BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032721
(135 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 129 bits (325), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 67/131 (51%), Positives = 86/131 (65%), Gaps = 2/131 (1%)
Query: 1 MSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKKPEMNGLMRKAMSGVSVPFMTSVLDGY 60
M +W + +AVLD I PF K +G A+ Y+G P N + K MS S M +L+ Y
Sbjct: 137 MESWYHLKDAVLDGGI-PFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETY 195
Query: 61 DGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDLPEVVAEAPSIPGVTHIGGDMFK 120
GF+G+K LVDVGG G + I+ K+P I +GINFDLP V+ +APS PGV H+GGDMF
Sbjct: 196 TGFEGLKSLVDVGGGTGAVINTIVSKYPTI-KGINFDLPHVIEDAPSYPGVEHVGGDMFV 254
Query: 121 SIPAADAIFMK 131
SIP ADA+FMK
Sbjct: 255 SIPKADAVFMK 265
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 122 bits (307), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 82/131 (62%), Gaps = 1/131 (0%)
Query: 1 MSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKKPEMNGLMRKAMSGVSVPFMTSVLDGY 60
+ W EAV+D I+ F VHG Y + GK +MN + K+M V M +L+ Y
Sbjct: 145 LQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIY 204
Query: 61 DGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDLPEVVAEAPSIPGVTHIGGDMFK 120
GF+G+ LVDVGG +G L +I+ K+P I +GINFDLP+V+ AP + G+ H+GGDMF
Sbjct: 205 TGFEGISTLVDVGGGSGRNLELIISKYPLI-KGINFDLPQVIENAPPLSGIEHVGGDMFA 263
Query: 121 SIPAADAIFMK 131
S+P DA+ +K
Sbjct: 264 SVPQGDAMILK 274
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/131 (45%), Positives = 81/131 (61%), Gaps = 2/131 (1%)
Query: 1 MSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKKPEMNGLMRKAMSGVSVPFMTSVLDGY 60
M +W + +AVLD I PF K +G A+ Y+G P N + + M S+ +L+ Y
Sbjct: 138 MESWYYLKDAVLDGGI-PFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELY 196
Query: 61 DGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDLPEVVAEAPSIPGVTHIGGDMFK 120
GF+G+ LVDVGG G + I +P I +G+NFDLP V++EAP PGVTH+GGDMFK
Sbjct: 197 HGFEGLGTLVDVGGGVGATVAAIAAHYPTI-KGVNFDLPHVISEAPQFPGVTHVGGDMFK 255
Query: 121 SIPAADAIFMK 131
+P+ D I MK
Sbjct: 256 EVPSGDTILMK 266
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 112 bits (280), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 76/131 (58%), Gaps = 1/131 (0%)
Query: 1 MSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKKPEMNGLMRKAMSGVSVPFMTSVLDGY 60
+ W EAV+D I+ F VHG Y + GK + N + K+ V L+ Y
Sbjct: 145 LQVWXNFKEAVVDEDIDLFKNVHGVTKYEFXGKDKKXNQIFNKSXVDVCATEXKRXLEIY 204
Query: 61 DGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDLPEVVAEAPSIPGVTHIGGDMFK 120
GF+G+ LVDVGG +G L +I+ K+P I +GINFDLP+V+ AP + G+ H+GGD F
Sbjct: 205 TGFEGISTLVDVGGGSGRNLELIISKYPLI-KGINFDLPQVIENAPPLSGIEHVGGDXFA 263
Query: 121 SIPAADAIFMK 131
S+P DA +K
Sbjct: 264 SVPQGDAXILK 274
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 79/131 (60%), Gaps = 2/131 (1%)
Query: 1 MSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKKPEMNGLMRKAMSGVSVPFMTSVLDGY 60
+ W + +A+L+ I PF K +G + Y+G +N + K MS S M +L+ Y
Sbjct: 140 LEPWFYLKDAILEGGI-PFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMY 198
Query: 61 DGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDLPEVVAEAPSIPGVTHIGGDMFK 120
+GF+G+ +VDVGG G MI+ K+P I INFDLP V+ +AP+ GV H+GGDMF
Sbjct: 199 NGFEGLTTIVDVGGGTGAVASMIVAKYPSI-NAINFDLPHVIQDAPAFSGVEHLGGDMFD 257
Query: 121 SIPAADAIFMK 131
+P DAIF+K
Sbjct: 258 GVPKGDAIFIK 268
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 68/143 (47%), Gaps = 18/143 (12%)
Query: 5 PLVHEAVLDPTIE----------------PFVKVHGEPAYSYYGKKPEMNGLMRKAMSGV 48
P+V E VLDPT+ F G + + K PE N AM+
Sbjct: 113 PMV-ECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASD 171
Query: 49 SVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDLPEVVAEAPSI 108
S ++ D F G++ +VDVGG G ++I + P + + I FD P+VV
Sbjct: 172 SKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKL-KCIVFDRPQVVENLSGS 230
Query: 109 PGVTHIGGDMFKSIPAADAIFMK 131
+T++GGDMF SIP ADA+ +K
Sbjct: 231 NNLTYVGGDMFTSIPNADAVLLK 253
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 20/144 (13%)
Query: 5 PLVHEAVLDPTIEP----------------FVKVHGEPAYSYYGKKPEMNGLMRKAMSGV 48
P+V E VLDPT+ F G + + K PE N L A++
Sbjct: 118 PMV-ECVLDPTLSTSFHNLKKWVYEEDLTLFAVNLGCDLWEFLNKNPEYNTLYNDALASD 176
Query: 49 SVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHP-FICEGINFDLPEVVAEAPS 107
S ++ D F+G++ +VDVGG G ++I + P C + FD P+VV
Sbjct: 177 SKMINLAMKDCNLVFEGLESIVDVGGGNGTTGKIICETFPKLTC--VVFDRPKVVENLCG 234
Query: 108 IPGVTHIGGDMFKSIPAADAIFMK 131
+T++GGDMF S+P ADA+ +K
Sbjct: 235 SNNLTYVGGDMFISVPKADAVLLK 258
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 9 EAVLDPTIE----------------PFVKVHGEPAYSYYGKKPEMNGLMRKAMSGVSVPF 52
E VLDPT+ F G + + K PE N A + S
Sbjct: 116 ECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAXASDSKLI 175
Query: 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDLPEVVAEAPSIPGVT 112
++ D F G++ +VDVGG G ++I + P + + I FD P+VV +T
Sbjct: 176 NLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKL-KCIVFDRPQVVENLSGSNNLT 234
Query: 113 HIGGDMFKSIPAADAIFMK 131
++GGD F SIP ADA+ +K
Sbjct: 235 YVGGDXFTSIPNADAVLLK 253
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 24 GEPAYSYYGKKPEMNGL--MRKAMSGVSVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLR 81
GE + + K E + L + AM+ S F + + F+G++ LVDVGG G +
Sbjct: 149 GESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTK 208
Query: 82 MILQKHPFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMK 131
+I + P + + FD P+VV + +GGDMFKSIP+ADA+ +K
Sbjct: 209 LIHEIFPHLKCTV-FDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLK 257
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 24 GEPAYSYYGKKPEMNGL--MRKAMSGVSVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLR 81
GE + + K E + L + AM+ S F + + F+G++ LVDVGG G +
Sbjct: 146 GESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTK 205
Query: 82 MILQKHPFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMK 131
+I + P + + FD P+VV + +GGDMFKSIP+ADA+ +K
Sbjct: 206 LIHEIFPHLKCTV-FDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLK 254
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 24 GEPAYSYYGKKPEMNGL--MRKAMSGVSVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLR 81
GE + + K E + L + AM+ S F + + F+G++ LVDVGG G +
Sbjct: 150 GESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTK 209
Query: 82 MILQKHPFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMK 131
+I + P + + FD P+VV + +GGDMFKSIP+ADA+ +K
Sbjct: 210 LIHEIFPHLKCTV-FDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLK 258
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 16/138 (11%)
Query: 2 SAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKKPEMNGLMRKAMSGVSVPF--MTSVLDG 59
+AW EA+L T F GE YSY + P+ AM ++ F + +LD
Sbjct: 108 AAWTPACEALLSGT-PGFELAFGEDFYSYLKRCPDAGRRFLLAMKASNLAFHEIPRLLD- 165
Query: 60 YDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDLPEVVAEAPS-----IPG--VT 112
F+G + VDVGG +G+ + ILQ P G+ D + A + G V+
Sbjct: 166 ---FRG-RSFVDVGGGSGELTKAILQAEPS-ARGVMLDREGSLGVARDNLSSLLAGERVS 220
Query: 113 HIGGDMFKSIPAADAIFM 130
+GGDM + +P+ I++
Sbjct: 221 LVGGDMLQEVPSNGDIYL 238
>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
pdb|3LST|B Chain B, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
Length = 348
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 9/135 (6%)
Query: 4 WPLVHE--AVLDPTIEPFVKVHGEPAYSYYGKKPEMNGLMRKAMSGVSVPFMTSVLDGYD 61
W H + L P F + G +Y+ E+ L + VS + D
Sbjct: 122 WTXSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGXETVSAAEHLILARAGD 181
Query: 62 GFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDLPEVVA----EAPSIPGVTH-IGG 116
F + DVGG G L +L++HP + +G+ D EVVA +AP + G + G
Sbjct: 182 -FPATGTVADVGGGRGGFLLTVLREHPGL-QGVLLDRAEVVARHRLDAPDVAGRWKVVEG 239
Query: 117 DMFKSIPAADAIFMK 131
D + +P AD +K
Sbjct: 240 DFLREVPHADVHVLK 254
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 49/124 (39%), Gaps = 13/124 (10%)
Query: 19 FVKVHGEPAYSYYGKKPEMNGLMRKAMSGVSVPFMTSVLDGYDGFKGVKRLVDVGGSAGD 78
F +G + + P+ L +A VS+ V YD F G VD+GG G
Sbjct: 157 FDVANGTSFWQLTHEDPKARELFNRAXGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGS 215
Query: 79 CLRMILQKHPFICEGINFDLPEVVAEAPSIPGVTHIG---------GDMFKSIPAADAIF 129
+L P + G + P V EA + +T G GD F++IP ++
Sbjct: 216 LXAAVLDAFPGL-RGTLLERPPVAEEAREL--LTGRGLADRCEILPGDFFETIPDGADVY 272
Query: 130 MKVH 133
+ H
Sbjct: 273 LIKH 276
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 33.5 bits (75), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 63 FKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDLP---EVVAEAPSIPGVTH----IG 115
GVK+++DVGG GD +L+ P + I +LP ++V E + GV I
Sbjct: 188 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTI-LNLPGAIDLVNENAAEKGVADRMRGIA 246
Query: 116 GDMFK-SIPAADAIF 129
D++K S P ADA+
Sbjct: 247 VDIYKESYPEADAVL 261
>pdb|1N2T|A Chain A, C-Des Mutant K223a With Gly Covalenty Linked To The
Plp-Cofactor
pdb|1N2T|B Chain B, C-Des Mutant K223a With Gly Covalenty Linked To The
Plp-Cofactor
pdb|1N31|A Chain A, Structure Of A Catalytically Inactive Mutant (K223a) Of
C-Des With A Substrate (Cystine) Linked To The Co-Factor
pdb|1N31|B Chain B, Structure Of A Catalytically Inactive Mutant (K223a) Of
C-Des With A Substrate (Cystine) Linked To The Co-Factor
Length = 386
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Query: 31 YGKKPEMNGLMRKAMSGVSVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFI 90
YG K E G A G TS Y G +L G+A + + I Q+ F+
Sbjct: 249 YGAKGEPTGW---AEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFL 305
Query: 91 CEGINFDLPEVVAEAPSIP 109
G+N LP V A S P
Sbjct: 306 WRGLN-QLPHVHCLATSAP 323
>pdb|1ELQ|A Chain A, Crystal Structure Of The Cystine C-S Lyase C-Des
pdb|1ELQ|B Chain B, Crystal Structure Of The Cystine C-S Lyase C-Des
pdb|1ELU|A Chain A, Complex Between The Cystine C-S Lyase C-Des And Its
Reaction Product Cysteine Persulfide.
pdb|1ELU|B Chain B, Complex Between The Cystine C-S Lyase C-Des And Its
Reaction Product Cysteine Persulfide
Length = 390
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Query: 31 YGKKPEMNGLMRKAMSGVSVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFI 90
YG K E G A G TS Y G +L G+A + + I Q+ F+
Sbjct: 253 YGAKGEPTGW---AEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFL 309
Query: 91 CEGINFDLPEVVAEAPSIP 109
G+N LP V A S P
Sbjct: 310 WRGLN-QLPHVHCLATSAP 327
>pdb|1VYI|A Chain A, Structure Of The C-Terminal Domain Of The Polymerase
Cofactor Of Rabies Virus: Insights In Function And
Evolution
Length = 112
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 92 EGINFDLPEVVAEAPSIPGVTHIGGD 117
E + +L ++V EA ++PGVT + D
Sbjct: 43 EQLKMNLDDIVKEAKNVPGVTRLAHD 68
>pdb|3OA1|A Chain A, Crystal Structure Of PhosphoproteinPROTEIN PPROTEIN M1
RESIDUES 69- 297 From Rabies Virus Reveals Degradation
To C-Terminal Domain Only
pdb|3OA1|B Chain B, Crystal Structure Of PhosphoproteinPROTEIN PPROTEIN M1
RESIDUES 69- 297 From Rabies Virus Reveals Degradation
To C-Terminal Domain Only
Length = 229
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 92 EGINFDLPEVVAEAPSIPGVTHIGGD 117
E + +L ++V EA ++PGVT + D
Sbjct: 160 EQLKMNLDDIVKEAKNVPGVTRLARD 185
>pdb|3I3R|A Chain A, X-Ray Structure Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis At 2.35a Resolution
pdb|3I3R|B Chain B, X-Ray Structure Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis At 2.35a Resolution
pdb|3K2H|A Chain A, Co-Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE From Babesia Bovis With Dump, Pemetrexed And
Nadp
pdb|3K2H|B Chain B, Co-Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE From Babesia Bovis With Dump, Pemetrexed And
Nadp
pdb|3KJR|A Chain A, Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis Determined Using Slipchip
Based Microfluidics
pdb|3KJR|B Chain B, Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis Determined Using Slipchip
Based Microfluidics
Length = 511
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 89 FICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAA 125
F+ G + PEV+++ P I V G ++SIP A
Sbjct: 40 FLRNGTTYIPPEVLSKNPDIQNVVIFGRKTYESIPKA 76
>pdb|3NRR|A Chain A, Co-Crystal Structure Of Dihydrofolate
Reductase-Thymidylate Synthase From Babesia Bovis With
Dump, Raltitrexed And Nadp
pdb|3NRR|B Chain B, Co-Crystal Structure Of Dihydrofolate
Reductase-Thymidylate Synthase From Babesia Bovis With
Dump, Raltitrexed And Nadp
Length = 515
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 89 FICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAA 125
F+ G + PEV+++ P I V G ++SIP A
Sbjct: 44 FLRNGTTYIPPEVLSKNPDIQNVVIFGRKTYESIPKA 80
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 58 DGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDLP-------EVVAEAPSIPG 110
D YD + V+ ++DVGG G L I + P + G +L A+A
Sbjct: 176 DAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHL-RGTLVELAGPAERARRRFADAGLADR 233
Query: 111 VTHIGGDMFKSIP-AADAIFMK 131
VT GD FK +P AD + +
Sbjct: 234 VTVAEGDFFKPLPVTADVVLLS 255
>pdb|3ANX|A Chain A, Crystal Structure Of TriamineAGMATINE
AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus,
Complexed With Mta
pdb|3ANX|B Chain B, Crystal Structure Of TriamineAGMATINE
AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus,
Complexed With Mta
Length = 314
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL 98
KR++ VGG G LR +L KHP + + + D+
Sbjct: 79 KRVLIVGGGEGATLREVL-KHPTVEKAVMVDI 109
>pdb|1UIR|A Chain A, Crystal Structure Of Polyamine Aminopropyltransfease From
Thermus Thermophilus
pdb|1UIR|B Chain B, Crystal Structure Of Polyamine Aminopropyltransfease From
Thermus Thermophilus
Length = 314
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL 98
KR++ VGG G LR +L KHP + + + D+
Sbjct: 79 KRVLIVGGGEGATLREVL-KHPTVEKAVMVDI 109
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
pdb|3AMI|B Chain B, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
Length = 445
Score = 26.6 bits (57), Expect = 4.8, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 41 MRKAMSGVSVPFMTSVLDGYDGFKGVKRLVD-----VGGSAG-DCLRMILQKHPFICEGI 94
+ K+ ++ + +VLDGYDG + ++LV V AG D L Q+ FI EG+
Sbjct: 259 LDKSRDAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAGYDSLSR-GQQGLFILEGV 317
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
pdb|3AMJ|A Chain A, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
Length = 437
Score = 26.6 bits (57), Expect = 4.9, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 41 MRKAMSGVSVPFMTSVLDGYDGFKGVKRLVD-----VGGSAG-DCLRMILQKHPFICEGI 94
+ K+ ++ + +VLDGYDG + ++LV V AG D L Q+ FI EG+
Sbjct: 259 LDKSRDAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAGYDSLSR-GQQGLFILEGV 317
>pdb|3H4I|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products
pdb|3H4T|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products - Gtfah1 In Complex With Udp-2f-Glc
Length = 404
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 3 AWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKKPEMNGLMRKAMSGVSVPFMTSVLDGYDG 62
AW L + L +E F++ P Y +G P R A+ V VL G
Sbjct: 200 AWILPDQRPLSAELEGFLRAGSPPVYVGFGSGPAPAEAARVAIEAVRAQGRRVVLS--SG 257
Query: 63 FKGVKRLVDVGGSAGDCL 80
+ G+ R +D G DCL
Sbjct: 258 WAGLGR-IDEG---DDCL 271
>pdb|3I6T|A Chain A, Crystal Structure Of Muconate Cycloisomerase From
Jannaschia Sp.
pdb|3I6T|B Chain B, Crystal Structure Of Muconate Cycloisomerase From
Jannaschia Sp.
pdb|3I6T|C Chain C, Crystal Structure Of Muconate Cycloisomerase From
Jannaschia Sp.
pdb|3I6T|D Chain D, Crystal Structure Of Muconate Cycloisomerase From
Jannaschia Sp
Length = 381
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Query: 84 LQKHPFICEGINFDL--------PEVVAEAPSIPGVTHIGGDMFKS 121
+ +HP I +G++ + + VA + G++ GGDMF++
Sbjct: 258 MAEHPEIADGVSIKIMKSGGLTRAQTVARMAAARGLSAYGGDMFEA 303
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,572,924
Number of Sequences: 62578
Number of extensions: 184937
Number of successful extensions: 431
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 394
Number of HSP's gapped (non-prelim): 39
length of query: 135
length of database: 14,973,337
effective HSP length: 88
effective length of query: 47
effective length of database: 9,466,473
effective search space: 444924231
effective search space used: 444924231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)