Query 032718
Match_columns 135
No_of_seqs 103 out of 184
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 05:03:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032718.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032718hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05255 UPF0220: Uncharacteri 100.0 3.1E-54 6.7E-59 334.0 12.9 135 1-135 15-162 (166)
2 KOG3393 Predicted membrane pro 100.0 9.1E-53 2E-57 320.1 9.9 132 2-135 15-152 (157)
3 PRK10714 undecaprenyl phosphat 62.8 21 0.00046 29.7 5.6 55 74-129 230-284 (325)
4 PF11119 DUF2633: Protein of u 54.1 18 0.0004 24.0 3.0 19 73-91 8-26 (59)
5 PF06963 FPN1: Ferroportin1 (F 44.1 64 0.0014 28.5 5.8 33 98-130 58-90 (432)
6 PRK02935 hypothetical protein; 41.3 74 0.0016 23.6 4.8 48 73-132 14-61 (110)
7 PF04657 DUF606: Protein of un 28.1 1.7E+02 0.0036 21.7 5.0 52 6-57 31-83 (138)
8 COG1852 Uncharacterized conser 19.1 1.9E+02 0.0041 23.7 4.0 51 83-133 10-61 (209)
9 PF13706 PepSY_TM_3: PepSY-ass 19.0 81 0.0018 18.3 1.5 24 108-131 8-31 (37)
10 PF11023 DUF2614: Protein of u 18.9 2.5E+02 0.0053 20.9 4.3 47 73-131 13-59 (114)
No 1
>PF05255 UPF0220: Uncharacterised protein family (UPF0220); InterPro: IPR007919 This family of proteins is functionally uncharacterised.
Probab=100.00 E-value=3.1e-54 Score=333.99 Aligned_cols=135 Identities=42% Similarity=0.830 Sum_probs=126.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc------cccccchhhHHHHHHHHHHHhcccCCccccCCCC----C
Q 032718 1 MDLAELWAIFGPGVAGAVFGAGWWFWIDAVVCSSV------KVSFVHYLPGIFASLAALMFNCVRKEDIDYSPYE----E 70 (135)
Q Consensus 1 ~~~~~~~~~~~~~~AGaLF~~gwWi~iDa~v~~~~------~~~f~~~ipgI~stlgm~miN~V~~~~l~~~~~~----~ 70 (135)
.|+++.||++++|+||+||++|||++|||++++++ |++|+||+||||||+||+|+|+|||+||++|+++ .
T Consensus 15 ~~~~~~~~~~~~~~AGaLF~~gwWi~iDa~v~s~~~~~~~~~~~f~~~ipgI~stlgm~mvN~V~~~~l~~~~~~~~~~~ 94 (166)
T PF05255_consen 15 FDWSEKRNAIGSYVAGALFALGWWIFIDAAVYSKHANGSDVHVTFVDWIPGIFSTLGMFMVNSVSKSRLRGDSYSESGCG 94 (166)
T ss_pred CCchHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCccccceeeehHHHHHHHHHHhccccHHHhcCCCCCCCCCc
Confidence 37899999999999999999999999999999765 8999999999999999999999999999977664 2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--CCCceeehHHHHHHHHHHHHHhHHhhhcc-CC
Q 032718 71 GEWRLKLWLFLAYVVSFVSLAASVGLLIQDSLVK--TGPSAWTGTAGVLQCVFVLISGLIYWTSH-SE 135 (135)
Q Consensus 71 ~~~~AR~~LFigf~l~fggl~~s~~ili~~yv~~--~~~~~~~Gva~vlqN~lI~~sslil~~~r-~e 135 (135)
+.||||+|||+||+++|||++||+|||++||++| ++|+.|||||+++||++||+||++||++| +|
T Consensus 95 ~~~~aR~~LFigf~l~fggl~~s~~vli~~yv~~~~~~~~~~~Gva~vlqN~lI~~Sslvl~~~r~~e 162 (166)
T PF05255_consen 95 GAWRARLWLFIGFALSFGGLAGSVWVLILKYVVPQYTKPTLWPGVANVLQNALIFLSSLVLWFGRNTE 162 (166)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcccccHHHHHHHHHHHHHHHHHhccccc
Confidence 5699999999999999999999999999999999 57899999999999999999999999999 55
No 2
>KOG3393 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=9.1e-53 Score=320.14 Aligned_cols=132 Identities=36% Similarity=0.672 Sum_probs=124.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC--ccccccchhhHHHHHHHHHHHhcccCCccccCCCCC---chhHHH
Q 032718 2 DLAELWAIFGPGVAGAVFGAGWWFWIDAVVCSS--VKVSFVHYLPGIFASLAALMFNCVRKEDIDYSPYEE---GEWRLK 76 (135)
Q Consensus 2 ~~~~~~~~~~~~~AGaLF~~gwWi~iDa~v~~~--~~~~f~~~ipgI~stlgm~miN~V~~~~l~~~~~~~---~~~~AR 76 (135)
|++++||.+. +||+||++|||++|||+++++ +|+||+||+|++|||++++|||+|||+|+++|+|++ ++++||
T Consensus 15 ~~~~rrn~v~--~aG~LFf~GwWi~iDAa~~~~~~~~~t~~~~i~~v~stl~~~mVNaI~~~~vsgds~a~g~sga~~AR 92 (157)
T KOG3393|consen 15 DWGERRNAVA--VAGALFFTGWWIMIDAALISPKSEQITFVYWIIGVFSTLAFLMVNAISNSQVSGDSYAEGCSGARGAR 92 (157)
T ss_pred cccccccchH--HHHHHHHHHHHHhhhhhhccCcccceeeeeehhHHHHHHHHHhheccccceecCCcccccccccchhh
Confidence 7889998776 999999999999999999975 599999999999999999999999999999999865 569999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccCCCc-eeehHHHHHHHHHHHHHhHHhhhccCC
Q 032718 77 LWLFLAYVVSFVSLAASVGLLIQDSLVKTGPS-AWTGTAGVLQCVFVLISGLIYWTSHSE 135 (135)
Q Consensus 77 ~~LFigf~l~fggl~~s~~ili~~yv~~~~~~-~~~Gva~vlqN~lI~~sslil~~~r~e 135 (135)
+|||+||+|+||||+||+||||.||++++++. +|||+|+++||++||+|+++|||+|+|
T Consensus 93 ~wLfiGF~l~fgsLias~wVli~~yv~~~~~~~v~~GvA~~~~N~~i~~s~~v~kfgr~e 152 (157)
T KOG3393|consen 93 IWLFIGFALLFGSLIASIWVLIGKYVVKEYDGKVWPGVANFLQNVLIFFSSLVYKFGRTE 152 (157)
T ss_pred hHHHHHHHHHHhhhhhhHHHHhHHHHhcCCCCcccccHHHHHHHHHHHHHHHHHhhcCch
Confidence 99999999999999999999999999998665 799999999999999999999999998
No 3
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=62.78 E-value=21 Score=29.74 Aligned_cols=55 Identities=16% Similarity=0.218 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCceeehHHHHHHHHHHHHHhHHh
Q 032718 74 RLKLWLFLAYVVSFVSLAASVGLLIQDSLVKTGPSAWTGTAGVLQCVFVLISGLIY 129 (135)
Q Consensus 74 ~AR~~LFigf~l~fggl~~s~~ili~~yv~~~~~~~~~Gva~vlqN~lI~~sslil 129 (135)
--|++..+|+.+++.|++.++++++.++.... +..-+|...++.-.+++.+-.++
T Consensus 230 Plr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~l~~~g~~l~ 284 (325)
T PRK10714 230 PLRLLSLLGSIIAIGGFSLAVLLVVLRLTFGP-QWAAEGVFMLFAVLFTFIGAQFI 284 (325)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCCcHHHHHHHHHHHHHHHH
Confidence 34888999999999999989998887775322 10114555555544444444333
No 4
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=54.08 E-value=18 Score=23.96 Aligned_cols=19 Identities=16% Similarity=0.424 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 032718 73 WRLKLWLFLAYVVSFVSLA 91 (135)
Q Consensus 73 ~~AR~~LFigf~l~fggl~ 91 (135)
.-+|++|.|+|...||=++
T Consensus 8 ~mtriVLLISfiIlfgRl~ 26 (59)
T PF11119_consen 8 RMTRIVLLISFIILFGRLI 26 (59)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999553
No 5
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=44.11 E-value=64 Score=28.55 Aligned_cols=33 Identities=15% Similarity=0.056 Sum_probs=24.6
Q ss_pred hhcccccCCCceeehHHHHHHHHHHHHHhHHhh
Q 032718 98 IQDSLVKTGPSAWTGTAGVLQCVFVLISGLIYW 130 (135)
Q Consensus 98 i~~yv~~~~~~~~~Gva~vlqN~lI~~sslil~ 130 (135)
+.+|+++.+...-.-..++.||+-+.+|+.++.
T Consensus 58 vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~ 90 (432)
T PF06963_consen 58 VGRWIDRSPRLKVIRTSLVVQNLSVAASCALFL 90 (432)
T ss_pred HHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 456666554345566789999999999998865
No 6
>PRK02935 hypothetical protein; Provisional
Probab=41.25 E-value=74 Score=23.55 Aligned_cols=48 Identities=13% Similarity=0.239 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCceeehHHHHHHHHHHHHHhHHhhhc
Q 032718 73 WRLKLWLFLAYVVSFVSLAASVGLLIQDSLVKTGPSAWTGTAGVLQCVFVLISGLIYWTS 132 (135)
Q Consensus 73 ~~AR~~LFigf~l~fggl~~s~~ili~~yv~~~~~~~~~Gva~vlqN~lI~~sslil~~~ 132 (135)
+-|-...|+|+.+|-.|+ ++ ++ ...-+++..++.-+.++.|+.+|++.
T Consensus 14 t~aL~lvfiG~~vMy~Gi------ff-----~~-~~~~m~ifm~~G~l~~l~S~vvYFwi 61 (110)
T PRK02935 14 TFALSLVFIGFIVMYLGI------FF-----RE-SIIIMTIFMLLGFLAVIASTVVYFWI 61 (110)
T ss_pred HHHHHHHHHHHHHHHHHH------Hh-----cc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788999988883 22 22 24678888999999999999988753
No 7
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=28.11 E-value=1.7e+02 Score=21.66 Aligned_cols=52 Identities=17% Similarity=0.045 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcc-CccccccchhhHHHHHHHHHHHhc
Q 032718 6 LWAIFGPGVAGAVFGAGWWFWIDAVVCS-SVKVSFVHYLPGIFASLAALMFNC 57 (135)
Q Consensus 6 ~~~~~~~~~AGaLF~~gwWi~iDa~v~~-~~~~~f~~~ipgI~stlgm~miN~ 57 (135)
.+.++-++..|.+...-.+++.+.--.+ -.+.+..+|+.|+++.+-....+.
T Consensus 31 ~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~~~ 83 (138)
T PF04657_consen 31 LVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSNII 83 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHHHH
Confidence 4557778999999999999998865222 246788899999999888666653
No 8
>COG1852 Uncharacterized conserved protein [Function unknown]
Probab=19.10 E-value=1.9e+02 Score=23.70 Aligned_cols=51 Identities=12% Similarity=0.116 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhhhhcccccCCCceeehHHHHHHHHHH-HHHhHHhhhcc
Q 032718 83 YVVSFVSLAASVGLLIQDSLVKTGPSAWTGTAGVLQCVFV-LISGLIYWTSH 133 (135)
Q Consensus 83 f~l~fggl~~s~~ili~~yv~~~~~~~~~Gva~vlqN~lI-~~sslil~~~r 133 (135)
|+.++++++.+.-.|...+..-++.-..||..++.-+.++ .+=...++++.
T Consensus 10 ~~~~~~~~i~~~~~l~i~r~~~~~kl~~~~~~L~~~~~fy~~ik~~~~~~~~ 61 (209)
T COG1852 10 FLSMLLAFILSGLALLISRISLKKKLIFPGFDLFTLDLFYAPIKTILFKLSE 61 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555665555555444433335689999999888777 55555666653
No 9
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=19.03 E-value=81 Score=18.32 Aligned_cols=24 Identities=17% Similarity=0.319 Sum_probs=15.8
Q ss_pred ceeehHHHHHHHHHHHHHhHHhhh
Q 032718 108 SAWTGTAGVLQCVFVLISGLIYWT 131 (135)
Q Consensus 108 ~~~~Gva~vlqN~lI~~sslil~~ 131 (135)
+.|.|+..-++=.++++|+.+.-|
T Consensus 8 H~W~Gl~~g~~l~~~~~tG~~~~f 31 (37)
T PF13706_consen 8 HRWLGLILGLLLFVIFLTGAVMVF 31 (37)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 356777777777777777665544
No 10
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=18.93 E-value=2.5e+02 Score=20.95 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCceeehHHHHHHHHHHHHHhHHhhh
Q 032718 73 WRLKLWLFLAYVVSFVSLAASVGLLIQDSLVKTGPSAWTGTAGVLQCVFVLISGLIYWT 131 (135)
Q Consensus 73 ~~AR~~LFigf~l~fggl~~s~~ili~~yv~~~~~~~~~Gva~vlqN~lI~~sslil~~ 131 (135)
.-|-...|+|+.+|.+|+ ++ ++. ..-+++..++.-+.++.|+.+|.+
T Consensus 13 ~~al~lif~g~~vmy~gi------~f-----~~~-~~im~ifmllG~L~~l~S~~VYfw 59 (114)
T PF11023_consen 13 TFALSLIFIGMIVMYIGI------FF-----KAS-PIIMVIFMLLGLLAILASTAVYFW 59 (114)
T ss_pred HHHHHHHHHHHHHHhhhh------hh-----ccc-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788888888763 11 221 357788888998888888888865
Done!