BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032718
         (135 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9CXL1|TM50A_MOUSE Transmembrane protein 50A OS=Mus musculus GN=Tmem50a PE=2 SV=1
          Length = 157

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 5/140 (3%)

Query: 1   MDLAELWAIFGPGVAGAVFGAGWWFWIDAVVCSSVKVSFVH--YLPGIFASLAALMFNCV 58
           MD  E         AG +F  GWW  IDA V       F H  +  G+ A++A LM N V
Sbjct: 14  MDWGEKRNTIASIAAGVLFFTGWWIIIDAAVMYPRMDQFNHSYHTCGVIATIAFLMINAV 73

Query: 59  RKEDIDYSPYEEG---EWRLKLWLFLAYVVSFVSLAASVGLLIQDSLVKTGPSAWTGTAG 115
               +    Y EG   +   ++WLF+ ++++F SL AS+ +L    + K     + G A 
Sbjct: 74  SNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGYVAKEKDVVYPGIAV 133

Query: 116 VLQCVFVLISGLIYWTSHSE 135
             Q  F+   GL++    +E
Sbjct: 134 FFQNAFIFFGGLVFKFGRTE 153


>sp|O95807|TM50A_HUMAN Transmembrane protein 50A OS=Homo sapiens GN=TMEM50A PE=2 SV=1
          Length = 157

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 5/126 (3%)

Query: 15  AGAVFGAGWWFWIDAVVCSSVKVSFVH--YLPGIFASLAALMFNCVRKEDIDYSPYEEG- 71
           AG +F  GWW  IDA V       F H  +  G+ A++A LM N V    +    Y EG 
Sbjct: 28  AGVLFFTGWWIIIDAAVIYPTMKDFNHSYHACGVIATIAFLMINAVSNGQVRGDSYSEGC 87

Query: 72  --EWRLKLWLFLAYVVSFVSLAASVGLLIQDSLVKTGPSAWTGTAGVLQCVFVLISGLIY 129
             +   ++WLF+ ++++F SL AS+ +L    + K     + G A   Q  F+   GL++
Sbjct: 88  LGQTGARIWLFVGFMLAFGSLIASMWILFGGYVAKEKDIVYPGIAVFFQNAFIFFGGLVF 147

Query: 130 WTSHSE 135
               +E
Sbjct: 148 KFGRTE 153


>sp|Q54T60|TMM50_DICDI Transmembrane protein 50 homolog OS=Dictyostelium discoideum
           GN=tmem50 PE=3 SV=1
          Length = 156

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 15/123 (12%)

Query: 12  PGVAGAVFGAGWWFWIDAVVCSSVK----------VSFVHYLPGIFASLAALMFNCVRKE 61
           P +AG +F AGW+ WID  V  +            + +++YLPGIFA+L  +M N V   
Sbjct: 10  PALAGIIFTAGWFLWIDGHVYENTNNKNADFDGPHIQWIYYLPGIFATLGMVMANIVDLS 69

Query: 62  DIDYSP--YEEGEWRLKLWLFLAYVVSFVSLAASVGLLIQDSLVKTGPS---AWTGTAGV 116
            ++ +   ++ G  ++++WLF+++ +SF  + A++ +++   L     +    W G A  
Sbjct: 70  ALNSNSLLFDGGATKVRVWLFISFAISFGCIGAALWIMVAVFLPPHNTNDAAQWPGIAIT 129

Query: 117 LQC 119
           LQ 
Sbjct: 130 LQT 132


>sp|Q5R4C3|TM50B_PONAB Transmembrane protein 50B OS=Pongo abelii GN=TMEM50B PE=2 SV=1
          Length = 158

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 6/127 (4%)

Query: 14  VAGAVFGAGWWFWIDAVVCSSVKVSFVH--YLPGIFASLAALMFNCVRKEDIDYSPYEE- 70
           VAG +F  GWW  IDA V         H  +  G+F++LA  M N V    +    YE  
Sbjct: 29  VAGILFFTGWWIMIDAAVVYPKPEQLNHAFHTCGVFSTLAFFMINAVSNAQVRGDSYESG 88

Query: 71  --GEWRLKLWLFLAYVVSFVSLAASVGLLIQDSLVKTGPSAWTGTAGVLQCVFVLISGLI 128
             G    ++WLF+ +++ F SL AS+ +L   + V      + G A   Q   +  S LI
Sbjct: 89  CLGRTGARVWLFIGFMLMFGSLIASMWILF-GAYVTQNTDVYPGLAVFFQNALIFFSTLI 147

Query: 129 YWTSHSE 135
           Y    +E
Sbjct: 148 YKFGRTE 154


>sp|A9CAZ8|TM50B_PAPAN Transmembrane protein 50B OS=Papio anubis GN=TMEM50B PE=4 SV=1
          Length = 158

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 6/127 (4%)

Query: 14  VAGAVFGAGWWFWIDAVVCSSVKVSFVH--YLPGIFASLAALMFNCVRKEDIDYSPYEE- 70
           VAG +F  GWW  IDA V         H  +  G+F++LA  M N V    +    YE  
Sbjct: 29  VAGILFFTGWWIMIDAAVVYPKPEQLNHAFHTCGVFSTLAFFMINAVSNAQVRGDSYESG 88

Query: 71  --GEWRLKLWLFLAYVVSFVSLAASVGLLIQDSLVKTGPSAWTGTAGVLQCVFVLISGLI 128
             G    ++WLF+ +++ F SL AS+ +L   + V      + G A   Q   +  S LI
Sbjct: 89  CLGRTGARVWLFIGFMLMFGSLIASMWILF-GAYVTQNTDVYPGLAVFFQNALIFFSTLI 147

Query: 129 YWTSHSE 135
           Y    +E
Sbjct: 148 YKFGRTE 154


>sp|P56557|TM50B_HUMAN Transmembrane protein 50B OS=Homo sapiens GN=TMEM50B PE=1 SV=2
          Length = 158

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 6/127 (4%)

Query: 14  VAGAVFGAGWWFWIDAVVCSSVKVSFVH--YLPGIFASLAALMFNCVRKEDIDYSPYEE- 70
           VAG +F  GWW  IDA V         H  +  G+F++LA  M N V    +    YE  
Sbjct: 29  VAGILFFTGWWIMIDAAVVYPKPEQLNHAFHTCGVFSTLAFFMINAVSNAQVRGDSYESG 88

Query: 71  --GEWRLKLWLFLAYVVSFVSLAASVGLLIQDSLVKTGPSAWTGTAGVLQCVFVLISGLI 128
             G    ++WLF+ +++ F SL AS+ +L   + V      + G A   Q   +  S LI
Sbjct: 89  CLGRTGARVWLFIGFMLMFGSLIASMWILF-GAYVTQNTDVYPGLAVFFQNALIFFSTLI 147

Query: 129 YWTSHSE 135
           Y    +E
Sbjct: 148 YKFGRTE 154


>sp|Q3SZL9|TM50B_BOVIN Transmembrane protein 50B OS=Bos taurus GN=TMEM50B PE=2 SV=1
          Length = 158

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 6/127 (4%)

Query: 14  VAGAVFGAGWWFWIDAVVCSSVKVSFVH--YLPGIFASLAALMFNCVRKEDIDYSPYEE- 70
           VAG +F  GWW  IDA V         H  +  G+F++LA  M N V    +    YE  
Sbjct: 29  VAGILFFTGWWIMIDAAVVYPKPEQLNHAFHTCGVFSTLAFFMINAVSNAQVRGDSYESG 88

Query: 71  --GEWRLKLWLFLAYVVSFVSLAASVGLLIQDSLVKTGPSAWTGTAGVLQCVFVLISGLI 128
             G    ++WLF+ +++ F SL AS+ +L   + V      + G A   Q   +  S LI
Sbjct: 89  CLGRTGARVWLFIGFMLMFGSLIASMWILF-GAYVTQNTDVYPGLAVFFQNALIFFSTLI 147

Query: 129 YWTSHSE 135
           Y    +E
Sbjct: 148 YKFGRTE 154


>sp|Q9D1X9|TM50B_MOUSE Transmembrane protein 50B OS=Mus musculus GN=Tmem50b PE=2 SV=1
          Length = 158

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 6/127 (4%)

Query: 14  VAGAVFGAGWWFWIDAVVCSSVKVSFVH--YLPGIFASLAALMFNCVRKEDIDYSPYEE- 70
           VAG +F  GWW  IDA V         H  +  G+F++LA  M N V    +    YE  
Sbjct: 29  VAGILFFTGWWIMIDAAVVYPKPEQLNHAFHTCGVFSTLAFFMINAVSNAQVRGDSYESG 88

Query: 71  --GEWRLKLWLFLAYVVSFVSLAASVGLLIQDSLVKTGPSAWTGTAGVLQCVFVLISGLI 128
             G    ++WLF+ +++ F SL AS+ +L   + V      + G A   Q   +  S LI
Sbjct: 89  CLGRTGARVWLFIGFMLMFGSLIASMWILF-GAYVTQNIDVYPGLAVFFQNALIFFSTLI 147

Query: 129 YWTSHSE 135
           Y    +E
Sbjct: 148 YKFGRTE 154


>sp|Q12016|VPS68_YEAST Vacuolar protein sorting-associated protein 68 OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=VPS68 PE=1
           SV=1
          Length = 184

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 24/145 (16%)

Query: 14  VAGAVFGAGWWFWIDAVV------CSSVKVSFVHYLPGIFASLAALMFNCVRKEDI---- 63
           ++GA++  G+W ++DAV+       S V V+F+ ++P + ++L  L+ N + K  +    
Sbjct: 29  LSGALYALGFWIFLDAVLYSRYSNASDVHVTFIDWIPFLCSTLGTLIVNSIEKNRLLQGA 88

Query: 64  ---DYSPYEEG--------EWRLKLWLFLAYVVSFVSLAASVGLLIQDSLVK---TGPSA 109
              D   +  G         W+ +  LF  + +    L+ S+ +LI   LVK   T P+ 
Sbjct: 89  LSSDGGAFGSGVGDLDSSMAWQARTVLFFGFALLAGGLSGSIVVLIIKFLVKDYNTYPTL 148

Query: 110 WTGTAGVLQCVFVLISGLIYWTSHS 134
             G   VL  V +L+S ++ W + +
Sbjct: 149 GMGVNNVLGNVCILLSCVVLWIAQN 173


>sp|Q8ZM23|UXAC_SALTY Uronate isomerase OS=Salmonella typhimurium (strain LT2 / SGSC1412
           / ATCC 700720) GN=uxaC PE=1 SV=1
          Length = 470

 Score = 32.7 bits (73), Expect = 0.76,   Method: Composition-based stats.
 Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)

Query: 11  GPGVAGAV-FGAGWWF 25
           GPG+AG V FG+GWWF
Sbjct: 370 GPGIAGKVQFGSGWWF 385


>sp|B4TVB3|UXAC_SALSV Uronate isomerase OS=Salmonella schwarzengrund (strain CVM19633)
           GN=uxaC PE=3 SV=1
          Length = 470

 Score = 32.7 bits (73), Expect = 0.76,   Method: Composition-based stats.
 Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)

Query: 11  GPGVAGAV-FGAGWWF 25
           GPG+AG V FG+GWWF
Sbjct: 370 GPGIAGKVQFGSGWWF 385


>sp|C0PYB6|UXAC_SALPC Uronate isomerase OS=Salmonella paratyphi C (strain RKS4594)
           GN=uxaC PE=3 SV=1
          Length = 470

 Score = 32.7 bits (73), Expect = 0.76,   Method: Composition-based stats.
 Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)

Query: 11  GPGVAGAV-FGAGWWF 25
           GPG+AG V FG+GWWF
Sbjct: 370 GPGIAGKVQFGSGWWF 385


>sp|A9N4U7|UXAC_SALPB Uronate isomerase OS=Salmonella paratyphi B (strain ATCC BAA-1250 /
           SPB7) GN=uxaC PE=3 SV=1
          Length = 470

 Score = 32.7 bits (73), Expect = 0.76,   Method: Composition-based stats.
 Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)

Query: 11  GPGVAGAV-FGAGWWF 25
           GPG+AG V FG+GWWF
Sbjct: 370 GPGIAGKVQFGSGWWF 385


>sp|B5RE96|UXAC_SALG2 Uronate isomerase OS=Salmonella gallinarum (strain 287/91 / NCTC
           13346) GN=uxaC PE=3 SV=1
          Length = 470

 Score = 32.7 bits (73), Expect = 0.76,   Method: Composition-based stats.
 Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)

Query: 11  GPGVAGAV-FGAGWWF 25
           GPG+AG V FG+GWWF
Sbjct: 370 GPGIAGKVQFGSGWWF 385


>sp|B5QYB2|UXAC_SALEP Uronate isomerase OS=Salmonella enteritidis PT4 (strain P125109)
           GN=uxaC PE=3 SV=1
          Length = 470

 Score = 32.7 bits (73), Expect = 0.76,   Method: Composition-based stats.
 Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)

Query: 11  GPGVAGAV-FGAGWWF 25
           GPG+AG V FG+GWWF
Sbjct: 370 GPGIAGKVQFGSGWWF 385


>sp|B5FV01|UXAC_SALDC Uronate isomerase OS=Salmonella dublin (strain CT_02021853) GN=uxaC
           PE=3 SV=1
          Length = 470

 Score = 32.7 bits (73), Expect = 0.76,   Method: Composition-based stats.
 Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)

Query: 11  GPGVAGAV-FGAGWWF 25
           GPG+AG V FG+GWWF
Sbjct: 370 GPGIAGKVQFGSGWWF 385


>sp|Q57JX8|UXAC_SALCH Uronate isomerase OS=Salmonella choleraesuis (strain SC-B67)
           GN=uxaC PE=3 SV=1
          Length = 470

 Score = 32.7 bits (73), Expect = 0.76,   Method: Composition-based stats.
 Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)

Query: 11  GPGVAGAV-FGAGWWF 25
           GPG+AG V FG+GWWF
Sbjct: 370 GPGIAGKVQFGSGWWF 385


>sp|B5F623|UXAC_SALA4 Uronate isomerase OS=Salmonella agona (strain SL483) GN=uxaC PE=3
           SV=1
          Length = 470

 Score = 32.7 bits (73), Expect = 0.76,   Method: Composition-based stats.
 Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)

Query: 11  GPGVAGAV-FGAGWWF 25
           GPG+AG V FG+GWWF
Sbjct: 370 GPGIAGKVQFGSGWWF 385


>sp|B5BFV0|UXAC_SALPK Uronate isomerase OS=Salmonella paratyphi A (strain AKU_12601)
           GN=uxaC PE=3 SV=1
          Length = 470

 Score = 32.7 bits (73), Expect = 0.77,   Method: Composition-based stats.
 Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)

Query: 11  GPGVAGAV-FGAGWWF 25
           GPG+AG V FG+GWWF
Sbjct: 370 GPGIAGKVQFGSGWWF 385


>sp|Q5PMP8|UXAC_SALPA Uronate isomerase OS=Salmonella paratyphi A (strain ATCC 9150 /
           SARB42) GN=uxaC PE=3 SV=1
          Length = 470

 Score = 32.7 bits (73), Expect = 0.77,   Method: Composition-based stats.
 Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)

Query: 11  GPGVAGAV-FGAGWWF 25
           GPG+AG V FG+GWWF
Sbjct: 370 GPGIAGKVQFGSGWWF 385


>sp|B4T5P8|UXAC_SALNS Uronate isomerase OS=Salmonella newport (strain SL254) GN=uxaC PE=3
           SV=1
          Length = 470

 Score = 32.7 bits (73), Expect = 0.77,   Method: Composition-based stats.
 Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)

Query: 11  GPGVAGAV-FGAGWWF 25
           GPG+AG V FG+GWWF
Sbjct: 370 GPGIAGKVQFGSGWWF 385


>sp|A9MQL9|UXAC_SALAR Uronate isomerase OS=Salmonella arizonae (strain ATCC BAA-731 /
           CDC346-86 / RSK2980) GN=uxaC PE=3 SV=1
          Length = 470

 Score = 32.7 bits (73), Expect = 0.77,   Method: Composition-based stats.
 Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)

Query: 11  GPGVAGAV-FGAGWWF 25
           GPG+AG V FG+GWWF
Sbjct: 370 GPGIAGKVQFGSGWWF 385


>sp|Q8Z3R7|UXAC_SALTI Uronate isomerase OS=Salmonella typhi GN=uxaC PE=3 SV=1
          Length = 470

 Score = 32.3 bits (72), Expect = 0.80,   Method: Composition-based stats.
 Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)

Query: 11  GPGVAGAV-FGAGWWF 25
           GPG+AG V FG+GWWF
Sbjct: 370 GPGIAGKVQFGSGWWF 385


>sp|B4THM8|UXAC_SALHS Uronate isomerase OS=Salmonella heidelberg (strain SL476) GN=uxaC
           PE=3 SV=1
          Length = 470

 Score = 32.3 bits (72), Expect = 0.82,   Method: Composition-based stats.
 Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)

Query: 11  GPGVAGAV-FGAGWWF 25
           GPG+AG V FG+GWWF
Sbjct: 370 GPGIAGKVQFGSGWWF 385


>sp|O05435|MVIN_MYCTU Probable peptidoglycan biosynthesis protein MviN OS=Mycobacterium
           tuberculosis GN=mviN PE=1 SV=2
          Length = 1184

 Score = 31.2 bits (69), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 45  GIFASLAALMFNCVRKEDIDYSPYEEGEWRLKLWLFLAYVVSFVSLAASVGLLIQDSLVK 104
           G+FA  A L+   +R+E I   P    + RLK +  +A  +    L + +GL++ + +  
Sbjct: 223 GVFAQTAVLLV-AIRREHISLRPLWGIDQRLKRFGAMAAAMVLYVLISQLGLVVGNRIAS 281

Query: 105 T----GPSAWTGTAGVLQCVFVLI 124
           T    GP+ +  T  VL   F +I
Sbjct: 282 TAAASGPAIYNYTWLVLMLPFGMI 305


>sp|O43073|YGW2_SCHPO UPF0220 protein C8D2.02c OS=Schizosaccharomyces pombe (strain 972 /
           ATCC 24843) GN=pi063 PE=3 SV=1
          Length = 170

 Score = 30.8 bits (68), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/130 (20%), Positives = 58/130 (44%), Gaps = 12/130 (9%)

Query: 15  AGAVFGAGWWFWIDAVVCS------SVKVSFVHYLPGIFASLAALMFNCVRKEDIDYSPY 68
           AG +F +  W ++DA + S      ++ ++F+ ++P + + L  ++ N + K  +    +
Sbjct: 28  AGIMFASAVWVFVDAALYSAFDYARNLHITFIDWIPFLCSILGIVIVNSIDKSRLSGDSF 87

Query: 69  ----EEGEWRLKLWLFLAYVVSFVSLAASVGLLIQDSLVK--TGPSAWTGTAGVLQCVFV 122
               E    + +  LF+ + +    L  S  + I   +V    G S   G+A ++  +  
Sbjct: 88  AYTDESLARKARFILFIGFALLAGGLGGSFTVFILKYVVAGYEGKSLLMGSANIISNILF 147

Query: 123 LISGLIYWTS 132
           +IS    W +
Sbjct: 148 MISATALWIT 157


>sp|Q80W68|KIRR1_MOUSE Kin of IRRE-like protein 1 OS=Mus musculus GN=Kirrel PE=1 SV=1
          Length = 789

 Score = 28.9 bits (63), Expect = 8.7,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 76  KLW---LFLAYVVSFVSLAASV-GLLIQDSLVKTGPSAWTGTAGVLQCVFVLISGLIYWT 131
           K+W   L +AY++ FV+LA ++ G   + S      +   G   VL CV +  SG++ WT
Sbjct: 28  KMWAPHLVVAYLI-FVTLALALPGTQTRFSQEPADQTVVAGQRAVLPCVLLNYSGIVQWT 86


>sp|Q114N4|COXX_TRIEI Protoheme IX farnesyltransferase OS=Trichodesmium erythraeum
          (strain IMS101) GN=ctaB PE=3 SV=1
          Length = 328

 Score = 28.9 bits (63), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 25 FWIDAVVCSSVKVSFVHYLPGIFASLAALMFNCVRKEDIDYSPYEEGEWR 74
           W+ A    S+ + FV    G  AS AA   NC+   DIDY   E   WR
Sbjct: 43 MWLGAKGEVSLFLLFVTLTGGALASGAANAINCIYDSDIDYI-MERTRWR 91


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.326    0.139    0.472 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,789,172
Number of Sequences: 539616
Number of extensions: 1769127
Number of successful extensions: 5840
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 5804
Number of HSP's gapped (non-prelim): 65
length of query: 135
length of database: 191,569,459
effective HSP length: 100
effective length of query: 35
effective length of database: 137,607,859
effective search space: 4816275065
effective search space used: 4816275065
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)