Query 032720
Match_columns 135
No_of_seqs 126 out of 539
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 07:48:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032720.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032720hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j3w_A Sedlin, trafficking pro 100.0 1.6E-46 5.5E-51 269.2 16.9 135 1-135 3-140 (142)
2 2j3t_C Trafficking protein par 100.0 1.8E-38 6E-43 228.2 13.9 131 2-134 1-137 (145)
3 3cue_C Transport protein parti 100.0 5.8E-35 2E-39 212.7 10.9 130 2-134 1-156 (159)
4 3pr6_A Trapp-associated protei 100.0 1.6E-34 5.4E-39 209.7 12.0 113 5-117 11-135 (162)
5 3cue_A Transport protein parti 100.0 2.9E-32 9.9E-37 205.9 16.9 132 2-134 1-218 (219)
6 2j3t_D Trafficking protein par 100.0 4E-33 1.4E-37 211.2 12.1 122 8-134 85-209 (219)
7 2j3t_D Trafficking protein par 93.4 0.067 2.3E-06 40.2 3.6 24 1-25 1-24 (219)
8 1w63_Q Adapter-related protein 93.3 1.4 4.9E-05 30.7 12.1 95 4-109 2-97 (158)
9 3kyq_A YKT6, synaptobrevin hom 93.3 1.7 5.9E-05 31.7 12.3 101 1-107 1-106 (199)
10 2vgl_S AP-2 complex subunit si 92.8 1.5 5.2E-05 29.9 12.1 95 4-109 2-97 (142)
11 2nut_C Vesicle-trafficking pro 89.6 4.4 0.00015 29.1 14.8 74 60-134 53-127 (196)
12 2vgl_M AP-2 complex subunit MU 87.3 8.2 0.00028 31.0 11.1 93 4-109 2-95 (435)
13 4b93_A Vesicle-associated memb 86.1 7.5 0.00026 27.8 11.7 75 59-134 43-118 (189)
14 1w63_M Adaptor-related protein 81.7 4.9 0.00017 32.2 7.4 88 3-107 2-95 (423)
15 2vx8_A Nucleoporin-like protei 81.5 12 0.0004 26.5 9.3 47 60-107 86-133 (169)
16 3tjz_C Coatomer subunit zeta-1 69.8 24 0.00083 24.3 13.1 93 3-107 12-105 (153)
17 2wx3_A MRNA-decapping enzyme 1 68.7 3.4 0.00012 23.8 2.2 16 93-108 28-43 (51)
18 2wx4_A DCP1, decapping protein 60.6 3.4 0.00012 23.2 1.2 15 94-108 27-41 (46)
19 3bua_E HSNM1B, DNA cross-LINK 58.8 2.5 8.6E-05 22.2 0.4 31 101-131 5-35 (36)
20 3bw6_A Synaptobrevin homolog Y 46.2 65 0.0022 21.7 13.8 48 59-106 60-108 (144)
21 1skv_A ORF D-63, hypothetical 33.5 35 0.0012 20.5 2.7 23 89-111 15-37 (69)
22 1ytb_A Protein (tata binding p 30.2 91 0.0031 22.1 5.0 50 54-105 127-176 (180)
23 4afi_A AP-3 complex subunit de 26.2 1.7E+02 0.0058 20.4 12.6 73 60-134 96-170 (173)
24 2jtt_C Calcyclin-binding prote 25.1 27 0.00092 18.3 1.0 13 89-101 5-17 (35)
25 1bl1_A Parathyroid hormone rec 23.5 25 0.00085 18.0 0.6 14 91-104 12-25 (31)
26 3cpt_A Mitogen-activated prote 23.4 1.8E+02 0.0063 19.9 7.5 22 3-24 37-58 (143)
27 2jsx_A Protein NAPD; TAT, proo 22.7 1.3E+02 0.0044 18.9 4.2 36 65-101 30-65 (95)
28 3eik_A Tata-box-binding protei 22.5 1.5E+02 0.0053 21.7 5.1 51 54-106 165-215 (218)
29 1rm1_A Tata-box binding protei 22.1 1.4E+02 0.0048 22.2 4.8 50 54-105 187-236 (240)
30 2z8u_A Tata-box-binding protei 21.3 2.3E+02 0.0077 20.1 6.6 50 54-105 135-184 (188)
No 1
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=100.00 E-value=1.6e-46 Score=269.19 Aligned_cols=135 Identities=48% Similarity=0.854 Sum_probs=125.6
Q ss_pred CCceEEEEEEcCCCCeeEEEecCCCcc---ccchHHHHHHHHHhcchhhhhhhccccccccceeeeecceEEEEEEecCC
Q 032720 1 MATTACFIIVSRNEIPIYEAEVGSAVK---REDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGH 77 (135)
Q Consensus 1 m~~i~~l~Ii~~~~~ply~~~~~~~~~---~~~~~~~~~~~~~~sLD~i~~~~~~~~~~ylg~l~~~~~~~v~~y~T~tg 77 (135)
|++++|++||||+|+|||+++|++.++ .++.++..++++|++||+++++.|.++++|||.++++++|++|||+|+||
T Consensus 3 M~~i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg 82 (142)
T 2j3w_A 3 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGH 82 (142)
T ss_dssp CCCCEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTC
T ss_pred cceEEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCC
Confidence 778999999999999999999986543 23445777899999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCchhHHHHHHHHHHHHHhhhhCCCCCCCCCcCChhHHHHHHHHHHhhC
Q 032720 78 TRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITSSHFDTKVRALARKYL 135 (135)
Q Consensus 78 ~Kfvl~~~~~~~~~i~~~f~~i~~~Y~~~v~NPFy~~~~~I~s~~F~~~v~~~~~~~~ 135 (135)
+|||+++|+++++++|++|++||++|++++|||||++++||+|+.||++|++++++||
T Consensus 83 ~Kfvl~~d~~~~~~i~~~~~~iy~~Y~~~v~NPfy~~~~pI~s~~Fd~~v~~~~~~~l 140 (142)
T 2j3w_A 83 MRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIRSSAFDRKVQFLGKKHL 140 (142)
T ss_dssp CEEEEEESSCCHHHHHHHHHHHHHHHHHHHHSTTCCTTCCCCCHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHHHHhcCCCCCCCCceecHHHHHHHHHHHHHhc
Confidence 9999999985689999999999999999999999999999999999999999999997
No 2
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=100.00 E-value=1.8e-38 Score=228.18 Aligned_cols=131 Identities=13% Similarity=0.158 Sum_probs=108.1
Q ss_pred CceEEEEEEcCCCCeeEEEecCCCc--ccc-chHHHHHHHHHhcchhhhhhhccc-cccccceeeeecceEEEEEEecCC
Q 032720 2 ATTACFIIVSRNEIPIYEAEVGSAV--KRE-DAAQLHQFILHAALDIVQDLAWTT-SAMFLKAIDRFNDLVVSVYVTAGH 77 (135)
Q Consensus 2 ~~i~~l~Ii~~~~~ply~~~~~~~~--~~~-~~~~~~~~~~~~sLD~i~~~~~~~-~~~ylg~l~~~~~~~v~~y~T~tg 77 (135)
++++|++||||+|+|||+++|+.++ +.. +++....+.++.||+.|.+++.+. +..++..+ ++++|++|||+|+||
T Consensus 1 M~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~-~t~~ykl~~~~T~Tg 79 (145)
T 2j3t_C 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSF-QTSRYKLHYYETPTG 79 (145)
T ss_dssp -CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEE-ECSSCEEEEEECTTS
T ss_pred CeEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEE-ecCCEEEEEEEcCCC
Confidence 3589999999999999999997542 211 344333344444777777777654 45677666 699999999999999
Q ss_pred eEEEEEecCCCchhHHHHHHHHH-HHHHhhhh-CCCCCCCCCcCChhHHHHHHHHHHhh
Q 032720 78 TRFMLLHDSRNDDGIKSFFQEVH-ELYIKILL-NPLYLPGSRITSSHFDTKVRALARKY 134 (135)
Q Consensus 78 ~Kfvl~~~~~~~~~i~~~f~~i~-~~Y~~~v~-NPFy~~~~~I~s~~F~~~v~~~~~~~ 134 (135)
+|||+++|++ ++++|++|++|| ++|+|+|+ ||||++|+||+|+.||++|+++++++
T Consensus 80 iKFvl~td~~-~~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~Fd~~v~~~~~~~ 137 (145)
T 2j3t_C 80 IKVVMNTDLG-VGPIRDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVRSL 137 (145)
T ss_dssp CEEEEEECTT-CCCCHHHHHHHHHTTHHHHTTTCTTSCTTSCCCCHHHHHHHHHHHTTS
T ss_pred CEEEEEecCC-cchHHHHHHHHHHHHHHHHHhcCCCCCCCCceecHHHHHHHHHHHHhC
Confidence 9999999975 788999999999 89999876 99999999999999999999999875
No 3
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-35 Score=212.71 Aligned_cols=130 Identities=18% Similarity=0.175 Sum_probs=108.3
Q ss_pred CceEEEEEEcCCCCeeEEEecCCC-----c----cccchHHHHHHHHHhcchhhhhhhcccc--ccccceeeeecceEEE
Q 032720 2 ATTACFIIVSRNEIPIYEAEVGSA-----V----KREDAAQLHQFILHAALDIVQDLAWTTS--AMFLKAIDRFNDLVVS 70 (135)
Q Consensus 2 ~~i~~l~Ii~~~~~ply~~~~~~~-----~----~~~~~~~~~~~~~~~sLD~i~~~~~~~~--~~ylg~l~~~~~~~v~ 70 (135)
++|+||+||||+|+|||+++|..+ + +..+++....+.++.||+.+.+++++.+ +.| ...++++|++|
T Consensus 1 M~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f--~~~~T~~ykl~ 78 (159)
T 3cue_C 1 MGIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDI--RSISTGKYRVH 78 (159)
T ss_dssp CCCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCE--EEEECSSCBEE
T ss_pred CeEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCe--EEEeeCCEEEE
Confidence 358999999999999999999642 1 2234455555666669999999997754 444 55568999999
Q ss_pred EEEecCCeEEEEEecCCCchhHHHHHHHHHH-HHHhhh-hCC-----CCCCC--------CCcCChhHHHHHHHHHHhh
Q 032720 71 VYVTAGHTRFMLLHDSRNDDGIKSFFQEVHE-LYIKIL-LNP-----LYLPG--------SRITSSHFDTKVRALARKY 134 (135)
Q Consensus 71 ~y~T~tg~Kfvl~~~~~~~~~i~~~f~~i~~-~Y~~~v-~NP-----Fy~~~--------~~I~s~~F~~~v~~~~~~~ 134 (135)
||+|+||+|||+++|++ ++++|++|++||+ +|+++| +|| ||+++ +||+|++||++|+++++++
T Consensus 79 ~~eT~TgiKFvl~td~~-~~~i~~~l~~iy~~lYv~yv~kNPl~~~~Fy~~~~~~~~~~~~pI~s~~Fd~~l~~~~~~~ 156 (159)
T 3cue_C 79 TYCTASGLWFVLLSDFK-QQSYTQVLQYIYSHIYVKYVSNNLLSPYDFAENENEMRGQGTRKITNRNFISVLESFLAPM 156 (159)
T ss_dssp EECCSSCCEEEEECCSS-SSCTHHHHHHHHHHHHHHHHHSCTTSCCSCCCSCTTTTTSCCCCCCCHHHHHHHHHHTSCC
T ss_pred EEEeCCCCEEEEEeCCC-cchHHHHHHHHHHHHHHHHHHhCCCccccccccccccccccCcCcccHHHHHHHHHHHHhc
Confidence 99999999999999975 8899999999997 999987 699 99999 9999999999999999875
No 4
>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-34 Score=209.70 Aligned_cols=113 Identities=18% Similarity=0.360 Sum_probs=96.3
Q ss_pred EEEEEEcCCCCeeEEEecCCCccccchHHHHHHHHHhcchhhhhhh--ccccc--cccceeeeecceEEEEEE-ecCCeE
Q 032720 5 ACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSA--MFLKAIDRFNDLVVSVYV-TAGHTR 79 (135)
Q Consensus 5 ~~l~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~~~~~sLD~i~~~~--~~~~~--~ylg~l~~~~~~~v~~y~-T~tg~K 79 (135)
-+++||||+|.|||++.+++.....++.+.+||++|+|||+||+++ |.+.+ +|||.++++++++||||+ |+||+|
T Consensus 11 ~FVaIIg~~n~PLyI~~~~~~~~~~~~~Lk~~fi~hsSLDi~Ee~~~~~~s~~~~~~LglL~~~e~~~VYGy~iTnt~vK 90 (162)
T 3pr6_A 11 CFVSLIDESDKPILIYVPNEAENEMNDVLKYNVLSNISLDYFESALVEWHSLDSKPLLKSIFQLEGVSVFAMLIKQTGLK 90 (162)
T ss_dssp SEEEEECTTSCEEEEECCC-------CHHHHHHHHHHHHHHHHCTTCCCCCSSSSCCCEEEEEETTEEEEEEECTTTCCE
T ss_pred eEEEEECCCCceeEEEeCCCccccccchhHHHHHHHHHHHHHhhhhhhccccccccccceEeecCCeEEEEEEEcCCceE
Confidence 3778999999999999997653334467899999999999999999 76654 689999999999999998 999999
Q ss_pred EEEEecCC-----Cc--hhHHHHHHHHHHHHHhhhhCCCCCCCCC
Q 032720 80 FMLLHDSR-----ND--DGIKSFFQEVHELYIKILLNPLYLPGSR 117 (135)
Q Consensus 80 fvl~~~~~-----~~--~~i~~~f~~i~~~Y~~~v~NPFy~~~~~ 117 (135)
||++++.+ +| ++||+||++||++|++++|||||.+++.
T Consensus 91 fVl~~d~~~~~~~~D~~~~Ik~~F~~vh~~Yvk~l~NPFy~~~d~ 135 (162)
T 3pr6_A 91 IVIGFEQKSLSGADDEFEAINQIFETVRKIYIRVKCNPLLVSGDE 135 (162)
T ss_dssp EEEEEEGGGCCCCHHHHHHHHHHHHHHHHHHHHHHTCTTGGGSCH
T ss_pred EEEEEccCCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCCCch
Confidence 99999863 35 7999999999999999999999999743
No 5
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-32 Score=205.93 Aligned_cols=132 Identities=16% Similarity=0.187 Sum_probs=106.0
Q ss_pred CceEEEEEEcCCCCeeEEEecCCC-ccccchHHHHHHHHHhcchhhhhhhcccc--------------------------
Q 032720 2 ATTACFIIVSRNEIPIYEAEVGSA-VKREDAAQLHQFILHAALDIVQDLAWTTS-------------------------- 54 (135)
Q Consensus 2 ~~i~~l~Ii~~~~~ply~~~~~~~-~~~~~~~~~~~~~~~~sLD~i~~~~~~~~-------------------------- 54 (135)
++|++++||||+|++||.++|... .+..+++.+.-+.+..++..|..++.+..
T Consensus 1 M~i~sl~IiNk~GglIY~r~~~~~~~~l~snd~l~lag~lhsv~ai~~~ltP~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 80 (219)
T 3cue_A 1 MAIETILVINKSGGLIYQRNFTNDEQKLNSNEYLILASTLHGVFAIASQLTPKALQLTQQTNIENTIPYIPYVGMSSNRS 80 (219)
T ss_dssp -CEEEEEEECTTSCEEEEEECSSCCCCSCHHHHHHHHHHHHHHHHHHHHTCCSCC-----------CCCCCSCCC-----
T ss_pred CeeEEEEEEeCCCCEEeehhhccCcCCCCcchhhhhhhhhHHHHHHHhhcCCCccccccccccccccccccccccccccc
Confidence 358999999999999999999743 23444554443444447888888886532
Q ss_pred -----------------------------------ccccceeeeecceEEEEEEecCCeEEEEEecCCC-c---------
Q 032720 55 -----------------------------------AMFLKAIDRFNDLVVSVYVTAGHTRFMLLHDSRN-D--------- 89 (135)
Q Consensus 55 -----------------------------------~~ylg~l~~~~~~~v~~y~T~tg~Kfvl~~~~~~-~--------- 89 (135)
...+ ....+++|++|||+|+||+|||+++|++. +
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~-~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~ 159 (219)
T 3cue_A 81 DTRNGGGNNNKHTNNEKLGSFKGDDFFKEPFTNWNKSGL-RQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTD 159 (219)
T ss_dssp -----------------------CCSCCSCCCCCCSSSC-CEEEESSCEEEEEECTTSCEEEEEESSCC-----------
T ss_pred ccccccccccccccccccccccccccccccccccCCCce-EEEEeCCEEEEEEEcCCCCEEEEEecCCCccccccccccc
Confidence 1122 23337999999999999999999999763 2
Q ss_pred -------------hhHHHHHHHHHHHHHhhhh-CCCCCCCCCcCChhHHHHHHHHHHhh
Q 032720 90 -------------DGIKSFFQEVHELYIKILL-NPLYLPGSRITSSHFDTKVRALARKY 134 (135)
Q Consensus 90 -------------~~i~~~f~~i~~~Y~~~v~-NPFy~~~~~I~s~~F~~~v~~~~~~~ 134 (135)
+++|+||++||++|+|+|| ||||+++|||+|+.||++|+++++++
T Consensus 160 ~~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPFY~~~~pI~S~~Fd~~V~~~~~~~ 218 (219)
T 3cue_A 160 KPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVENL 218 (219)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHSCTTCCTTSCCCCHHHHHHHHHHHHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHhc
Confidence 8899999999999999987 99999999999999999999999986
No 6
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=100.00 E-value=4e-33 Score=211.22 Aligned_cols=122 Identities=17% Similarity=0.260 Sum_probs=105.2
Q ss_pred EEEcCCCCeeEEEecCCCccccchH-HHHHHHHHhcchhhhhhhcccc-ccccceeeeecceEEEEEEecCCeEEEEEec
Q 032720 8 IIVSRNEIPIYEAEVGSAVKREDAA-QLHQFILHAALDIVQDLAWTTS-AMFLKAIDRFNDLVVSVYVTAGHTRFMLLHD 85 (135)
Q Consensus 8 ~Ii~~~~~ply~~~~~~~~~~~~~~-~~~~~~~~~sLD~i~~~~~~~~-~~ylg~l~~~~~~~v~~y~T~tg~Kfvl~~~ 85 (135)
.|+||+|.|||++.|... .++++ +....++| |||+|++++|+.+ ...+..+ .+++|++|||+|+||+|||+++|
T Consensus 85 ~iigk~N~PLyir~f~~~--l~sn~~L~lag~lh-SLd~i~~klsp~~~s~g~~~~-~T~~ykl~~y~T~TgiKFVLltd 160 (219)
T 2j3t_D 85 YLGNPANYPVSIRFGRPR--LTSNEKLMLASMFH-SLFAIGSQLSPEQGSSGIEML-ETDTFKLHCYQTLTGIKFVVLAD 160 (219)
T ss_dssp HTTCGGGCSEEEEEECCC--CCHHHHHHHHHHHH-HHHHHHHHTCSSSSCCSCSEE-EESSCEEEEEECTTSCEEEEEEC
T ss_pred eeecCCCCceEEEecCCC--CChhHHHHHHHHHH-HHHHHHHHhCCCCCCCCeeEE-ecCceEEEEEEcCCCCEEEEEec
Confidence 578999999999999653 23333 34456888 9999999999864 3455444 58999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHhhhh-CCCCCCCCCcCChhHHHHHHHHHHhh
Q 032720 86 SRNDDGIKSFFQEVHELYIKILL-NPLYLPGSRITSSHFDTKVRALARKY 134 (135)
Q Consensus 86 ~~~~~~i~~~f~~i~~~Y~~~v~-NPFy~~~~~I~s~~F~~~v~~~~~~~ 134 (135)
++ ++++|++|++||++|+++++ ||||++++||+|+.||++|+++++++
T Consensus 161 ~~-~~~ir~~l~~IyelYvd~V~kNPFY~~~~pI~s~~Fd~~v~~l~~~~ 209 (219)
T 2j3t_D 161 PR-QAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEVA 209 (219)
T ss_dssp TT-CCCHHHHHHHHHHHHHHHHTTCTTCCTTSCCCCHHHHHHHHHHHHHH
T ss_pred CC-chHHHHHHHHHHHHHHHHhccCCCCCCCCccchHHHHHHHHHHHHHh
Confidence 75 89999999999999999976 99999999999999999999999986
No 7
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=93.35 E-value=0.067 Score=40.15 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=19.9
Q ss_pred CCceEEEEEEcCCCCeeEEEecCCC
Q 032720 1 MATTACFIIVSRNEIPIYEAEVGSA 25 (135)
Q Consensus 1 m~~i~~l~Ii~~~~~ply~~~~~~~ 25 (135)
|+ ||+++|+||+|++||.+++..+
T Consensus 1 m~-iy~~yi~~~~~~liy~~~~~~~ 24 (219)
T 2j3t_D 1 MA-IFSVYVVNKAGGLIYQLDSYAP 24 (219)
T ss_dssp -C-EEEEEEECTTSCEEEEEECC--
T ss_pred Ce-EEEEEEEecCCceEEecccCCC
Confidence 44 9999999999999999999754
No 8
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=93.28 E-value=1.4 Score=30.75 Aligned_cols=95 Identities=16% Similarity=0.135 Sum_probs=53.1
Q ss_pred eEEEEEEcCCCCeeEEEecCCCccccchHHHHHHHHHhcchhhhhhhccccccccceeeeecceEEEEEEecCCeEEEEE
Q 032720 4 TACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHTRFMLL 83 (135)
Q Consensus 4 i~~l~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~~~~~sLD~i~~~~~~~~~~ylg~l~~~~~~~v~~y~T~tg~Kfvl~ 83 (135)
|-++.|+|++|+++..|.|..............+ + ..+..+ .+...+++ ..++++ +.|....++=|+++
T Consensus 2 I~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~--~---~~i~~~-~~~~~~~i----~~~~~~-~vy~~~~~Lyfv~~ 70 (158)
T 1w63_Q 2 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVREL--M---QVVLAR-KPKMCSFL----EWRDLK-VVYKRYASLYFCCA 70 (158)
T ss_dssp EEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHH--H---HHHHTS-CSSSCSEE----EETTEE-EEEEEETTEEEEEE
T ss_pred eEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHH--H---HHHhcc-CCCCCCeE----EECCEE-EEEEEECCEEEEEE
Confidence 5689999999999999999653211111122112 1 111111 00111222 244544 56777889999999
Q ss_pred ecCC-CchhHHHHHHHHHHHHHhhhhC
Q 032720 84 HDSR-NDDGIKSFFQEVHELYIKILLN 109 (135)
Q Consensus 84 ~~~~-~~~~i~~~f~~i~~~Y~~~v~N 109 (135)
++.. ++-.+-++++.+.++.-+|..|
T Consensus 71 ~~~~~Nel~~le~L~~~vevl~~yf~~ 97 (158)
T 1w63_Q 71 IEGQDNELITLELIHRYVELLDKYFGS 97 (158)
T ss_dssp ECSSSCHHHHHHHHHHHHHHHHHHHSS
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 8754 3445556666666666555543
No 9
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=93.28 E-value=1.7 Score=31.68 Aligned_cols=101 Identities=11% Similarity=0.152 Sum_probs=61.9
Q ss_pred CCceEEEEEEcCCCC-eeEEE-ecC--CCccccchHHHHHHHHHhcchhhhhhhccccccccceeeeecceEEEEEEecC
Q 032720 1 MATTACFIIVSRNEI-PIYEA-EVG--SAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAG 76 (135)
Q Consensus 1 m~~i~~l~Ii~~~~~-ply~~-~~~--~~~~~~~~~~~~~~~~~~sLD~i~~~~~~~~~~ylg~l~~~~~~~v~~y~T~t 76 (135)
|+-++++.|+-+++. |+... .++ +-+.= +....-+|+..++ ..+-+++.+. -+.....++|.+|+|....
T Consensus 1 ~mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f-~r~sv~ef~~f~~-r~il~r~~~~----~r~s~~~~~y~fH~y~~~~ 74 (199)
T 3kyq_A 1 LMKLYSLSVFYKGEPKAVLLKAAYDVSSFSFF-QRSSVQEFMTFTS-QLIVERSAKG----SRASVKEQEYLCHVYVRSD 74 (199)
T ss_dssp CCCEEEEEEEEECSSCEEEEEEEECCTTSCTT-THHHHHHHHHHHH-HHHHHTSCTT----EEEEEECSSEEEEEEECTT
T ss_pred CceEEEEEEEEcCCCCceEEeeecccccccce-ehHhHHHHHHHHH-HHHHhcCCCC----CeEEEEeCCEEEEEEEecC
Confidence 788999999976544 44333 332 22221 1112224655533 2333333322 1344457899999999999
Q ss_pred CeEEEEEecCC-CchhHHHHHHHHHHHHHhhh
Q 032720 77 HTRFMLLHDSR-NDDGIKSFFQEVHELYIKIL 107 (135)
Q Consensus 77 g~Kfvl~~~~~-~~~~i~~~f~~i~~~Y~~~v 107 (135)
|+-+++++|.. ...-.-.|+++|.+.|....
T Consensus 75 gl~yl~itd~~yp~r~AF~fL~ei~~eF~~~~ 106 (199)
T 3kyq_A 75 SLAGVVIADSEYPSRVAFTLLEKVLDEFSKQV 106 (199)
T ss_dssp SEEEEEEEETTSCHHHHHHHHHHHHHHHHHHS
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999965 23455678888888887643
No 10
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=92.84 E-value=1.5 Score=29.89 Aligned_cols=95 Identities=12% Similarity=0.060 Sum_probs=53.3
Q ss_pred eEEEEEEcCCCCeeEEEecCCCccccchHHHHHHHHHhcchhhhhhhccccccccceeeeecceEEEEEEecCCeEEEEE
Q 032720 4 TACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHTRFMLL 83 (135)
Q Consensus 4 i~~l~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~~~~~sLD~i~~~~~~~~~~ylg~l~~~~~~~v~~y~T~tg~Kfvl~ 83 (135)
|-++.|+|++|+++..|.|.+.+..........|. .++...++. ...+-..++++ +.|....++=|+++
T Consensus 2 I~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~---------~~v~~~~~~-~~~~~~~~~~~-~vy~~~~~Lyfv~~ 70 (142)
T 2vgl_S 2 IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVH---------AVVTVRDAK-HTNFVEFRNFK-IIYRRYAGLYFCIC 70 (142)
T ss_dssp EEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHH---------HHHHTCCTT-SCSEEEETTEE-EEEEEETTEEEEEE
T ss_pred eEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHH---------HHHhcCCCC-CCCEEEECCEE-EEEEEECCEEEEEE
Confidence 56899999999999999996432111111111121 111111100 01112244444 56788889999999
Q ss_pred ecCC-CchhHHHHHHHHHHHHHhhhhC
Q 032720 84 HDSR-NDDGIKSFFQEVHELYIKILLN 109 (135)
Q Consensus 84 ~~~~-~~~~i~~~f~~i~~~Y~~~v~N 109 (135)
++.. ++-.+-++++.+.++.-+|..|
T Consensus 71 ~~~~~N~l~~le~L~~~ve~l~~yf~~ 97 (142)
T 2vgl_S 71 VDVNDNNLAYLEAIHNFVEVLNEYFHN 97 (142)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHTTS
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 8754 3445566666666666666533
No 11
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=89.59 E-value=4.4 Score=29.07 Aligned_cols=74 Identities=9% Similarity=0.161 Sum_probs=51.3
Q ss_pred eeeeecceEEEEEEecCCeEEEEEecCC-CchhHHHHHHHHHHHHHhhhhCCCCCCCCCcCChhHHHHHHHHHHhh
Q 032720 60 AIDRFNDLVVSVYVTAGHTRFMLLHDSR-NDDGIKSFFQEVHELYIKILLNPLYLPGSRITSSHFDTKVRALARKY 134 (135)
Q Consensus 60 ~l~~~~~~~v~~y~T~tg~Kfvl~~~~~-~~~~i~~~f~~i~~~Y~~~v~NPFy~~~~~I~s~~F~~~v~~~~~~~ 134 (135)
.....++|.+| |....|+-+++++|.. ...-.-.|+++|.+.|....-+-.-....|..-..|+..+.++.+.|
T Consensus 53 ~s~~~~~y~fh-y~~~~gl~~l~i~d~~yp~r~af~fL~~i~~~F~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y 127 (196)
T 2nut_C 53 CTLEAGAMTFH-YIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLY 127 (196)
T ss_dssp EEEEETTEEEE-EEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHTTTTTTCCSTTTTGGGHHHHHHHHTTT
T ss_pred EEEEeCCEEEE-EEeCCCeEEEEEEcCCcchHHHHHHHHHHHHHHHHhccchhccccCCCchHHHHHHHHHHHHHh
Confidence 34446788888 8889999999999965 23455678889888887644332211223555568999998887765
No 12
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=87.28 E-value=8.2 Score=31.04 Aligned_cols=93 Identities=5% Similarity=0.029 Sum_probs=52.9
Q ss_pred eEEEEEEcCCCCeeEEEecCCCccccchHHHHHHHHHhcchhhhhhhccccccccceeeeecceEEEEEEecCCeEEEEE
Q 032720 4 TACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHTRFMLL 83 (135)
Q Consensus 4 i~~l~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~~~~~sLD~i~~~~~~~~~~ylg~l~~~~~~~v~~y~T~tg~Kfvl~ 83 (135)
|-++.|+|++|+++..|.|..... .... +.+..++....+.-...+-..+++ .+.|+...++=|+++
T Consensus 2 I~~i~I~~~~Gk~~l~k~y~~~~~---~~~~---------~~f~~~v~~~~~~~~~~ii~~~~~-~~vy~~~~~Lyfv~~ 68 (435)
T 2vgl_M 2 IGGLFIYNHKGEVLISRVYRDDIG---RNAV---------DAFRVNVIHARQQVRSPVTNIART-SFFHVKRSNIWLAAV 68 (435)
T ss_dssp CCEEEEECTTCCEEEEEECSSSCC---HHHH---------HHHHHHTTTCSSCCCCSEEEETTE-EEEEEEETTEEEEEE
T ss_pred eEEEEEECCCCCEEEEEecCCCCC---hhHH---------HHHHHHHhccccCCCCCEEEECCE-EEEEEEECCEEEEEE
Confidence 458999999999999999964211 1111 222222221111000112224454 467788889999999
Q ss_pred ecCC-CchhHHHHHHHHHHHHHhhhhC
Q 032720 84 HDSR-NDDGIKSFFQEVHELYIKILLN 109 (135)
Q Consensus 84 ~~~~-~~~~i~~~f~~i~~~Y~~~v~N 109 (135)
++.. ++-.+-+++..+.++.-+|..|
T Consensus 69 ~~~~~n~l~~le~L~~~v~vl~~yf~~ 95 (435)
T 2vgl_M 69 TKQNVNAAMVFEFLYKMCDVMAAYFGK 95 (435)
T ss_dssp ESSCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 8754 3445556666666665555543
No 13
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=86.07 E-value=7.5 Score=27.79 Aligned_cols=75 Identities=13% Similarity=0.176 Sum_probs=48.5
Q ss_pred ceeeeecceEEEEEEecCCeEEEEEecCC-CchhHHHHHHHHHHHHHhhhhCCCCCCCCCcCChhHHHHHHHHHHhh
Q 032720 59 KAIDRFNDLVVSVYVTAGHTRFMLLHDSR-NDDGIKSFFQEVHELYIKILLNPLYLPGSRITSSHFDTKVRALARKY 134 (135)
Q Consensus 59 g~l~~~~~~~v~~y~T~tg~Kfvl~~~~~-~~~~i~~~f~~i~~~Y~~~v~NPFy~~~~~I~s~~F~~~v~~~~~~~ 134 (135)
+..+..++|..| |....|+-+++++|.. ...-.-.|+.+|.+.|....-+.-.....+-....|+..++++.++|
T Consensus 43 k~s~~~~~y~fH-yl~~~gl~yl~i~d~~yp~r~af~fL~~i~~eF~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y 118 (189)
T 4b93_A 43 KLTYSHGNYLFH-YICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHH 118 (189)
T ss_dssp EEEEEETTEEEE-EEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHGGGGGTCCTTTTHHHHHHHHHHHHHHH
T ss_pred eEEEEECCEEEE-EEEeCCeEEEEEEcCccCHHHHHHHHHHHHHHHHhhccccccccCCccccchhhHHHHHHHHhh
Confidence 344557889888 8889999999999965 23455678888887776543211111111112356888888887765
No 14
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=81.72 E-value=4.9 Score=32.23 Aligned_cols=88 Identities=5% Similarity=0.056 Sum_probs=51.2
Q ss_pred ceEEEEEEcCCCCeeEEEecCCCccccchHHHHHHHHHhcchhhhhhhc-----cccccccceeeeecceEEEEEEecCC
Q 032720 3 TTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAW-----TTSAMFLKAIDRFNDLVVSVYVTAGH 77 (135)
Q Consensus 3 ~i~~l~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~~~~~sLD~i~~~~~-----~~~~~ylg~l~~~~~~~v~~y~T~tg 77 (135)
+|-++.|+|++|+++..|.|......... +.+...+. +....+ -..+++ .+.|+...+
T Consensus 2 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~~------------~~f~~~v~~~~~~~~~~~~----i~~~~~-~~vy~~~~~ 64 (423)
T 1w63_M 2 SASAVYVLDLKGKVLICRNYRGDVDMSEV------------EHFMPILMEKEEEGMLSPI----LAHGGV-RFMWIKHNN 64 (423)
T ss_dssp CCCEEEEEETTTEECSCBCCSCSCTTTTH------------HHHHHHHHHHHHTSCCCSE----EEETTE-EEEEEEETT
T ss_pred ceEEEEEECCCCCEEEEEecCCCCChHHH------------HHHHHHHhhccccCCCCCE----EEECCE-EEEEEEECC
Confidence 46799999999999999999643211111 11111111 111111 124444 366788889
Q ss_pred eEEEEEecCC-CchhHHHHHHHHHHHHHhhh
Q 032720 78 TRFMLLHDSR-NDDGIKSFFQEVHELYIKIL 107 (135)
Q Consensus 78 ~Kfvl~~~~~-~~~~i~~~f~~i~~~Y~~~v 107 (135)
+=|+++++.. ++-.+-+++..+.++.-+|.
T Consensus 65 Lyfv~~~~~~~n~l~~le~L~~~v~~l~~yf 95 (423)
T 1w63_M 65 LYLVATSKKNACVSLVFSFLYKVVQVFSEYF 95 (423)
T ss_dssp EEEEEEESSCCCTHHHHHHHHHHHHHHHHHS
T ss_pred EEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999998754 33455556666666555554
No 15
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=81.45 E-value=12 Score=26.47 Aligned_cols=47 Identities=11% Similarity=0.190 Sum_probs=34.9
Q ss_pred eeeeecceEEEEEEecCCeEEEEEecCC-CchhHHHHHHHHHHHHHhhh
Q 032720 60 AIDRFNDLVVSVYVTAGHTRFMLLHDSR-NDDGIKSFFQEVHELYIKIL 107 (135)
Q Consensus 60 ~l~~~~~~~v~~y~T~tg~Kfvl~~~~~-~~~~i~~~f~~i~~~Y~~~v 107 (135)
.....++|.++.+. ..|+-+++++|.. ...-.-.|+++|.+.|.+..
T Consensus 86 ~s~~~~~y~fHyl~-~ngl~yl~I~D~~yp~r~AF~fLedI~~eF~~~y 133 (169)
T 2vx8_A 86 LTYSHGNYLFHYIC-QDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTY 133 (169)
T ss_dssp EEEEETTEEEEEEE-ETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEECCEEEEEEE-ECCEEEEEEEccccchHHHHHHHHHHHHHHHHHh
Confidence 33446889888887 4699999999965 23456778888888887643
No 16
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=69.81 E-value=24 Score=24.30 Aligned_cols=93 Identities=12% Similarity=0.165 Sum_probs=55.6
Q ss_pred ceEEEEEEcCCCCeeEEEecCCCccccchHHHHHHHHHhcchhhhhhhccccccccceeeeecceEEEEEEecCCeEEEE
Q 032720 3 TTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHTRFML 82 (135)
Q Consensus 3 ~i~~l~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~~~~~sLD~i~~~~~~~~~~ylg~l~~~~~~~v~~y~T~tg~Kfvl 82 (135)
+|-++.|+|++|+++..|.|...-...+.+....--++.- + ..... .+-..++++ ..|.--.++=|++
T Consensus 12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~---~----~r~~~----~i~~~~~~~-~vy~~~~~Lyfv~ 79 (153)
T 3tjz_C 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNK---T----HRTDS----EIALLEGLT-VVYKSSIDLYFYV 79 (153)
T ss_dssp CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHH---H----SSCCC----CEEEETTEE-EEEEECSSCEEEE
T ss_pred HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHH---H----hCCCC----CEEEECCEE-EEEEEECCEEEEE
Confidence 5679999999999999999964211111111111111111 1 11111 112234544 5788888999999
Q ss_pred EecCC-CchhHHHHHHHHHHHHHhhh
Q 032720 83 LHDSR-NDDGIKSFFQEVHELYIKIL 107 (135)
Q Consensus 83 ~~~~~-~~~~i~~~f~~i~~~Y~~~v 107 (135)
+++.. ++-.+-+++..+.++.-++.
T Consensus 80 ~~~~~eNel~ile~L~~~ve~l~~yf 105 (153)
T 3tjz_C 80 IGSSYENELMLMTVLNCLFDSLSQML 105 (153)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCChHHHHHHHHHHHHHHHHHh
Confidence 99865 45567777788877777775
No 17
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=68.69 E-value=3.4 Score=23.78 Aligned_cols=16 Identities=38% Similarity=0.885 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhhhh
Q 032720 93 KSFFQEVHELYIKILL 108 (135)
Q Consensus 93 ~~~f~~i~~~Y~~~v~ 108 (135)
.+|..+||++|++.+.
T Consensus 28 ~~Fl~~IHeAYl~sl~ 43 (51)
T 2wx3_A 28 SSFLSTLHEVYLQVLT 43 (51)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5799999999998753
No 18
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=60.58 E-value=3.4 Score=23.25 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhhhh
Q 032720 94 SFFQEVHELYIKILL 108 (135)
Q Consensus 94 ~~f~~i~~~Y~~~v~ 108 (135)
+|..+||++|++.+.
T Consensus 27 ~Fl~~iHeAYl~sl~ 41 (46)
T 2wx4_A 27 EFANKLHKAYLNGCS 41 (46)
T ss_dssp THHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHH
Confidence 688999999997653
No 19
>3bua_E HSNM1B, DNA cross-LINK repair 1B protein; TRF2 TRFH domain dimerization domain apollo peptide, alternative splicing, cell cycle; HET: DNA; 2.50A {Homo sapiens}
Probab=58.75 E-value=2.5 Score=22.20 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=23.5
Q ss_pred HHHHhhhhCCCCCCCCCcCChhHHHHHHHHH
Q 032720 101 ELYIKILLNPLYLPGSRITSSHFDTKVRALA 131 (135)
Q Consensus 101 ~~Y~~~v~NPFy~~~~~I~s~~F~~~v~~~~ 131 (135)
.+-.+|++-|..-......|..||++|++..
T Consensus 5 ~LALKYLLTPv~~l~a~~Ssr~FD~QVEK~~ 35 (36)
T 3bua_E 5 GLALKYLLTPVNFFQAGYSSRRFDQQVEKYH 35 (36)
T ss_pred HHHHHHHhhhHHHHhcccchhhHHHHHHHhc
Confidence 3446777777766677889999999998653
No 20
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=46.17 E-value=65 Score=21.68 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=36.8
Q ss_pred ceeeeecceEEEEEEecCCeEEEEEecCC-CchhHHHHHHHHHHHHHhh
Q 032720 59 KAIDRFNDLVVSVYVTAGHTRFMLLHDSR-NDDGIKSFFQEVHELYIKI 106 (135)
Q Consensus 59 g~l~~~~~~~v~~y~T~tg~Kfvl~~~~~-~~~~i~~~f~~i~~~Y~~~ 106 (135)
+.-...++|.+|.+....|+-+++++|.. ...-.=.++++|.+.|...
T Consensus 60 R~sv~~~~y~fH~~~~~~gl~~l~i~D~~yp~rvAF~~L~~i~~eF~~~ 108 (144)
T 3bw6_A 60 RQSIEEGNYIGHVYARSEGICGVLITDKEYPVRPAYTLLNKILDEYLVA 108 (144)
T ss_dssp EEEEEETTEEEEEEECTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCEEEEEEEecCCEEEEEEECCCCChhHHHHHHHHHHHHHHHH
Confidence 34445789999999788999999999965 2345566788888888764
No 21
>1skv_A ORF D-63, hypothetical 7.5 kDa protein; sulfolobus spindle virus, SSV, archaeal, crenarchaeal, helix-turn-helix, four helix bundle; 2.60A {Sulfolobus virus 1} SCOP: a.30.5.1
Probab=33.49 E-value=35 Score=20.54 Aligned_cols=23 Identities=17% Similarity=0.496 Sum_probs=20.3
Q ss_pred chhHHHHHHHHHHHHHhhhhCCC
Q 032720 89 DDGIKSFFQEVHELYIKILLNPL 111 (135)
Q Consensus 89 ~~~i~~~f~~i~~~Y~~~v~NPF 111 (135)
|+++|.++.-||+.=+|.+.+--
T Consensus 15 D~diReLLSlvheIKID~It~n~ 37 (69)
T 1skv_A 15 DEDVRELLSLIHEIKIDRITGNM 37 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHheeeeccCC
Confidence 68999999999999999998544
No 22
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=30.16 E-value=91 Score=22.10 Aligned_cols=50 Identities=12% Similarity=0.240 Sum_probs=37.5
Q ss_pred cccccceeeeecceEEEEEEecCCeEEEEEecCCCchhHHHHHHHHHHHHHh
Q 032720 54 SAMFLKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIK 105 (135)
Q Consensus 54 ~~~ylg~l~~~~~~~v~~y~T~tg~Kfvl~~~~~~~~~i~~~f~~i~~~Y~~ 105 (135)
++.|=|.+++..+-++-..+=.||= |+++..+..++++.-++.||..-.+
T Consensus 127 PE~fPGliyR~~~pkv~~lIF~SGk--ivitGak~~~~~~~a~~~i~p~L~~ 176 (180)
T 1ytb_A 127 PELFPGLIYRMVKPKIVLLIFVSGK--IVLTGAKQREEIYQAFEAIYPVLSE 176 (180)
T ss_dssp TTTCSSEEEECSSSCCEEEECTTSE--EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CccCCcEEEEeCCCcEEEEEecCCe--EEEEecCCHHHHHHHHHHHHHHHHH
Confidence 5677799999888888888888883 3344444578899999999876444
No 23
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=26.21 E-value=1.7e+02 Score=20.43 Aligned_cols=73 Identities=11% Similarity=0.124 Sum_probs=44.9
Q ss_pred eeeeecceEEEEEEecCCeEEEEEecCC-CchhHHHHHHHHHHHHHhhhhCCCCCCCCCc-CChhHHHHHHHHHHhh
Q 032720 60 AIDRFNDLVVSVYVTAGHTRFMLLHDSR-NDDGIKSFFQEVHELYIKILLNPLYLPGSRI-TSSHFDTKVRALARKY 134 (135)
Q Consensus 60 ~l~~~~~~~v~~y~T~tg~Kfvl~~~~~-~~~~i~~~f~~i~~~Y~~~v~NPFy~~~~~I-~s~~F~~~v~~~~~~~ 134 (135)
.....++|.+|... ..|+-++.++|.. .....-.|+++|.+.|...--+-.-. ..|- -...|...+++..+.|
T Consensus 96 ~t~~~~~y~fHyl~-~dgl~yl~i~D~~~~rr~aF~FLedI~~eF~~~yg~~~~t-a~pya~~~eF~~~L~~~M~~y 170 (173)
T 4afi_A 96 LTYSHGNYLFHYIC-QDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQT-ALPYAMNSEFSSVLAAQLKHH 170 (173)
T ss_dssp EEEEETTEEEEEEE-ETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHGGGGGT-CCTTTTHHHHHHHHHHHHHHH
T ss_pred EEEEECCEEEEEEE-ECCEEEEEEECCccChhHHHHHHHHHHHHHHHHhchhhhh-ccCcchhHHHHHHHHHHHHHh
Confidence 33446777666665 6899999999975 23455667788887776543221100 1111 1247889998887765
No 24
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=25.10 E-value=27 Score=18.32 Aligned_cols=13 Identities=15% Similarity=0.549 Sum_probs=10.8
Q ss_pred chhHHHHHHHHHH
Q 032720 89 DDGIKSFFQEVHE 101 (135)
Q Consensus 89 ~~~i~~~f~~i~~ 101 (135)
++.+-.||++||+
T Consensus 5 ~~~l~~~fk~iY~ 17 (35)
T 2jtt_C 5 SEGLMNVLKKIYE 17 (35)
T ss_dssp CCSHHHHHHHHHT
T ss_pred hHHHHHHHHHHHh
Confidence 5678999999985
No 25
>1bl1_A Parathyroid hormone receptor; micelle structures, calciotropic hormones, structures; NMR {Homo sapiens} SCOP: j.15.1.1
Probab=23.46 E-value=25 Score=18.02 Aligned_cols=14 Identities=14% Similarity=0.382 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHH
Q 032720 91 GIKSFFQEVHELYI 104 (135)
Q Consensus 91 ~i~~~f~~i~~~Y~ 104 (135)
.=+++|+++|..|.
T Consensus 12 ~~~e~FeRL~~iYT 25 (31)
T 1bl1_A 12 REREVFDRLGMIYT 25 (31)
T ss_dssp CHHHHHHSSHHHHH
T ss_pred chHHHHhheeeEEE
Confidence 45899999999986
No 26
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=23.42 E-value=1.8e+02 Score=19.93 Aligned_cols=22 Identities=9% Similarity=0.354 Sum_probs=19.1
Q ss_pred ceEEEEEEcCCCCeeEEEecCC
Q 032720 3 TTACFIIVSRNEIPIYEAEVGS 24 (135)
Q Consensus 3 ~i~~l~Ii~~~~~ply~~~~~~ 24 (135)
++.++.|-+|+|.||.-....+
T Consensus 37 Gl~aI~ItDrDGVpi~kv~~~~ 58 (143)
T 3cpt_A 37 GLHAIVVSDRDGVPVIKVANDN 58 (143)
T ss_dssp TEEEEEEECTTSCEEEEEECTT
T ss_pred CeEEEEEECCCCcEEEEecCCC
Confidence 7899999999999998887644
No 27
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=22.66 E-value=1.3e+02 Score=18.90 Aligned_cols=36 Identities=8% Similarity=0.200 Sum_probs=24.0
Q ss_pred cceEEEEEEecCCeEEEEEecCCCchhHHHHHHHHHH
Q 032720 65 NDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHE 101 (135)
Q Consensus 65 ~~~~v~~y~T~tg~Kfvl~~~~~~~~~i~~~f~~i~~ 101 (135)
..-.+++-...+| |+|+..+..+.+.+...+++|..
T Consensus 30 pgvEi~~~~~~~G-kiVV~iEa~~~~~l~~~i~~I~~ 65 (95)
T 2jsx_A 30 PGCEVAVSDAPSG-QLIVVVEAEDSETLIQTIESVRN 65 (95)
T ss_dssp TTEEEEEEETTTT-EEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCeEEEEecCCCC-CEEEEEEeCCHHHHHHHHHHHhc
Confidence 3445665545567 99999987666667767666654
No 28
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=22.47 E-value=1.5e+02 Score=21.69 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=38.3
Q ss_pred cccccceeeeecceEEEEEEecCCeEEEEEecCCCchhHHHHHHHHHHHHHhh
Q 032720 54 SAMFLKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKI 106 (135)
Q Consensus 54 ~~~ylg~l~~~~~~~v~~y~T~tg~Kfvl~~~~~~~~~i~~~f~~i~~~Y~~~ 106 (135)
++.|=|.+++..+=++-..+=.||= |+++..+..++++.-++.||..-.++
T Consensus 165 PE~fPGliyR~~~pkvt~lIF~SGK--iviTGaks~~d~~~A~~~I~p~L~~f 215 (218)
T 3eik_A 165 PELFPGLIYRMVKPKIVLLIFVSGK--IVLTGAKVRDDIYQAFNNIYPVLIQH 215 (218)
T ss_dssp TTTSSSEEEEETTTTEEEEECTTSE--EEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CccCceEEEEcCCCCEEEEEeCCCe--EEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 5667788998888788888888883 34444456789999999999876554
No 29
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=22.07 E-value=1.4e+02 Score=22.23 Aligned_cols=50 Identities=12% Similarity=0.240 Sum_probs=37.0
Q ss_pred cccccceeeeecceEEEEEEecCCeEEEEEecCCCchhHHHHHHHHHHHHHh
Q 032720 54 SAMFLKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIK 105 (135)
Q Consensus 54 ~~~ylg~l~~~~~~~v~~y~T~tg~Kfvl~~~~~~~~~i~~~f~~i~~~Y~~ 105 (135)
++.|=|.+++..+-++-..+=.||= |+++..+..++++.-++.||..-.+
T Consensus 187 PE~fPGLiyR~~~pkvvllIF~SGK--IviTGaK~~~~~~~Ai~~i~p~L~~ 236 (240)
T 1rm1_A 187 PELFPGLIYRMVKPKIVLLIFVSGK--IVLTGAKQREEIYQAFEAIYPVLSE 236 (240)
T ss_dssp TTTEEEEEEEETTTTEEEEECTTSE--EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CccCCceEEEeCCCcEEEEEecCCE--EEEEecCCHHHHHHHHHHHHHHHHH
Confidence 5677788999888888888888883 3344444578899999999977544
No 30
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=21.26 E-value=2.3e+02 Score=20.13 Aligned_cols=50 Identities=12% Similarity=0.246 Sum_probs=39.1
Q ss_pred cccccceeeeecceEEEEEEecCCeEEEEEecCCCchhHHHHHHHHHHHHHh
Q 032720 54 SAMFLKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIK 105 (135)
Q Consensus 54 ~~~ylg~l~~~~~~~v~~y~T~tg~Kfvl~~~~~~~~~i~~~f~~i~~~Y~~ 105 (135)
++.|=|.+++..+-++.+.+=.||= |+++..+++++++.-++.++..-.+
T Consensus 135 Pe~fPgliyR~~~Pk~t~lIF~SGK--iviTGaks~~~~~~A~~~i~~~L~~ 184 (188)
T 2z8u_A 135 PEQFPGLVYRLDDPKVVVLIFGSGK--VVITGLKSEEDAKRALKKILDTIKE 184 (188)
T ss_dssp TTTSSSEEEEEETTEEEEEECTTSE--EEEESCSCHHHHHHHHHHHHHHHHH
T ss_pred CccCceEEEEeCCCcEEEEEeCCCE--EEEEecCCHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999888883 5556656678899998888875543
Done!