Query 032718
Match_columns 135
No_of_seqs 103 out of 184
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 07:45:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032718.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032718hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l9u_A Receptor tyrosine-prote 12.9 1.5E+02 0.0052 17.0 2.4 16 119-134 19-34 (40)
2 2jp3_A FXYD domain-containing 12.6 2.2E+02 0.0074 18.4 3.3 27 2-29 13-39 (67)
3 2jo1_A Phospholemman; FXYD1, N 11.5 2.4E+02 0.0083 18.4 3.3 27 2-29 12-38 (72)
4 2zxe_G FXYD10, phospholemman-l 10.1 2.6E+02 0.0088 18.4 3.1 27 2-29 15-41 (74)
5 2xq2_A Sodium/glucose cotransp 8.8 8.7E+02 0.03 20.5 9.1 49 7-62 454-504 (593)
6 3n2f_G Na+/K+ ATPase gamma sub 8.8 1.9E+02 0.0065 15.9 1.8 23 2-25 6-28 (31)
7 2l34_A TYRO protein tyrosine k 7.5 2.3E+02 0.008 15.5 1.8 13 122-134 21-33 (33)
8 1v54_K IHQ, cytochrome C oxida 7.3 3.7E+02 0.013 16.7 2.8 21 11-31 16-36 (56)
9 3o59_X DNA polymerase II large 7.0 1.1E+02 0.0039 25.0 0.4 18 86-103 152-169 (300)
10 1bts_A BAND 3 anion transport 6.1 3.7E+02 0.013 14.0 2.1 13 9-21 7-19 (26)
No 1
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=12.91 E-value=1.5e+02 Score=17.01 Aligned_cols=16 Identities=19% Similarity=0.592 Sum_probs=12.1
Q ss_pred HHHHHHHhHHhhhccC
Q 032718 119 CVFVLISGLIYWTSHS 134 (135)
Q Consensus 119 N~lI~~sslil~~~r~ 134 (135)
-++|+-|+.+||=||.
T Consensus 19 if~~lg~tflywrgrr 34 (40)
T 2l9u_A 19 IFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhCceeEEEcccc
Confidence 4567778899998863
No 2
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=12.58 E-value=2.2e+02 Score=18.40 Aligned_cols=27 Identities=22% Similarity=0.140 Sum_probs=20.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032718 2 DLAELWAIFGPGVAGAVFGAGWWFWIDA 29 (135)
Q Consensus 2 ~~~~~~~~~~~~~AGaLF~~gwWi~iDa 29 (135)
|++.+| .-|-++||.||.+|--+.+-.
T Consensus 13 DY~tLR-igGLifA~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 13 DWESLQ-LGGLIFGGLLCIAGIALALSG 39 (67)
T ss_dssp GGHHHH-HHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHhe-ecchhhHHHHHHHHHHHHHcC
Confidence 444444 568899999999998877754
No 3
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=11.48 E-value=2.4e+02 Score=18.41 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=19.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032718 2 DLAELWAIFGPGVAGAVFGAGWWFWIDA 29 (135)
Q Consensus 2 ~~~~~~~~~~~~~AGaLF~~gwWi~iDa 29 (135)
|++.+| .-|-++||.||.+|--+.+-.
T Consensus 12 DY~tLR-iGGLifA~vLfi~GI~iilS~ 38 (72)
T 2jo1_A 12 DYQSLQ-IGGLVIAGILFILGILIVLSR 38 (72)
T ss_dssp STHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhh-ccchHHHHHHHHHHHHHHHcC
Confidence 445554 467889999999998777653
No 4
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=10.14 E-value=2.6e+02 Score=18.38 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=20.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032718 2 DLAELWAIFGPGVAGAVFGAGWWFWIDA 29 (135)
Q Consensus 2 ~~~~~~~~~~~~~AGaLF~~gwWi~iDa 29 (135)
|++.+| .-|-++||.||.+|--+.+-.
T Consensus 15 DY~tLR-igGLifA~vLfi~GI~iilS~ 41 (74)
T 2zxe_G 15 DYYRLR-VVGLIVAAVLCVIGIIILLAG 41 (74)
T ss_dssp CHHHHH-HHHHHHHHHHHHHHHHHHTTT
T ss_pred chHHhe-eccchhHHHHHHHHHHHHHcC
Confidence 555554 568899999999998776653
No 5
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=8.82 E-value=8.7e+02 Score=20.53 Aligned_cols=49 Identities=12% Similarity=0.066 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCccccccc--hhhHHHHHHHHHHHhcccCCc
Q 032718 7 WAIFGPGVAGAVFGAGWWFWIDAVVCSSVKVSFVH--YLPGIFASLAALMFNCVRKED 62 (135)
Q Consensus 7 ~~~~~~~~AGaLF~~gwWi~iDa~v~~~~~~~f~~--~ipgI~stlgm~miN~V~~~~ 62 (135)
+.++...++|.+..+.|+.. . .+.++.+ -...+++.+.++++..+++++
T Consensus 454 ~gA~~g~i~G~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~iv~v~vSl~t~~~ 504 (593)
T 2xq2_A 454 KGAIIGVVASIPFALFLKFM------P-LSMPFMDQMLYTLLFTMVVIAFTSLSTSIN 504 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHHS------S-CCCCHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHH------c-CCccHHHHHHHHHHHHHHHHHhheeecCCC
Confidence 34556666776666655432 1 1122222 223445666777888776643
No 6
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=8.78 E-value=1.9e+02 Score=15.86 Aligned_cols=23 Identities=22% Similarity=0.092 Sum_probs=16.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Q 032718 2 DLAELWAIFGPGVAGAVFGAGWWF 25 (135)
Q Consensus 2 ~~~~~~~~~~~~~AGaLF~~gwWi 25 (135)
|++.+| .-|-+.||.||.+|.-+
T Consensus 6 Dy~tLr-igGLi~a~vLfi~gi~i 28 (31)
T 3n2f_G 6 DYETVR-NGGLIFAALAFIVGLII 28 (31)
T ss_dssp CHHHHH-HHHTTTHHHHHHHHHHH
T ss_pred ChHHHh-hcchhHHHHHHHHHHHH
Confidence 555554 46778999999988654
No 7
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=7.49 E-value=2.3e+02 Score=15.51 Aligned_cols=13 Identities=31% Similarity=0.488 Sum_probs=7.9
Q ss_pred HHHHhHHhhhccC
Q 032718 122 VLISGLIYWTSHS 134 (135)
Q Consensus 122 I~~sslil~~~r~ 134 (135)
..+..++|+++|+
T Consensus 21 ~~i~~~vy~~~r~ 33 (33)
T 2l34_A 21 VLIALAVYFLGRL 33 (33)
T ss_dssp HHHHHHHHHHCC-
T ss_pred HHHHHHHhheecC
Confidence 3456677777764
No 8
>1v54_K IHQ, cytochrome C oxidase polypeptide VIIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.5.1 PDB: 1oco_K* 1occ_K* 1ocz_K* 1ocr_K* 1v55_K* 2dyr_K* 2dys_K* 2eij_K* 2eik_K* 2eil_K* 2eim_K* 2ein_K* 2occ_K* 2ybb_V* 2zxw_K* 3abk_K* 3abl_K* 3abm_K* 3ag1_K* 3ag2_K* ...
Probab=7.32 E-value=3.7e+02 Score=16.67 Aligned_cols=21 Identities=19% Similarity=0.482 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 032718 11 GPGVAGAVFGAGWWFWIDAVV 31 (135)
Q Consensus 11 ~~~~AGaLF~~gwWi~iDa~v 31 (135)
+..++|+.|.++-|.+.=..+
T Consensus 16 ~~L~~Ga~FC~a~W~y~~TQ~ 36 (56)
T 1v54_K 16 AVLASGATFCVAVWVYMATQI 36 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred eeeecchhhhHhhHhhhheee
Confidence 457899999999999887555
No 9
>3o59_X DNA polymerase II large subunit; alpha helical structure, transferase; HET: DNA; 2.20A {Pyrococcus horikoshii}
Probab=6.96 E-value=1.1e+02 Score=25.01 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhhhcccc
Q 032718 86 SFVSLAASVGLLIQDSLV 103 (135)
Q Consensus 86 ~fggl~~s~~ili~~yv~ 103 (135)
++||-+.|+.+|+++|+-
T Consensus 152 SAGGTAqALSVLvaDyvR 169 (300)
T 3o59_X 152 SSGGTAQALSVLVGDYVR 169 (300)
T ss_dssp GSCHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHH
Confidence 689999999999999984
No 10
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=6.14 E-value=3.7e+02 Score=13.95 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHH
Q 032718 9 IFGPGVAGAVFGA 21 (135)
Q Consensus 9 ~~~~~~AGaLF~~ 21 (135)
.+++.++|.+|++
T Consensus 7 i~s~ai~Gi~f~l 19 (26)
T 1bts_A 7 LISTAVQGILFAL 19 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4677888888875
Done!