BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032720
(135 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F1SRI0|TPPC2_PIG Trafficking protein particle complex subunit 2 OS=Sus scrofa
GN=TRAPPC2 PE=2 SV=2
Length = 140
Score = 142 bits (359), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 96/138 (69%), Gaps = 3/138 (2%)
Query: 1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
M+ + F+IV ++ P++E E G A ++D L+QFI HAALD+V + W ++ M+
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 58 LKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSR 117
LK +D+FN+ VS +VTAGH RF++LHD R +DGIK+FF +V++LYIK +NP Y P S
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120
Query: 118 ITSSHFDTKVRALARKYL 135
I SS FD KV+ L +K+L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138
>sp|Q3T0F2|TPPC2_BOVIN Trafficking protein particle complex subunit 2 OS=Bos taurus
GN=TRAPPC2 PE=2 SV=1
Length = 140
Score = 142 bits (359), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 96/138 (69%), Gaps = 3/138 (2%)
Query: 1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
M+ + F+IV ++ P++E E G A ++D L+QFI HAALD+V + W ++ M+
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 58 LKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSR 117
LK +D+FN+ VS +VTAGH RF++LHD R +DGIK+FF +V++LYIK +NP Y P S
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120
Query: 118 ITSSHFDTKVRALARKYL 135
I SS FD KV+ L +K+L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138
>sp|Q9CQP2|TPPC2_MOUSE Trafficking protein particle complex subunit 2 OS=Mus musculus
GN=Trappc2 PE=1 SV=1
Length = 140
Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 96/138 (69%), Gaps = 3/138 (2%)
Query: 1 MATTACFIIVSRNEIPIYEAEV---GSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
M+ + F+IV ++ P++E E G A ++D L+QFI HAALD+V + W ++ M+
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 58 LKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSR 117
LK +D+FN+ VS +VTAGH RF++LHD R +DGIK+FF +V++LYIK +NP Y P S
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120
Query: 118 ITSSHFDTKVRALARKYL 135
I SS FD KV+ L +K+L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138
>sp|Q5RES6|TPPC2_PONAB Trafficking protein particle complex subunit 2 OS=Pongo abelii
GN=TRAPPC2 PE=2 SV=1
Length = 140
Score = 142 bits (358), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 96/138 (69%), Gaps = 3/138 (2%)
Query: 1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
M+ + F+IV ++ P++E E G A ++D L+QFI HAALD+V + W ++ M+
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 58 LKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSR 117
LK +D+FN+ VS +VTAGH RF++LHD R +DGIK+FF +V++LYIK +NP Y P S
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSP 120
Query: 118 ITSSHFDTKVRALARKYL 135
I SS FD KV+ L +K+L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138
>sp|E2QV03|TPPC2_CANFA Trafficking protein particle complex subunit 2 OS=Canis familiaris
GN=TRAPPC2 PE=3 SV=1
Length = 140
Score = 142 bits (358), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 96/138 (69%), Gaps = 3/138 (2%)
Query: 1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
M+ + F+IV ++ P++E E G A ++D L+QFI HAALD+V + W ++ M+
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 58 LKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSR 117
LK +D+FN+ VS +VTAGH RF++LHD R +DGIK+FF +V++LYIK +NP Y P S
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120
Query: 118 ITSSHFDTKVRALARKYL 135
I SS FD KV+ L +K+L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138
>sp|P0DI82|TPC2B_HUMAN Trafficking protein particle complex subunit 2 protein TRAPPC2P1
OS=Homo sapiens GN=TRAPPC2P1 PE=1 SV=1
Length = 140
Score = 142 bits (357), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 96/138 (69%), Gaps = 3/138 (2%)
Query: 1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
M+ + F+IV ++ P++E E G A ++D L+QFI HAALD+V + W ++ M+
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 58 LKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSR 117
LK +D+FN+ VS +VTAGH RF++LHD R +DGIK+FF +V++LYIK +NP Y P S
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSP 120
Query: 118 ITSSHFDTKVRALARKYL 135
I SS FD KV+ L +K+L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138
>sp|P0DI81|TPC2A_HUMAN Trafficking protein particle complex subunit 2 OS=Homo sapiens
GN=TRAPPC2 PE=1 SV=1
Length = 140
Score = 142 bits (357), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 96/138 (69%), Gaps = 3/138 (2%)
Query: 1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
M+ + F+IV ++ P++E E G A ++D L+QFI HAALD+V + W ++ M+
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 58 LKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSR 117
LK +D+FN+ VS +VTAGH RF++LHD R +DGIK+FF +V++LYIK +NP Y P S
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSP 120
Query: 118 ITSSHFDTKVRALARKYL 135
I SS FD KV+ L +K+L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138
>sp|Q54RV6|TPPC2_DICDI Trafficking protein particle complex subunit 2 OS=Dictyostelium
discoideum GN=trappc2 PE=3 SV=1
Length = 133
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 94/133 (70%), Gaps = 1/133 (0%)
Query: 3 TTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAID 62
+T F+I+ +N+ P+YE E V++++ L Q+I H +LDIV++ W ++ M+LK ID
Sbjct: 2 STFTFLIIGKNDNPLYEIEFPITVQKKETYVL-QYIAHGSLDIVEEHVWKSNNMYLKIID 60
Query: 63 RFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITSSH 122
+FN + +S +VTAGH +F+LLH+ +++D IK+FF EVH+LY+KILLNP Y ITS+
Sbjct: 61 KFNKVQISSFVTAGHIKFLLLHEKKDEDAIKNFFVEVHDLYLKILLNPFYEYNKPITSTA 120
Query: 123 FDTKVRALARKYL 135
FD KVR + KY
Sbjct: 121 FDAKVRKIGTKYF 133
>sp|Q9USZ5|TRS20_SCHPO Transport protein particle 20 kDa subunit OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=trs20 PE=3 SV=1
Length = 136
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 94/135 (69%), Gaps = 3/135 (2%)
Query: 4 TACFIIVSRNEIPIYEAEVGSAVKRED---AAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
TA I+ + P+YE E+G ++ D + L+QFI+H++LDIV L WT++A ++K
Sbjct: 2 TAYAAIIGTKDNPVYELEMGPINEKLDRSLNSHLNQFIVHSSLDIVDQLQWTSNAFYMKT 61
Query: 61 IDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITS 120
ID+F+++ +S YVT + RFMLLH +++ D IK FFQE+HELYIK L++P Y P I S
Sbjct: 62 IDQFHEMYISAYVTPSNMRFMLLHQNQSADNIKLFFQELHELYIKTLMSPFYQPNQPIRS 121
Query: 121 SHFDTKVRALARKYL 135
FD KVR++AR+YL
Sbjct: 122 QAFDLKVRSIARRYL 136
>sp|D3ZVF4|TPPC2_RAT Trafficking protein particle complex subunit 2 OS=Rattus norvegicus
GN=Trappc2 PE=3 SV=1
Length = 140
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 94/138 (68%), Gaps = 3/138 (2%)
Query: 1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
M+ + F+IV ++ P++E E G +++ L+QFI HAALD+V + W ++ M+
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPAGKTESKDEHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 58 LKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSR 117
LK +D+FN+ VS +VTAGH R ++LHD R +DGIK+FF +V++LYIK +NP Y P S
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHMRLIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120
Query: 118 ITSSHFDTKVRALARKYL 135
I S+ F+ KV+ L +K+L
Sbjct: 121 IRSTAFERKVQFLGKKHL 138
>sp|Q28IG8|TPPC2_XENTR Trafficking protein particle complex subunit 2 OS=Xenopus
tropicalis GN=trappc2 PE=2 SV=1
Length = 140
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 93/138 (67%), Gaps = 3/138 (2%)
Query: 1 MATTACFIIVSRNEIPIYEAEV---GSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
M+ + F+IV ++ P++E E G ++D L+QFI HAALD+V + W ++ M+
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPQGKTESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 58 LKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSR 117
LK +D+FN+ VS +VTAGH RF++LHD R +DGIK+FF E ++LYIK +NP Y S
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFNEAYDLYIKFAMNPFYEINSP 120
Query: 118 ITSSHFDTKVRALARKYL 135
+ S+ FD K++ L +K+L
Sbjct: 121 LRSTAFDRKIQFLGKKHL 138
>sp|Q08CN0|TPPC2_DANRE Trafficking protein particle complex subunit 2 OS=Danio rerio
GN=trappc2 PE=2 SV=1
Length = 140
Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 95/138 (68%), Gaps = 3/138 (2%)
Query: 1 MATTACFIIVSRNEIPIYEAEV---GSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
M+ + F++V ++ P++E E G A ++D L+QFI HAALD+V + W ++ M+
Sbjct: 1 MSGSFYFVMVGHHDNPVFELEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 58 LKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSR 117
LK +D+FN+ VS +VTAGH RF++LHD R +DGIK+FF +V++LY+K +NP Y +
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFNDVYDLYVKFAMNPFYEVNAP 120
Query: 118 ITSSHFDTKVRALARKYL 135
I S+ F+ KV+ L +K+L
Sbjct: 121 IRSTAFERKVQFLGKKHL 138
>sp|Q9VUZ1|TPPC2_DROME Probable trafficking protein particle complex subunit 2
OS=Drosophila melanogaster GN=CG5161 PE=2 SV=2
Length = 139
Score = 129 bits (324), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 88/136 (64%), Gaps = 3/136 (2%)
Query: 3 TTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLK 59
+T F+IV +N+ PIYE E V +++ED L QFI HAALD+V + W T+ M LK
Sbjct: 2 STYYFVIVGQNDNPIYEKEFSTVNKELRKEDHRHLTQFIAHAALDLVDEHKWKTANMQLK 61
Query: 60 AIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRIT 119
+IDRFN VS ++TA RF+++HD++ND+GIK+FF E+++ YIK +N Y + I
Sbjct: 62 SIDRFNQWFVSAFITASQIRFIIVHDNKNDEGIKNFFNEMYDTYIKNSMNAFYRINTPIK 121
Query: 120 SSHFDTKVRALARKYL 135
S F+ K RKYL
Sbjct: 122 SPMFEKKSEIFGRKYL 137
>sp|Q5ZKP4|TPPC2_CHICK Trafficking protein particle complex subunit 2 OS=Gallus gallus
GN=TRAPPC2 PE=2 SV=2
Length = 140
Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 91/138 (65%), Gaps = 3/138 (2%)
Query: 1 MATTACFIIVSRNEIPIYEAEV---GSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
M+ + F+IV ++ P++E E G A ++D L+QFI HAALD+V + W ++ M+
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 58 LKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSR 117
LK +D+FN+ VS + H RF++LHD R +DGIK+FF +V++LYIK +NP Y S
Sbjct: 61 LKTVDKFNEWFVSAFAFVLHMRFIMLHDVRQEDGIKNFFNDVYDLYIKFAMNPFYELNSP 120
Query: 118 ITSSHFDTKVRALARKYL 135
I SS F+ KV+ L +K+L
Sbjct: 121 IRSSAFERKVQFLGKKHL 138
>sp|A7RVK7|TPPC2_NEMVE Probable trafficking protein particle complex subunit 2
OS=Nematostella vectensis GN=v1g94938 PE=3 SV=1
Length = 153
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Query: 1 MATTACFIIVSRNEIPIYEAEVGSAVKRE--DAAQLHQFILHAALDIVQDLAWTTSAMFL 58
M F IV + P+YE E +K + D L+QFI+HAALD+V + W T+ M+L
Sbjct: 1 MLGNYYFAIVGHYDNPVYEKEFNQQMKMDSNDHRHLNQFIVHAALDLVDESMWGTTGMYL 60
Query: 59 KAIDRFNDLVVSVYVTA--------------GHTRFMLLHDSRNDDGIKSFFQEVHELYI 104
K++D+FN+ VS + RFM+LHD +NDDGIK+FF +V+E +I
Sbjct: 61 KSVDKFNEWFVSAFDPPLSWIIDPQFFLDLTSWMRFMMLHDVKNDDGIKNFFSDVYETFI 120
Query: 105 KILLNPLYLPGSRITSSHFDTKVRALARKYL 135
K+L+NP Y S+I S++FD KV A+K++
Sbjct: 121 KVLMNPFYEINSKIKSANFDKKVLLAAKKHI 151
>sp|O02173|TPPC2_CAEEL Probable trafficking protein particle complex subunit 2
OS=Caenorhabditis elegans GN=sedl-1 PE=1 SV=1
Length = 141
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 79/133 (59%), Gaps = 4/133 (3%)
Query: 7 FIIVSRNEIPIYEAEVGSAVKR----EDAAQLHQFILHAALDIVQDLAWTTSAMFLKAID 62
F I+ + PI+E + K+ E L+ +I HAALDIV + A TTS M+LK +D
Sbjct: 8 FAIIGHCDQPIFEMDFPVGEKKTKESEGTRHLNHYIGHAALDIVDEHALTTSQMYLKMVD 67
Query: 63 RFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITSSH 122
+FN+ VS +VTA RF++LH R D+GIK FFQE++E YIK +NP Y I S
Sbjct: 68 KFNEWYVSAFVTASRIRFIMLHTHRADEGIKQFFQEMYETYIKHAMNPFYEIDDVIESPA 127
Query: 123 FDTKVRALARKYL 135
F+ K RKYL
Sbjct: 128 FEQKATLYGRKYL 140
>sp|P38334|TRS20_YEAST Trafficking protein particle complex subunit 20 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TRS20 PE=1
SV=1
Length = 175
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 40/169 (23%)
Query: 7 FIIVSRNEIPIYEAEVGSAVKRE----DAAQLHQFILHAALDIVQDLAW----------- 51
F I+ + + P+YE E +A + D +L+ FILHA+LDIV+DL W
Sbjct: 5 FAIIGKKDNPVYEIEFTNAENPQGFPQDLKELNPFILHASLDIVEDLQWQINPTSQLNGN 64
Query: 52 ------------------TTSAMFLKAIDRFNDLVVSVYVTAGHTRFMLLHDSR------ 87
T +L +D F L ++ Y++ +F+++H +
Sbjct: 65 GGNGSNGGGGFLRSRAVNNTDNCYLGKVDHFYGLAITAYISYSGMKFVMIHGNSANSSVV 124
Query: 88 -NDDGIKSFFQEVHELYIKILLNPLYLPGSRITSSHFDTKVRALARKYL 135
+D+ ++SF+QEVHELY+K L+NP Y I S FD++VR LARK+L
Sbjct: 125 IDDNNMRSFYQEVHELYVKTLMNPFYKITDPIRSPAFDSRVRTLARKHL 173
>sp|B5FXJ6|TPC2L_TAEGU Trafficking protein particle complex subunit 2-like protein
OS=Taeniopygia guttata GN=TRAPPC2L PE=2 SV=1
Length = 139
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 22/139 (15%)
Query: 6 CFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDR-- 63
C ++++ P+Y V + E+ + H + +H +LD+V + SAM +D+
Sbjct: 4 CIAVIAKENYPLYIRSVPT----ENELKFH-YTVHTSLDVVDE---KISAMGKALVDQRE 55
Query: 64 --------FNDLVVSVYVTAGHTRFMLLHDSRN----DDGIKSFFQEVHELYIKILLNPL 111
D V YVT +F+++ DS N D+ I+S F+++H Y I+ NP
Sbjct: 56 LYLGLLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDIMCNPF 115
Query: 112 YLPGSRITSSHFDTKVRAL 130
Y PG RI S FDT V ++
Sbjct: 116 YNPGDRIHSRAFDTMVNSM 134
>sp|B2RYU6|TPC2L_RAT Trafficking protein particle complex subunit 2-like protein
OS=Rattus norvegicus GN=Trappc2l PE=2 SV=1
Length = 139
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 22/139 (15%)
Query: 6 CFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDR-- 63
C ++++ P+Y + E+ + H +++H +LD+V + SAM +D+
Sbjct: 4 CIAVIAKENYPLYIRSTPT----ENELKFH-YMVHTSLDVVDE---KISAMGKALVDQRE 55
Query: 64 --------FNDLVVSVYVTAGHTRFMLLHDSRN----DDGIKSFFQEVHELYIKILLNPL 111
D V YVT +F+++ DS N D+ I+S F+++H Y ++ NP
Sbjct: 56 LYLGLLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPF 115
Query: 112 YLPGSRITSSHFDTKVRAL 130
Y PG RI S FDT V ++
Sbjct: 116 YNPGDRIQSRAFDTMVTSM 134
>sp|Q9JME7|TPC2L_MOUSE Trafficking protein particle complex subunit 2-like protein OS=Mus
musculus GN=Trappc2l PE=2 SV=1
Length = 139
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 22/139 (15%)
Query: 6 CFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDR-- 63
C ++++ P+Y + E + H +++H +LD+V + SAM +D+
Sbjct: 4 CIAVIAKENYPLYIRSTPT----ESELKFH-YMVHTSLDVVDE---KISAMGKALVDQRE 55
Query: 64 --------FNDLVVSVYVTAGHTRFMLLHDSRN----DDGIKSFFQEVHELYIKILLNPL 111
D V YVT +F+++ DS N D+ I+S F+++H Y ++ NP
Sbjct: 56 LYLGLLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPF 115
Query: 112 YLPGSRITSSHFDTKVRAL 130
Y PG RI S FDT V ++
Sbjct: 116 YNPGDRIQSRAFDTMVTSM 134
>sp|Q54CU7|TPC2L_DICDI Trafficking protein particle complex subunit 2-like protein
OS=Dictyostelium discoideum GN=trappc2l PE=3 SV=1
Length = 140
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 10/139 (7%)
Query: 1 MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTT----SAM 56
M C IV + P++ + S++ E+ +LH +I+H +LDI++D + S M
Sbjct: 1 MKKIVCVAIVGKGNNPLFIQDFSSSITDENKLKLH-YIVHCSLDIIEDKPGSNKKLPSDM 59
Query: 57 FLKAIDRFNDLVVSVYVTAGHTRFMLL----HDSRNDDGIKSFFQEVHELYIKILLNPLY 112
+L + D V Y+T +F+++ D ++ D +K FF+ + L+I NP Y
Sbjct: 60 YLGLLYPTEDYKVYGYLTNTKIKFIIVVLDTSDIKDSD-LKLFFKRLQTLFINTTSNPFY 118
Query: 113 LPGSRITSSHFDTKVRALA 131
P S++ S F +V L
Sbjct: 119 KPNSKVESKKFLQEVTNLV 137
>sp|A6H7F7|TPC2L_BOVIN Trafficking protein particle complex subunit 2-like protein OS=Bos
taurus GN=TRAPPC2L PE=2 SV=1
Length = 139
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 22/139 (15%)
Query: 6 CFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDR-- 63
C ++++ P+Y ++ E+ + H +++H +LD+V + SAM +D+
Sbjct: 4 CVAVIAKENYPLYI----RSIPTENELKFH-YMVHTSLDVVDE---KISAMGKALVDQRE 55
Query: 64 --------FNDLVVSVYVTAGHTRFMLLHDSRN----DDGIKSFFQEVHELYIKILLNPL 111
D V YVT +F+++ DS N D+ I+S F+++H Y ++ NP
Sbjct: 56 LYLGLLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPF 115
Query: 112 YLPGSRITSSHFDTKVRAL 130
Y PG RI S FD V ++
Sbjct: 116 YNPGDRIQSRAFDGMVTSM 134
>sp|B5XGE7|TPC2L_SALSA Trafficking protein particle complex subunit 2-like protein
OS=Salmo salar GN=trappc2l PE=2 SV=1
Length = 139
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 70/136 (51%), Gaps = 16/136 (11%)
Query: 6 CFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQD-LAWTTSAM------FL 58
C ++++ P+Y +V ++ + H + +H +LD+V++ ++ AM +L
Sbjct: 4 CIAVIAKENYPLY----IRSVPVQNELKFH-YTVHTSLDVVEEKISAVGKAMADQRELYL 58
Query: 59 KAIDRFNDLVVSVYVTAGHTRFMLLHDSRN----DDGIKSFFQEVHELYIKILLNPLYLP 114
+ D V YVT +F+++ DS N D+ I+S F+++H + ++ NP Y P
Sbjct: 59 GLLYPTEDYKVYGYVTNSKVKFVIVVDSSNTSLRDNEIRSMFRKLHNSFTDVMCNPFYNP 118
Query: 115 GSRITSSHFDTKVRAL 130
G I S FD+ V A+
Sbjct: 119 GDTIQSKAFDSMVSAM 134
>sp|Q9UL33|TPC2L_HUMAN Trafficking protein particle complex subunit 2-like protein OS=Homo
sapiens GN=TRAPPC2L PE=1 SV=1
Length = 140
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 23/140 (16%)
Query: 6 CFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDR-- 63
C ++++ P+Y + E+ + H +++H +LD+V + SAM +D+
Sbjct: 4 CIAVIAKENYPLYIRSTPT----ENELKFH-YMVHTSLDVVDE---KISAMGKALVDQRE 55
Query: 64 --------FNDLVVSVYVTAGHTRFMLLHDSRN----DDGIKSFFQEVHELYIKILLNPL 111
D V YVT +F+++ DS N D+ I+S F+++H Y ++ NP
Sbjct: 56 LYLGLLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPF 115
Query: 112 YLPGSRITSSH-FDTKVRAL 130
Y PG RI SS FD V ++
Sbjct: 116 YNPGDRIQSSRAFDNMVTSM 135
>sp|Q5M8X5|TPC2L_XENTR Trafficking protein particle complex subunit 2-like protein
OS=Xenopus tropicalis GN=trappc2l PE=2 SV=1
Length = 139
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 22/139 (15%)
Query: 6 CFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDR-- 63
C ++++ P+Y + E+ + H + +H +LD+V + SAM +D+
Sbjct: 4 CVAVIAKENYPLYIRSTPT----ENQLKFH-YTVHTSLDVVDE---KISAMGKAVMDQRE 55
Query: 64 --------FNDLVVSVYVTAGHTRFMLLHDSRN----DDGIKSFFQEVHELYIKILLNPL 111
D V YVT +F+++ DS N D+ I+S F+++H Y ++ NP
Sbjct: 56 LYLGLLYPTEDYKVYGYVTNSKVKFVMVVDSSNTSLRDNEIRSMFRKLHNSYTDVMCNPF 115
Query: 112 YLPGSRITSSHFDTKVRAL 130
Y PG I S FD V ++
Sbjct: 116 YNPGDPIQSRAFDNTVTSM 134
>sp|Q5RBK9|TPC2L_PONAB Trafficking protein particle complex subunit 2-like protein
OS=Pongo abelii GN=TRAPPC2L PE=3 SV=1
Length = 109
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 24/125 (19%)
Query: 6 CFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFN 65
C ++++ P+Y + E+ + H +++H +LD+V + SAM +D+
Sbjct: 4 CIAVIAKENYPLYIRSTPT----ENKLKFH-YMVHTSLDVVDE---KISAMGKALVDQRE 55
Query: 66 DLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITSSHFDT 125
+ +Y T + F LH+S Y ++ NP Y PG RI S FD
Sbjct: 56 LYLGLLYPTEDYKMFRKLHNS----------------YTDVMCNPFYNPGDRIQSRAFDN 99
Query: 126 KVRAL 130
V ++
Sbjct: 100 MVTSM 104
>sp|A9BAX2|SYT_PROM4 Threonine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9211)
GN=thrS PE=3 SV=1
Length = 638
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 11 SRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKAIDRFNDLV 68
S ++PI AE GS + E + LH L + VQD A + T A + F DLV
Sbjct: 346 SYRDLPIRLAEFGSCHRNEPSGALHG--LMRVRNFVQDDAHIFCTEAQVQSEVSNFIDLV 403
Query: 69 VSVYVTAGHTRFMLLHDSRNDDGIKS-FFQEVHELYIKILLNPL-----YLPGS 116
VY + G ++ +R + S F + E + LN YLPG
Sbjct: 404 FEVYKSFGFNEIIIKLSTRPKKRVGSEFIWDKSEKALSEALNSKGLDWSYLPGE 457
>sp|Q7V8D2|SYT_PROMM Threonine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9313)
GN=thrS PE=3 SV=1
Length = 640
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 11 SRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKAIDRFNDLV 68
S ++PI AE GS ++ E + LH L + VQD A + T + + +F DLV
Sbjct: 346 SYRDLPIRLAEFGSCLRNEPSGSLHG--LMRVRNFVQDDAHIFCTELQVQEEVSKFIDLV 403
Query: 69 VSVYVTAGHTRFMLLHDSRNDDGIKS 94
VY + G ++ +R + + S
Sbjct: 404 FEVYRSFGFDSVLIKLSTRPEKRVGS 429
>sp|A2CAU4|SYT_PROM3 Threonine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9303)
GN=thrS PE=3 SV=1
Length = 640
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 11 SRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKAIDRFNDLV 68
S ++PI AE GS ++ E + LH L + VQD A + T + + +F DLV
Sbjct: 346 SYRDLPIRLAEFGSCLRNEPSGSLHG--LMRVRNFVQDDAHIFCTELQVQEEVSKFIDLV 403
Query: 69 VSVYVTAGHTRFMLLHDSRNDDGIKS 94
+Y + G ++ +R + + S
Sbjct: 404 FEIYRSFGFDSVLIKLSTRPEKRVGS 429
>sp|Q7VBM8|SYT_PROMA Threonine--tRNA ligase OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=thrS PE=3 SV=1
Length = 643
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 14/116 (12%)
Query: 11 SRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKAIDRFNDLV 68
S ++PI AE GS + E + LH L + VQD A + T A + +F DLV
Sbjct: 346 SYRDLPIRLAEFGSCHRNEPSGALHG--LMRVRNFVQDDAHIFCTEAQIQDEVSKFIDLV 403
Query: 69 VSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPL--------YLPGS 116
VY G ++ +R + S E+ + K L + L YLPG
Sbjct: 404 FDVYKAFGFESIIIKLSTRPTKRVGS--DEIWDKSEKALADALNIKKFEWSYLPGE 457
>sp|Q7V287|SYT_PROMP Threonine--tRNA ligase OS=Prochlorococcus marinus subsp. pastoris
(strain CCMP1986 / MED4) GN=thrS PE=3 SV=1
Length = 638
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 6/103 (5%)
Query: 11 SRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKAIDRFNDLV 68
S ++PI AE GS + E + LH L + QD A + T + F DLV
Sbjct: 346 SYKDLPIRLAEFGSCHRNEPSGALHG--LMRVRNFTQDDAHIFCTEEQIQAEVSTFIDLV 403
Query: 69 VSVYVTAGHTRFMLLHDSRNDD--GIKSFFQEVHELYIKILLN 109
VY T G ++ +R + G ++ + + E +K L N
Sbjct: 404 FEVYKTFGFDEIIIKLSTRPEKRVGSENIWDKSEEALMKALDN 446
>sp|A2BQ78|SYT_PROMS Threonine--tRNA ligase OS=Prochlorococcus marinus (strain AS9601)
GN=thrS PE=3 SV=1
Length = 638
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 11 SRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKAIDRFNDLV 68
S ++PI AE GS + E + LH L + QD A + T + + F DLV
Sbjct: 346 SYKDLPIRLAEFGSCHRNEPSGALHG--LMRVRNFTQDDAHIFCTEEQIQEEVSTFIDLV 403
Query: 69 VSVYVTAGHTRFMLLHDSRNDDGIKS 94
VY T G ++ +R + + S
Sbjct: 404 FEVYKTFGFDEIIIKLSTRPEKRVGS 429
>sp|A3PBX1|SYT_PROM0 Threonine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9301)
GN=thrS PE=3 SV=1
Length = 638
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 11 SRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKAIDRFNDLV 68
S ++PI AE GS + E + LH L + QD A + T + + F DLV
Sbjct: 346 SYKDLPIRLAEFGSCHRNEPSGALHG--LMRVRNFTQDDAHIFCTEEQIQEEVSTFIDLV 403
Query: 69 VSVYVTAGHTRFMLLHDSRNDDGIKS 94
VY T G ++ +R + + S
Sbjct: 404 FEVYKTFGFDEIIIKLSTRPEKRVGS 429
>sp|Q9P7B8|ARB1_SCHPO Argonaute-binding protein 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=arb1 PE=1 SV=1
Length = 399
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 62 DRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITSS 121
DR +D V+ ++ + +T+FM + DGI F + YI+ L P YL G +
Sbjct: 249 DRTSDSSVN-FIESNNTKFMPNDELFEPDGISRFSTQQARDYIQRTLGPRYLTGKVVEQE 307
Query: 122 HFDTKV 127
+ K+
Sbjct: 308 YLTVKL 313
>sp|Q46LV3|SYT_PROMT Threonine--tRNA ligase OS=Prochlorococcus marinus (strain NATL2A)
GN=thrS PE=3 SV=1
Length = 641
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 11 SRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKAIDRFNDLV 68
S ++PI +E GS + E + LH L + VQD A + T + + F DLV
Sbjct: 346 SYRDLPIRLSEFGSCHRNEPSGALHG--LMRVRNFVQDDAHIFCTDEQIQEEVQNFIDLV 403
Query: 69 VSVYVTAGHTRFMLLHDSR 87
VY T G ++ +R
Sbjct: 404 FEVYKTFGFDSILIKLSTR 422
>sp|A8G3W3|SYT_PROM2 Threonine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9215)
GN=thrS PE=3 SV=1
Length = 638
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 11 SRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKAIDRFNDLV 68
S ++PI AE GS + E + LH L + QD A + T + + F DLV
Sbjct: 346 SYKDLPIRLAEFGSCHRNEPSGALHG--LMRVRNFTQDDAHIFCTEEQIQEEVSTFIDLV 403
Query: 69 VSVYVTAGHTRFMLLHDSR 87
VY T G ++ +R
Sbjct: 404 FEVYKTFGFDEIIIKLSTR 422
>sp|A2BVR0|SYT_PROM5 Threonine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9515)
GN=thrS PE=3 SV=1
Length = 638
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 11 SRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKAIDRFNDLV 68
S ++P+ AE GS + E + LH L + QD A + T + + F DLV
Sbjct: 346 SYKDLPLRLAEFGSCHRNEPSGALHG--LMRVRNFTQDDAHIFCTEEQIQEEVSTFIDLV 403
Query: 69 VSVYVTAGHTRFMLLHDSRNDDGIKS 94
VY T G ++ +R + + S
Sbjct: 404 FEVYNTFGFDEIIIKLSTRPEKRVGS 429
>sp|Q54Z25|PLDC_DICDI Phospholipase D C OS=Dictyostelium discoideum GN=pldC PE=3 SV=1
Length = 1640
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 91 GIKSFFQEVHELYIKILLNPLYLP 114
G+KSFF+++H IK++ +P LP
Sbjct: 985 GVKSFFEKMHRRNIKVIRHPHMLP 1008
>sp|Q9SHG5|C72C1_ARATH Cytochrome P450 72C1 OS=Arabidopsis thaliana GN=CYP72C1 PE=2 SV=2
Length = 519
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 78 TRFMLLHDSRND---DGIKSFFQEVHELYIKIL-LNPLYLPGSRITSSHFDTKVRALAR 132
TR ML S D DGIK F + ++ + +L + +Y+PGS+ + F+ ++R R
Sbjct: 206 TRNMLARASFGDSYKDGIKIFEIQQEQIDLGLLAIRAVYIPGSKFLPTKFNRRLRETER 264
>sp|Q1LYM6|KLH38_DANRE Kelch-like protein 38 OS=Danio rerio GN=klhl38 PE=4 SV=1
Length = 583
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 71 VYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELY--IKILLNPLYLPGSRITSSH 122
+Y+ G+TR ++ +D++ + +K + ++ ++ N LY+ G R +SH
Sbjct: 483 IYIVGGYTRRVIAYDTKANKFVKCTNMKERRMHHAATVINNKLYVTGGRFLNSH 536
>sp|A2C155|SYT_PROM1 Threonine--tRNA ligase OS=Prochlorococcus marinus (strain NATL1A)
GN=thrS PE=3 SV=1
Length = 640
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 11 SRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKAIDRFNDLV 68
S ++PI +E GS + E + LH L + VQD + T+ + + F DLV
Sbjct: 346 SYRDLPIRLSEFGSCHRNEPSGALHG--LMRVRNFVQDDGHIFCTNEQIQEEVQSFIDLV 403
Query: 69 VSVYVTAGHTRFMLLHDSRNDDGIKS 94
VY G ++ +R + + S
Sbjct: 404 FEVYKAFGFNSILIKLSTRPEKRVGS 429
>sp|Q8UEL1|SYT_AGRT5 Threonine--tRNA ligase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=thrS PE=3 SV=1
Length = 667
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
Query: 11 SRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKAIDRFNDLV 68
S E+P+ AE G+ + E + LH L QD A + T R NDL+
Sbjct: 360 SYREMPVRLAEFGNVHRYEASGALHG--LMRVRGFTQDDAHVFCTEEQMAAECLRINDLI 417
Query: 69 VSVYVTAGHTRFMLLHDSRNDDGIKS--FFQEVHELYIKILLNPLYLPGSRITSS 121
+SVY G + ++ +R + + S + + +++L G RI +
Sbjct: 418 LSVYEDFGFSEIVVKLSTRPEKRVGSDDLWDRAESVMLEVLKTIEEQSGGRIKTG 472
>sp|Q31BT7|SYT_PROM9 Threonine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9312)
GN=thrS PE=3 SV=1
Length = 638
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 11 SRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKAIDRFNDLV 68
S ++PI AE GS + E + LH L + QD A + + + F DLV
Sbjct: 346 SYKDLPIRLAEFGSCHRNEPSGALHG--LMRVRNFTQDDAHIFCKEEQIQEEVSTFIDLV 403
Query: 69 VSVYVTAGHTRFMLLHDSRNDDGIKS 94
VY T G ++ +R + + S
Sbjct: 404 FEVYKTFGFDEIIIKLSTRPEKRVGS 429
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,850,116
Number of Sequences: 539616
Number of extensions: 1597369
Number of successful extensions: 4892
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 4831
Number of HSP's gapped (non-prelim): 59
length of query: 135
length of database: 191,569,459
effective HSP length: 100
effective length of query: 35
effective length of database: 137,607,859
effective search space: 4816275065
effective search space used: 4816275065
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)