Query 032718
Match_columns 135
No_of_seqs 103 out of 184
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 07:46:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032718.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032718hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fftc_ f.25.1.1 (C:) Cytochro 31.1 21 0.0015 24.4 3.6 21 77-97 11-32 (185)
2 d1v54k_ f.23.5.1 (K:) Mitochon 8.5 1.5E+02 0.011 16.6 2.8 21 11-31 11-31 (49)
3 d2axtt1 f.23.34.1 (T:1-30) Pho 5.7 1.7E+02 0.013 14.4 1.9 15 81-95 4-18 (30)
4 d1nekd_ f.21.2.2 (D:) Succinat 5.6 1.9E+02 0.014 17.7 2.6 32 74-105 54-85 (113)
5 d2r6gf1 e.70.1.1 (F:13-260) Ma 4.0 2.8E+02 0.021 19.7 2.9 53 6-58 10-72 (248)
6 d3cx5i1 f.23.14.1 (I:4-58) Sub 3.4 2.8E+02 0.021 15.5 1.9 13 9-21 14-26 (55)
7 d1ppjw_ f.23.14.1 (W:) Subunit 3.3 2.9E+02 0.021 15.8 1.9 13 9-21 20-32 (62)
8 d1v54d_ f.23.1.1 (D:) Mitochon 3.2 4.4E+02 0.032 17.3 3.1 25 81-105 79-103 (144)
9 d2hgsa1 c.30.1.4 (A:202-303) E 2.8 1.8E+02 0.013 18.3 0.5 12 68-79 74-85 (102)
10 d1edza1 c.2.1.7 (A:149-319) Me 2.6 2.3E+02 0.017 18.9 0.9 17 43-60 146-162 (171)
No 1
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=31.14 E-value=21 Score=24.43 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=14.8
Q ss_pred HHHHHHH-HHHHHHHHHHHHhh
Q 032718 77 LWLFLAY-VVSFVSLAASVGLL 97 (135)
Q Consensus 77 ~~LFigf-~l~fggl~~s~~il 97 (135)
.|+|+.- .+.|+++..+..+.
T Consensus 11 ~w~Fi~se~~~F~~lf~~y~~~ 32 (185)
T d1fftc_ 11 FWIYLMSDCILFSILFATYAVL 32 (185)
T ss_dssp HHTTHHHHTTHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666655 68899998886554
No 2
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.51 E-value=1.5e+02 Score=16.56 Aligned_cols=21 Identities=19% Similarity=0.482 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 032718 11 GPGVAGAVFGAGWWFWIDAVV 31 (135)
Q Consensus 11 ~~~~AGaLF~~gwWi~iDa~v 31 (135)
+..++|+.|.++-|.+.=...
T Consensus 11 ~vL~~Ga~fc~avW~yv~TQ~ 31 (49)
T d1v54k_ 11 AVLASGATFCVAVWVYMATQI 31 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEecccchhhhhhhheeeee
Confidence 457899999999999876554
No 3
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.67 E-value=1.7e+02 Score=14.42 Aligned_cols=15 Identities=27% Similarity=0.385 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHH
Q 032718 81 LAYVVSFVSLAASVG 95 (135)
Q Consensus 81 igf~l~fggl~~s~~ 95 (135)
+.+++.|++++|-..
T Consensus 4 i~yv~ifac~i~lff 18 (30)
T d2axtt1 4 ITYVFIFACIIALFF 18 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHH
Confidence 456777888776543
No 4
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=5.64 E-value=1.9e+02 Score=17.74 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccccC
Q 032718 74 RLKLWLFLAYVVSFVSLAASVGLLIQDSLVKT 105 (135)
Q Consensus 74 ~AR~~LFigf~l~fggl~~s~~ili~~yv~~~ 105 (135)
--|+.+.+-+..++-=---.++..+.||+.++
T Consensus 54 ~~~il~~l~l~~~~~H~~lGl~~IieDYi~~~ 85 (113)
T d1nekd_ 54 FTKVFTLLALFSILIHAWIGMWQVLTDYVKPL 85 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhHHHhcCCh
Confidence 34444444444444333447888899998764
No 5
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=4.05 E-value=2.8e+02 Score=19.66 Aligned_cols=53 Identities=11% Similarity=0.187 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh----------ccCccccccchhhHHHHHHHHHHHhcc
Q 032718 6 LWAIFGPGVAGAVFGAGWWFWIDAVV----------CSSVKVSFVHYLPGIFASLAALMFNCV 58 (135)
Q Consensus 6 ~~~~~~~~~AGaLF~~gwWi~iDa~v----------~~~~~~~f~~~ipgI~stlgm~miN~V 58 (135)
+=++++.|..-.+++-+-|.+.-..+ .++..++..|-+||+.--+.+.+.=.+
T Consensus 10 l~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~Fvi~Pi~ 72 (248)
T d2r6gf1 10 LLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVLFPLV 72 (248)
T ss_dssp HHHHHHHHTHHHHHGGGCHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHcchHHHHHHHHHHHHheEEEEEccCccceehhhhHHHHHHHHHHHhhe
Confidence 33566677777777777776655221 256777888899999887777665433
No 6
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.39 E-value=2.8e+02 Score=15.50 Aligned_cols=13 Identities=31% Similarity=0.248 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHH
Q 032718 9 IFGPGVAGAVFGA 21 (135)
Q Consensus 9 ~~~~~~AGaLF~~ 21 (135)
-++.+++||.++-
T Consensus 14 ~~~tI~~gAf~fe 26 (55)
T d3cx5i1 14 FVGTIFAGAFVFQ 26 (55)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3567888887764
No 7
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.27 E-value=2.9e+02 Score=15.85 Aligned_cols=13 Identities=31% Similarity=0.156 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHH
Q 032718 9 IFGPGVAGAVFGA 21 (135)
Q Consensus 9 ~~~~~~AGaLF~~ 21 (135)
-++.+++||+|+-
T Consensus 20 f~~tI~~gAf~fE 32 (62)
T d1ppjw_ 20 FALTIVVGALFFE 32 (62)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3566788887765
No 8
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.21 E-value=4.4e+02 Score=17.33 Aligned_cols=25 Identities=8% Similarity=0.121 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccC
Q 032718 81 LAYVVSFVSLAASVGLLIQDSLVKT 105 (135)
Q Consensus 81 igf~l~fggl~~s~~ili~~yv~~~ 105 (135)
+|-++.+-|+.+.+.++.-.|+.+.
T Consensus 79 ~g~~~~~i~~s~~i~~~~r~~v~p~ 103 (144)
T d1v54d_ 79 VGAAMFFIGFTALLLIWEKHYVYGP 103 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3445555666666666667777554
No 9
>d2hgsa1 c.30.1.4 (A:202-303) Eukaryotic glutathione synthetase, substrate-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.80 E-value=1.8e+02 Score=18.30 Aligned_cols=12 Identities=33% Similarity=0.792 Sum_probs=8.2
Q ss_pred CCCchhHHHHHH
Q 032718 68 YEEGEWRLKLWL 79 (135)
Q Consensus 68 ~~~~~~~AR~~L 79 (135)
|++..|.||+.+
T Consensus 74 Y~~~~W~aRl~l 85 (102)
T d2hgsa1 74 YSLQNWEARLLL 85 (102)
T ss_dssp CCHHHHHHHHHH
T ss_pred CChhhHHHHHHH
Confidence 434469999865
No 10
>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.56 E-value=2.3e+02 Score=18.94 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHhcccC
Q 032718 43 LPGIFASLAALMFNCVRK 60 (135)
Q Consensus 43 ipgI~stlgm~miN~V~~ 60 (135)
.||=. |++|+|-|.+..
T Consensus 146 VPGGV-TvamLl~N~v~a 162 (171)
T d1edza1 146 MTGKV-TIAMLLRNMLRL 162 (171)
T ss_dssp CCHHH-HHHHHHHHHHHH
T ss_pred CCCHH-HHHHHHHHHHHH
Confidence 46665 999999998863
Done!