~p~~~i~~il~~-i~~ll~~~~~~~~~~~~~ 126 (135)
.+|.||+++|.++|+|++++.+||.+ |++||.+|+++++++...
T Consensus 79 ~~G~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~a 123 (152)
T 2onu_A 79 ASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDA 123 (152)
T ss_dssp TTCBBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHH
T ss_pred cCCeEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHH
Confidence 59999999999999999999999999 689999999999887543
No 44
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.3e-41 Score=242.31 Aligned_cols=122 Identities=29% Similarity=0.658 Sum_probs=111.5
Q ss_pred CCh--HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCcc
Q 032716 1 MST--PAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFH 78 (135)
Q Consensus 1 Ms~--~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 78 (135)
||+ .+.+||++|++++++ +|+++.+. +|+++|+++|.||++|||+||.|++.|.||++||++||+|+|+|++||
T Consensus 20 ms~~~~a~~RL~kEl~~l~~---~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~H 95 (179)
T 2z5d_A 20 MSSPSPGKRRMDTDVIKLIE---SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFH 95 (179)
T ss_dssp ---CCHHHHHHHHHHHHHHH---SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCB
T ss_pred CCCchHHHHHHHHHHHhcCc---CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCcc
Confidence 554 478999999999985 47888876 678999999999999999999999999999999999999999999999
Q ss_pred CCccC-CCcEEccCCCCCCCCcCCHHHHHHH-HHHhhcCCCCCCcccCCc
Q 032716 79 PNIYA-DGSICLDILQNQWSPIYDVAAILTS-IQVKLRFDFSCSFLSIGK 126 (135)
Q Consensus 79 pnV~~-~G~icl~~l~~~W~p~~~i~~il~~-i~~ll~~~~~~~~~~~~~ 126 (135)
|||+. +|.||+++|.++|+|+++|++||.+ |++||.+|+++++++...
T Consensus 96 PNV~~~~G~ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~ea 145 (179)
T 2z5d_A 96 PNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDA 145 (179)
T ss_dssp TTBCTTTCBBCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHH
T ss_pred CcCCCCCCeEeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHH
Confidence 99997 9999999999999999999999999 999999999999877543
No 45
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=1.3e-40 Score=238.94 Aligned_cols=125 Identities=24% Similarity=0.522 Sum_probs=115.3
Q ss_pred CChHHHHHHHHHHHHHhhCC------------CCCeEEEecCCCCceeEEEEeCCCCCCCC--CCEEEEEEEcCCCCCCC
Q 032716 1 MSTPAKKRLMRDFKRLQQDP------------PAGISGAPQDNNIMLWNAVIFGPDDTPWD--GGTFKLTLQFTEDYPNK 66 (135)
Q Consensus 1 Ms~~a~~Rl~kEl~~l~~~~------------~~~i~~~~~~~~~~~w~~~i~gp~~tpy~--gg~f~~~i~fp~~YP~~ 66 (135)
||+.+.+||++|++++++++ ..++.+.+.++|+++|+++|.||+||||+ ||.|++.|.||++||++
T Consensus 5 Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~ 84 (167)
T 4ds2_A 5 MKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHE 84 (167)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTS
T ss_pred ccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCC
Confidence 88889999999999999987 67899999999999999999999999999 99999999999999999
Q ss_pred CCeEEEeccCccCCccCCCcEEccCCCCCCCCcCCHHHHHH-HHHHhhcC--CCCCCcccCC
Q 032716 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILT-SIQVKLRF--DFSCSFLSIG 125 (135)
Q Consensus 67 pP~v~f~t~i~HpnV~~~G~icl~~l~~~W~p~~~i~~il~-~i~~ll~~--~~~~~~~~~~ 125 (135)
||+|+|.|++|||||+.+|.||+++|.++|+|+++++++|+ .|++|+.. |+++++++..
T Consensus 85 pP~v~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~e 146 (167)
T 4ds2_A 85 PPTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPE 146 (167)
T ss_dssp CCEEEESSCCCCSSCCTTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHH
T ss_pred CCEEEEeCCcccccCCCCCEEEcccCcCCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHH
Confidence 99999999999999999999999999999999999999754 57777775 6777776644
No 46
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=8.1e-40 Score=261.95 Aligned_cols=123 Identities=42% Similarity=0.779 Sum_probs=119.2
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCCcc
Q 032716 3 TPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY 82 (135)
Q Consensus 3 ~~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~ 82 (135)
+.|.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+
T Consensus 2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 81 (399)
T 4ddg_A 2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 81 (399)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCC
Q 032716 83 ADGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIG 125 (135)
Q Consensus 83 ~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~ 125 (135)
.+|.||+++|.++|+|++++++||.+|++||.+|+++++++..
T Consensus 82 ~~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~ 124 (399)
T 4ddg_A 82 SNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 124 (399)
T ss_dssp TTCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHH
T ss_pred CCCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCCchhhHH
Confidence 9999999999999999999999999999999999999987653
No 47
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=9.8e-40 Score=238.57 Aligned_cols=120 Identities=30% Similarity=0.587 Sum_probs=113.7
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEE----ecCCCCc---eeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecc
Q 032716 3 TPAKKRLMRDFKRLQQDPPAGISGA----PQDNNIM---LWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (135)
Q Consensus 3 ~~a~~Rl~kEl~~l~~~~~~~i~~~----~~~~~~~---~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 75 (135)
+.|.+||++|+++++ +++|+++. +.++|++ +|+++|. |++|||+||.|++.|.||++||++||+|+|.|+
T Consensus 28 s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 104 (190)
T 3o2u_A 28 SAARIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKK 104 (190)
T ss_dssp CHHHHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECSC
T ss_pred cHHHHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEecC
Confidence 568999999999998 67799998 7889999 9999997 788999999999999999999999999999999
Q ss_pred CccCCccCCCcEEccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccCC
Q 032716 76 MFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQVKLRFDFSCSFLSIG 125 (135)
Q Consensus 76 i~HpnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~~~~~~~~~~~ 125 (135)
+|||||+.+|.||+++|.++|+|+++|++||.+|+++|.+|+++++++..
T Consensus 105 i~HPnV~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~ 154 (190)
T 3o2u_A 105 IFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKD 154 (190)
T ss_dssp CCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHH
T ss_pred cccCCCCCCCeEechhccCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHH
Confidence 99999999999999999999999999999999999999999999988754
No 48
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=5.2e-40 Score=236.50 Aligned_cols=118 Identities=29% Similarity=0.648 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCCcc-
Q 032716 4 PAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY- 82 (135)
Q Consensus 4 ~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~- 82 (135)
.+.+||++|++++++++. ++ ..++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+
T Consensus 12 ~~~~RL~~El~~l~~~~~-~v---~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~ 87 (171)
T 1yf9_A 12 RSNRRREMDYMRLCNSTR-KV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDE 87 (171)
T ss_dssp -CCHHHHHHHHHHHSSSS-CE---EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred cHHHHHHHHHHHHHhCCC-CC---CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcc
Confidence 567999999999999874 43 3578999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEccCCCCCCCCcCCHHHHHHHH-HHhhcCCCCCCcccCC
Q 032716 83 ADGSICLDILQNQWSPIYDVAAILTSI-QVKLRFDFSCSFLSIG 125 (135)
Q Consensus 83 ~~G~icl~~l~~~W~p~~~i~~il~~i-~~ll~~~~~~~~~~~~ 125 (135)
.+|.||+++|.++|+|+++|++||.+| ++||.+|+++++++..
T Consensus 88 ~~G~iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~ 131 (171)
T 1yf9_A 88 RSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQ 131 (171)
T ss_dssp TTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHH
T ss_pred cCCeEeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHH
Confidence 599999999999999999999999997 7999999999987654
No 49
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=100.00 E-value=5e-40 Score=239.37 Aligned_cols=123 Identities=20% Similarity=0.441 Sum_probs=115.4
Q ss_pred CChHHHHHHHHHHHHHhhCC---CCCeEEEecCCCCceeEEEEeCC-CCCCCCC-----------CEEEEEEEcCCCCCC
Q 032716 1 MSTPAKKRLMRDFKRLQQDP---PAGISGAPQDNNIMLWNAVIFGP-DDTPWDG-----------GTFKLTLQFTEDYPN 65 (135)
Q Consensus 1 Ms~~a~~Rl~kEl~~l~~~~---~~~i~~~~~~~~~~~w~~~i~gp-~~tpy~g-----------g~f~~~i~fp~~YP~ 65 (135)
||..+.+||++|+++|++++ +.++++.+.++|+++|+++|.|| ++|||+| |.|+++|.||++||+
T Consensus 24 ~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~ 103 (186)
T 1zuo_A 24 GSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPF 103 (186)
T ss_dssp CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTS
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCC
Confidence 77889999999999999998 67899999999999999999997 8999998 899999999999999
Q ss_pred CCCeEEEeccCccC-CccCCCcEEccCCC-CCCCCcCCHHHHHHHHHHhhcCCCCCCccc
Q 032716 66 KPPTVRFVSRMFHP-NIYADGSICLDILQ-NQWSPIYDVAAILTSIQVKLRFDFSCSFLS 123 (135)
Q Consensus 66 ~pP~v~f~t~i~Hp-nV~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~~~~~~~~~ 123 (135)
+||+|+|.|++||| ||+.+|.||+++|. ++|+|+++|++||.+|++||.+|++.....
T Consensus 104 ~PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~a~~~~~ 163 (186)
T 1zuo_A 104 DPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFG 163 (186)
T ss_dssp SCCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEECTT
T ss_pred CCCeEEEeCCccCCCccCCCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCCChhHhhc
Confidence 99999999999999 69999999999997 789999999999999999999998765443
No 50
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-38 Score=232.11 Aligned_cols=117 Identities=30% Similarity=0.614 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCCcc
Q 032716 3 TPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY 82 (135)
Q Consensus 3 ~~a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~ 82 (135)
+.+.+||++|+++|++++++|+++.+.++|+++|+++|.||+||||+||.|++.|.||++||++||+|+|.|+ |||++
T Consensus 13 ~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~~~ 90 (187)
T 2f4w_A 13 TTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFK 90 (187)
T ss_dssp -CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSSBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cceec
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred CCCcEEccCC---CCCCCCcCCHHHHHHHHHHhhcCCCCCCc
Q 032716 83 ADGSICLDIL---QNQWSPIYDVAAILTSIQVKLRFDFSCSF 121 (135)
Q Consensus 83 ~~G~icl~~l---~~~W~p~~~i~~il~~i~~ll~~~~~~~~ 121 (135)
.+|+||+++| .++|+|+++|.+||.+|++||.+|++...
T Consensus 91 ~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~~g 132 (187)
T 2f4w_A 91 CNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLG 132 (187)
T ss_dssp TTSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCTT
T ss_pred cCCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCCCc
Confidence 9999999999 68999999999999999999999998743
No 51
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=242.50 Aligned_cols=124 Identities=28% Similarity=0.554 Sum_probs=113.2
Q ss_pred CChHHHHHHHHHHHHHhhCCCC----CeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecc-
Q 032716 1 MSTPAKKRLMRDFKRLQQDPPA----GISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR- 75 (135)
Q Consensus 1 Ms~~a~~Rl~kEl~~l~~~~~~----~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~- 75 (135)
||+.+.+||++|+++|++++++ ++.+.+.++|++.|+++|.||+||||+||.|++.|.||++||++||+|+|.|+
T Consensus 73 ~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~ 152 (323)
T 3ceg_A 73 NSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTG 152 (323)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCST
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccC
Confidence 6778999999999999998876 45677889999999999999999999999999999999999999999999998
Q ss_pred ----CccCCccCCCcEEccCCC-------CCCCCcC-CHHHHHHHHHHhhc--CCCCCCcccC
Q 032716 76 ----MFHPNIYADGSICLDILQ-------NQWSPIY-DVAAILTSIQVKLR--FDFSCSFLSI 124 (135)
Q Consensus 76 ----i~HpnV~~~G~icl~~l~-------~~W~p~~-~i~~il~~i~~ll~--~~~~~~~~~~ 124 (135)
+|||||+.+|.||+++|. ++|+|++ +|.+||.+|++||. +|++++++..
T Consensus 153 g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~ 215 (323)
T 3ceg_A 153 GHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYE 215 (323)
T ss_dssp TTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGG
T ss_pred CCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCH
Confidence 999999999999999997 6899999 89999999999996 5555666544
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.96 E-value=4.7e-31 Score=186.76 Aligned_cols=95 Identities=20% Similarity=0.389 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCC----------EEEEEEEcCCCCCCCCCeEEEecc
Q 032716 6 KKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGG----------TFKLTLQFTEDYPNKPPTVRFVSR 75 (135)
Q Consensus 6 ~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~f~t~ 75 (135)
.+||++|+++|++ ++.+.++|+.+|++.+.||+||+|+|| .|++++.||++||.+||+|+|.+.
T Consensus 34 ~~RL~eE~k~L~k------~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~ 107 (172)
T 2z6o_A 34 VQRLKEEYQSLIR------YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPEL 107 (172)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGG
T ss_pred HHHHHHHHHHHHH------HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCC
Confidence 8999999999998 467788899999999999999999999 999999999999999999999998
Q ss_pred -CccCCccCCCcEEccCC-CC---CCCCcCCHHHHH
Q 032716 76 -MFHPNIYADGSICLDIL-QN---QWSPIYDVAAIL 106 (135)
Q Consensus 76 -i~HpnV~~~G~icl~~l-~~---~W~p~~~i~~il 106 (135)
+|||||+.+|+|||++| ++ .|+|+++|.++|
T Consensus 108 ~~~hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL 143 (172)
T 2z6o_A 108 DGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLM 143 (172)
T ss_dssp TTTCSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHH
T ss_pred CCCCCCCCCCCcEechhhccccccccCCccCHHHHH
Confidence 99999999999999999 43 456999999997
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.84 E-value=9.5e-21 Score=134.57 Aligned_cols=114 Identities=18% Similarity=0.240 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhhCCCC---CeEEEecCCCCceeEEEEeCCCCCCCCCCE---EEEEEEcCCCCCCCCCeEEEec-----
Q 032716 6 KKRLMRDFKRLQQDPPA---GISGAPQDNNIMLWNAVIFGPDDTPWDGGT---FKLTLQFTEDYPNKPPTVRFVS----- 74 (135)
Q Consensus 6 ~~Rl~kEl~~l~~~~~~---~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~---f~~~i~fp~~YP~~pP~v~f~t----- 74 (135)
.+|..+|+.++.+.-+. ...+...+|...++-+.+.|.-.++|+|+. |.+.|-||.+||++||.|.|.+
T Consensus 30 ~~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m 109 (162)
T 3r3q_A 30 GRTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDM 109 (162)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCT
T ss_pred hhHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCccc
Confidence 36677788876543221 233345667777888888888889999998 8899999999999999998865
Q ss_pred --c---Cc-cCCccCCCcEEccCCCCCCCC-cCCHHHHHHHHHHhhcCCCCCC
Q 032716 75 --R---MF-HPNIYADGSICLDILQNQWSP-IYDVAAILTSIQVKLRFDFSCS 120 (135)
Q Consensus 75 --~---i~-HpnV~~~G~icl~~l~~~W~p-~~~i~~il~~i~~ll~~~~~~~ 120 (135)
+ ++ |||||.+|+||+++|. +|+| +.++.++|.+|+++|.+|+++.
T Consensus 110 ~~~~~~I~~hpnVD~~G~I~lpyL~-~W~p~~s~L~~ll~~l~~lf~ep~~d~ 161 (162)
T 3r3q_A 110 NTISSSLPIQEYIDSNGWIALPILH-AWDPAAMNLIMVVQELMSLLHEPPQDQ 161 (162)
T ss_dssp TTSCTTSTHHHHBCTTSBBCCGGGG-SCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred cccccccCCCCCCCCCCcEeCcccc-cCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 1 77 9999999999999995 6999 6799999999999999999874
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.82 E-value=5.7e-22 Score=137.64 Aligned_cols=96 Identities=21% Similarity=0.471 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCC----------EEEEEEEcCCCCCCCCCeEEEec
Q 032716 5 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGG----------TFKLTLQFTEDYPNKPPTVRFVS 74 (135)
Q Consensus 5 a~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~f~t 74 (135)
-..||.+||+.|.+ +++.++++-.+|+....|++||+|+|+ .|++++.||.+||.+||.|+|.+
T Consensus 35 w~~RlkeEy~alI~------yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~ 108 (168)
T 3kpa_A 35 WTARLKEEYASLIT------YVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPE 108 (168)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGG
T ss_pred HHHHHHHHHHHHHH------HHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeeccc
Confidence 56899999999974 566666677789999999999999999 89999999999999999999999
Q ss_pred c-CccCCccCCCcEEccCCC-CCC---CCcCCHHHHH
Q 032716 75 R-MFHPNIYADGSICLDILQ-NQW---SPIYDVAAIL 106 (135)
Q Consensus 75 ~-i~HpnV~~~G~icl~~l~-~~W---~p~~~i~~il 106 (135)
. .+|||++.+|+|||+++- ..| .|.++|...|
T Consensus 109 ldgkt~kmYr~GkICLdIhwkPlW~~n~P~fGiahal 145 (168)
T 3kpa_A 109 LEGKTVKMYRGGKICMTTHFFPLWARNVPYFGISHVL 145 (168)
T ss_dssp GTTTCSSEETTTEECCCTTHHHHHHHTTTTCCHHHHH
T ss_pred ccCcCccccCCCcEEeccccchhhHhcCCchhHHHHH
Confidence 5 899999999999999971 112 4556666654
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.60 E-value=1.4e-15 Score=106.31 Aligned_cols=85 Identities=24% Similarity=0.454 Sum_probs=74.1
Q ss_pred cCCCCceeEEEEeCCCCCCCCCCEEE--EEEEcCCCCCCCCCeEEEecc------CccCCccCCCcEEccCCCCCCCC-c
Q 032716 29 QDNNIMLWNAVIFGPDDTPWDGGTFK--LTLQFTEDYPNKPPTVRFVSR------MFHPNIYADGSICLDILQNQWSP-I 99 (135)
Q Consensus 29 ~~~~~~~w~~~i~gp~~tpy~gg~f~--~~i~fp~~YP~~pP~v~f~t~------i~HpnV~~~G~icl~~l~~~W~p-~ 99 (135)
...+++.|..+|. .+|+|++|. +.|-||.+||++||.| |.++ ..|||||.+|+||++.|.+ |++ .
T Consensus 49 ~~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~~-W~~~~ 122 (146)
T 3obq_A 49 GSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLHE-WKHPQ 122 (146)
T ss_dssp TTCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHHHT-CCTTT
T ss_pred ChheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEecccccc-cCCCC
Confidence 3457889999986 579999998 4999999999999999 6665 5899999999999999965 988 7
Q ss_pred CCHHHHHHHHHHhhcCCCCC
Q 032716 100 YDVAAILTSIQVKLRFDFSC 119 (135)
Q Consensus 100 ~~i~~il~~i~~ll~~~~~~ 119 (135)
.++.+++..+++.|.++.|-
T Consensus 123 snL~~ll~~l~~~F~~epPv 142 (146)
T 3obq_A 123 SDLLGLIQVMIVVFGDEPPV 142 (146)
T ss_dssp CCHHHHHHHHHHHHHHSCSE
T ss_pred CCHHHHHHHHHHHHhhCCCC
Confidence 89999999999999887663
No 56
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=96.69 E-value=0.016 Score=41.46 Aligned_cols=84 Identities=17% Similarity=0.258 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccCCccCCCc
Q 032716 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGS 86 (135)
Q Consensus 7 ~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~ 86 (135)
++|.+|+.++-=+ .+.-.++++....+.+.... |....+.+.++.+||.+||.+...-|. |.
T Consensus 4 ~~li~Ei~~iGW~-----~l~~id~~~~~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~------ 65 (186)
T 3zqs_A 4 SSLIEEIGTLGWD-----KLVYADTCFSTIKLKAEDAS-----GREHLITLKLKAKYPAESPDYFVDFPV--PF------ 65 (186)
T ss_dssp CSHHHHHHHHCGG-----GEEEECTTSSEEEEEEECTT-----SCEEEEEEECCTTTTTSCCEEECCCSS--CC------
T ss_pred HHHHHHHHHhCCc-----eeeeecCCccEEEEEEEeCC-----CCeEEEEEEECCCCCCCCCeeEEcCCC--Cc------
Confidence 3678888887211 12334567888888887544 578899999999999999987666554 11
Q ss_pred EEccCCCCCCCCcCCHHHHHHHHHHhhc
Q 032716 87 ICLDILQNQWSPIYDVAAILTSIQVKLR 114 (135)
Q Consensus 87 icl~~l~~~W~p~~~i~~il~~i~~ll~ 114 (135)
.-.|+|..++.+++.+.+..|.
T Consensus 66 ------~~~w~~~ssL~~v~~qF~~~Le 87 (186)
T 3zqs_A 66 ------CASWTPQSSLISIYSQFLAAIE 87 (186)
T ss_dssp ------CCCCCTTCCHHHHHHHHHHHHH
T ss_pred ------ccccCCCccHHHHHHHHHHHHH
Confidence 1269999999999988887765
No 57
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.68 E-value=0.015 Score=38.64 Aligned_cols=67 Identities=13% Similarity=0.222 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEec
Q 032716 6 KKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVS 74 (135)
Q Consensus 6 ~~Rl~kEl~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 74 (135)
..+...|+..|..-=+..+.+. .+....+.+.+....+..-+.-.+.+.+.+|++||.+||.+.+.+
T Consensus 12 ~e~q~~EleaL~sIy~d~~~~~--~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 12 GEEQRNELEALESIYPDSFTVL--SENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp HHHHHHHHHHHHHHCSSSEEEC--CSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred HHHHHHHHHHHHHHccCceEEc--cCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 4566778888864333334332 222345555555322222234478899999999999999998876
No 58
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=96.01 E-value=0.075 Score=35.10 Aligned_cols=106 Identities=11% Similarity=0.039 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecC--CCCceeEEEEeCCCCCCC--CCCEEEEEEEcCCCCCCCCCeEEEeccCccCCcc
Q 032716 7 KRLMRDFKRLQQDPPAGISGAPQD--NNIMLWNAVIFGPDDTPW--DGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY 82 (135)
Q Consensus 7 ~Rl~kEl~~l~~~~~~~i~~~~~~--~~~~~w~~~i~gp~~tpy--~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~ 82 (135)
.+...|+..|+.-=+..+.+.... .....+.+.+..+.+..- ..-.+.+.+.+|++||..+|.|.+.+.. ++.
T Consensus 11 e~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~~---~L~ 87 (128)
T 2day_A 11 WVLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNPR---GLS 87 (128)
T ss_dssp CHHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEEE---SSC
T ss_pred HHHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcCC---CCC
Confidence 346678877764333344443221 123344455542222111 1247889999999999999999988732 221
Q ss_pred C-C-CcEEccCCCCCC--CCcC-CHHHHHHHHHHhhcCC
Q 032716 83 A-D-GSICLDILQNQW--SPIY-DVAAILTSIQVKLRFD 116 (135)
Q Consensus 83 ~-~-G~icl~~l~~~W--~p~~-~i~~il~~i~~ll~~~ 116 (135)
. . ..+| +.|.+.| ..+. -+.+++..++..|.+-
T Consensus 88 ~~~~~~L~-~~L~~~~~e~~G~~mif~lv~~lqe~l~~~ 125 (128)
T 2day_A 88 DEQIHTIL-QVLGHVAKAGLGTAMLYELIEKGKEILSGP 125 (128)
T ss_dssp HHHHHHHH-HHHHHHHHHTTTSCCHHHHHHHHHHHHCCC
T ss_pred HHHHHHHH-HHHHHHHHHhCCCEEhHHHHHHHHHHHHhc
Confidence 1 0 0111 1222234 2232 4777777777777653
No 59
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.14 Score=34.29 Aligned_cols=68 Identities=10% Similarity=0.195 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecC------CCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecc
Q 032716 7 KRLMRDFKRLQQDPPAGISGAPQD------NNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (135)
Q Consensus 7 ~Rl~kEl~~l~~~~~~~i~~~~~~------~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 75 (135)
.+-..|+..|+.-=+..+.+.... +....+.+.+....+ .-..-.+.+.+.+|++||..||.|.+.+.
T Consensus 13 e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~~ 86 (138)
T 2yz0_A 13 EIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKNV 86 (138)
T ss_dssp HHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEECC
T ss_pred HHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEecC
Confidence 445667777764322223221110 124567777764332 11234788999999999999999998763
No 60
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=93.55 E-value=0.57 Score=31.02 Aligned_cols=107 Identities=11% Similarity=0.075 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecCC-----CCceeEEEEeCCCCC-CCCCCEEEEEEEcCCCCCCCCCeEEEeccCccC
Q 032716 6 KKRLMRDFKRLQQDPPAGISGAPQDN-----NIMLWNAVIFGPDDT-PWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHP 79 (135)
Q Consensus 6 ~~Rl~kEl~~l~~~~~~~i~~~~~~~-----~~~~w~~~i~gp~~t-py~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 79 (135)
..+...|+..|+.-=+..+.+..... ....+.+.+.....+ .-..-.+.+.|.+|++||.+||.|.+.+..
T Consensus 12 ~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~~~--- 88 (137)
T 1ukx_A 12 SQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKNAK--- 88 (137)
T ss_dssp HHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEEEE---
T ss_pred HHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEecCCcCCcccceEEEEEEECCCCCCCCCCcEEEecCC---
Confidence 34566788777643333343321111 134455556421111 001246899999999999999999885432
Q ss_pred CccCCC-cEEccCCCCCCCC--c-CCHHHHHHHHHHhhcC
Q 032716 80 NIYADG-SICLDILQNQWSP--I-YDVAAILTSIQVKLRF 115 (135)
Q Consensus 80 nV~~~G-~icl~~l~~~W~p--~-~~i~~il~~i~~ll~~ 115 (135)
++...- ....+.|.+.|.. + --|.+++..++..|.+
T Consensus 89 ~L~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~ 128 (137)
T 1ukx_A 89 GLSNESVNLLKSHLEELAKKQCGEVMIFELAHHVQSFLSE 128 (137)
T ss_dssp SSSSSHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCEEhHHHHHHHHHHHHh
Confidence 221100 0111122223422 2 2477777777776654
No 61
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.56 E-value=0.2 Score=33.08 Aligned_cols=66 Identities=9% Similarity=0.043 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhCCCC--CeEEEe-cCCCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEec
Q 032716 8 RLMRDFKRLQQDPPA--GISGAP-QDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVS 74 (135)
Q Consensus 8 Rl~kEl~~l~~~~~~--~i~~~~-~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 74 (135)
+...|+..|+.-=+. .+.+.. ...+...+.+.+...... -..-.+.+.+.+|++||..||.+.+.+
T Consensus 11 ~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~~~~~-~~~~~~~L~~~~p~~YP~~~P~i~l~~ 79 (128)
T 2ebk_A 11 PVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFM-DADIPLELVFHLPVNYPSCLPGISINS 79 (128)
T ss_dssp HHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEECCTTT-TCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred HHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecCCCCC-CCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence 455677666532111 222211 112234666777533211 113478999999999999999987653
No 62
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=91.54 E-value=0.2 Score=34.40 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=22.1
Q ss_pred EEEEEEEcCCCCCCCCCeEEEecc
Q 032716 52 TFKLTLQFTEDYPNKPPTVRFVSR 75 (135)
Q Consensus 52 ~f~~~i~fp~~YP~~pP~v~f~t~ 75 (135)
.+.+.|.+|.+||..+|.|...+.
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~~ 99 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRSS 99 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEECS
T ss_pred eEEEEEEcCCCCCCCCCcEEEEeC
Confidence 799999999999999999998774
No 63
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=91.53 E-value=0.15 Score=34.77 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.0
Q ss_pred CEEEEEEEcCCCCCCCCCeEEEecc
Q 032716 51 GTFKLTLQFTEDYPNKPPTVRFVSR 75 (135)
Q Consensus 51 g~f~~~i~fp~~YP~~pP~v~f~t~ 75 (135)
-.+.+.+.+|.+||..||.+.+...
T Consensus 73 ~~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 73 AMFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEEECSSTTSSCCCCEEECT
T ss_pred ceEEEEEECCCCCCCCCCeEEEEcc
Confidence 3688999999999999999988764
No 64
>3u3c_B Paxillin LD2 peptide; 4-helix bundle, focal adhesion, tyrosine kinase, transferase-signaling protein complex; 3.70A {Homo sapiens}
Probab=78.68 E-value=1.9 Score=20.10 Aligned_cols=21 Identities=29% Similarity=0.676 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCe
Q 032716 4 PAKKRLMRDFKRLQQDPPAGI 24 (135)
Q Consensus 4 ~a~~Rl~kEl~~l~~~~~~~i 24 (135)
+...||.-|+..++.+|+.|.
T Consensus 5 seldrlllelnavqhnppsg~ 25 (26)
T 3u3c_B 5 SELDRLLLELNAVQHNPPSGX 25 (26)
T ss_pred HHHHHHHHHHhhhccCCCCCC
Confidence 356899999999999998874
No 65
>3g9r_A Fusion complex of HIV-1 envelope glycoprotein and saccharomyces cerevisiae general...; GP41, MPER, membrane fusion, AIDS; 2.00A {Human immunodeficiency virus 1}
Probab=28.97 E-value=44 Score=17.43 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHhh
Q 032716 4 PAKKRLMRDFKRLQQ 18 (135)
Q Consensus 4 ~a~~Rl~kEl~~l~~ 18 (135)
+..+|+..|++.+++
T Consensus 28 ~~~~~~~~~~~~~~~ 42 (42)
T 3g9r_A 28 SKIKRIENEIKRIKK 42 (42)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC
Confidence 357999999998863
No 66
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=28.04 E-value=60 Score=23.13 Aligned_cols=26 Identities=12% Similarity=0.313 Sum_probs=22.4
Q ss_pred CCCEEEEEEEcCCCCCC-----CCCeEEEec
Q 032716 49 DGGTFKLTLQFTEDYPN-----KPPTVRFVS 74 (135)
Q Consensus 49 ~gg~f~~~i~fp~~YP~-----~pP~v~f~t 74 (135)
+.|.|.|.=.+|--||. .||.|.|.-
T Consensus 109 ~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~V 139 (209)
T 2bum_A 109 GTGFWSFNTIKPGAVPGRKGSTQAPHISLII 139 (209)
T ss_dssp TTCCEEEEEECCCCCBCSTTCBCCCCEEEEE
T ss_pred CCcEEEEEEEccCcccCCCCCccCcEEEEEE
Confidence 46889999999999998 799888763
No 67
>3pft_A Flavin reductase; desulfurization, oxidoreductase; HET: FMN; 1.60A {Mycobacterium goodii} SCOP: b.45.1.0
Probab=27.26 E-value=30 Score=23.13 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=24.6
Q ss_pred CCCCeEEEe---ccCccCCccCCCcEEccCCCCC
Q 032716 65 NKPPTVRFV---SRMFHPNIYADGSICLDILQNQ 95 (135)
Q Consensus 65 ~~pP~v~f~---t~i~HpnV~~~G~icl~~l~~~ 95 (135)
.+||.|.+. +.--|++|..+|..|++++.++
T Consensus 42 ~~PP~v~v~i~~~~~t~~~i~~~~~F~Vnvl~~~ 75 (157)
T 3pft_A 42 LEPPLVAFAVQNSSTTWPKLKDLPSLGISVLGEA 75 (157)
T ss_dssp TTTTEEEEEEETTCSSHHHHTTSSCEEEEECBTT
T ss_pred CCCcEEEEEECCCCchHHHHHhCCEEEEEECCHH
Confidence 368888776 3456889999999999999754
No 68
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=26.93 E-value=1.6e+02 Score=20.43 Aligned_cols=43 Identities=21% Similarity=0.443 Sum_probs=30.5
Q ss_pred CCCceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecc
Q 032716 31 NNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (135)
Q Consensus 31 ~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 75 (135)
+.-.+|.+.+.|+.+.--..-.=++.+.+.++||. |...+..+
T Consensus 30 ~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~n--p~Rvv~~P 72 (175)
T 3rls_A 30 EHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPN--PVRSIEAP 72 (175)
T ss_dssp TCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSS--CEEEECSS
T ss_pred CCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCC--CcEEEeCC
Confidence 34568999999987654444566789999999974 55555444
No 69
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=23.16 E-value=43 Score=20.64 Aligned_cols=13 Identities=54% Similarity=0.779 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHH
Q 032716 4 PAKKRLMRDFKRL 16 (135)
Q Consensus 4 ~a~~Rl~kEl~~l 16 (135)
+..||+++|++-|
T Consensus 62 sQLKRvQRdlrGL 74 (87)
T 2rf4_B 62 SQLKRIQRDFKGL 74 (87)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHhhcCC
Confidence 4579999998866
No 70
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=22.99 E-value=55 Score=15.00 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHh
Q 032716 5 AKKRLMRDFKRLQ 17 (135)
Q Consensus 5 a~~Rl~kEl~~l~ 17 (135)
-++.|.+|+++-+
T Consensus 9 lqkkirkelkqrq 21 (26)
T 1m46_B 9 LQKKIRKELKQRQ 21 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3578888887643
Done!