Query 032721
Match_columns 135
No_of_seqs 207 out of 1306
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 05:06:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032721.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032721hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00891 Methyltransf_2: O-met 100.0 9.7E-33 2.1E-37 201.3 7.3 130 2-134 38-168 (241)
2 KOG3178 Hydroxyindole-O-methyl 99.9 2.3E-24 4.9E-29 161.9 8.7 132 1-134 114-246 (342)
3 TIGR02716 C20_methyl_CrtF C-20 99.8 1.8E-18 3.9E-23 130.2 10.0 122 3-134 95-225 (306)
4 COG4106 Tam Trans-aconitate me 99.2 1.4E-11 3E-16 87.9 5.7 92 40-134 7-102 (257)
5 PF12847 Methyltransf_18: Meth 99.2 1.5E-11 3.3E-16 79.2 5.3 65 67-132 3-78 (112)
6 PRK14103 trans-aconitate 2-met 99.1 2.4E-10 5.1E-15 84.1 8.4 78 54-134 19-99 (255)
7 TIGR03587 Pse_Me-ase pseudamin 99.1 1.9E-10 4.1E-15 82.3 7.0 69 65-134 43-115 (204)
8 PRK08287 cobalt-precorrin-6Y C 99.1 2.5E-10 5.4E-15 80.3 6.7 90 41-132 6-105 (187)
9 PRK06922 hypothetical protein; 99.1 2.6E-10 5.5E-15 92.9 7.2 108 25-134 377-497 (677)
10 PRK01683 trans-aconitate 2-met 99.1 9.8E-10 2.1E-14 80.8 9.5 80 53-134 20-103 (258)
11 PF13847 Methyltransf_31: Meth 99.1 2.8E-10 6E-15 77.5 5.2 68 65-134 3-83 (152)
12 PF05175 MTS: Methyltransferas 99.0 7.5E-10 1.6E-14 76.9 4.3 74 56-131 23-105 (170)
13 PRK15001 SAM-dependent 23S rib 98.9 2.5E-09 5.3E-14 82.9 6.9 76 54-131 218-305 (378)
14 TIGR02752 MenG_heptapren 2-hep 98.9 3.3E-09 7.3E-14 76.6 7.2 79 54-134 35-124 (231)
15 PRK15451 tRNA cmo(5)U34 methyl 98.9 1.5E-09 3.2E-14 79.7 5.2 68 65-133 56-134 (247)
16 TIGR00740 methyltransferase, p 98.9 2.5E-09 5.5E-14 77.9 6.1 69 65-134 53-132 (239)
17 COG2890 HemK Methylase of poly 98.9 1.8E-09 3.8E-14 80.8 5.0 63 68-131 113-183 (280)
18 COG2226 UbiE Methylase involve 98.9 4.7E-09 1E-13 76.6 6.8 70 65-135 51-130 (238)
19 TIGR02021 BchM-ChlM magnesium 98.9 4.3E-09 9.3E-14 75.7 6.3 105 27-134 16-129 (219)
20 PF08242 Methyltransf_12: Meth 98.9 4.9E-10 1.1E-14 70.8 1.0 64 70-134 1-76 (99)
21 TIGR03533 L3_gln_methyl protei 98.9 4.9E-09 1.1E-13 78.5 5.9 65 66-131 122-196 (284)
22 COG2242 CobL Precorrin-6B meth 98.8 1E-08 2.2E-13 71.9 6.4 73 57-131 27-109 (187)
23 PRK11805 N5-glutamine S-adenos 98.8 5.1E-09 1.1E-13 79.2 5.2 64 67-131 135-208 (307)
24 PRK11207 tellurite resistance 98.8 1E-08 2.2E-13 72.9 6.4 77 54-134 20-105 (197)
25 smart00138 MeTrc Methyltransfe 98.8 5.5E-08 1.2E-12 72.1 10.4 69 65-134 99-213 (264)
26 PLN02336 phosphoethanolamine N 98.8 1.5E-08 3.2E-13 80.6 7.8 78 54-134 256-342 (475)
27 PRK10258 biotin biosynthesis p 98.8 2.4E-08 5.3E-13 73.1 8.3 93 37-133 9-112 (251)
28 PF01209 Ubie_methyltran: ubiE 98.8 3.8E-09 8.3E-14 77.0 3.9 77 56-134 39-126 (233)
29 TIGR02469 CbiT precorrin-6Y C5 98.8 2.2E-08 4.7E-13 65.1 7.1 75 56-132 11-96 (124)
30 PRK00107 gidB 16S rRNA methylt 98.8 1.4E-08 2.9E-13 71.8 6.2 66 66-132 46-120 (187)
31 PTZ00098 phosphoethanolamine N 98.8 1.6E-08 3.5E-13 74.9 6.8 78 53-133 41-126 (263)
32 COG2813 RsmC 16S RNA G1207 met 98.8 2.5E-08 5.4E-13 74.6 7.6 77 53-131 147-231 (300)
33 TIGR00536 hemK_fam HemK family 98.8 1.1E-08 2.3E-13 76.6 5.6 64 67-131 116-189 (284)
34 PLN02244 tocopherol O-methyltr 98.8 2.6E-08 5.6E-13 76.4 7.5 68 64-133 117-195 (340)
35 TIGR00138 gidB 16S rRNA methyl 98.8 1.2E-08 2.5E-13 71.8 5.1 66 66-132 43-117 (181)
36 PRK11036 putative S-adenosyl-L 98.8 1.5E-08 3.3E-13 74.5 5.8 94 36-134 8-122 (255)
37 PLN02233 ubiquinone biosynthes 98.8 4.4E-08 9.6E-13 72.5 8.0 71 63-134 71-155 (261)
38 PRK08317 hypothetical protein; 98.8 3.4E-08 7.4E-13 70.9 7.2 78 55-134 10-97 (241)
39 PRK09489 rsmC 16S ribosomal RN 98.7 3.2E-08 7E-13 75.9 7.2 75 55-131 187-268 (342)
40 PRK14966 unknown domain/N5-glu 98.7 2.6E-08 5.7E-13 77.9 6.4 65 66-131 252-326 (423)
41 PRK06202 hypothetical protein; 98.7 7.6E-08 1.6E-12 69.8 8.4 70 64-134 59-139 (232)
42 smart00828 PKS_MT Methyltransf 98.7 1.8E-08 3.9E-13 72.5 5.0 66 67-133 1-76 (224)
43 PRK01544 bifunctional N5-gluta 98.7 2.3E-08 5E-13 80.3 5.5 64 66-130 139-212 (506)
44 PRK00216 ubiE ubiquinone/menaq 98.7 8.3E-08 1.8E-12 69.2 7.9 78 55-134 42-131 (239)
45 TIGR03534 RF_mod_PrmC protein- 98.7 4.4E-08 9.6E-13 71.4 6.3 64 66-130 88-160 (251)
46 TIGR02072 BioC biotin biosynth 98.7 4.5E-08 9.7E-13 70.5 6.1 68 66-134 35-108 (240)
47 PRK04457 spermidine synthase; 98.7 3.4E-08 7.3E-13 73.2 5.4 66 65-131 66-143 (262)
48 PRK13944 protein-L-isoaspartat 98.7 1E-07 2.3E-12 68.1 7.5 78 54-133 62-151 (205)
49 COG4123 Predicted O-methyltran 98.7 2.7E-08 5.9E-13 72.9 4.5 75 56-131 35-122 (248)
50 PRK13942 protein-L-isoaspartat 98.7 1.2E-07 2.5E-12 68.2 7.7 78 53-132 65-153 (212)
51 TIGR00080 pimt protein-L-isoas 98.7 1.1E-07 2.3E-12 68.4 7.5 77 54-132 67-154 (215)
52 smart00650 rADc Ribosomal RNA 98.7 9.4E-08 2E-12 66.2 6.9 73 54-130 3-83 (169)
53 TIGR03704 PrmC_rel_meth putati 98.7 6.4E-08 1.4E-12 71.3 6.2 64 67-131 88-160 (251)
54 PF08241 Methyltransf_11: Meth 98.7 4.5E-08 9.7E-13 60.5 4.6 63 70-134 1-70 (95)
55 PRK09328 N5-glutamine S-adenos 98.6 8.5E-08 1.9E-12 70.9 6.5 66 64-130 107-181 (275)
56 PF13649 Methyltransf_25: Meth 98.6 5.2E-08 1.1E-12 61.8 4.3 61 69-131 1-74 (101)
57 TIGR00477 tehB tellurite resis 98.6 1.1E-07 2.3E-12 67.5 6.2 77 54-134 20-104 (195)
58 PLN02490 MPBQ/MSBQ methyltrans 98.6 9.6E-08 2.1E-12 73.2 6.2 68 66-134 114-188 (340)
59 PRK05785 hypothetical protein; 98.6 1.3E-07 2.7E-12 68.7 6.2 65 66-134 52-120 (226)
60 PRK14121 tRNA (guanine-N(7)-)- 98.6 1.4E-07 3E-12 73.3 6.8 74 56-131 114-199 (390)
61 PRK14896 ksgA 16S ribosomal RN 98.6 1.4E-07 3.1E-12 69.7 6.5 74 53-130 18-97 (258)
62 TIGR00537 hemK_rel_arch HemK-r 98.6 1E-07 2.2E-12 66.6 5.4 64 65-131 19-89 (179)
63 PRK00274 ksgA 16S ribosomal RN 98.6 1.2E-07 2.6E-12 70.6 6.0 65 53-121 31-99 (272)
64 PRK07402 precorrin-6B methylas 98.6 1.2E-07 2.5E-12 67.2 5.6 73 56-130 32-115 (196)
65 TIGR00091 tRNA (guanine-N(7)-) 98.6 7.3E-08 1.6E-12 68.3 4.5 65 66-131 17-94 (194)
66 PF05401 NodS: Nodulation prot 98.6 5E-08 1.1E-12 69.0 3.5 72 59-134 38-116 (201)
67 PHA03411 putative methyltransf 98.6 1.5E-07 3.3E-12 70.0 6.1 65 66-131 65-133 (279)
68 PRK07580 Mg-protoporphyrin IX 98.6 2.2E-07 4.7E-12 66.9 6.4 67 64-134 62-137 (230)
69 TIGR01934 MenG_MenH_UbiE ubiqu 98.5 2.9E-07 6.2E-12 65.7 6.8 78 55-134 30-116 (223)
70 PLN03075 nicotianamine synthas 98.5 2.7E-07 5.8E-12 69.4 6.7 66 65-131 123-202 (296)
71 PRK12335 tellurite resistance 98.5 2E-07 4.3E-12 69.9 5.9 76 55-134 111-194 (287)
72 PRK11088 rrmA 23S rRNA methylt 98.5 3.3E-07 7.2E-12 68.1 7.1 65 65-130 85-157 (272)
73 PF07021 MetW: Methionine bios 98.5 1.5E-07 3.2E-12 66.4 4.5 67 65-134 13-85 (193)
74 PRK00121 trmB tRNA (guanine-N( 98.5 1.7E-07 3.7E-12 66.8 4.6 66 65-131 40-118 (202)
75 TIGR00755 ksgA dimethyladenosi 98.5 3.8E-07 8.3E-12 67.1 6.4 77 53-133 18-102 (253)
76 PHA03412 putative methyltransf 98.5 3.2E-07 7E-12 66.9 5.8 65 66-131 50-121 (241)
77 KOG1540 Ubiquinone biosynthesi 98.5 7.5E-07 1.6E-11 65.4 7.6 73 56-131 92-184 (296)
78 PF13659 Methyltransf_26: Meth 98.5 1.2E-07 2.7E-12 61.2 2.9 63 67-131 2-77 (117)
79 COG2263 Predicted RNA methylas 98.5 4.3E-07 9.2E-12 63.9 5.6 63 67-131 47-115 (198)
80 PRK15068 tRNA mo(5)U34 methylt 98.5 4.4E-07 9.6E-12 69.1 6.2 66 66-134 123-199 (322)
81 PRK11873 arsM arsenite S-adeno 98.4 5.8E-07 1.3E-11 66.6 6.5 71 63-134 75-156 (272)
82 TIGR02081 metW methionine bios 98.4 5.1E-07 1.1E-11 63.8 5.9 66 66-134 14-85 (194)
83 PLN02336 phosphoethanolamine N 98.4 6.2E-07 1.3E-11 71.4 6.9 79 52-134 25-113 (475)
84 PRK04266 fibrillarin; Provisio 98.4 2.3E-06 4.9E-11 62.2 8.9 69 60-130 68-147 (226)
85 PRK14967 putative methyltransf 98.4 5.6E-07 1.2E-11 65.0 5.5 67 63-131 34-108 (223)
86 PLN02396 hexaprenyldihydroxybe 98.4 2.5E-07 5.4E-12 70.5 3.8 65 67-134 133-208 (322)
87 PRK00312 pcm protein-L-isoaspa 98.4 1.5E-06 3.2E-11 62.2 7.4 74 55-132 69-152 (212)
88 PRK00377 cbiT cobalt-precorrin 98.4 6.5E-07 1.4E-11 63.6 5.4 71 58-130 34-117 (198)
89 PTZ00338 dimethyladenosine tra 98.4 9.2E-07 2E-11 66.6 6.5 74 53-130 25-107 (294)
90 COG2230 Cfa Cyclopropane fatty 98.4 9.4E-07 2E-11 66.0 6.3 73 53-129 61-142 (283)
91 PF08123 DOT1: Histone methyla 98.4 4.1E-07 8.8E-12 65.2 3.8 79 55-135 33-133 (205)
92 PLN02672 methionine S-methyltr 98.4 4.8E-07 1E-11 77.9 4.8 63 67-130 120-209 (1082)
93 PLN02585 magnesium protoporphy 98.4 7.7E-07 1.7E-11 67.6 5.3 65 66-134 145-222 (315)
94 PRK11705 cyclopropane fatty ac 98.3 1.4E-06 3E-11 67.9 6.8 74 55-132 158-236 (383)
95 PRK14968 putative methyltransf 98.3 1.3E-06 2.8E-11 60.8 5.9 65 64-131 22-97 (188)
96 PLN02366 spermidine synthase 98.3 1.1E-06 2.3E-11 66.7 5.6 67 64-131 90-172 (308)
97 PF02353 CMAS: Mycolic acid cy 98.3 8.6E-07 1.9E-11 66.1 4.9 75 53-131 51-134 (273)
98 PRK13943 protein-L-isoaspartat 98.3 1.9E-06 4.2E-11 65.6 6.7 75 55-131 71-156 (322)
99 KOG2904 Predicted methyltransf 98.3 1.2E-06 2.5E-11 65.0 5.2 66 63-129 146-227 (328)
100 TIGR00452 methyltransferase, p 98.3 1.9E-06 4E-11 65.5 5.9 67 65-134 121-198 (314)
101 KOG1270 Methyltransferases [Co 98.2 4.7E-07 1E-11 66.6 2.0 65 67-134 91-168 (282)
102 PRK13168 rumA 23S rRNA m(5)U19 98.2 1.9E-06 4.1E-11 68.3 5.5 72 55-130 288-373 (443)
103 TIGR03438 probable methyltrans 98.2 1.7E-06 3.6E-11 65.4 4.8 64 54-121 55-127 (301)
104 PF03848 TehB: Tellurite resis 98.2 2.6E-06 5.7E-11 60.4 5.5 76 54-133 20-103 (192)
105 PRK00811 spermidine synthase; 98.2 1.4E-06 3.1E-11 65.2 4.2 67 64-131 75-157 (283)
106 PRK04148 hypothetical protein; 98.2 6E-06 1.3E-10 55.3 6.5 72 55-131 7-84 (134)
107 KOG1271 Methyltransferases [Ge 98.2 2.4E-06 5.3E-11 59.9 4.7 65 66-131 68-143 (227)
108 PRK11188 rrmJ 23S rRNA methylt 98.2 1E-05 2.2E-10 58.1 8.1 71 56-131 42-124 (209)
109 PF01135 PCMT: Protein-L-isoas 98.2 1.8E-06 3.8E-11 62.1 4.1 77 53-131 61-148 (209)
110 PRK10909 rsmD 16S rRNA m(2)G96 98.2 1.5E-06 3.2E-11 62.0 3.6 64 66-131 54-128 (199)
111 TIGR00406 prmA ribosomal prote 98.2 4.1E-06 8.9E-11 62.9 6.1 64 66-131 160-232 (288)
112 cd02440 AdoMet_MTases S-adenos 98.2 6E-06 1.3E-10 50.7 5.6 65 68-134 1-76 (107)
113 PRK01581 speE spermidine synth 98.2 2.2E-06 4.7E-11 66.2 4.1 67 64-131 149-233 (374)
114 PF13489 Methyltransf_23: Meth 98.2 6.9E-06 1.5E-10 55.5 6.2 64 64-134 21-88 (161)
115 TIGR00438 rrmJ cell division p 98.1 1.4E-05 3E-10 56.2 7.7 70 56-130 23-104 (188)
116 PRK03522 rumB 23S rRNA methylu 98.1 2.3E-06 5E-11 65.0 3.8 63 66-131 174-247 (315)
117 TIGR03840 TMPT_Se_Te thiopurin 98.1 1.8E-05 3.9E-10 57.0 7.9 65 64-131 33-120 (213)
118 COG2518 Pcm Protein-L-isoaspar 98.1 1.2E-05 2.5E-10 57.6 6.6 75 53-131 61-145 (209)
119 PRK03612 spermidine synthase; 98.1 6.3E-06 1.4E-10 66.6 5.6 66 64-131 296-380 (521)
120 PF02390 Methyltransf_4: Putat 98.1 5.1E-06 1.1E-10 59.1 4.2 53 67-120 19-78 (195)
121 PRK00050 16S rRNA m(4)C1402 me 98.1 9.5E-06 2.1E-10 61.2 5.8 66 53-120 8-79 (296)
122 PTZ00146 fibrillarin; Provisio 98.1 3.1E-05 6.7E-10 58.2 8.5 78 53-131 118-209 (293)
123 PRK00517 prmA ribosomal protei 98.1 6.6E-06 1.4E-10 60.5 4.7 42 65-108 119-161 (250)
124 PRK14902 16S rRNA methyltransf 98.0 1.1E-05 2.4E-10 64.0 6.0 73 56-130 242-326 (444)
125 COG2264 PrmA Ribosomal protein 98.0 7.2E-06 1.6E-10 61.7 4.6 50 55-108 154-204 (300)
126 PF06325 PrmA: Ribosomal prote 98.0 6.9E-06 1.5E-10 61.9 4.4 49 56-108 154-203 (295)
127 PLN02781 Probable caffeoyl-CoA 98.0 9.1E-06 2E-10 59.3 4.8 68 63-131 66-151 (234)
128 PRK11727 23S rRNA mA1618 methy 98.0 1.2E-05 2.6E-10 61.3 5.3 65 65-130 114-195 (321)
129 COG2227 UbiG 2-polyprenyl-3-me 98.0 3.4E-06 7.5E-11 61.4 2.2 65 67-134 61-134 (243)
130 PRK10901 16S rRNA methyltransf 98.0 1.6E-05 3.5E-10 62.8 6.0 73 56-130 236-319 (427)
131 TIGR01177 conserved hypothetic 98.0 2.1E-05 4.5E-10 60.1 6.2 73 54-130 172-254 (329)
132 PRK05134 bifunctional 3-demeth 98.0 1.4E-05 3E-10 57.8 5.0 67 65-134 48-124 (233)
133 TIGR00479 rumA 23S rRNA (uraci 98.0 8.7E-06 1.9E-10 64.3 4.0 71 56-130 284-368 (431)
134 KOG3420 Predicted RNA methylas 97.9 1.4E-05 3E-10 54.2 4.3 72 57-131 41-121 (185)
135 PRK13255 thiopurine S-methyltr 97.9 3.5E-05 7.6E-10 55.7 6.5 66 63-131 35-123 (218)
136 KOG0820 Ribosomal RNA adenine 97.9 3.6E-05 7.9E-10 57.1 6.1 75 52-130 46-129 (315)
137 TIGR00478 tly hemolysin TlyA f 97.9 5.6E-05 1.2E-09 55.1 7.0 78 53-133 63-152 (228)
138 TIGR00417 speE spermidine synt 97.9 1.8E-05 4E-10 58.8 4.6 67 64-131 71-152 (270)
139 TIGR02085 meth_trns_rumB 23S r 97.9 4.8E-06 1E-10 64.7 1.4 62 66-130 234-306 (374)
140 PF09243 Rsm22: Mitochondrial 97.9 2.1E-05 4.6E-10 58.7 4.4 81 54-135 23-113 (274)
141 PRK14904 16S rRNA methyltransf 97.8 4.2E-05 9.1E-10 60.7 6.1 67 63-130 248-324 (445)
142 COG0421 SpeE Spermidine syntha 97.8 3E-05 6.5E-10 58.1 4.8 68 63-131 74-156 (282)
143 PF09445 Methyltransf_15: RNA 97.8 6.4E-06 1.4E-10 57.0 1.1 62 67-131 1-76 (163)
144 PF05185 PRMT5: PRMT5 arginine 97.8 4.5E-05 9.9E-10 60.6 5.5 94 28-130 153-264 (448)
145 PLN02823 spermine synthase 97.8 3.9E-05 8.5E-10 58.9 4.8 66 65-131 103-183 (336)
146 COG2519 GCD14 tRNA(1-methylade 97.8 0.00014 3E-09 53.5 7.3 88 41-130 67-169 (256)
147 TIGR01983 UbiG ubiquinone bios 97.8 4E-05 8.8E-10 54.9 4.5 66 66-134 46-122 (224)
148 KOG1541 Predicted protein carb 97.8 1.5E-05 3.2E-10 57.6 2.0 55 66-123 51-107 (270)
149 TIGR02143 trmA_only tRNA (urac 97.7 2.6E-05 5.5E-10 60.3 3.4 51 67-120 199-256 (353)
150 COG1352 CheR Methylase of chem 97.7 0.00035 7.5E-09 52.1 8.7 107 27-134 46-212 (268)
151 KOG1500 Protein arginine N-met 97.7 6.2E-05 1.3E-09 57.6 4.6 72 55-130 168-249 (517)
152 COG0220 Predicted S-adenosylme 97.7 6.6E-05 1.4E-09 54.7 4.6 52 67-119 50-108 (227)
153 COG0030 KsgA Dimethyladenosine 97.7 0.00019 4E-09 53.2 7.0 68 53-124 19-92 (259)
154 PRK15128 23S rRNA m(5)C1962 me 97.7 3.4E-05 7.3E-10 60.5 3.3 65 65-131 220-300 (396)
155 COG4262 Predicted spermidine s 97.7 9.5E-05 2.1E-09 57.1 5.3 65 65-130 289-371 (508)
156 TIGR01444 fkbM_fam methyltrans 97.7 6.7E-05 1.5E-09 50.1 4.0 50 68-118 1-57 (143)
157 PRK11783 rlmL 23S rRNA m(2)G24 97.6 4.3E-05 9.2E-10 63.9 3.5 64 65-130 538-614 (702)
158 PF00398 RrnaAD: Ribosomal RNA 97.6 7.7E-05 1.7E-09 55.2 4.3 66 52-121 18-88 (262)
159 PRK05031 tRNA (uracil-5-)-meth 97.6 3.5E-05 7.6E-10 59.7 2.5 51 67-120 208-265 (362)
160 PRK00536 speE spermidine synth 97.6 0.00015 3.2E-09 53.9 5.4 63 64-131 71-146 (262)
161 KOG2899 Predicted methyltransf 97.6 7.3E-05 1.6E-09 54.7 3.7 54 54-108 46-101 (288)
162 PRK13256 thiopurine S-methyltr 97.6 0.00034 7.3E-09 50.9 7.1 65 65-132 43-132 (226)
163 TIGR00095 RNA methyltransferas 97.6 4.7E-05 1E-09 53.9 2.6 54 66-121 50-111 (189)
164 PF01739 CheR: CheR methyltran 97.6 0.00043 9.4E-09 49.3 7.4 69 65-134 31-146 (196)
165 KOG3010 Methyltransferase [Gen 97.6 7.6E-05 1.6E-09 54.5 3.5 44 66-112 34-78 (261)
166 KOG1499 Protein arginine N-met 97.6 0.0001 2.2E-09 56.3 4.3 65 66-132 61-135 (346)
167 PRK14901 16S rRNA methyltransf 97.5 0.00019 4.2E-09 56.8 5.7 71 58-130 246-331 (434)
168 TIGR00563 rsmB ribosomal RNA s 97.5 0.00013 2.9E-09 57.6 4.7 73 56-130 230-315 (426)
169 TIGR00446 nop2p NOL1/NOP2/sun 97.5 0.00025 5.3E-09 52.7 5.7 67 63-130 69-146 (264)
170 PF13679 Methyltransf_32: Meth 97.5 0.00015 3.3E-09 48.8 4.2 55 64-119 24-92 (141)
171 PRK14903 16S rRNA methyltransf 97.5 0.00022 4.9E-09 56.5 5.3 70 59-130 232-313 (431)
172 PF08704 GCD14: tRNA methyltra 97.5 0.00039 8.4E-09 51.3 6.0 90 39-130 11-119 (247)
173 COG4976 Predicted methyltransf 97.4 6.7E-05 1.4E-09 54.6 1.8 51 54-108 115-166 (287)
174 PF08003 Methyltransf_9: Prote 97.4 0.00069 1.5E-08 51.2 7.2 68 63-134 114-192 (315)
175 PF04816 DUF633: Family of unk 97.4 0.00012 2.6E-09 52.5 3.0 62 69-131 1-73 (205)
176 PF05724 TPMT: Thiopurine S-me 97.4 0.00039 8.5E-09 50.3 5.4 66 63-131 35-123 (218)
177 KOG2361 Predicted methyltransf 97.4 0.00017 3.8E-09 52.7 3.5 67 67-134 73-154 (264)
178 PLN02476 O-methyltransferase 97.4 0.00019 4.1E-09 53.8 3.6 68 63-131 116-201 (278)
179 PF01596 Methyltransf_3: O-met 97.4 9.1E-05 2E-09 53.1 1.7 67 64-131 44-128 (205)
180 PRK11760 putative 23S rRNA C24 97.4 0.00087 1.9E-08 51.5 7.0 64 65-131 211-277 (357)
181 PF12147 Methyltransf_20: Puta 97.3 0.00063 1.4E-08 51.1 5.9 68 65-133 135-218 (311)
182 PF10294 Methyltransf_16: Puta 97.3 0.0003 6.6E-09 49.0 3.9 69 65-134 45-129 (173)
183 PRK01544 bifunctional N5-gluta 97.2 0.00078 1.7E-08 54.5 5.1 52 66-118 348-406 (506)
184 PF01564 Spermine_synth: Sperm 97.1 0.00042 9.1E-09 51.0 3.1 65 65-130 76-156 (246)
185 COG4076 Predicted RNA methylas 97.1 0.0013 2.7E-08 46.8 4.7 62 67-131 34-103 (252)
186 KOG3191 Predicted N6-DNA-methy 97.0 0.0013 2.7E-08 46.4 4.4 65 66-131 44-117 (209)
187 PRK04338 N(2),N(2)-dimethylgua 97.0 0.00065 1.4E-08 53.1 3.3 63 67-130 59-131 (382)
188 COG4122 Predicted O-methyltran 96.8 0.0013 2.8E-08 47.7 3.5 68 63-131 57-139 (219)
189 PLN02589 caffeoyl-CoA O-methyl 96.8 0.00093 2E-08 49.3 2.7 68 63-131 77-163 (247)
190 PRK11783 rlmL 23S rRNA m(2)G24 96.8 0.0038 8.3E-08 52.4 6.6 76 53-130 178-309 (702)
191 PF01170 UPF0020: Putative RNA 96.8 0.0019 4.1E-08 45.3 3.9 75 55-130 19-112 (179)
192 PF02475 Met_10: Met-10+ like- 96.7 0.0015 3.3E-08 46.7 3.2 68 64-132 100-177 (200)
193 COG0293 FtsJ 23S rRNA methylas 96.7 0.0051 1.1E-07 44.1 5.4 65 53-121 33-97 (205)
194 COG3963 Phospholipid N-methylt 96.7 0.0039 8.6E-08 43.4 4.6 67 52-120 36-105 (194)
195 KOG3115 Methyltransferase-like 96.7 0.0009 1.9E-08 48.0 1.5 31 67-98 62-92 (249)
196 TIGR00006 S-adenosyl-methyltra 96.6 0.0055 1.2E-07 46.6 5.6 65 53-119 9-79 (305)
197 PRK10611 chemotaxis methyltran 96.6 0.0048 1.1E-07 46.5 5.2 67 67-134 117-233 (287)
198 KOG2187 tRNA uracil-5-methyltr 96.6 0.0019 4.2E-08 51.8 3.0 56 63-121 381-446 (534)
199 KOG1661 Protein-L-isoaspartate 96.5 0.0055 1.2E-07 44.1 4.9 68 63-131 80-169 (237)
200 PF07757 AdoMet_MTase: Predict 96.5 0.0024 5.3E-08 41.1 2.7 31 65-98 58-88 (112)
201 PF01795 Methyltransf_5: MraW 96.5 0.0055 1.2E-07 46.6 5.0 65 53-119 9-79 (310)
202 PF05148 Methyltransf_8: Hypot 96.5 0.003 6.5E-08 45.5 3.4 93 27-132 30-130 (219)
203 KOG4300 Predicted methyltransf 96.5 0.0023 4.9E-08 46.1 2.8 93 37-133 49-154 (252)
204 COG0357 GidB Predicted S-adeno 96.4 0.0036 7.9E-08 45.2 3.4 67 66-133 68-144 (215)
205 KOG2730 Methylase [General fun 96.4 0.0023 5.1E-08 46.4 2.2 54 65-121 94-155 (263)
206 PF07091 FmrO: Ribosomal RNA m 96.3 0.0039 8.3E-08 46.0 3.2 67 65-132 105-179 (251)
207 PF01728 FtsJ: FtsJ-like methy 96.3 0.0055 1.2E-07 42.6 3.8 47 54-101 10-59 (181)
208 PF02527 GidB: rRNA small subu 96.3 0.0036 7.9E-08 44.2 2.7 65 68-133 51-124 (184)
209 COG2384 Predicted SAM-dependen 96.2 0.008 1.7E-07 43.5 4.2 64 67-131 18-92 (226)
210 PF03602 Cons_hypoth95: Conser 96.2 0.0028 6E-08 44.7 1.7 63 66-130 43-120 (183)
211 COG0275 Predicted S-adenosylme 96.1 0.017 3.6E-07 43.8 5.5 65 53-118 12-82 (314)
212 COG5459 Predicted rRNA methyla 95.9 0.0029 6.3E-08 48.9 1.0 75 59-134 108-192 (484)
213 PF02384 N6_Mtase: N-6 DNA Met 95.9 0.011 2.3E-07 44.6 3.8 67 63-130 44-131 (311)
214 COG3897 Predicted methyltransf 95.8 0.023 5E-07 40.6 5.0 71 63-135 77-153 (218)
215 PF05958 tRNA_U5-meth_tr: tRNA 95.8 0.005 1.1E-07 47.6 1.9 59 54-117 187-252 (352)
216 KOG2915 tRNA(1-methyladenosine 95.8 0.048 1E-06 40.9 6.9 91 39-131 76-184 (314)
217 TIGR00308 TRM1 tRNA(guanine-26 95.7 0.0085 1.8E-07 46.8 2.7 64 67-130 46-120 (374)
218 TIGR02987 met_A_Alw26 type II 95.7 0.014 3E-07 47.4 3.9 54 66-120 32-100 (524)
219 KOG4058 Uncharacterized conser 95.3 0.013 2.8E-07 40.2 2.0 66 53-121 61-134 (199)
220 PF06080 DUF938: Protein of un 95.2 0.025 5.3E-07 40.6 3.4 34 64-98 23-57 (204)
221 KOG3045 Predicted RNA methylas 95.2 0.067 1.5E-06 40.0 5.7 89 28-131 139-235 (325)
222 PF05219 DREV: DREV methyltran 94.7 0.086 1.9E-06 39.2 5.2 65 66-134 95-161 (265)
223 COG0116 Predicted N6-adenine-s 94.6 0.11 2.3E-06 40.7 5.8 78 53-131 180-306 (381)
224 COG2265 TrmA SAM-dependent met 94.5 0.041 8.9E-07 43.8 3.4 71 56-130 285-368 (432)
225 TIGR03439 methyl_EasF probable 94.2 0.12 2.6E-06 39.6 5.1 65 53-121 67-144 (319)
226 KOG3924 Putative protein methy 93.9 0.043 9.3E-07 43.0 2.4 78 56-135 184-283 (419)
227 PF04672 Methyltransf_19: S-ad 93.7 0.069 1.5E-06 39.9 2.9 56 65-121 68-133 (267)
228 PRK10742 putative methyltransf 93.1 0.17 3.7E-06 37.4 4.3 74 53-130 75-170 (250)
229 KOG0822 Protein kinase inhibit 92.8 0.38 8.2E-06 39.4 6.0 95 28-129 335-444 (649)
230 COG2521 Predicted archaeal met 92.8 0.13 2.8E-06 38.0 3.1 63 65-129 134-210 (287)
231 PF03291 Pox_MCEL: mRNA cappin 92.6 0.12 2.7E-06 39.7 3.1 80 37-121 37-133 (331)
232 PF05891 Methyltransf_PK: AdoM 92.6 0.12 2.6E-06 37.4 2.8 68 65-134 55-132 (218)
233 COG1565 Uncharacterized conser 92.3 0.27 5.8E-06 38.3 4.4 60 35-100 52-119 (370)
234 PF03141 Methyltransf_29: Puta 92.2 0.11 2.5E-06 41.9 2.5 24 64-87 116-139 (506)
235 KOG1709 Guanidinoacetate methy 92.1 0.29 6.3E-06 35.7 4.2 73 43-118 81-158 (271)
236 KOG4589 Cell division protein 92.0 0.39 8.5E-06 34.3 4.6 41 58-99 62-103 (232)
237 COG0742 N6-adenine-specific me 91.6 0.38 8.2E-06 34.1 4.3 63 66-130 44-120 (187)
238 COG1189 Predicted rRNA methyla 91.3 0.73 1.6E-05 33.9 5.6 43 54-98 68-110 (245)
239 KOG2651 rRNA adenine N-6-methy 91.1 0.27 5.9E-06 38.6 3.4 43 55-99 143-185 (476)
240 COG2520 Predicted methyltransf 91.0 0.28 6.2E-06 37.9 3.4 66 66-133 189-265 (341)
241 KOG2940 Predicted methyltransf 90.2 0.45 9.7E-06 35.2 3.6 42 65-108 72-114 (325)
242 PF05206 TRM13: Methyltransfer 90.0 0.93 2E-05 33.8 5.3 35 63-98 16-55 (259)
243 COG1092 Predicted SAM-dependen 89.5 0.22 4.8E-06 39.2 1.8 63 66-130 218-296 (393)
244 KOG1975 mRNA cap methyltransfe 89.4 0.37 8E-06 37.2 2.8 56 64-121 116-184 (389)
245 PF05971 Methyltransf_10: Prot 89.3 0.23 5E-06 37.7 1.7 56 66-122 103-171 (299)
246 COG0500 SmtA SAM-dependent met 89.2 0.86 1.9E-05 28.7 4.3 50 69-120 52-109 (257)
247 PRK11933 yebU rRNA (cytosine-C 88.5 1.3 2.9E-05 35.7 5.6 68 63-130 111-189 (470)
248 KOG1501 Arginine N-methyltrans 88.1 0.56 1.2E-05 37.7 3.1 40 66-107 67-107 (636)
249 PF01861 DUF43: Protein of unk 87.1 0.64 1.4E-05 34.3 2.7 72 55-130 36-118 (243)
250 PF03059 NAS: Nicotianamine sy 87.0 0.96 2.1E-05 34.0 3.7 66 66-132 121-200 (276)
251 PF02636 Methyltransf_28: Puta 86.7 0.65 1.4E-05 34.1 2.7 32 66-98 19-58 (252)
252 PF11312 DUF3115: Protein of u 86.3 3.3 7.1E-05 31.8 6.3 31 67-98 88-138 (315)
253 KOG1562 Spermidine synthase [A 86.0 0.46 1E-05 36.1 1.6 67 63-130 119-201 (337)
254 KOG2793 Putative N2,N2-dimethy 85.2 2.3 5E-05 31.5 4.9 39 66-106 87-125 (248)
255 PF13578 Methyltransf_24: Meth 85.0 0.66 1.4E-05 29.1 1.8 61 70-130 1-75 (106)
256 PLN02668 indole-3-acetate carb 84.3 1.4 3.1E-05 34.7 3.7 34 65-99 63-111 (386)
257 PF11599 AviRa: RRNA methyltra 83.8 1.2 2.6E-05 32.5 2.8 45 64-108 50-96 (246)
258 PF04072 LCM: Leucine carboxyl 83.4 1.6 3.5E-05 30.4 3.4 56 65-121 78-142 (183)
259 PF03514 GRAS: GRAS domain fam 82.6 1.4 2.9E-05 34.6 2.9 45 53-99 99-150 (374)
260 KOG2352 Predicted spermine/spe 82.3 0.63 1.4E-05 37.5 1.0 72 33-108 266-338 (482)
261 KOG1663 O-methyltransferase [S 81.5 1.8 3.9E-05 31.8 3.0 59 64-122 72-138 (237)
262 COG1255 Uncharacterized protei 81.1 8.8 0.00019 25.2 5.8 60 65-130 13-76 (129)
263 PF10672 Methyltrans_SAM: S-ad 78.3 1.7 3.7E-05 32.8 2.2 64 65-130 123-201 (286)
264 KOG1331 Predicted methyltransf 76.6 1.6 3.5E-05 33.0 1.6 74 40-121 17-97 (293)
265 cd02190 epsilon_tubulin The tu 76.5 6.2 0.00014 31.0 4.9 39 53-91 89-132 (379)
266 COG1064 AdhP Zn-dependent alco 76.5 2.6 5.6E-05 32.7 2.7 62 66-129 167-234 (339)
267 PF11968 DUF3321: Putative met 76.4 1.5 3.3E-05 31.8 1.4 57 67-135 53-115 (219)
268 PF02153 PDH: Prephenate dehyd 76.2 1.5 3.2E-05 32.4 1.3 51 79-131 1-52 (258)
269 TIGR03739 PRTRC_D PRTRC system 74.8 13 0.00029 28.2 6.2 46 54-100 262-307 (320)
270 COG2933 Predicted SAM-dependen 74.3 4.4 9.6E-05 30.6 3.3 55 66-123 212-266 (358)
271 PF12692 Methyltransf_17: S-ad 73.5 13 0.00027 25.6 5.1 56 39-98 5-60 (160)
272 PF04989 CmcI: Cephalosporin h 72.4 5.6 0.00012 28.7 3.4 55 66-121 33-97 (206)
273 PF05050 Methyltransf_21: Meth 72.3 6.4 0.00014 26.1 3.6 32 71-103 1-37 (167)
274 PF04445 SAM_MT: Putative SAM- 72.1 6.3 0.00014 29.0 3.7 75 53-131 62-158 (234)
275 PF03492 Methyltransf_7: SAM d 71.7 6.8 0.00015 30.2 4.0 69 63-132 14-115 (334)
276 PF02254 TrkA_N: TrkA-N domain 71.6 2.5 5.5E-05 26.7 1.4 46 74-121 4-52 (116)
277 PRK13917 plasmid segregation p 71.2 14 0.0003 28.5 5.6 56 41-99 267-322 (344)
278 KOG2920 Predicted methyltransf 71.1 3.3 7.1E-05 31.3 2.1 35 66-102 117-152 (282)
279 PF03686 UPF0146: Uncharacteri 71.0 7.3 0.00016 25.9 3.5 57 66-130 14-76 (127)
280 TIGR00027 mthyl_TIGR00027 meth 70.9 4.2 9.2E-05 30.2 2.6 52 65-119 81-142 (260)
281 PF01358 PARP_regulatory: Poly 70.6 6.7 0.00014 29.8 3.6 56 65-121 58-116 (294)
282 cd02188 gamma_tubulin Gamma-tu 70.3 9.5 0.00021 30.5 4.6 38 54-91 121-163 (431)
283 cd00286 Tubulin_FtsZ Tubulin/F 70.1 12 0.00026 28.6 5.0 38 54-91 80-122 (328)
284 KOG2918 Carboxymethyl transfer 69.6 6.3 0.00014 30.3 3.3 40 64-104 86-127 (335)
285 TIGR01470 cysG_Nterm siroheme 69.2 16 0.00034 26.1 5.2 61 67-131 10-76 (205)
286 KOG1098 Putative SAM-dependent 69.1 6.7 0.00014 33.0 3.6 45 56-100 35-79 (780)
287 cd06059 Tubulin The tubulin su 68.6 13 0.00029 29.0 5.1 39 53-91 79-122 (382)
288 PRK09273 hypothetical protein; 67.0 5.9 0.00013 28.7 2.6 40 67-107 64-103 (211)
289 COG1063 Tdh Threonine dehydrog 66.8 6.7 0.00015 30.2 3.1 41 67-108 170-212 (350)
290 PF01269 Fibrillarin: Fibrilla 66.1 23 0.00049 26.0 5.4 58 63-121 71-134 (229)
291 PRK06719 precorrin-2 dehydroge 65.8 19 0.00042 24.5 4.9 60 67-130 14-76 (157)
292 TIGR03329 Phn_aa_oxid putative 65.6 7.5 0.00016 31.0 3.2 33 67-100 25-59 (460)
293 PRK07502 cyclohexadienyl dehyd 65.5 13 0.00027 28.0 4.3 64 67-131 7-73 (307)
294 COG1088 RfbB dTDP-D-glucose 4, 65.2 20 0.00044 27.6 5.2 48 72-120 5-62 (340)
295 PF06406 StbA: StbA protein; 64.8 7.8 0.00017 29.5 3.1 61 39-100 246-308 (318)
296 PLN00220 tubulin beta chain; P 64.6 16 0.00034 29.4 4.9 38 54-91 121-163 (447)
297 KOG2782 Putative SAM dependent 63.7 6 0.00013 29.2 2.1 51 54-106 33-84 (303)
298 cd08283 FDH_like_1 Glutathione 62.6 12 0.00027 28.9 3.9 44 63-107 182-227 (386)
299 cd00315 Cyt_C5_DNA_methylase C 62.5 18 0.00038 27.0 4.6 61 68-131 2-69 (275)
300 COG1889 NOP1 Fibrillarin-like 62.5 40 0.00086 24.6 6.0 65 54-119 63-134 (231)
301 cd02187 beta_tubulin The tubul 61.8 20 0.00043 28.6 4.9 36 56-91 122-162 (425)
302 PF02502 LacAB_rpiB: Ribose/Ga 61.8 7.6 0.00016 26.2 2.2 49 69-118 59-109 (140)
303 TIGR01120 rpiB ribose 5-phosph 61.7 10 0.00022 25.7 2.9 49 69-118 59-109 (143)
304 PRK06475 salicylate hydroxylas 61.6 11 0.00023 29.4 3.4 31 67-98 3-33 (400)
305 TIGR00689 rpiB_lacA_lacB sugar 61.5 10 0.00022 25.7 2.8 48 70-118 59-108 (144)
306 PRK06847 hypothetical protein; 61.4 13 0.00028 28.4 3.8 32 66-98 4-35 (375)
307 PHA01634 hypothetical protein 61.4 18 0.00039 24.4 3.9 39 67-107 30-69 (156)
308 PTZ00387 epsilon tubulin; Prov 60.6 19 0.00042 29.1 4.7 39 53-91 121-164 (465)
309 PTZ00357 methyltransferase; Pr 60.6 20 0.00044 30.9 4.9 55 67-121 702-775 (1072)
310 PRK07417 arogenate dehydrogena 60.5 14 0.00029 27.5 3.6 59 69-131 3-64 (279)
311 PRK05571 ribose-5-phosphate is 60.4 11 0.00024 25.7 2.9 46 72-118 64-111 (148)
312 cd00006 PTS_IIA_man PTS_IIA, P 59.9 19 0.00042 23.2 3.9 51 56-106 50-101 (122)
313 PF01555 N6_N4_Mtase: DNA meth 59.5 17 0.00037 25.3 3.9 48 53-105 181-229 (231)
314 PRK11908 NAD-dependent epimera 59.0 28 0.0006 26.4 5.2 51 68-120 3-57 (347)
315 PF13460 NAD_binding_10: NADH( 58.2 25 0.00054 23.7 4.5 55 72-130 3-66 (183)
316 cd02189 delta_tubulin The tubu 58.1 22 0.00047 28.6 4.6 38 54-91 117-159 (446)
317 cd02186 alpha_tubulin The tubu 58.0 22 0.00047 28.5 4.6 38 54-91 122-164 (434)
318 COG0144 Sun tRNA and rRNA cyto 57.8 33 0.00071 26.7 5.4 58 59-118 151-217 (355)
319 KOG2666 UDP-glucose/GDP-mannos 57.5 13 0.00027 29.1 3.0 30 68-98 3-34 (481)
320 CHL00194 ycf39 Ycf39; Provisio 57.3 30 0.00065 25.9 5.1 57 72-130 5-70 (317)
321 PF07101 DUF1363: Protein of u 56.5 5 0.00011 25.4 0.6 19 69-87 6-24 (124)
322 PF07992 Pyr_redox_2: Pyridine 56.3 11 0.00023 25.9 2.4 30 68-98 1-30 (201)
323 COG5023 Tubulin [Cytoskeleton] 56.0 17 0.00037 28.8 3.5 39 53-91 120-163 (443)
324 PRK08163 salicylate hydroxylas 55.6 16 0.00034 28.2 3.4 31 67-98 5-35 (396)
325 PLN00222 tubulin gamma chain; 55.5 26 0.00056 28.3 4.6 37 55-91 124-165 (454)
326 COG0286 HsdM Type I restrictio 55.4 22 0.00048 28.9 4.3 68 38-107 154-232 (489)
327 PF12242 Eno-Rase_NADH_b: NAD( 55.2 18 0.00039 21.9 2.8 25 63-87 36-61 (78)
328 PRK09496 trkA potassium transp 55.2 38 0.00083 26.7 5.6 59 69-130 3-71 (453)
329 PF09959 DUF2193: Uncharacteri 55.2 12 0.00027 29.7 2.6 81 4-85 71-156 (499)
330 PTZ00335 tubulin alpha chain; 55.1 24 0.00052 28.4 4.4 38 54-91 123-165 (448)
331 PRK13512 coenzyme A disulfide 54.4 19 0.0004 28.6 3.7 31 67-98 2-34 (438)
332 PLN00221 tubulin alpha chain; 54.4 23 0.0005 28.5 4.2 39 53-91 122-165 (450)
333 PRK15076 alpha-galactosidase; 54.3 15 0.00032 29.5 3.1 62 68-130 3-81 (431)
334 PF07801 DUF1647: Protein of u 54.3 44 0.00095 22.6 4.9 51 72-124 66-126 (142)
335 PRK07236 hypothetical protein; 54.2 17 0.00037 28.0 3.4 31 67-98 7-37 (386)
336 KOG3851 Sulfide:quinone oxidor 54.2 26 0.00056 27.5 4.2 33 65-98 38-72 (446)
337 PRK03659 glutathione-regulated 53.8 33 0.00071 28.6 5.1 51 67-121 401-454 (601)
338 PF06690 DUF1188: Protein of u 53.5 80 0.0017 23.5 6.5 67 55-129 32-101 (252)
339 PRK10669 putative cation:proto 53.5 34 0.00075 28.1 5.2 51 67-121 418-471 (558)
340 COG0698 RpiB Ribose 5-phosphat 53.4 18 0.00038 24.8 2.9 39 69-108 61-99 (151)
341 KOG3987 Uncharacterized conser 53.1 7.4 0.00016 28.5 1.1 27 63-89 109-136 (288)
342 PRK12615 galactose-6-phosphate 52.8 18 0.00039 25.3 2.9 39 69-108 60-98 (171)
343 PF13450 NAD_binding_8: NAD(P) 52.7 11 0.00024 21.8 1.6 26 72-98 2-27 (68)
344 PLN02206 UDP-glucuronate decar 52.6 41 0.00089 26.9 5.4 61 67-129 120-188 (442)
345 PF00091 Tubulin: Tubulin/FtsZ 52.6 21 0.00045 25.5 3.4 46 54-100 115-166 (216)
346 PRK09126 hypothetical protein; 52.4 18 0.00039 27.8 3.2 30 68-98 5-34 (392)
347 PRK06912 acoL dihydrolipoamide 52.4 18 0.0004 28.8 3.4 30 68-98 2-31 (458)
348 PF01494 FAD_binding_3: FAD bi 52.1 13 0.00027 27.7 2.3 30 68-98 3-32 (356)
349 PRK09496 trkA potassium transp 51.8 27 0.00059 27.5 4.2 61 67-130 232-303 (453)
350 COG0248 GppA Exopolyphosphatas 51.7 11 0.00024 30.8 2.0 24 54-78 119-142 (492)
351 KOG0024 Sorbitol dehydrogenase 51.3 24 0.00052 27.5 3.6 45 63-108 167-213 (354)
352 COG4567 Response regulator con 50.8 83 0.0018 21.9 6.3 66 31-97 15-88 (182)
353 PRK06753 hypothetical protein; 50.8 21 0.00046 27.2 3.4 30 68-98 2-31 (373)
354 TIGR01119 lacB galactose-6-pho 50.5 20 0.00043 25.1 2.9 38 70-108 61-98 (171)
355 PRK07588 hypothetical protein; 50.0 20 0.00044 27.6 3.2 30 68-98 2-31 (391)
356 COG1041 Predicted DNA modifica 50.0 65 0.0014 25.2 5.8 41 65-108 197-238 (347)
357 PLN02927 antheraxanthin epoxid 49.8 21 0.00045 30.4 3.4 33 65-98 80-112 (668)
358 PRK07045 putative monooxygenas 49.8 21 0.00046 27.5 3.3 31 67-98 6-36 (388)
359 PLN02427 UDP-apiose/xylose syn 49.7 50 0.0011 25.5 5.3 53 67-121 15-77 (386)
360 PRK03562 glutathione-regulated 49.6 36 0.00078 28.6 4.8 61 67-130 401-470 (621)
361 PRK07538 hypothetical protein; 49.5 22 0.00047 27.8 3.3 30 68-98 2-31 (413)
362 PRK08622 galactose-6-phosphate 49.4 20 0.00044 25.1 2.8 38 70-108 61-98 (171)
363 PTZ00215 ribose 5-phosphate is 49.3 21 0.00046 24.4 2.8 38 70-108 65-102 (151)
364 PRK05868 hypothetical protein; 49.0 23 0.0005 27.4 3.4 31 67-98 2-32 (372)
365 COG1233 Phytoene dehydrogenase 48.8 28 0.00062 28.1 4.0 34 67-101 4-37 (487)
366 PRK11524 putative methyltransf 48.8 52 0.0011 24.6 5.1 39 66-107 209-248 (284)
367 PF01189 Nol1_Nop2_Fmu: NOL1/N 48.0 40 0.00087 25.3 4.4 56 64-119 84-146 (283)
368 PF14314 Methyltrans_Mon: Viru 48.0 42 0.00092 28.6 4.8 38 53-93 312-349 (675)
369 TIGR02032 GG-red-SF geranylger 47.7 23 0.00051 25.6 3.1 29 69-98 3-31 (295)
370 PLN02166 dTDP-glucose 4,6-dehy 47.7 62 0.0013 25.8 5.7 61 67-129 121-189 (436)
371 PRK06617 2-octaprenyl-6-methox 47.6 23 0.0005 27.3 3.2 30 68-98 3-32 (374)
372 PHA03108 poly(A) polymerase sm 47.5 16 0.00034 27.7 2.1 65 67-133 62-139 (300)
373 PRK04176 ribulose-1,5-biphosph 47.5 18 0.00039 26.7 2.5 30 68-98 27-56 (257)
374 PRK08849 2-octaprenyl-3-methyl 46.8 23 0.0005 27.3 3.1 30 68-98 5-34 (384)
375 PRK05562 precorrin-2 dehydroge 46.8 72 0.0016 23.3 5.4 61 67-131 26-92 (223)
376 TIGR02360 pbenz_hydroxyl 4-hyd 46.8 25 0.00055 27.3 3.3 31 67-98 3-33 (390)
377 KOG2078 tRNA modification enzy 46.8 7 0.00015 31.4 0.2 42 63-107 247-289 (495)
378 PRK15181 Vi polysaccharide bio 46.5 59 0.0013 24.7 5.2 56 63-121 13-81 (348)
379 PF01073 3Beta_HSD: 3-beta hyd 45.7 40 0.00087 25.1 4.1 47 74-121 4-57 (280)
380 TIGR02053 MerA mercuric reduct 44.9 27 0.00058 27.8 3.2 29 69-98 3-31 (463)
381 PF03610 EIIA-man: PTS system 44.9 21 0.00045 22.7 2.2 50 56-105 50-100 (116)
382 PRK08507 prephenate dehydrogen 44.8 32 0.0007 25.4 3.5 60 69-131 3-65 (275)
383 TIGR01988 Ubi-OHases Ubiquinon 44.7 27 0.00058 26.6 3.1 29 69-98 2-30 (385)
384 PRK07608 ubiquinone biosynthes 44.6 32 0.00069 26.4 3.5 31 67-98 6-36 (388)
385 PTZ00318 NADH dehydrogenase-li 44.4 28 0.0006 27.5 3.2 32 66-98 10-41 (424)
386 cd06060 misato Human Misato sh 44.3 29 0.00064 28.4 3.4 39 53-91 141-183 (493)
387 PRK08020 ubiF 2-octaprenyl-3-m 44.3 31 0.00066 26.6 3.4 31 67-98 6-36 (391)
388 PRK06370 mercuric reductase; V 44.2 28 0.00061 27.7 3.3 30 68-98 7-36 (463)
389 TIGR00824 EIIA-man PTS system, 44.1 57 0.0012 20.9 4.2 42 65-106 60-102 (116)
390 TIGR01984 UbiH 2-polyprenyl-6- 43.9 28 0.00061 26.6 3.1 29 69-98 2-31 (382)
391 TIGR03219 salicylate_mono sali 43.7 31 0.00068 26.9 3.4 30 68-98 2-32 (414)
392 TIGR01181 dTDP_gluc_dehyt dTDP 43.6 49 0.0011 24.2 4.3 48 73-121 5-62 (317)
393 COG3315 O-Methyltransferase in 43.6 9 0.0002 29.1 0.4 53 66-121 93-155 (297)
394 PRK08850 2-octaprenyl-6-methox 43.5 25 0.00054 27.4 2.8 30 68-98 6-35 (405)
395 PTZ00010 tubulin beta chain; P 43.5 46 0.001 26.8 4.3 37 55-91 122-163 (445)
396 PTZ00383 malate:quinone oxidor 43.3 27 0.00059 28.5 3.1 33 67-100 46-80 (497)
397 PRK05714 2-octaprenyl-3-methyl 43.2 27 0.00058 27.1 2.9 30 68-98 4-33 (405)
398 PRK09564 coenzyme A disulfide 42.9 38 0.00083 26.6 3.8 30 68-98 2-33 (444)
399 KOG3201 Uncharacterized conser 42.8 2.6 5.6E-05 29.6 -2.4 68 67-135 31-114 (201)
400 PRK07251 pyridine nucleotide-d 42.6 30 0.00066 27.3 3.2 30 68-98 5-34 (438)
401 COG0287 TyrA Prephenate dehydr 42.4 33 0.00072 25.8 3.2 63 68-131 5-71 (279)
402 COG4883 Uncharacterized protei 42.3 35 0.00075 26.5 3.3 82 4-86 72-161 (500)
403 PF04820 Trp_halogenase: Trypt 42.3 26 0.00057 28.1 2.8 31 68-99 1-34 (454)
404 TIGR01118 lacA galactose-6-pho 42.1 23 0.0005 24.0 2.1 44 72-116 61-106 (141)
405 TIGR01424 gluta_reduc_2 glutat 41.9 36 0.00078 27.0 3.5 29 69-98 5-33 (446)
406 PF06016 Reovirus_L2: Reovirus 41.7 40 0.00087 30.8 4.0 70 56-130 814-889 (1289)
407 PRK09424 pntA NAD(P) transhydr 41.5 33 0.00071 28.2 3.3 41 66-108 165-207 (509)
408 PRK07364 2-octaprenyl-6-methox 41.5 38 0.00082 26.2 3.6 31 67-98 19-49 (415)
409 PRK08013 oxidoreductase; Provi 41.2 31 0.00068 26.8 3.0 30 68-98 5-34 (400)
410 PRK06116 glutathione reductase 41.1 32 0.00068 27.3 3.1 31 68-99 6-36 (450)
411 PF12831 FAD_oxidored: FAD dep 40.9 24 0.00051 28.0 2.4 29 69-98 2-30 (428)
412 PRK08125 bifunctional UDP-gluc 40.6 59 0.0013 27.4 4.7 53 66-120 315-371 (660)
413 PRK08243 4-hydroxybenzoate 3-m 40.4 38 0.00082 26.2 3.4 31 67-98 3-33 (392)
414 PRK06153 hypothetical protein; 40.4 42 0.0009 26.7 3.6 31 67-98 177-208 (393)
415 PRK13606 LPPG:FO 2-phospho-L-l 40.2 49 0.0011 25.4 3.8 22 68-89 2-25 (303)
416 TIGR01421 gluta_reduc_1 glutat 40.1 33 0.00072 27.3 3.1 30 68-98 4-33 (450)
417 COG4820 EutJ Ethanolamine util 40.1 16 0.00034 26.7 1.1 12 67-78 142-153 (277)
418 PRK12613 galactose-6-phosphate 39.9 26 0.00057 23.7 2.1 43 73-116 61-105 (141)
419 TIGR03140 AhpF alkyl hydropero 39.8 39 0.00083 27.5 3.5 30 67-97 213-242 (515)
420 PRK07818 dihydrolipoamide dehy 39.8 36 0.00078 27.2 3.2 30 68-98 6-35 (466)
421 PRK06185 hypothetical protein; 39.6 37 0.0008 26.3 3.2 31 67-98 7-37 (407)
422 TIGR03143 AhpF_homolog putativ 39.5 35 0.00076 28.1 3.2 30 68-98 6-35 (555)
423 PRK07535 methyltetrahydrofolat 39.3 27 0.00058 26.0 2.3 68 34-107 9-87 (261)
424 PRK05976 dihydrolipoamide dehy 39.3 36 0.00079 27.2 3.2 30 68-98 6-35 (472)
425 PF03807 F420_oxidored: NADP o 39.1 4.5 9.7E-05 24.6 -1.6 57 75-131 6-68 (96)
426 PRK06115 dihydrolipoamide dehy 39.1 37 0.00081 27.2 3.2 30 68-98 5-34 (466)
427 TIGR02734 crtI_fam phytoene de 39.0 31 0.00067 27.7 2.8 29 69-98 1-29 (502)
428 COG3967 DltE Short-chain dehyd 39.0 42 0.00091 24.6 3.1 39 67-106 6-46 (245)
429 PF14881 Tubulin_3: Tubulin do 38.6 40 0.00086 23.6 3.0 40 53-93 64-107 (180)
430 PRK07494 2-octaprenyl-6-methox 38.6 39 0.00084 26.0 3.2 30 68-98 9-38 (388)
431 TIGR01826 CofD_related conserv 38.3 33 0.00072 26.3 2.7 30 69-98 1-33 (310)
432 KOG1494 NAD-dependent malate d 38.2 20 0.00043 27.5 1.4 39 67-105 31-69 (345)
433 PRK06126 hypothetical protein; 38.2 39 0.00085 27.5 3.3 31 67-98 8-38 (545)
434 PRK11031 guanosine pentaphosph 38.0 24 0.00051 28.8 2.0 12 66-77 133-144 (496)
435 PTZ00153 lipoamide dehydrogena 37.8 40 0.00088 28.6 3.3 30 68-98 118-147 (659)
436 PLN02661 Putative thiazole syn 37.8 51 0.0011 25.9 3.7 31 67-98 93-124 (357)
437 TIGR02733 desat_CrtD C-3',4' d 37.7 40 0.00087 27.0 3.2 32 67-99 2-33 (492)
438 PRK08010 pyridine nucleotide-d 37.7 43 0.00093 26.5 3.4 30 68-98 5-34 (441)
439 TIGR00675 dcm DNA-methyltransf 37.4 49 0.0011 25.2 3.5 59 69-130 1-65 (315)
440 PF00175 NAD_binding_1: Oxidor 37.0 33 0.00072 21.0 2.2 24 72-96 2-30 (109)
441 PF02541 Ppx-GppA: Ppx/GppA ph 36.9 20 0.00044 26.6 1.4 12 65-76 112-123 (285)
442 PRK13699 putative methylase; P 36.8 1.1E+02 0.0023 22.2 5.1 40 65-107 163-203 (227)
443 PRK08621 galactose-6-phosphate 36.8 28 0.0006 23.6 1.8 34 74-108 63-96 (142)
444 PF00549 Ligase_CoA: CoA-ligas 36.8 74 0.0016 21.8 4.0 33 65-98 35-81 (153)
445 PRK08773 2-octaprenyl-3-methyl 36.5 45 0.00098 25.7 3.3 31 67-98 7-37 (392)
446 COG1748 LYS9 Saccharopine dehy 36.3 1E+02 0.0022 24.6 5.1 54 67-121 2-59 (389)
447 TIGR01989 COQ6 Ubiquinone bios 35.8 43 0.00093 26.5 3.1 29 69-98 3-35 (437)
448 KOG2614 Kynurenine 3-monooxyge 35.4 49 0.0011 26.6 3.2 31 67-98 3-33 (420)
449 PRK06184 hypothetical protein; 35.4 46 0.001 26.8 3.3 31 67-98 4-34 (502)
450 COG0654 UbiH 2-polyprenyl-6-me 35.3 45 0.00098 25.9 3.1 31 67-98 3-33 (387)
451 PRK10854 exopolyphosphatase; P 35.2 27 0.00059 28.6 1.9 11 66-76 138-148 (513)
452 TIGR01292 TRX_reduct thioredox 35.2 50 0.0011 24.0 3.2 30 68-98 2-31 (300)
453 PRK06467 dihydrolipoamide dehy 35.1 48 0.001 26.6 3.3 30 68-98 6-35 (471)
454 cd07044 CofD_YvcK Family of Co 34.8 38 0.00083 26.0 2.5 29 69-97 1-32 (309)
455 COG0031 CysK Cysteine synthase 34.7 43 0.00094 25.6 2.8 43 53-99 159-205 (300)
456 TIGR01423 trypano_reduc trypan 34.6 43 0.00093 27.2 3.0 30 68-98 5-35 (486)
457 PLN02463 lycopene beta cyclase 34.5 43 0.00094 26.9 2.9 31 67-98 29-59 (447)
458 PRK06545 prephenate dehydrogen 34.5 65 0.0014 24.9 3.8 30 68-98 2-33 (359)
459 KOG1800 Ferredoxin/adrenodoxin 34.4 66 0.0014 25.9 3.8 33 65-98 19-53 (468)
460 PRK06292 dihydrolipoamide dehy 34.4 47 0.001 26.3 3.1 30 68-98 5-34 (460)
461 TIGR02261 benz_CoA_red_D benzo 34.1 54 0.0012 24.6 3.2 24 63-86 95-143 (262)
462 cd07187 YvcK_like family of mo 34.1 41 0.00089 25.8 2.6 29 69-97 1-32 (308)
463 cd00740 MeTr MeTr subgroup of 33.9 36 0.00078 25.2 2.2 65 39-107 14-88 (252)
464 TIGR02028 ChlP geranylgeranyl 33.6 54 0.0012 25.7 3.3 30 68-98 2-31 (398)
465 PRK05732 2-octaprenyl-6-methox 33.4 48 0.001 25.4 2.9 30 68-98 5-37 (395)
466 PRK08244 hypothetical protein; 33.3 48 0.001 26.6 3.0 30 68-98 4-33 (493)
467 COG0391 Uncharacterized conser 33.3 57 0.0012 25.3 3.2 27 65-91 6-35 (323)
468 PRK06101 short chain dehydroge 33.3 72 0.0016 22.6 3.7 51 68-120 3-57 (240)
469 PRK14694 putative mercuric red 33.3 56 0.0012 26.1 3.4 30 68-98 8-37 (468)
470 PRK06416 dihydrolipoamide dehy 33.2 62 0.0014 25.7 3.7 30 68-98 6-35 (462)
471 PRK06327 dihydrolipoamide dehy 33.1 53 0.0011 26.3 3.2 30 68-98 6-35 (475)
472 TIGR02133 RPI_actino ribose 5- 32.8 21 0.00046 24.3 0.8 38 70-108 62-99 (148)
473 PRK11445 putative oxidoreducta 32.7 56 0.0012 24.9 3.2 30 68-99 3-32 (351)
474 PRK06718 precorrin-2 dehydroge 32.7 1.8E+02 0.0039 20.6 5.8 61 67-131 11-77 (202)
475 KOG3456 NADH:ubiquinone oxidor 32.6 54 0.0012 21.2 2.5 56 37-100 48-103 (120)
476 PRK08267 short chain dehydroge 32.0 59 0.0013 23.2 3.1 52 67-120 2-59 (260)
477 PF02086 MethyltransfD12: D12 31.7 74 0.0016 22.9 3.6 48 52-103 8-56 (260)
478 KOG1335 Dihydrolipoamide dehyd 31.6 67 0.0015 25.9 3.4 31 67-98 40-70 (506)
479 PRK05249 soluble pyridine nucl 31.5 55 0.0012 25.9 3.1 30 68-98 7-36 (461)
480 PTZ00058 glutathione reductase 31.4 52 0.0011 27.3 3.0 30 68-98 50-79 (561)
481 TIGR01350 lipoamide_DH dihydro 31.0 60 0.0013 25.7 3.2 29 69-98 4-32 (461)
482 PLN02507 glutathione reductase 30.9 61 0.0013 26.3 3.3 30 68-98 27-56 (499)
483 TIGR03169 Nterm_to_SelD pyridi 30.9 52 0.0011 25.1 2.8 30 68-98 1-33 (364)
484 TIGR00292 thiazole biosynthesi 30.9 49 0.0011 24.4 2.5 31 68-99 23-53 (254)
485 TIGR03192 benz_CoA_bzdQ benzoy 30.7 60 0.0013 24.7 3.0 12 75-86 160-171 (293)
486 PRK04965 NADH:flavorubredoxin 30.7 68 0.0015 24.7 3.4 31 67-98 3-35 (377)
487 PRK08294 phenol 2-monooxygenas 30.7 64 0.0014 27.1 3.4 31 67-98 33-64 (634)
488 PRK13748 putative mercuric red 30.6 59 0.0013 26.5 3.2 30 68-98 100-129 (561)
489 PF06792 UPF0261: Uncharacteri 30.6 68 0.0015 25.6 3.4 44 44-88 73-117 (403)
490 PRK10538 malonic semialdehyde 30.5 66 0.0014 22.9 3.2 48 72-120 5-57 (248)
491 cd00423 Pterin_binding Pterin 30.3 62 0.0013 23.8 3.0 13 65-77 36-48 (258)
492 PF06345 Drf_DAD: DRF Autoregu 30.3 31 0.00067 13.8 0.7 12 4-15 3-14 (15)
493 PLN02172 flavin-containing mon 30.2 66 0.0014 25.9 3.3 32 66-98 10-41 (461)
494 PF11899 DUF3419: Protein of u 30.2 75 0.0016 25.1 3.6 41 57-101 28-69 (380)
495 PRK10262 thioredoxin reductase 30.0 69 0.0015 24.0 3.3 31 66-97 6-36 (321)
496 PRK14727 putative mercuric red 29.9 64 0.0014 25.9 3.2 31 67-98 17-47 (479)
497 PTZ00052 thioredoxin reductase 29.9 63 0.0014 26.2 3.2 30 68-98 7-36 (499)
498 TIGR03706 exo_poly_only exopol 29.9 45 0.00097 25.1 2.2 12 67-78 127-138 (300)
499 TIGR02730 carot_isom carotene 29.7 63 0.0014 26.0 3.1 30 69-99 3-32 (493)
500 PRK10637 cysG siroheme synthas 29.6 1.5E+02 0.0033 23.8 5.3 60 67-130 13-78 (457)
No 1
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.98 E-value=9.7e-33 Score=201.28 Aligned_cols=130 Identities=32% Similarity=0.557 Sum_probs=119.3
Q ss_pred CchhhHHHHhhCCCCChhhhhhCCCcccccccCchHHHHHHHHHhccccccH-HHHhccCCCCCCcceEEeecCCCCHHH
Q 032721 2 SAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKKPEMNGLMRKAMSGVSVPFM-TSVLDGYDGFKGVKRLVDVGGSAGDCL 80 (135)
Q Consensus 2 ~~w~~L~~~vr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vvDvGgG~G~~~ 80 (135)
++|.+|++++++|+ ++|+.++|.++|+|+.++|+..+.|+++|...+.... ..+++.++ |++..+|||||||+|.++
T Consensus 38 ~~~~~L~~~v~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~ 115 (241)
T PF00891_consen 38 PAWFRLTEAVRTGK-PPFEKAFGTPFFEYLEEDPELAKRFNAAMAEYSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFA 115 (241)
T ss_dssp HGGGGHHHHHHHSS--HHHHHHSS-HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHH
T ss_pred HHHHHHHhhhccCC-CHHHHhcCCcHHHhhhhChHHHHHHHHHHHhhhhcchhhhhhcccc-ccCccEEEeccCcchHHH
Confidence 57999999999999 9999999999999999999999999999999988877 78889998 999999999999999999
Q ss_pred HHHHHHCCCCCeeEEeechHHHHhCCCCCCcEEEecCCCCCCCCCcEEEecccC
Q 032721 81 RMILQKHPFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKVHH 134 (135)
Q Consensus 81 ~~l~~~~p~l~~~~~~D~p~~~~~a~~~~rv~~~~gd~~~~~p~~D~~~l~~vl 134 (135)
.+++++||+++ ++++|+|.+++.+++.+||++++||||+++|.+|+|+|+|||
T Consensus 116 ~~l~~~~P~l~-~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D~~~l~~vL 168 (241)
T PF00891_consen 116 IALARAYPNLR-ATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVADVYLLRHVL 168 (241)
T ss_dssp HHHHHHSTTSE-EEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSESEEEEESSG
T ss_pred HHHHHHCCCCc-ceeeccHhhhhccccccccccccccHHhhhccccceeeehhh
Confidence 99999999999 999999999999888899999999999889999999999998
No 2
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.91 E-value=2.3e-24 Score=161.90 Aligned_cols=132 Identities=42% Similarity=0.719 Sum_probs=125.5
Q ss_pred CCchhhHHHHhhCCCCChhhhhhCCCcccccccCchHHHHHHHHHhccccccHHHHhccCCCCCCcceEEeecCCCCHHH
Q 032721 1 MSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKKPEMNGLMRKAMSGVSVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCL 80 (135)
Q Consensus 1 ~~~w~~L~~~vr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~ 80 (135)
++.|.+|.+++++|+ .+|..++|+.+++|...++.....|+++|...+......+++.+.+|+.....||||||.|.++
T Consensus 114 ~~~w~~l~dai~eg~-~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~ 192 (342)
T KOG3178|consen 114 MNTWQFLKDAILEGG-DAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVL 192 (342)
T ss_pred hhhHHHHHHHHHhcc-cCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHH
Confidence 468999999999999 8999999999999999999999999999999999888888888877888999999999999999
Q ss_pred HHHHHHCCCCCeeEEeechHHHHhCCCC-CCcEEEecCCCCCCCCCcEEEecccC
Q 032721 81 RMILQKHPFICEGINFDLPEVVAEAPSI-PGVTHIGGDMFKSIPAADAIFMKVHH 134 (135)
Q Consensus 81 ~~l~~~~p~l~~~~~~D~p~~~~~a~~~-~rv~~~~gd~~~~~p~~D~~~l~~vl 134 (135)
..++..||+++ ++.+|+|.+++.++.. +.|+.+.||+|+++|.+|+|+|+|||
T Consensus 193 k~ll~~fp~ik-~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkWiL 246 (342)
T KOG3178|consen 193 KNLLSKYPHIK-GINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKWIL 246 (342)
T ss_pred HHHHHhCCCCc-eeecCHHHHHhhhhhhcCCcceecccccccCCCcCeEEEEeec
Confidence 99999999999 9999999999999988 89999999999999999999999997
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.77 E-value=1.8e-18 Score=130.25 Aligned_cols=122 Identities=22% Similarity=0.298 Sum_probs=91.9
Q ss_pred chhhHHHHhhCCCCChhhhhhCCCcccccccCchHHHHHHHHHhccc-cccHHHHhccCCCCCCcceEEeecCCCCHHHH
Q 032721 3 AWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKKPEMNGLMRKAMSGVS-VPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLR 81 (135)
Q Consensus 3 ~w~~L~~~vr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~-~~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~ 81 (135)
.|.+|++++|+ + ++|...+ ++....++. ..|...|.... ....+.+++..+ +++..+|+|||||+|.++.
T Consensus 95 ~~~~l~~~~r~-~-~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~vlDiG~G~G~~~~ 165 (306)
T TIGR02716 95 FYMGLSQAVRG-Q-KNFKGQV-----PYPPVTRED-NLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISA 165 (306)
T ss_pred HHHhHHHHhcC-C-ccccccc-----CCCCCCHHH-HHhHHHHHHhcchhHHHHHHHHcC-CCCCCEEEEeCCchhHHHH
Confidence 48999999984 4 3454322 222222333 34555554333 344566778887 8888999999999999999
Q ss_pred HHHHHCCCCCeeEEeechHHHHhCCCC-------CCcEEEecCCCCC-CCCCcEEEecccC
Q 032721 82 MILQKHPFICEGINFDLPEVVAEAPSI-------PGVTHIGGDMFKS-IPAADAIFMKVHH 134 (135)
Q Consensus 82 ~l~~~~p~l~~~~~~D~p~~~~~a~~~-------~rv~~~~gd~~~~-~p~~D~~~l~~vl 134 (135)
.+++++|+++ ++++|+|.+++.++++ +|++++.+|+++. +|.+|+|+++++|
T Consensus 166 ~~~~~~p~~~-~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~l 225 (306)
T TIGR02716 166 AMLKHFPELD-STILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRIL 225 (306)
T ss_pred HHHHHCCCCE-EEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhhh
Confidence 9999999999 9999999999887642 6899999999975 7778999999876
No 4
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.24 E-value=1.4e-11 Score=87.94 Aligned_cols=92 Identities=20% Similarity=0.290 Sum_probs=75.9
Q ss_pred HHHHHHhccccccHHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-CCcEEEecC
Q 032721 40 LMRKAMSGVSVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-PGVTHIGGD 117 (135)
Q Consensus 40 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-~rv~~~~gd 117 (135)
.|.+.-...+++. ..++..++ .....+|+|+|||+|.....|++++|... ++++|. |+|++.|+.. ++++|..+|
T Consensus 7 ~Yl~F~~eRtRPa-~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~-i~GiDsS~~Mla~Aa~rlp~~~f~~aD 83 (257)
T COG4106 7 QYLQFEDERTRPA-RDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAV-ITGIDSSPAMLAKAAQRLPDATFEEAD 83 (257)
T ss_pred HHHHHHHhccCcH-HHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCe-EeeccCCHHHHHHHHHhCCCCceeccc
Confidence 3445555566653 56788887 88889999999999999999999999999 999999 9999998765 899999999
Q ss_pred CCCCCCC--CcEEEecccC
Q 032721 118 MFKSIPA--ADAIFMKVHH 134 (135)
Q Consensus 118 ~~~~~p~--~D~~~l~~vl 134 (135)
.-+..|. .|+++...+|
T Consensus 84 l~~w~p~~~~dllfaNAvl 102 (257)
T COG4106 84 LRTWKPEQPTDLLFANAVL 102 (257)
T ss_pred HhhcCCCCccchhhhhhhh
Confidence 9776674 4888776554
No 5
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.24 E-value=1.5e-11 Score=79.17 Aligned_cols=65 Identities=22% Similarity=0.323 Sum_probs=55.9
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-------CCcEEEecCC-CCC-CC-CCcEEEecc
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDM-FKS-IP-AADAIFMKV 132 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~-~~~-~p-~~D~~~l~~ 132 (135)
.+|+|||||+|.++..+++++|..+ ++++|+ |.+++.++++ ++++++.+|+ +.. .+ ..|++++..
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGAR-VVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG 78 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSE-EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC
Confidence 6899999999999999999999999 999999 9999887642 7999999999 333 33 459999877
No 6
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.14 E-value=2.4e-10 Score=84.08 Aligned_cols=78 Identities=26% Similarity=0.348 Sum_probs=64.5
Q ss_pred HHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCCCCcEEEecCCCCCCCC--CcEEEe
Q 032721 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPA--ADAIFM 130 (135)
Q Consensus 54 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~~rv~~~~gd~~~~~p~--~D~~~l 130 (135)
..+++.++ .....+|+|||||+|.++..+++++|+.+ ++++|+ |.+++.|++ .+++++.+|+.+..+. .|++++
T Consensus 19 ~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~-v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~~ 95 (255)
T PRK14103 19 YDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAV-IEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVVS 95 (255)
T ss_pred HHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEEE
Confidence 45777776 66668999999999999999999999988 999999 999998866 4689999998543332 499999
Q ss_pred cccC
Q 032721 131 KVHH 134 (135)
Q Consensus 131 ~~vl 134 (135)
..+|
T Consensus 96 ~~~l 99 (255)
T PRK14103 96 NAAL 99 (255)
T ss_pred ehhh
Confidence 8765
No 7
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.12 E-value=1.9e-10 Score=82.27 Aligned_cols=69 Identities=19% Similarity=0.330 Sum_probs=59.9
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-CCcEEEecCCCCCCCC--CcEEEecccC
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKSIPA--ADAIFMKVHH 134 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-~rv~~~~gd~~~~~p~--~D~~~l~~vl 134 (135)
+..+|+|||||+|.++..+++..|..+ ++++|+ |.+++.|++. +++++..+|++++.+. .|++++..+|
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~-v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL 115 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKH-IYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVL 115 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCe-EEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChh
Confidence 457899999999999999999889888 999999 9999999874 7788999999886554 3999988875
No 8
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.10 E-value=2.5e-10 Score=80.30 Aligned_cols=90 Identities=19% Similarity=0.273 Sum_probs=66.6
Q ss_pred HHHH-HhccccccHHH-HhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCc
Q 032721 41 MRKA-MSGVSVPFMTS-VLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGV 111 (135)
Q Consensus 41 f~~~-m~~~~~~~~~~-~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv 111 (135)
|.++ |...+...... +++.++ ..+..+|+|||||+|.++..+++++|+.+ ++++|+ |.+++.++++ .++
T Consensus 6 f~~~~~~~~~~~~~r~~~~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~n~~~~~~~~i 83 (187)
T PRK08287 6 FLRGEKVPMTKEEVRALALSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQ-VTAIERNPDALRLIKENRQRFGCGNI 83 (187)
T ss_pred hccCCCCCCchHHHHHHHHHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHhCCCCe
Confidence 4443 44444443333 334555 56668999999999999999999999999 999999 8888887643 578
Q ss_pred EEEecCCCCCCCC-CcEEEecc
Q 032721 112 THIGGDMFKSIPA-ADAIFMKV 132 (135)
Q Consensus 112 ~~~~gd~~~~~p~-~D~~~l~~ 132 (135)
+++.+|....++. .|++++..
T Consensus 84 ~~~~~d~~~~~~~~~D~v~~~~ 105 (187)
T PRK08287 84 DIIPGEAPIELPGKADAIFIGG 105 (187)
T ss_pred EEEecCchhhcCcCCCEEEECC
Confidence 9999998654554 59998764
No 9
>PRK06922 hypothetical protein; Provisional
Probab=99.09 E-value=2.6e-10 Score=92.92 Aligned_cols=108 Identities=16% Similarity=0.139 Sum_probs=80.4
Q ss_pred CCcccccccCchHHHHHHHHHhccccc--cHHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHH
Q 032721 25 EPAYSYYGKKPEMNGLMRKAMSGVSVP--FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEV 101 (135)
Q Consensus 25 ~~~~e~~~~~~~~~~~f~~~m~~~~~~--~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~ 101 (135)
..+|+++..+++...+|...|.-.... ........++ +.+..+|+|||||+|.++..+++.+|+.+ ++++|+ +.+
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~k-VtGIDIS~~M 454 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKR-IYGIDISENV 454 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCE-EEEEECCHHH
Confidence 567899888898888888777654332 1222233445 55668999999999999999999999999 999999 788
Q ss_pred HHhCCCC-----CCcEEEecCCCCC---CCC--CcEEEecccC
Q 032721 102 VAEAPSI-----PGVTHIGGDMFKS---IPA--ADAIFMKVHH 134 (135)
Q Consensus 102 ~~~a~~~-----~rv~~~~gd~~~~---~p~--~D~~~l~~vl 134 (135)
++.|++. .+++++.+|..+- ++. .|+|+++.++
T Consensus 455 Le~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 455 IDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred HHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 8887643 4678888998542 332 4999987543
No 10
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.08 E-value=9.8e-10 Score=80.75 Aligned_cols=80 Identities=24% Similarity=0.385 Sum_probs=66.6
Q ss_pred HHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-CCcEEEecCCCCCCC--CCcEE
Q 032721 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKSIP--AADAI 128 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-~rv~~~~gd~~~~~p--~~D~~ 128 (135)
...+++.++ ..+..+|+|||||+|.++..+++.+|..+ ++++|+ +.+++.+++. ++++++.+|+.+..| ..|++
T Consensus 20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~-v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 97 (258)
T PRK01683 20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAAR-ITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLI 97 (258)
T ss_pred HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEE
Confidence 456777776 66778999999999999999999999988 999999 8999988765 689999999865433 24999
Q ss_pred EecccC
Q 032721 129 FMKVHH 134 (135)
Q Consensus 129 ~l~~vl 134 (135)
+....|
T Consensus 98 ~~~~~l 103 (258)
T PRK01683 98 FANASL 103 (258)
T ss_pred EEccCh
Confidence 988765
No 11
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.06 E-value=2.8e-10 Score=77.46 Aligned_cols=68 Identities=24% Similarity=0.317 Sum_probs=56.6
Q ss_pred CcceEEeecCCCCHHHHHHH-HHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCCCC-----CCcEEEec
Q 032721 65 GVKRLVDVGGSAGDCLRMIL-QKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP-----AADAIFMK 131 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~-~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~~p-----~~D~~~l~ 131 (135)
+..+|+|+|||+|.++..++ +.+|..+ ++++|+ +.+++.|++. +++++..+|+++ ++ ..|+++..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~-i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAK-IIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSE-EEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCE-EEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEc
Confidence 34799999999999999999 5688888 999999 9999998752 689999999987 55 35999987
Q ss_pred ccC
Q 032721 132 VHH 134 (135)
Q Consensus 132 ~vl 134 (135)
.++
T Consensus 81 ~~l 83 (152)
T PF13847_consen 81 GVL 83 (152)
T ss_dssp STG
T ss_pred Cch
Confidence 654
No 12
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.96 E-value=7.5e-10 Score=76.93 Aligned_cols=74 Identities=22% Similarity=0.326 Sum_probs=59.8
Q ss_pred HhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCCCC-C-Cc
Q 032721 56 VLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP-A-AD 126 (135)
Q Consensus 56 ~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~~p-~-~D 126 (135)
+++.++ .....+++|+|||+|.++..+++++|+.+ ++.+|. +.+++.++++ +.++++.+|+++.++ . .|
T Consensus 23 L~~~l~-~~~~~~vLDlG~G~G~i~~~la~~~~~~~-v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD 100 (170)
T PF05175_consen 23 LLDNLP-KHKGGRVLDLGCGSGVISLALAKRGPDAK-VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFD 100 (170)
T ss_dssp HHHHHH-HHTTCEEEEETSTTSHHHHHHHHTSTCEE-EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEE
T ss_pred HHHHHh-hccCCeEEEecCChHHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHHhcCcccccccccccccccccccee
Confidence 334443 32457899999999999999999999999 999999 8899888753 349999999999877 3 49
Q ss_pred EEEec
Q 032721 127 AIFMK 131 (135)
Q Consensus 127 ~~~l~ 131 (135)
++++.
T Consensus 101 ~Iv~N 105 (170)
T PF05175_consen 101 LIVSN 105 (170)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 99864
No 13
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.94 E-value=2.5e-09 Score=82.91 Aligned_cols=76 Identities=16% Similarity=0.139 Sum_probs=61.5
Q ss_pred HHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC---------CCcEEEecCCCCCCC
Q 032721 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI---------PGVTHIGGDMFKSIP 123 (135)
Q Consensus 54 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~---------~rv~~~~gd~~~~~p 123 (135)
.-+++.++ .....+|+|+|||+|.++..+++++|+.+ ++++|. +.+++.++++ .+++++.+|.++.++
T Consensus 218 rllL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~-V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~ 295 (378)
T PRK15001 218 RFFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAK-VVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE 295 (378)
T ss_pred HHHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence 34556665 33346999999999999999999999999 999999 7888887643 368999999988764
Q ss_pred C--CcEEEec
Q 032721 124 A--ADAIFMK 131 (135)
Q Consensus 124 ~--~D~~~l~ 131 (135)
. .|+|++.
T Consensus 296 ~~~fDlIlsN 305 (378)
T PRK15001 296 PFRFNAVLCN 305 (378)
T ss_pred CCCEEEEEEC
Confidence 3 4999874
No 14
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.94 E-value=3.3e-09 Score=76.62 Aligned_cols=79 Identities=11% Similarity=0.121 Sum_probs=61.5
Q ss_pred HHHhccCCCCCCcceEEeecCCCCHHHHHHHHHC-CCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCC-CCC
Q 032721 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKH-PFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IPA 124 (135)
Q Consensus 54 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~-p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~-~p~ 124 (135)
..++..++ ..+..+|+|+|||+|.++..+++.. |..+ ++++|+ |.+++.++++ ++++++.+|..+. +|.
T Consensus 35 ~~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (231)
T TIGR02752 35 KDTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGH-VIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDD 112 (231)
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCC
Confidence 44556665 6666899999999999999999886 6678 999999 8888877542 5799999998664 443
Q ss_pred --CcEEEecccC
Q 032721 125 --ADAIFMKVHH 134 (135)
Q Consensus 125 --~D~~~l~~vl 134 (135)
.|++++...+
T Consensus 113 ~~fD~V~~~~~l 124 (231)
T TIGR02752 113 NSFDYVTIGFGL 124 (231)
T ss_pred CCccEEEEeccc
Confidence 3999886543
No 15
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.93 E-value=1.5e-09 Score=79.68 Aligned_cols=68 Identities=21% Similarity=0.241 Sum_probs=55.6
Q ss_pred CcceEEeecCCCCHHHHHHHH--HCCCCCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCC-CCCCcEEEeccc
Q 032721 65 GVKRLVDVGGSAGDCLRMILQ--KHPFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IPAADAIFMKVH 133 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~--~~p~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~-~p~~D~~~l~~v 133 (135)
+..+|+|||||+|..+..+++ .+|+.+ ++++|+ |.+++.|+++ .+++++.+|+.+. .+..|++++..+
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~-v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCK-IIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCe-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 457899999999999999988 468889 999999 9999998653 4799999998653 345698887644
No 16
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.92 E-value=2.5e-09 Score=77.88 Aligned_cols=69 Identities=17% Similarity=0.166 Sum_probs=56.0
Q ss_pred CcceEEeecCCCCHHHHHHHHH--CCCCCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCC-CCCCcEEEeccc
Q 032721 65 GVKRLVDVGGSAGDCLRMILQK--HPFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IPAADAIFMKVH 133 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~--~p~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~-~p~~D~~~l~~v 133 (135)
+..+|+|||||+|.++..++++ +|+.+ ++++|+ +.+++.|+++ .+++++.+|+.+. .+..|++++..+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~-v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVK-IIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCe-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 4468999999999999999997 47888 999999 9999888642 4789999999764 455688877654
Q ss_pred C
Q 032721 134 H 134 (135)
Q Consensus 134 l 134 (135)
|
T Consensus 132 l 132 (239)
T TIGR00740 132 L 132 (239)
T ss_pred h
Confidence 3
No 17
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=1.8e-09 Score=80.78 Aligned_cols=63 Identities=24% Similarity=0.359 Sum_probs=55.1
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCCCCC-CcEEEec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA-ADAIFMK 131 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~~p~-~D~~~l~ 131 (135)
+|+|+|||+|.+++.++.+.|+.+ +++.|+ |.+++.|+.+ .++.++.+|+|++++. .|+++..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~-V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsN 183 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAE-VIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSN 183 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCe-EEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeC
Confidence 799999999999999999999999 999999 9999998764 4567777799999765 5998763
No 18
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.90 E-value=4.7e-09 Score=76.60 Aligned_cols=70 Identities=17% Similarity=0.185 Sum_probs=58.5
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCC-CCC--CcEEEecccC
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IPA--ADAIFMKVHH 134 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~-~p~--~D~~~l~~vl 134 (135)
+..+|||||||||.++..+++..+..+ ++++|. +.|++.+++. ..++|+.+|..+= +|. -|+|.++.-|
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~-v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGE-VVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCce-EEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence 458999999999999999999999888 999999 9999999763 2399999999442 444 3999988766
Q ss_pred C
Q 032721 135 F 135 (135)
Q Consensus 135 ~ 135 (135)
|
T Consensus 130 r 130 (238)
T COG2226 130 R 130 (238)
T ss_pred h
Confidence 4
No 19
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.89 E-value=4.3e-09 Score=75.68 Aligned_cols=105 Identities=13% Similarity=0.034 Sum_probs=70.6
Q ss_pred cccccccCchHHHHHHHHHhccccccHHHHhccCCC-CCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHh
Q 032721 27 AYSYYGKKPEMNGLMRKAMSGVSVPFMTSVLDGYDG-FKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAE 104 (135)
Q Consensus 27 ~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~-~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~ 104 (135)
.|+.+...++....+...|..........+++.++. ..+..+|+|||||+|.++..+++. ..+ ++++|+ |.+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~-v~gvD~s~~~i~~ 92 (219)
T TIGR02021 16 RWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAI-VKAVDISEQMVQM 92 (219)
T ss_pred HHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCE-EEEEECCHHHHHH
Confidence 345455555555666665644333333444444431 234579999999999999999875 346 999999 899988
Q ss_pred CCCC-------CCcEEEecCCCCCCCCCcEEEecccC
Q 032721 105 APSI-------PGVTHIGGDMFKSIPAADAIFMKVHH 134 (135)
Q Consensus 105 a~~~-------~rv~~~~gd~~~~~p~~D~~~l~~vl 134 (135)
|++. .++++..+|+.+.....|++++..++
T Consensus 93 a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l 129 (219)
T TIGR02021 93 ARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVL 129 (219)
T ss_pred HHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHH
Confidence 7642 37999999985533235999876553
No 20
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.88 E-value=4.9e-10 Score=70.82 Aligned_cols=64 Identities=22% Similarity=0.284 Sum_probs=44.3
Q ss_pred EeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------C---CcEEEecCCCCCCC--CCcEEEecccC
Q 032721 70 VDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------P---GVTHIGGDMFKSIP--AADAIFMKVHH 134 (135)
Q Consensus 70 vDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~---rv~~~~gd~~~~~p--~~D~~~l~~vl 134 (135)
||||||+|.++..+++++|..+ ++++|+ |.+++.+++. . ++++...|.++..+ ..|++++.++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~-~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDAR-YTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEE-EEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhH
Confidence 7999999999999999999999 999999 9999888764 1 34555555555433 34999999886
No 21
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.86 E-value=4.9e-09 Score=78.53 Aligned_cols=65 Identities=28% Similarity=0.314 Sum_probs=56.6
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCCCCC--CcEEEec
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA--ADAIFMK 131 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~~p~--~D~~~l~ 131 (135)
..+|+|+|||+|.++..+++++|+.+ ++++|+ +.+++.|+++ .+++++.+|+++.+|. .|++++.
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~-v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~N 196 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAE-VDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSN 196 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEEC
Confidence 46899999999999999999999999 999999 8999888753 4799999999887764 4999863
No 22
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.84 E-value=1e-08 Score=71.90 Aligned_cols=73 Identities=22% Similarity=0.246 Sum_probs=60.6
Q ss_pred hccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCC---CCCCc
Q 032721 57 LDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS---IPAAD 126 (135)
Q Consensus 57 ~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~---~p~~D 126 (135)
+..+. ..+..+++|||||+|.++++++..+|+.+ ++.+|. +++++..+++ ++++.+.||.-+. +|..|
T Consensus 27 ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~-v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 27 LSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGR-VIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred HHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCce-EEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence 34554 66678999999999999999999999999 999998 8888877654 8999999998655 44469
Q ss_pred EEEec
Q 032721 127 AIFMK 131 (135)
Q Consensus 127 ~~~l~ 131 (135)
.+++.
T Consensus 105 aiFIG 109 (187)
T COG2242 105 AIFIG 109 (187)
T ss_pred EEEEC
Confidence 99874
No 23
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.83 E-value=5.1e-09 Score=79.25 Aligned_cols=64 Identities=25% Similarity=0.283 Sum_probs=56.2
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCCCCC--CcEEEec
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA--ADAIFMK 131 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~~p~--~D~~~l~ 131 (135)
.+|+|+|||+|.++..+++++|+.+ ++++|+ +.+++.|+++ .+++++.+|+++.+|. .|+++..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~-V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAE-VDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEEC
Confidence 5899999999999999999999999 999999 9999988754 4699999999887764 4999864
No 24
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.83 E-value=1e-08 Score=72.91 Aligned_cols=77 Identities=17% Similarity=0.142 Sum_probs=58.7
Q ss_pred HHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCC-CCC-
Q 032721 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IPA- 124 (135)
Q Consensus 54 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~-~p~- 124 (135)
+.+++.++ ..+..+|+|+|||+|..+..++++ ..+ ++++|+ +.+++.+++. .++++...|+.+. ++.
T Consensus 20 ~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~-V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 95 (197)
T PRK11207 20 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFD-VTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGE 95 (197)
T ss_pred HHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCE-EEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCC
Confidence 45666665 545589999999999999999986 456 999999 8888877642 4588888998654 444
Q ss_pred CcEEEecccC
Q 032721 125 ADAIFMKVHH 134 (135)
Q Consensus 125 ~D~~~l~~vl 134 (135)
.|+++...++
T Consensus 96 fD~I~~~~~~ 105 (197)
T PRK11207 96 YDFILSTVVL 105 (197)
T ss_pred cCEEEEecch
Confidence 4999887654
No 25
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.83 E-value=5.5e-08 Score=72.14 Aligned_cols=69 Identities=17% Similarity=0.204 Sum_probs=54.8
Q ss_pred CcceEEeecCCCCH----HHHHHHHHCC-----CCCeeEEeec-hHHHHhCCCC--------------------------
Q 032721 65 GVKRLVDVGGSAGD----CLRMILQKHP-----FICEGINFDL-PEVVAEAPSI-------------------------- 108 (135)
Q Consensus 65 ~~~~vvDvGgG~G~----~~~~l~~~~p-----~l~~~~~~D~-p~~~~~a~~~-------------------------- 108 (135)
+..+|+|+|||+|. ++..+++..| +.+ +++.|+ +.+++.|++.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~-I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVK-ILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeE-EEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 44699999999996 6667777665 456 999999 9999988752
Q ss_pred -------CCcEEEecCCCCCC-CC--CcEEEecccC
Q 032721 109 -------PGVTHIGGDMFKSI-PA--ADAIFMKVHH 134 (135)
Q Consensus 109 -------~rv~~~~gd~~~~~-p~--~D~~~l~~vl 134 (135)
.+|+|..+|+.+.. |. .|+|+++++|
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl 213 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVL 213 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhH
Confidence 26899999998863 33 3999999886
No 26
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.82 E-value=1.5e-08 Score=80.62 Aligned_cols=78 Identities=21% Similarity=0.224 Sum_probs=62.1
Q ss_pred HHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-----CCcEEEecCCCCC-CCC--
Q 032721 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPA-- 124 (135)
Q Consensus 54 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-----~rv~~~~gd~~~~-~p~-- 124 (135)
..+++.+. ..+..+|+|||||+|.++..+++.+ +.+ ++++|+ +.+++.|+++ .+++++.+|+++. +|.
T Consensus 256 e~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~-v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 256 KEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVH-VVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCE-EEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC
Confidence 44666665 6666799999999999999998876 667 999999 8888887543 5799999999875 554
Q ss_pred CcEEEecccC
Q 032721 125 ADAIFMKVHH 134 (135)
Q Consensus 125 ~D~~~l~~vl 134 (135)
.|+++...++
T Consensus 333 fD~I~s~~~l 342 (475)
T PLN02336 333 FDVIYSRDTI 342 (475)
T ss_pred EEEEEECCcc
Confidence 3999987654
No 27
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.82 E-value=2.4e-08 Score=73.13 Aligned_cols=93 Identities=15% Similarity=0.164 Sum_probs=66.1
Q ss_pred HHHHHHHHHhcccc------ccHHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-
Q 032721 37 MNGLMRKAMSGVSV------PFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI- 108 (135)
Q Consensus 37 ~~~~f~~~m~~~~~------~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~- 108 (135)
..+.|+++...|.. ..+..+++.++ ..+..+|+|+|||+|.++..+.+. ..+ ++++|+ |.+++.+++.
T Consensus 9 i~~~F~~aa~~Y~~~~~~q~~~a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~~~D~s~~~l~~a~~~~ 84 (251)
T PRK10258 9 IAAAFGRAAAHYEQHAELQRQSADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQ-VTALDLSPPMLAQARQKD 84 (251)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCe-EEEEECCHHHHHHHHhhC
Confidence 45566666665543 23455666665 445679999999999999888764 456 999999 9999988765
Q ss_pred CCcEEEecCCCCC-CCC--CcEEEeccc
Q 032721 109 PGVTHIGGDMFKS-IPA--ADAIFMKVH 133 (135)
Q Consensus 109 ~rv~~~~gd~~~~-~p~--~D~~~l~~v 133 (135)
..+.++.+|+.+. ++. .|+++....
T Consensus 85 ~~~~~~~~d~~~~~~~~~~fD~V~s~~~ 112 (251)
T PRK10258 85 AADHYLAGDIESLPLATATFDLAWSNLA 112 (251)
T ss_pred CCCCEEEcCcccCcCCCCcEEEEEECch
Confidence 4567888998542 343 399987654
No 28
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.81 E-value=3.8e-09 Score=77.03 Aligned_cols=77 Identities=19% Similarity=0.290 Sum_probs=51.9
Q ss_pred HhccCCCCCCcceEEeecCCCCHHHHHHHHHC-CCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCC-CCC--
Q 032721 56 VLDGYDGFKGVKRLVDVGGSAGDCLRMILQKH-PFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IPA-- 124 (135)
Q Consensus 56 ~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~-p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~-~p~-- 124 (135)
+++... ..+..+|+|+|||||.++..++++. |+.+ ++++|+ +.|++.|++. .+|+++.+|..+- +|.
T Consensus 39 ~~~~~~-~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~-v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~s 116 (233)
T PF01209_consen 39 LIKLLG-LRPGDRVLDVACGTGDVTRELARRVGPNGK-VVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNS 116 (233)
T ss_dssp HHHHHT---S--EEEEET-TTSHHHHHHGGGSS---E-EEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-
T ss_pred HHhccC-CCCCCEEEEeCCChHHHHHHHHHHCCCccE-EEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCc
Confidence 444443 4455799999999999999999875 5677 999999 9999998752 5899999999542 444
Q ss_pred CcEEEecccC
Q 032721 125 ADAIFMKVHH 134 (135)
Q Consensus 125 ~D~~~l~~vl 134 (135)
.|++++...|
T Consensus 117 fD~v~~~fgl 126 (233)
T PF01209_consen 117 FDAVTCSFGL 126 (233)
T ss_dssp EEEEEEES-G
T ss_pred eeEEEHHhhH
Confidence 3999987655
No 29
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.81 E-value=2.2e-08 Score=65.12 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=58.1
Q ss_pred HhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCC---CC-C
Q 032721 56 VLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS---IP-A 124 (135)
Q Consensus 56 ~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~---~p-~ 124 (135)
+++.+. .....+++|+|||+|.++..+++++|+.+ ++++|. +.+++.++++ ++++++.+|.... .+ .
T Consensus 11 ~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 11 TLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGR-VYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCce-EEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCC
Confidence 444554 54557999999999999999999999988 999999 8888877542 5789988886532 22 3
Q ss_pred CcEEEecc
Q 032721 125 ADAIFMKV 132 (135)
Q Consensus 125 ~D~~~l~~ 132 (135)
.|++++..
T Consensus 89 ~D~v~~~~ 96 (124)
T TIGR02469 89 PDRVFIGG 96 (124)
T ss_pred CCEEEECC
Confidence 59998764
No 30
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.80 E-value=1.4e-08 Score=71.84 Aligned_cols=66 Identities=20% Similarity=0.099 Sum_probs=54.7
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCCCC--CCcEEEecc
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP--AADAIFMKV 132 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~~p--~~D~~~l~~ 132 (135)
..+|+|||||+|.++..++++.|..+ ++++|. +.+++.|+++ ++++++.+|..+..+ ..|++++..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~-V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~ 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELK-VTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRA 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCe-EEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEcc
Confidence 57999999999999999999999999 999999 8888877652 459999999855322 259998864
No 31
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.80 E-value=1.6e-08 Score=74.90 Aligned_cols=78 Identities=19% Similarity=0.280 Sum_probs=61.8
Q ss_pred HHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC----CCcEEEecCCCCC-CCC--
Q 032721 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKS-IPA-- 124 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~----~rv~~~~gd~~~~-~p~-- 124 (135)
...+++.++ ..+..+|||||||+|..+..+++.+ ..+ ++++|+ |.+++.+++. ++++++.+|+.+. +|.
T Consensus 41 ~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~-v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~ 117 (263)
T PTZ00098 41 TTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAH-VHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENT 117 (263)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCE-EEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCC
Confidence 456777776 7777899999999999999998765 567 999999 8888877642 5799999999764 554
Q ss_pred CcEEEeccc
Q 032721 125 ADAIFMKVH 133 (135)
Q Consensus 125 ~D~~~l~~v 133 (135)
.|+++...+
T Consensus 118 FD~V~s~~~ 126 (263)
T PTZ00098 118 FDMIYSRDA 126 (263)
T ss_pred eEEEEEhhh
Confidence 399998653
No 32
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=2.5e-08 Score=74.65 Aligned_cols=77 Identities=14% Similarity=0.133 Sum_probs=62.5
Q ss_pred HHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCCCCC-
Q 032721 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA- 124 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~~p~- 124 (135)
.+-+++.++ .....+|+|+|||.|.+++.+++.+|+.+ ++.+|. ..+++.|+++ ++.++...|.++++..
T Consensus 147 S~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~-vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~k 224 (300)
T COG2813 147 SRLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAK-LTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGK 224 (300)
T ss_pred HHHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCe-EEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccc
Confidence 345667787 55456999999999999999999999999 999999 8889988875 3336777899988655
Q ss_pred CcEEEec
Q 032721 125 ADAIFMK 131 (135)
Q Consensus 125 ~D~~~l~ 131 (135)
-|+|++.
T Consensus 225 fd~IisN 231 (300)
T COG2813 225 FDLIISN 231 (300)
T ss_pred ccEEEeC
Confidence 5888764
No 33
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.79 E-value=1.1e-08 Score=76.58 Aligned_cols=64 Identities=22% Similarity=0.339 Sum_probs=55.8
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCCCCC--CcEEEec
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA--ADAIFMK 131 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~~p~--~D~~~l~ 131 (135)
.+|+|+|||+|.++..+++..|+.+ ++++|+ +.+++.|+++ .+++++.+|+++.++. .|+++..
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~-v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAE-VIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEEC
Confidence 5899999999999999999999999 999999 8899888753 3599999999988764 4988763
No 34
>PLN02244 tocopherol O-methyltransferase
Probab=98.78 E-value=2.6e-08 Score=76.37 Aligned_cols=68 Identities=25% Similarity=0.263 Sum_probs=54.5
Q ss_pred CCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCC-CCC--CcEEEecc
Q 032721 64 KGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IPA--ADAIFMKV 132 (135)
Q Consensus 64 ~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~-~p~--~D~~~l~~ 132 (135)
.+..+|||||||+|.++..+++++ +.+ ++++|+ +.+++.+++. ++++++.+|+.+. +|. .|+++...
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~-v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~ 194 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GAN-VKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSME 194 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECC
Confidence 445799999999999999999988 667 999999 8888876542 5799999999663 443 39998765
Q ss_pred c
Q 032721 133 H 133 (135)
Q Consensus 133 v 133 (135)
.
T Consensus 195 ~ 195 (340)
T PLN02244 195 S 195 (340)
T ss_pred c
Confidence 4
No 35
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.77 E-value=1.2e-08 Score=71.77 Aligned_cols=66 Identities=18% Similarity=0.106 Sum_probs=53.0
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCCCC--CCcEEEecc
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP--AADAIFMKV 132 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~~p--~~D~~~l~~ 132 (135)
..+|+|||||+|.++..++..+|+.+ ++++|. +.+++.++++ ++++++.+|..+-.+ ..|++++..
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~-V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~ 117 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELK-LTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA 117 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCe-EEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh
Confidence 47999999999999999999999989 999999 7777766432 579999999865322 359988754
No 36
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.77 E-value=1.5e-08 Score=74.54 Aligned_cols=94 Identities=16% Similarity=0.167 Sum_probs=66.1
Q ss_pred hHHHHHHHHHhcccccc---------HHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhC
Q 032721 36 EMNGLMRKAMSGVSVPF---------MTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEA 105 (135)
Q Consensus 36 ~~~~~f~~~m~~~~~~~---------~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a 105 (135)
++...|.+.+.+..... ...+++.++ ++..+|+|+|||+|.++..+++. ..+ ++++|+ +.+++.|
T Consensus 8 ~~a~~f~~~~y~~~~g~~r~~~~~~~~~~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~--g~~-v~~vD~s~~~l~~a 82 (255)
T PRK11036 8 DIAEKFSRNIYGTTKGQIRQAILWQDLDRLLAELP--PRPLRVLDAGGGEGQTAIKLAEL--GHQ-VILCDLSAEMIQRA 82 (255)
T ss_pred hHHHHHHHhccCCCccHHHHHHHHHHHHHHHHhcC--CCCCEEEEeCCCchHHHHHHHHc--CCE-EEEEECCHHHHHHH
Confidence 34566666665544321 234555543 34479999999999999999987 356 999999 8999888
Q ss_pred CCC-------CCcEEEecCCCCC--CC-C-CcEEEecccC
Q 032721 106 PSI-------PGVTHIGGDMFKS--IP-A-ADAIFMKVHH 134 (135)
Q Consensus 106 ~~~-------~rv~~~~gd~~~~--~p-~-~D~~~l~~vl 134 (135)
++. ++++++.+|+.+- .+ . .|++++..+|
T Consensus 83 ~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 83 KQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred HHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 642 5789999988542 23 2 4999988764
No 37
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.76 E-value=4.4e-08 Score=72.49 Aligned_cols=71 Identities=25% Similarity=0.191 Sum_probs=56.2
Q ss_pred CCCcceEEeecCCCCHHHHHHHHHC-CCCCeeEEeec-hHHHHhCCCC---------CCcEEEecCCCCC-CCC--CcEE
Q 032721 63 FKGVKRLVDVGGSAGDCLRMILQKH-PFICEGINFDL-PEVVAEAPSI---------PGVTHIGGDMFKS-IPA--ADAI 128 (135)
Q Consensus 63 ~~~~~~vvDvGgG~G~~~~~l~~~~-p~l~~~~~~D~-p~~~~~a~~~---------~rv~~~~gd~~~~-~p~--~D~~ 128 (135)
..+..+|+|||||+|.++..++++. |+.+ ++++|+ +.+++.|++. ++++++.+|..+- +|. .|++
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~-V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V 149 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGK-VMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAI 149 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEE
Confidence 4455799999999999999999875 5677 999999 9999987532 4799999998542 444 3999
Q ss_pred EecccC
Q 032721 129 FMKVHH 134 (135)
Q Consensus 129 ~l~~vl 134 (135)
++...|
T Consensus 150 ~~~~~l 155 (261)
T PLN02233 150 TMGYGL 155 (261)
T ss_pred EEeccc
Confidence 887654
No 38
>PRK08317 hypothetical protein; Provisional
Probab=98.75 E-value=3.4e-08 Score=70.94 Aligned_cols=78 Identities=22% Similarity=0.236 Sum_probs=61.0
Q ss_pred HHhccCCCCCCcceEEeecCCCCHHHHHHHHHC-CCCCeeEEeec-hHHHHhCCCC-----CCcEEEecCCCCC-CCC--
Q 032721 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKH-PFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPA-- 124 (135)
Q Consensus 55 ~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~-p~l~~~~~~D~-p~~~~~a~~~-----~rv~~~~gd~~~~-~p~-- 124 (135)
.+++.++ ..+..+|||+|||+|.++..+++.+ |..+ ++++|+ +..++.+++. .++++..+|+.+. ++.
T Consensus 10 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~-v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~ 87 (241)
T PRK08317 10 RTFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGR-VVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGS 87 (241)
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcE-EEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCC
Confidence 3455555 6666899999999999999999988 6778 999999 8888776543 5789999998653 433
Q ss_pred CcEEEecccC
Q 032721 125 ADAIFMKVHH 134 (135)
Q Consensus 125 ~D~~~l~~vl 134 (135)
.|++++.+++
T Consensus 88 ~D~v~~~~~~ 97 (241)
T PRK08317 88 FDAVRSDRVL 97 (241)
T ss_pred ceEEEEechh
Confidence 4999988764
No 39
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.75 E-value=3.2e-08 Score=75.91 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=58.8
Q ss_pred HHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-----CCcEEEecCCCCCCCC-CcE
Q 032721 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIPA-ADA 127 (135)
Q Consensus 55 ~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-----~rv~~~~gd~~~~~p~-~D~ 127 (135)
.+++.++ .....+|+|+|||+|.++..+++++|+.+ ++++|. +.+++.++.+ -..+++.+|.++..+. .|+
T Consensus 187 lLl~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~-v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDl 264 (342)
T PRK09489 187 LLLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIR-LTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDM 264 (342)
T ss_pred HHHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccE
Confidence 3455554 33346899999999999999999999999 999999 8888888653 2456788898876655 499
Q ss_pred EEec
Q 032721 128 IFMK 131 (135)
Q Consensus 128 ~~l~ 131 (135)
+++.
T Consensus 265 IvsN 268 (342)
T PRK09489 265 IISN 268 (342)
T ss_pred EEEC
Confidence 9875
No 40
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.73 E-value=2.6e-08 Score=77.86 Aligned_cols=65 Identities=22% Similarity=0.294 Sum_probs=55.5
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-----CCcEEEecCCCCC-CCC---CcEEEec
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPA---ADAIFMK 131 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-----~rv~~~~gd~~~~-~p~---~D~~~l~ 131 (135)
..+++|+|||+|.++..+++++|+.+ ++++|+ |.+++.|+++ .+++++.+|+++. .|. .|++++.
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~-VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSN 326 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAF-VRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSN 326 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEEC
Confidence 35899999999999999999999999 999999 9999988764 4799999999875 432 4988863
No 41
>PRK06202 hypothetical protein; Provisional
Probab=98.73 E-value=7.6e-08 Score=69.81 Aligned_cols=70 Identities=21% Similarity=0.135 Sum_probs=51.4
Q ss_pred CCcceEEeecCCCCHHHHHHHHH----CCCCCeeEEeec-hHHHHhCCCC---CCcEEEecCC--CCCCCC-CcEEEecc
Q 032721 64 KGVKRLVDVGGSAGDCLRMILQK----HPFICEGINFDL-PEVVAEAPSI---PGVTHIGGDM--FKSIPA-ADAIFMKV 132 (135)
Q Consensus 64 ~~~~~vvDvGgG~G~~~~~l~~~----~p~l~~~~~~D~-p~~~~~a~~~---~rv~~~~gd~--~~~~p~-~D~~~l~~ 132 (135)
.+..+|+|||||+|.++..|++. .|+.+ ++++|+ |.+++.|++. .++++...+. +...+. .|++++..
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLE-VTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH 137 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcE-EEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence 45579999999999998888764 45678 999999 9999988764 4566655443 222222 49999987
Q ss_pred cC
Q 032721 133 HH 134 (135)
Q Consensus 133 vl 134 (135)
+|
T Consensus 138 ~l 139 (232)
T PRK06202 138 FL 139 (232)
T ss_pred ee
Confidence 65
No 42
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.73 E-value=1.8e-08 Score=72.46 Aligned_cols=66 Identities=23% Similarity=0.286 Sum_probs=54.0
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCC-CCC-CcEEEeccc
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IPA-ADAIFMKVH 133 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~-~p~-~D~~~l~~v 133 (135)
++|||||||+|.++..+++++|+.+ ++++|+ +.+++.+++. ++++++.+|+.+. .+. .|+++...+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~-v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQ-LHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEV 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHH
Confidence 3799999999999999999999988 999999 8887776542 5789999999655 344 499986554
No 43
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.71 E-value=2.3e-08 Score=80.33 Aligned_cols=64 Identities=20% Similarity=0.233 Sum_probs=55.6
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCCCCC--CcEEEe
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA--ADAIFM 130 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~~p~--~D~~~l 130 (135)
..+|+|+|||+|.++..+++++|+.+ ++++|+ |.+++.|+++ ++++++.+|+++.++. .|+++.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~-v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvs 212 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNAN-VIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVS 212 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCe-EEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEE
Confidence 35899999999999999999999999 999999 8899988753 4799999999887654 499886
No 44
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.70 E-value=8.3e-08 Score=69.17 Aligned_cols=78 Identities=14% Similarity=0.154 Sum_probs=59.9
Q ss_pred HHhccCCCCCCcceEEeecCCCCHHHHHHHHHCC-CCCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCC-CCC
Q 032721 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHP-FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IPA 124 (135)
Q Consensus 55 ~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p-~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~-~p~ 124 (135)
.++..+. ..+..+|+|+|||+|.++..+++..| +.+ ++++|+ +.+++.+++. .+++++.+|+.+. .+.
T Consensus 42 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 119 (239)
T PRK00216 42 KTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGE-VVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPD 119 (239)
T ss_pred HHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCC
Confidence 4455554 44457999999999999999999998 677 999999 7787776543 4689999999764 332
Q ss_pred --CcEEEecccC
Q 032721 125 --ADAIFMKVHH 134 (135)
Q Consensus 125 --~D~~~l~~vl 134 (135)
.|++++.+++
T Consensus 120 ~~~D~I~~~~~l 131 (239)
T PRK00216 120 NSFDAVTIAFGL 131 (239)
T ss_pred CCccEEEEeccc
Confidence 4999887654
No 45
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.69 E-value=4.4e-08 Score=71.35 Aligned_cols=64 Identities=27% Similarity=0.390 Sum_probs=55.0
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCCCCC--CcEEEe
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA--ADAIFM 130 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~~p~--~D~~~l 130 (135)
..+|+|+|||+|.++..+++.+|+.+ ++++|. +.+++.++.+ ++++++.+|+++..+. .|++++
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~ 160 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDAR-VTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVS 160 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEE
Confidence 35899999999999999999999999 999999 8888887643 4699999999887653 499876
No 46
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.69 E-value=4.5e-08 Score=70.46 Aligned_cols=68 Identities=25% Similarity=0.328 Sum_probs=56.2
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC--CCcEEEecCCCCC-CCC--CcEEEecccC
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI--PGVTHIGGDMFKS-IPA--ADAIFMKVHH 134 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~--~rv~~~~gd~~~~-~p~--~D~~~l~~vl 134 (135)
..+|+|||||+|.++..+++..|+.+ ++++|+ +.++..++.. ++++++.+|+.+. .+. .|+++..+++
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l 108 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAE-FIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLAL 108 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCc-EEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhh
Confidence 36899999999999999999999999 999999 8888776653 5789999998654 333 4999987764
No 47
>PRK04457 spermidine synthase; Provisional
Probab=98.68 E-value=3.4e-08 Score=73.23 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=55.5
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCC---CCC-CcEEEec
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS---IPA-ADAIFMK 131 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~---~p~-~D~~~l~ 131 (135)
+.++|+|||||+|.++..+++.+|+.+ ++++|+ |.+++.|+++ +|++++.+|..+. .+. .|++++.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~-v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTR-QTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 457899999999999999999999999 999999 9999987642 6899999998543 344 4999864
No 48
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.67 E-value=1e-07 Score=68.08 Aligned_cols=78 Identities=14% Similarity=0.078 Sum_probs=59.2
Q ss_pred HHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCC-CCCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCCCCC
Q 032721 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHP-FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA 124 (135)
Q Consensus 54 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p-~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~~p~ 124 (135)
..+++.++ ..+..+|+|||||+|.++..+++..+ ..+ ++.+|. |.+++.|+++ .+++++.+|+.+.+|.
T Consensus 62 ~~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~-V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~ 139 (205)
T PRK13944 62 AMMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGK-VYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK 139 (205)
T ss_pred HHHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc
Confidence 34455554 55557999999999999999998765 446 999999 8888877642 3589999999776543
Q ss_pred ---CcEEEeccc
Q 032721 125 ---ADAIFMKVH 133 (135)
Q Consensus 125 ---~D~~~l~~v 133 (135)
.|++++...
T Consensus 140 ~~~fD~Ii~~~~ 151 (205)
T PRK13944 140 HAPFDAIIVTAA 151 (205)
T ss_pred CCCccEEEEccC
Confidence 499987654
No 49
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.67 E-value=2.7e-08 Score=72.86 Aligned_cols=75 Identities=16% Similarity=0.196 Sum_probs=59.6
Q ss_pred HhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCC---CCC
Q 032721 56 VLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS---IPA 124 (135)
Q Consensus 56 ~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~---~p~ 124 (135)
++..+...+...+|+|+|||+|.++..++++.++.+ ++++|+ +.+.+.|+++ +||+++..|+-+. .+.
T Consensus 35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~-I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~ 113 (248)
T COG4123 35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAK-IVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF 113 (248)
T ss_pred HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCc-EEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc
Confidence 444443244478999999999999999999999999 999999 8888888753 7999999998543 222
Q ss_pred --CcEEEec
Q 032721 125 --ADAIFMK 131 (135)
Q Consensus 125 --~D~~~l~ 131 (135)
.|+|++.
T Consensus 114 ~~fD~Ii~N 122 (248)
T COG4123 114 ASFDLIICN 122 (248)
T ss_pred cccCEEEeC
Confidence 3888764
No 50
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.67 E-value=1.2e-07 Score=68.24 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=61.2
Q ss_pred HHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCC-CCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCCCC-
Q 032721 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHP-FICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP- 123 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p-~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~~p- 123 (135)
...+++.++ ..+..+|+|||||+|.++..+++..+ +.+ ++.+|. |.+++.++++ .+++++.+|.++..+
T Consensus 65 ~~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~-V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~ 142 (212)
T PRK13942 65 VAIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGK-VVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEE 142 (212)
T ss_pred HHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCc
Confidence 345666666 66778999999999999998888754 456 999999 8899888653 579999999977643
Q ss_pred C--CcEEEecc
Q 032721 124 A--ADAIFMKV 132 (135)
Q Consensus 124 ~--~D~~~l~~ 132 (135)
. .|++++..
T Consensus 143 ~~~fD~I~~~~ 153 (212)
T PRK13942 143 NAPYDRIYVTA 153 (212)
T ss_pred CCCcCEEEECC
Confidence 2 39998754
No 51
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.66 E-value=1.1e-07 Score=68.40 Aligned_cols=77 Identities=16% Similarity=0.184 Sum_probs=60.7
Q ss_pred HHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCC-CCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCCCCC-
Q 032721 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHP-FICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA- 124 (135)
Q Consensus 54 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p-~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~~p~- 124 (135)
..+++.++ ..+..+|+|||||+|.++..+++..+ +.+ ++.+|. |.+++.|+++ ++++++.+|..+..+.
T Consensus 67 ~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~-V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~ 144 (215)
T TIGR00080 67 AMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGL-VVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPL 144 (215)
T ss_pred HHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCccc
Confidence 45566665 66668999999999999999999865 466 999998 8899887653 5799999999765432
Q ss_pred --CcEEEecc
Q 032721 125 --ADAIFMKV 132 (135)
Q Consensus 125 --~D~~~l~~ 132 (135)
.|++++..
T Consensus 145 ~~fD~Ii~~~ 154 (215)
T TIGR00080 145 APYDRIYVTA 154 (215)
T ss_pred CCCCEEEEcC
Confidence 49998764
No 52
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.66 E-value=9.4e-08 Score=66.22 Aligned_cols=73 Identities=14% Similarity=0.279 Sum_probs=56.8
Q ss_pred HHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC----CCcEEEecCCCCC-CCC--C
Q 032721 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKS-IPA--A 125 (135)
Q Consensus 54 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~----~rv~~~~gd~~~~-~p~--~ 125 (135)
..+++.++ ..+..+++|||||+|.++..++++ ..+ ++++|+ +.+++.++++ ++++++.+|+.+- .+. .
T Consensus 3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~-v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AAR-VTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCe-EEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCC
Confidence 45667776 666679999999999999999997 456 999999 7788877643 5899999999775 343 3
Q ss_pred cEEEe
Q 032721 126 DAIFM 130 (135)
Q Consensus 126 D~~~l 130 (135)
|.++.
T Consensus 79 d~vi~ 83 (169)
T smart00650 79 YKVVG 83 (169)
T ss_pred CEEEE
Confidence 66643
No 53
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.66 E-value=6.4e-08 Score=71.32 Aligned_cols=64 Identities=22% Similarity=0.219 Sum_probs=54.0
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC---CCcEEEecCCCCCCC----C-CcEEEec
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI---PGVTHIGGDMFKSIP----A-ADAIFMK 131 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~---~rv~~~~gd~~~~~p----~-~D~~~l~ 131 (135)
.+++|+|||+|.++..+++..|..+ ++++|. |.+++.|+++ .+++++.+|+++.++ . .|++++.
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~~-v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~N 160 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGIE-LHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAAN 160 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEEC
Confidence 5899999999999999999999988 999999 9999988765 346889999987643 2 4888753
No 54
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.66 E-value=4.5e-08 Score=60.49 Aligned_cols=63 Identities=21% Similarity=0.303 Sum_probs=50.3
Q ss_pred EeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC---CCcEEEecCCCCC-CCC--CcEEEecccC
Q 032721 70 VDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI---PGVTHIGGDMFKS-IPA--ADAIFMKVHH 134 (135)
Q Consensus 70 vDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~---~rv~~~~gd~~~~-~p~--~D~~~l~~vl 134 (135)
||+|||+|..+..++++ +..+ ++++|. +++++.+++. .+++++.+|+.+- +|. .|++++.+++
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~-v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGAS-VTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCE-EEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHG
T ss_pred CEecCcCCHHHHHHHhc-cCCE-EEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccce
Confidence 79999999999999998 7778 999999 8888888753 5677999998654 443 3999988764
No 55
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.64 E-value=8.5e-08 Score=70.92 Aligned_cols=66 Identities=27% Similarity=0.401 Sum_probs=56.0
Q ss_pred CCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCCCC-C-CcEEEe
Q 032721 64 KGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP-A-ADAIFM 130 (135)
Q Consensus 64 ~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~~p-~-~D~~~l 130 (135)
.+..+|+|+|||+|.++..+++..|..+ ++++|+ +.+++.++++ .+++++.+|++++.+ . .|+++.
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~-v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~ 181 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAE-VTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVS 181 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEE
Confidence 3457899999999999999999999999 999999 8888877643 579999999988765 2 499876
No 56
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.62 E-value=5.2e-08 Score=61.79 Aligned_cols=61 Identities=25% Similarity=0.434 Sum_probs=47.4
Q ss_pred EEeecCCCCHHHHHHHHHC---CCCCeeEEeec-hHHHHhCCCC-----CCcEEEecCCCCCCC----CCcEEEec
Q 032721 69 LVDVGGSAGDCLRMILQKH---PFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIP----AADAIFMK 131 (135)
Q Consensus 69 vvDvGgG~G~~~~~l~~~~---p~l~~~~~~D~-p~~~~~a~~~-----~rv~~~~gd~~~~~p----~~D~~~l~ 131 (135)
|+|+|||+|..+..+++.+ |+.+ ++++|+ +.+++.+++. .+++++.+|+.+ +| ..|+|++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~-~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~-l~~~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSR-VIGVDISPEMLELAKKRFSEDGPKVRFVQADARD-LPFSDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SE-EEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTC-HHHHSSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccce-EEEEECCHHHHHHHHHhchhcCCceEEEECCHhH-CcccCCCeeEEEEc
Confidence 7999999999999999987 4567 999999 9999887653 489999999955 43 24999984
No 57
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.61 E-value=1.1e-07 Score=67.49 Aligned_cols=77 Identities=16% Similarity=0.106 Sum_probs=55.7
Q ss_pred HHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-----CCcEEEecCCCCC-CCC-C
Q 032721 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPA-A 125 (135)
Q Consensus 54 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-----~rv~~~~gd~~~~-~p~-~ 125 (135)
..+++.++ ..+..+|+|+|||+|..+..++++ ..+ ++++|+ |.+++.+++. -++++...|+... ++. .
T Consensus 20 ~~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~-V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f 95 (195)
T TIGR00477 20 SAVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYD-VRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDY 95 (195)
T ss_pred HHHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCe-EEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCC
Confidence 45666665 444579999999999999999985 457 999999 8888876532 2467777787443 333 4
Q ss_pred cEEEecccC
Q 032721 126 DAIFMKVHH 134 (135)
Q Consensus 126 D~~~l~~vl 134 (135)
|+++...++
T Consensus 96 D~I~~~~~~ 104 (195)
T TIGR00477 96 DFIFSTVVF 104 (195)
T ss_pred CEEEEeccc
Confidence 999876553
No 58
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.61 E-value=9.6e-08 Score=73.19 Aligned_cols=68 Identities=25% Similarity=0.208 Sum_probs=56.4
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC---CCcEEEecCCCCC-CCC--CcEEEecccC
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI---PGVTHIGGDMFKS-IPA--ADAIFMKVHH 134 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~---~rv~~~~gd~~~~-~p~--~D~~~l~~vl 134 (135)
..+|||||||+|.++..+++..|..+ ++++|+ +.+++.+++. .+++++.+|+.+. ++. .|++++.++|
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~-VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L 188 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChh
Confidence 46999999999999999999988888 999999 8898888754 5789999998653 443 4999987654
No 59
>PRK05785 hypothetical protein; Provisional
Probab=98.60 E-value=1.3e-07 Score=68.72 Aligned_cols=65 Identities=11% Similarity=0.103 Sum_probs=51.3
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCCCCcEEEecCCCCC-CCC--CcEEEecccC
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPA--ADAIFMKVHH 134 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~~rv~~~~gd~~~~-~p~--~D~~~l~~vl 134 (135)
..+|+|||||||.++..+++.+ +.+ ++++|+ +.+++.|++. ..++.+|+.+- +|. .|++++...|
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~-~~~-v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l 120 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF-KYY-VVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFAL 120 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc-CCE-EEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChh
Confidence 4799999999999999999987 567 999999 9999998764 34567887542 333 3999987655
No 60
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.60 E-value=1.4e-07 Score=73.30 Aligned_cols=74 Identities=19% Similarity=0.260 Sum_probs=55.9
Q ss_pred HhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCC------CCCcEEEecCCC---CCCCCC
Q 032721 56 VLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPS------IPGVTHIGGDMF---KSIPAA 125 (135)
Q Consensus 56 ~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~------~~rv~~~~gd~~---~~~p~~ 125 (135)
+++.+. -.....+||||||+|.++..+++++|+.. ++++|+ +.+++.+.+ .+++.++.+|.. +.+|..
T Consensus 114 ~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~-~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 114 FLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKL-FIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCC-EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 444443 23346899999999999999999999999 999999 778776643 267999999973 335542
Q ss_pred --cEEEec
Q 032721 126 --DAIFMK 131 (135)
Q Consensus 126 --D~~~l~ 131 (135)
|.+++.
T Consensus 192 s~D~I~ln 199 (390)
T PRK14121 192 SVEKIFVH 199 (390)
T ss_pred ceeEEEEe
Confidence 777653
No 61
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.59 E-value=1.4e-07 Score=69.67 Aligned_cols=74 Identities=14% Similarity=0.213 Sum_probs=57.1
Q ss_pred HHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC----CCcEEEecCCCCC-CCCCc
Q 032721 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKS-IPAAD 126 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~----~rv~~~~gd~~~~-~p~~D 126 (135)
...+++..+ ..+..+|+|||||+|.++..++++. .+ ++++|+ +.+++.+++. ++++++.+|+++- +|..|
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~-v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d 93 (258)
T PRK14896 18 VDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KK-VYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFN 93 (258)
T ss_pred HHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CE-EEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhce
Confidence 455666665 5566899999999999999999984 46 999999 7888777542 6799999999774 45557
Q ss_pred EEEe
Q 032721 127 AIFM 130 (135)
Q Consensus 127 ~~~l 130 (135)
.++.
T Consensus 94 ~Vv~ 97 (258)
T PRK14896 94 KVVS 97 (258)
T ss_pred EEEE
Confidence 6654
No 62
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.59 E-value=1e-07 Score=66.57 Aligned_cols=64 Identities=22% Similarity=0.361 Sum_probs=52.6
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-----CCcEEEecCCCCCCCC-CcEEEec
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIPA-ADAIFMK 131 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-----~rv~~~~gd~~~~~p~-~D~~~l~ 131 (135)
+..+|+|+|||+|.++..+++..+ + ++++|+ |.+++.++++ .+++++.+|+++..+. .|++++.
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n 89 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--C-ILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFN 89 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--E-EEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEEC
Confidence 346899999999999999999877 6 999999 9999887653 3688899998775443 5999875
No 63
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.59 E-value=1.2e-07 Score=70.59 Aligned_cols=65 Identities=14% Similarity=0.251 Sum_probs=53.3
Q ss_pred HHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC---CCcEEEecCCCCC
Q 032721 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI---PGVTHIGGDMFKS 121 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~---~rv~~~~gd~~~~ 121 (135)
+..+++.++ ..+..+|+|||||+|.++..++++.+ + ++++|. +.+++.+++. ++++++.+|+.+-
T Consensus 31 ~~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~-v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~ 99 (272)
T PRK00274 31 LDKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--K-VTAVEIDRDLAPILAETFAEDNLTIIEGDALKV 99 (272)
T ss_pred HHHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--c-EEEEECCHHHHHHHHHhhccCceEEEEChhhcC
Confidence 345666665 66667999999999999999999976 6 999999 8898887653 6899999999764
No 64
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.58 E-value=1.2e-07 Score=67.22 Aligned_cols=73 Identities=21% Similarity=0.179 Sum_probs=56.6
Q ss_pred HhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCC---C-CC
Q 032721 56 VLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS---I-PA 124 (135)
Q Consensus 56 ~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~---~-p~ 124 (135)
+++.++ .....+|+|+|||+|.++..+++..|..+ ++++|+ |.+++.++++ ++++++.+|..+. + +.
T Consensus 32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~-V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (196)
T PRK07402 32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGR-VIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA 109 (196)
T ss_pred HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence 455555 55667999999999999999999889888 999999 9899887653 5789999987542 2 23
Q ss_pred CcEEEe
Q 032721 125 ADAIFM 130 (135)
Q Consensus 125 ~D~~~l 130 (135)
.|.+++
T Consensus 110 ~d~v~~ 115 (196)
T PRK07402 110 PDRVCI 115 (196)
T ss_pred CCEEEE
Confidence 466554
No 65
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.58 E-value=7.3e-08 Score=68.29 Aligned_cols=65 Identities=15% Similarity=0.277 Sum_probs=53.0
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCC----CCC--CcEEEec
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS----IPA--ADAIFMK 131 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~----~p~--~D~~~l~ 131 (135)
..+++|||||+|.++..+++++|+.. ++++|+ +.+++.|.++ .+++++.+|+.+. +|. .|.+++.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~-v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKN-FLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCC-EEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 36899999999999999999999999 999999 8888877542 5899999998642 343 3777653
No 66
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.58 E-value=5e-08 Score=69.03 Aligned_cols=72 Identities=22% Similarity=0.273 Sum_probs=54.9
Q ss_pred cCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC----CCcEEEecCCCCCCCCC--cEEEec
Q 032721 59 GYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKSIPAA--DAIFMK 131 (135)
Q Consensus 59 ~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~----~rv~~~~gd~~~~~p~~--D~~~l~ 131 (135)
.++ -....+++|+|||.|.++..|+.++. + ++++|. +.+++.|++. ++|+++..|+-+..|.+ |+++++
T Consensus 38 aLp-~~ry~~alEvGCs~G~lT~~LA~rCd--~-LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~S 113 (201)
T PF05401_consen 38 ALP-RRRYRRALEVGCSIGVLTERLAPRCD--R-LLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLS 113 (201)
T ss_dssp HHT-TSSEEEEEEE--TTSHHHHHHGGGEE--E-EEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEE
T ss_pred hcC-ccccceeEecCCCccHHHHHHHHhhC--c-eEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEe
Confidence 455 66678999999999999999999863 3 999999 9999998752 78999999997667764 999999
Q ss_pred ccC
Q 032721 132 VHH 134 (135)
Q Consensus 132 ~vl 134 (135)
-|+
T Consensus 114 EVl 116 (201)
T PF05401_consen 114 EVL 116 (201)
T ss_dssp S-G
T ss_pred hHh
Confidence 875
No 67
>PHA03411 putative methyltransferase; Provisional
Probab=98.57 E-value=1.5e-07 Score=69.98 Aligned_cols=65 Identities=17% Similarity=0.240 Sum_probs=55.1
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-CCcEEEecCCCCCCC-C-CcEEEec
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKSIP-A-ADAIFMK 131 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-~rv~~~~gd~~~~~p-~-~D~~~l~ 131 (135)
..+|+|+|||+|.++..++++.+..+ ++++|+ |.+++.++++ ++++++.+|+++... . .|+++..
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~-V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsN 133 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEK-IVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISN 133 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEc
Confidence 36899999999999999999887778 999999 9999988765 689999999987543 2 4998873
No 68
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.55 E-value=2.2e-07 Score=66.95 Aligned_cols=67 Identities=21% Similarity=0.224 Sum_probs=52.3
Q ss_pred CCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCCCCC-CcEEEecccC
Q 032721 64 KGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA-ADAIFMKVHH 134 (135)
Q Consensus 64 ~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~~p~-~D~~~l~~vl 134 (135)
.+..+|+|||||+|.++..+++.. .+ ++++|+ +.+++.|++. .++++..+|+ +..+. .|++++..++
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~-v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~fD~v~~~~~l 137 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AK-VVASDISPQMVEEARERAPEAGLAGNITFEVGDL-ESLLGRFDTVVCLDVL 137 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CE-EEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc-hhccCCcCEEEEcchh
Confidence 345799999999999999999874 45 999999 8888887652 4789999994 43333 4999887654
No 69
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.54 E-value=2.9e-07 Score=65.67 Aligned_cols=78 Identities=15% Similarity=0.100 Sum_probs=59.4
Q ss_pred HHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCC-CCeeEEeec-hHHHHhCCCC----CCcEEEecCCCCC-CCC--C
Q 032721 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPF-ICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKS-IPA--A 125 (135)
Q Consensus 55 ~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~-l~~~~~~D~-p~~~~~a~~~----~rv~~~~gd~~~~-~p~--~ 125 (135)
.+++.+. ..+..+|+|+|||+|.++..+++.+|. .+ ++++|+ +.+++.+++. .+++++.+|+.+. .+. .
T Consensus 30 ~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~-~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 107 (223)
T TIGR01934 30 RAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGK-VTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSF 107 (223)
T ss_pred HHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCce-EEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcE
Confidence 3444443 445679999999999999999999997 67 999999 7887776542 5799999999764 333 4
Q ss_pred cEEEecccC
Q 032721 126 DAIFMKVHH 134 (135)
Q Consensus 126 D~~~l~~vl 134 (135)
|++++...+
T Consensus 108 D~i~~~~~~ 116 (223)
T TIGR01934 108 DAVTIAFGL 116 (223)
T ss_pred EEEEEeeee
Confidence 998876543
No 70
>PLN03075 nicotianamine synthase; Provisional
Probab=98.53 E-value=2.7e-07 Score=69.37 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=51.9
Q ss_pred CcceEEeecCCCCHH--HHHHHHHCCCCCeeEEeec-hHHHHhCCCC--------CCcEEEecCCCCCCC---CCcEEEe
Q 032721 65 GVKRLVDVGGSAGDC--LRMILQKHPFICEGINFDL-PEVVAEAPSI--------PGVTHIGGDMFKSIP---AADAIFM 130 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~--~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~--------~rv~~~~gd~~~~~p---~~D~~~l 130 (135)
..++|+|||||.|-+ ...+++.+|+.+ ++++|. |++++.|++. ++++|..+|..+..+ ..|++++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~-~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTS-FHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 568999999998844 334445789988 999999 9999887642 579999999977533 2499998
Q ss_pred c
Q 032721 131 K 131 (135)
Q Consensus 131 ~ 131 (135)
.
T Consensus 202 ~ 202 (296)
T PLN03075 202 A 202 (296)
T ss_pred e
Confidence 7
No 71
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.53 E-value=2e-07 Score=69.87 Aligned_cols=76 Identities=16% Similarity=0.083 Sum_probs=56.3
Q ss_pred HHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-----CCcEEEecCCCCC-CCC-Cc
Q 032721 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPA-AD 126 (135)
Q Consensus 55 ~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-----~rv~~~~gd~~~~-~p~-~D 126 (135)
.++..++ ..+..+|+|||||+|..+..+++. ..+ ++++|. +.+++.+++. -++++..+|+.+. ++. .|
T Consensus 111 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~la~~--g~~-V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD 186 (287)
T PRK12335 111 EVLEAVQ-TVKPGKALDLGCGQGRNSLYLALL--GFD-VTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYD 186 (287)
T ss_pred HHHHHhh-ccCCCCEEEeCCCCCHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCcc
Confidence 3444444 334469999999999999999885 467 999999 8888876542 3688888888654 444 49
Q ss_pred EEEecccC
Q 032721 127 AIFMKVHH 134 (135)
Q Consensus 127 ~~~l~~vl 134 (135)
+++...+|
T Consensus 187 ~I~~~~vl 194 (287)
T PRK12335 187 FILSTVVL 194 (287)
T ss_pred EEEEcchh
Confidence 99887664
No 72
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.53 E-value=3.3e-07 Score=68.10 Aligned_cols=65 Identities=22% Similarity=0.244 Sum_probs=52.5
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCCC---CeeEEeec-hHHHHhCCCC-CCcEEEecCCCCC-CCC--CcEEEe
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPFI---CEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKS-IPA--ADAIFM 130 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~l---~~~~~~D~-p~~~~~a~~~-~rv~~~~gd~~~~-~p~--~D~~~l 130 (135)
...+|+|||||+|.++..+++..|.. . ++++|+ +.+++.|++. +++++..+|..+- ++. .|+++.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~-v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~ 157 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQ-LFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIR 157 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCe-EEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEE
Confidence 34689999999999999999988754 5 899999 8999988654 7899999998652 333 388875
No 73
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.51 E-value=1.5e-07 Score=66.40 Aligned_cols=67 Identities=24% Similarity=0.443 Sum_probs=51.7
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCCCCcEEEecCCCCC---CCC-C-cEEEecccC
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS---IPA-A-DAIFMKVHH 134 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~~rv~~~~gd~~~~---~p~-~-D~~~l~~vl 134 (135)
+..+|+|+|||.|.++..|.++ .+.+ +.++|+ ++-+..+-+ ..+.++.+|.-+. +|. . |.++|++.|
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~-k~v~-g~GvEid~~~v~~cv~-rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtL 85 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDE-KQVD-GYGVEIDPDNVAACVA-RGVSVIQGDLDEGLADFPDQSFDYVILSQTL 85 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHh-cCCe-EEEEecCHHHHHHHHH-cCCCEEECCHHHhHhhCCCCCccEEehHhHH
Confidence 4489999999999999888885 6888 999998 554444432 4678999999665 454 3 999998765
No 74
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.50 E-value=1.7e-07 Score=66.84 Aligned_cols=66 Identities=20% Similarity=0.310 Sum_probs=53.5
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCC----CCC--CcEEEec
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS----IPA--ADAIFMK 131 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~----~p~--~D~~~l~ 131 (135)
+..+|+|+|||+|.++..+++..|+.+ ++++|+ +.+++.++++ ++++++.+|+.+. ++. .|++++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~-v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDIN-FIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCcc-EEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 347999999999999999999999988 999999 8899887642 6799999998322 333 3888763
No 75
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.49 E-value=3.8e-07 Score=67.11 Aligned_cols=77 Identities=12% Similarity=0.231 Sum_probs=57.7
Q ss_pred HHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC----CCcEEEecCCCCC-CCCCc
Q 032721 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKS-IPAAD 126 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~----~rv~~~~gd~~~~-~p~~D 126 (135)
...+++..+ ..+..+|+|||||+|.++..++++.+ + ++++|. +.+++.++.. ++++++.+|+.+. .+..|
T Consensus 18 ~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~-v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d 93 (253)
T TIGR00755 18 IQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAK--K-VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFP 93 (253)
T ss_pred HHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCC--c-EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcC
Confidence 345666665 66678999999999999999999986 4 888998 7787776542 6799999999764 33334
Q ss_pred --EEEeccc
Q 032721 127 --AIFMKVH 133 (135)
Q Consensus 127 --~~~l~~v 133 (135)
.++++|+
T Consensus 94 ~~~~vvsNl 102 (253)
T TIGR00755 94 KQLKVVSNL 102 (253)
T ss_pred CcceEEEcC
Confidence 4555554
No 76
>PHA03412 putative methyltransferase; Provisional
Probab=98.48 E-value=3.2e-07 Score=66.86 Aligned_cols=65 Identities=15% Similarity=0.114 Sum_probs=53.8
Q ss_pred cceEEeecCCCCHHHHHHHHHCC---CCCeeEEeec-hHHHHhCCCC-CCcEEEecCCCCC-CCC-CcEEEec
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHP---FICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKS-IPA-ADAIFMK 131 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p---~l~~~~~~D~-p~~~~~a~~~-~rv~~~~gd~~~~-~p~-~D~~~l~ 131 (135)
..+|||+|||+|.++..++++.+ ..+ ++++|+ +.+++.|+.+ +++.++.+|++.. .+. .|+|+..
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~-V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsN 121 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPRE-IVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISN 121 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcE-EEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEEC
Confidence 46999999999999999998754 566 999999 9999999876 6899999999764 332 4998763
No 77
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.48 E-value=7.5e-07 Score=65.36 Aligned_cols=73 Identities=22% Similarity=0.280 Sum_probs=56.8
Q ss_pred HhccCCCCCCcceEEeecCCCCHHHHHHHHHCCC------CCeeEEeec-hHHHHhCCCC---------CCcEEEecCCC
Q 032721 56 VLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPF------ICEGINFDL-PEVVAEAPSI---------PGVTHIGGDMF 119 (135)
Q Consensus 56 ~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~------l~~~~~~D~-p~~~~~a~~~---------~rv~~~~gd~~ 119 (135)
.+..+. -....++|||+||||-++-.|+++-+. -+ +++.|+ |+++..+++. .++.++.+|.
T Consensus 92 ~v~~L~-p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~-V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA- 168 (296)
T KOG1540|consen 92 FVSKLG-PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESK-VTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA- 168 (296)
T ss_pred hhhccC-CCCCCeEEEecCCcchhHHHHHHhhccccCCCCce-EEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc-
Confidence 344443 333479999999999999999998887 45 999999 9999887542 4599999998
Q ss_pred CCCC--C--CcEEEec
Q 032721 120 KSIP--A--ADAIFMK 131 (135)
Q Consensus 120 ~~~p--~--~D~~~l~ 131 (135)
+.+| . .|+|.+.
T Consensus 169 E~LpFdd~s~D~yTia 184 (296)
T KOG1540|consen 169 EDLPFDDDSFDAYTIA 184 (296)
T ss_pred ccCCCCCCcceeEEEe
Confidence 4454 3 4999875
No 78
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.46 E-value=1.2e-07 Score=61.23 Aligned_cols=63 Identities=29% Similarity=0.327 Sum_probs=51.4
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCC---CCC--CcEEEec
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS---IPA--ADAIFMK 131 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~---~p~--~D~~~l~ 131 (135)
.+|+|+|||+|.++..+++.. ..+ ++++|+ |..++.++.+ ++++++.+|+++. .+. .|++++.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~-~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AAR-VTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCE-EEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCe-EEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEEC
Confidence 489999999999999999998 667 999999 8888877642 6899999999754 233 3888764
No 79
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=4.3e-07 Score=63.87 Aligned_cols=63 Identities=19% Similarity=0.169 Sum_probs=50.6
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-----CCcEEEecCCCCCCCCCcEEEec
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIPAADAIFMK 131 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-----~rv~~~~gd~~~~~p~~D~~~l~ 131 (135)
++|+|+|||||.++++.+...|. + ++++|+ |++++.++++ .+++|+..|.-+--...|.++|.
T Consensus 47 ~~V~DlG~GTG~La~ga~~lGa~-~-V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimN 115 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALLGAS-R-VLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMN 115 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhcCCc-E-EEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEEC
Confidence 68999999999999999887665 5 899999 9999998876 57999999983322234777664
No 80
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.45 E-value=4.4e-07 Score=69.14 Aligned_cols=66 Identities=14% Similarity=0.116 Sum_probs=50.2
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCC-------CCCCcEEEecCCCCCCC--C-CcEEEecccC
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAP-------SIPGVTHIGGDMFKSIP--A-ADAIFMKVHH 134 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~-------~~~rv~~~~gd~~~~~p--~-~D~~~l~~vl 134 (135)
.++|+|||||+|.++..+++..+. + ++++|. +.++..++ ...++.++.+|+.+ +| . .|++++..+|
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~-~-V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~-lp~~~~FD~V~s~~vl 199 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAK-L-VVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQ-LPALKAFDTVFSMGVL 199 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC-E-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHH-CCCcCCcCEEEECChh
Confidence 479999999999999999998765 5 999998 65554321 12579999998843 43 3 3999987665
No 81
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.45 E-value=5.8e-07 Score=66.62 Aligned_cols=71 Identities=21% Similarity=0.245 Sum_probs=55.0
Q ss_pred CCCcceEEeecCCCCHHHHHHHHHC-CCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCC-CCC--CcEEEec
Q 032721 63 FKGVKRLVDVGGSAGDCLRMILQKH-PFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IPA--ADAIFMK 131 (135)
Q Consensus 63 ~~~~~~vvDvGgG~G~~~~~l~~~~-p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~-~p~--~D~~~l~ 131 (135)
.....+|||||||+|..+..+++.. +..+ ++++|+ +.+++.|+++ ++++++.+|+.+- +|. .|+++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~-v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGK-VIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCE-EEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEc
Confidence 4456899999999999888777764 5567 999999 8999988753 5899999998542 443 3999877
Q ss_pred ccC
Q 032721 132 VHH 134 (135)
Q Consensus 132 ~vl 134 (135)
.++
T Consensus 154 ~v~ 156 (272)
T PRK11873 154 CVI 156 (272)
T ss_pred Ccc
Confidence 654
No 82
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.45 E-value=5.1e-07 Score=63.82 Aligned_cols=66 Identities=21% Similarity=0.397 Sum_probs=51.4
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCCCCcEEEecCCCCC---CCC--CcEEEecccC
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS---IPA--ADAIFMKVHH 134 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~~rv~~~~gd~~~~---~p~--~D~~~l~~vl 134 (135)
..+|+|||||+|.++..+++. ...+ ++++|+ +.+++.++. .+++++.+|+.+. ++. .|++++.++|
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~-~~~~-~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l 85 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDE-KQVR-GYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTL 85 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhc-cCCc-EEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHh
Confidence 468999999999999888765 4567 899999 888887754 4678888888653 332 4999998765
No 83
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.44 E-value=6.2e-07 Score=71.39 Aligned_cols=79 Identities=19% Similarity=0.192 Sum_probs=59.7
Q ss_pred cHHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCC----CCCcEEEecCCCCC---CC
Q 032721 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPS----IPGVTHIGGDMFKS---IP 123 (135)
Q Consensus 52 ~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~----~~rv~~~~gd~~~~---~p 123 (135)
....+++.++ ..+..+|+|||||+|.++..+++... + ++++|. +.+++.++. .++++++.+|+.+. +|
T Consensus 25 ~~~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~--~-v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~ 100 (475)
T PLN02336 25 ERPEILSLLP-PYEGKSVLELGAGIGRFTGELAKKAG--Q-VIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNIS 100 (475)
T ss_pred hhhHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhCC--E-EEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCC
Confidence 3456666666 54557999999999999999998753 5 999999 888887643 25799999998642 44
Q ss_pred C--CcEEEecccC
Q 032721 124 A--ADAIFMKVHH 134 (135)
Q Consensus 124 ~--~D~~~l~~vl 134 (135)
. .|++++..++
T Consensus 101 ~~~fD~I~~~~~l 113 (475)
T PLN02336 101 DGSVDLIFSNWLL 113 (475)
T ss_pred CCCEEEEehhhhH
Confidence 3 3999887643
No 84
>PRK04266 fibrillarin; Provisional
Probab=98.42 E-value=2.3e-06 Score=62.24 Aligned_cols=69 Identities=14% Similarity=0.194 Sum_probs=53.3
Q ss_pred CCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHH----hCCCCCCcEEEecCCCCC-----CCC-CcEE
Q 032721 60 YDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVA----EAPSIPGVTHIGGDMFKS-----IPA-ADAI 128 (135)
Q Consensus 60 ~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~----~a~~~~rv~~~~gd~~~~-----~p~-~D~~ 128 (135)
++ ..+..+|+|+|||+|.++..+++..+.-+ ++++|+ +.+++ .+++..++.++.+|..++ ++. .|++
T Consensus 68 l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~-V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i 145 (226)
T PRK04266 68 FP-IKKGSKVLYLGAASGTTVSHVSDIVEEGV-VYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVI 145 (226)
T ss_pred CC-CCCCCEEEEEccCCCHHHHHHHHhcCCCe-EEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEE
Confidence 54 66668999999999999999999988656 999999 86666 344446799999998642 233 4888
Q ss_pred Ee
Q 032721 129 FM 130 (135)
Q Consensus 129 ~l 130 (135)
+.
T Consensus 146 ~~ 147 (226)
T PRK04266 146 YQ 147 (226)
T ss_pred EE
Confidence 74
No 85
>PRK14967 putative methyltransferase; Provisional
Probab=98.41 E-value=5.6e-07 Score=64.99 Aligned_cols=67 Identities=15% Similarity=0.092 Sum_probs=52.0
Q ss_pred CCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-----CCcEEEecCCCCCCCC--CcEEEec
Q 032721 63 FKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIPA--ADAIFMK 131 (135)
Q Consensus 63 ~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-----~rv~~~~gd~~~~~p~--~D~~~l~ 131 (135)
..+..+|+|+|||+|.++..+++. +..+ ++++|+ +.+++.++++ .+++++.+|+.+.++. .|++++.
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~-v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~n 108 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGS-VTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSN 108 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCe-EEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEEC
Confidence 444579999999999999998876 3346 999999 8888876653 3588889999776553 4998874
No 86
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.41 E-value=2.5e-07 Score=70.50 Aligned_cols=65 Identities=14% Similarity=-0.003 Sum_probs=51.0
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCC-CCC--CcEEEecccC
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IPA--ADAIFMKVHH 134 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~-~p~--~D~~~l~~vl 134 (135)
.+|||||||+|.++..+++ ++.+ ++++|. +++++.|+.. .+++++.+|+.+- .+. .|++++..+|
T Consensus 133 ~~ILDIGCG~G~~s~~La~--~g~~-V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLAR--MGAT-VTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CEEEEeeCCCCHHHHHHHH--cCCE-EEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 5899999999999998886 3567 999999 8999888642 3789999987331 222 4999987765
No 87
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.39 E-value=1.5e-06 Score=62.21 Aligned_cols=74 Identities=19% Similarity=0.223 Sum_probs=56.3
Q ss_pred HHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCCCCC---
Q 032721 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA--- 124 (135)
Q Consensus 55 ~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~~p~--- 124 (135)
.+++.++ ..+..+|+|||||+|.++..+++... + ++.+|. +.+++.++++ .+++++.+|.++..+.
T Consensus 69 ~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~-v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 144 (212)
T PRK00312 69 RMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--R-VFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAP 144 (212)
T ss_pred HHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--E-EEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCC
Confidence 4445554 55668999999999999987777653 5 999998 8888877642 4699999999776543
Q ss_pred CcEEEecc
Q 032721 125 ADAIFMKV 132 (135)
Q Consensus 125 ~D~~~l~~ 132 (135)
.|++++..
T Consensus 145 fD~I~~~~ 152 (212)
T PRK00312 145 FDRILVTA 152 (212)
T ss_pred cCEEEEcc
Confidence 49998764
No 88
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.39 E-value=6.5e-07 Score=63.56 Aligned_cols=71 Identities=13% Similarity=0.098 Sum_probs=54.8
Q ss_pred ccCCCCCCcceEEeecCCCCHHHHHHHHHC-CCCCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCCC----CC
Q 032721 58 DGYDGFKGVKRLVDVGGSAGDCLRMILQKH-PFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSI----PA 124 (135)
Q Consensus 58 ~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~-p~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~~----p~ 124 (135)
..++ .....+|+|+|||+|.++..+++.. +..+ ++++|+ |.+++.++++ ++++++.+|+.+.+ +.
T Consensus 34 ~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~-v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~ 111 (198)
T PRK00377 34 SKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGK-VYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEK 111 (198)
T ss_pred HHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCC
Confidence 3444 5566899999999999999998865 5567 999999 8898877542 57889999986532 23
Q ss_pred CcEEEe
Q 032721 125 ADAIFM 130 (135)
Q Consensus 125 ~D~~~l 130 (135)
.|++++
T Consensus 112 ~D~V~~ 117 (198)
T PRK00377 112 FDRIFI 117 (198)
T ss_pred CCEEEE
Confidence 599887
No 89
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.39 E-value=9.2e-07 Score=66.64 Aligned_cols=74 Identities=22% Similarity=0.371 Sum_probs=56.3
Q ss_pred HHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCC-------CCCcEEEecCCCCC-CC
Q 032721 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IP 123 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~-------~~rv~~~~gd~~~~-~p 123 (135)
...+++..+ ..+..+|+|||||+|.++..+++.. .+ ++++|+ +.+++.+++ .++++++.+|+.+. .+
T Consensus 25 ~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~--~~-V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~ 100 (294)
T PTZ00338 25 LDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLA--KK-VIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP 100 (294)
T ss_pred HHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhC--Cc-EEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc
Confidence 345666665 5566899999999999999999875 35 999999 888877653 25799999999765 44
Q ss_pred CCcEEEe
Q 032721 124 AADAIFM 130 (135)
Q Consensus 124 ~~D~~~l 130 (135)
..|+++.
T Consensus 101 ~~d~Vva 107 (294)
T PTZ00338 101 YFDVCVA 107 (294)
T ss_pred ccCEEEe
Confidence 4576653
No 90
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.39 E-value=9.4e-07 Score=65.95 Aligned_cols=73 Identities=19% Similarity=0.135 Sum_probs=57.9
Q ss_pred HHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCCCCC
Q 032721 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA 124 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~~p~ 124 (135)
.+.+++.+. +.+..+|||||||.|.+++..+++| +.+ ++++++ ++..+.+++. .++++...|+-+ +++
T Consensus 61 ~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~-V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd-~~e 136 (283)
T COG2230 61 LDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVT-VVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD-FEE 136 (283)
T ss_pred HHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCE-EEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc-ccc
Confidence 456778887 8888999999999999999999999 888 999999 7777776542 478888888733 333
Q ss_pred -CcEEE
Q 032721 125 -ADAIF 129 (135)
Q Consensus 125 -~D~~~ 129 (135)
-|-++
T Consensus 137 ~fDrIv 142 (283)
T COG2230 137 PFDRIV 142 (283)
T ss_pred ccceee
Confidence 35554
No 91
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.36 E-value=4.1e-07 Score=65.20 Aligned_cols=79 Identities=20% Similarity=0.327 Sum_probs=50.8
Q ss_pred HHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCC---------------CCCcEEEecCC
Q 032721 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPS---------------IPGVTHIGGDM 118 (135)
Q Consensus 55 ~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~---------------~~rv~~~~gd~ 118 (135)
.+++.+. ..+...++|||||.|......+..++--+ ++++++ |...+.|.. ..++++..|||
T Consensus 33 ~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~-~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 33 KILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKK-SVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SE-EEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcE-EEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 4555565 66678999999999999998888776555 999998 665554432 15689999999
Q ss_pred CCC------CCCCcEEEecccCC
Q 032721 119 FKS------IPAADAIFMKVHHF 135 (135)
Q Consensus 119 ~~~------~p~~D~~~l~~vl~ 135 (135)
++. +..||++++.+.+|
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~F 133 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTCF 133 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TTT
T ss_pred cccHhHhhhhcCCCEEEEecccc
Confidence 875 24589999998876
No 92
>PLN02672 methionine S-methyltransferase
Probab=98.36 E-value=4.8e-07 Score=77.86 Aligned_cols=63 Identities=21% Similarity=0.115 Sum_probs=53.5
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC----------------------CCcEEEecCCCCCCC
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI----------------------PGVTHIGGDMFKSIP 123 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~----------------------~rv~~~~gd~~~~~p 123 (135)
.+|+|+|||+|.++..+++++|+.+ ++++|+ |.+++.|+.+ +|++++.+|+++.++
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~-v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSK-VYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 5899999999999999999999988 999999 9899887432 379999999998764
Q ss_pred C----CcEEEe
Q 032721 124 A----ADAIFM 130 (135)
Q Consensus 124 ~----~D~~~l 130 (135)
. .|+++.
T Consensus 199 ~~~~~fDlIVS 209 (1082)
T PLN02672 199 DNNIELDRIVG 209 (1082)
T ss_pred ccCCceEEEEE
Confidence 2 488764
No 93
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.35 E-value=7.7e-07 Score=67.64 Aligned_cols=65 Identities=15% Similarity=0.015 Sum_probs=50.7
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-----------CCcEEEecCCCCCCCC-CcEEEecc
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-----------PGVTHIGGDMFKSIPA-ADAIFMKV 132 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-----------~rv~~~~gd~~~~~p~-~D~~~l~~ 132 (135)
..+|+|||||+|.++..+++. ..+ ++++|+ +.+++.++++ .++++..+|+.+ ++. .|++++..
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~--g~~-V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~-l~~~fD~Vv~~~ 220 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALE--GAI-VSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES-LSGKYDTVTCLD 220 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh-cCCCcCEEEEcC
Confidence 469999999999999999986 457 999999 8898877643 257888888743 443 49998776
Q ss_pred cC
Q 032721 133 HH 134 (135)
Q Consensus 133 vl 134 (135)
+|
T Consensus 221 vL 222 (315)
T PLN02585 221 VL 222 (315)
T ss_pred EE
Confidence 54
No 94
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.35 E-value=1.4e-06 Score=67.89 Aligned_cols=74 Identities=16% Similarity=0.065 Sum_probs=56.0
Q ss_pred HHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC---CCcEEEecCCCCCCCC-CcEEE
Q 032721 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI---PGVTHIGGDMFKSIPA-ADAIF 129 (135)
Q Consensus 55 ~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~---~rv~~~~gd~~~~~p~-~D~~~ 129 (135)
.+++.++ ..+..+|||||||+|.++..+++.+ +.+ ++++|+ +.+++.+++. ..+++...|+.+ ++. .|+++
T Consensus 158 ~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~-V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~-l~~~fD~Iv 233 (383)
T PRK11705 158 LICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVS-VVGVTISAEQQKLAQERCAGLPVEIRLQDYRD-LNGQFDRIV 233 (383)
T ss_pred HHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHHHhccCeEEEEECchhh-cCCCCCEEE
Confidence 4555565 6666899999999999999998876 567 999999 8899887653 357888888743 343 48887
Q ss_pred ecc
Q 032721 130 MKV 132 (135)
Q Consensus 130 l~~ 132 (135)
...
T Consensus 234 s~~ 236 (383)
T PRK11705 234 SVG 236 (383)
T ss_pred EeC
Confidence 543
No 95
>PRK14968 putative methyltransferase; Provisional
Probab=98.34 E-value=1.3e-06 Score=60.81 Aligned_cols=65 Identities=23% Similarity=0.288 Sum_probs=52.0
Q ss_pred CCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-------CC-cEEEecCCCCCCCC--CcEEEec
Q 032721 64 KGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-------PG-VTHIGGDMFKSIPA--ADAIFMK 131 (135)
Q Consensus 64 ~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-------~r-v~~~~gd~~~~~p~--~D~~~l~ 131 (135)
.+..+++|+|||+|.++..++++ ..+ ++++|+ |.+++.++++ .+ +.++.+|+.+.++. .|++++.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n 97 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKK-VVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFN 97 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cce-EEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEEC
Confidence 34468999999999999999988 567 999999 8888877542 22 88999999887654 4998864
No 96
>PLN02366 spermidine synthase
Probab=98.33 E-value=1.1e-06 Score=66.66 Aligned_cols=67 Identities=25% Similarity=0.333 Sum_probs=52.1
Q ss_pred CCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC----------CCcEEEecCCCC---CCCC--CcE
Q 032721 64 KGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI----------PGVTHIGGDMFK---SIPA--ADA 127 (135)
Q Consensus 64 ~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~----------~rv~~~~gd~~~---~~p~--~D~ 127 (135)
++.++|++||||.|.++.++++. |...+++++|+ +.+++.+++. +|++++.+|.++ ..|. -|+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 45689999999999999999864 66544999999 7788887652 689999999753 3433 499
Q ss_pred EEec
Q 032721 128 IFMK 131 (135)
Q Consensus 128 ~~l~ 131 (135)
+++-
T Consensus 169 Ii~D 172 (308)
T PLN02366 169 IIVD 172 (308)
T ss_pred EEEc
Confidence 9873
No 97
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.32 E-value=8.6e-07 Score=66.14 Aligned_cols=75 Identities=17% Similarity=0.097 Sum_probs=50.9
Q ss_pred HHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCC-------CCCcEEEecCCCCCCCC
Q 032721 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA 124 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~-------~~rv~~~~gd~~~~~p~ 124 (135)
...+++..+ ..+..+|||||||.|.++..+++++ +++ ++++.+ +.-.+.+++ .+++++...|+.+ ++.
T Consensus 51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~-v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~-~~~ 126 (273)
T PF02353_consen 51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCH-VTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD-LPG 126 (273)
T ss_dssp HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---E-EEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc-cCC
Confidence 456777887 8888999999999999999999999 788 999998 666665532 1689999999854 444
Q ss_pred -CcEEEec
Q 032721 125 -ADAIFMK 131 (135)
Q Consensus 125 -~D~~~l~ 131 (135)
-|.++.-
T Consensus 127 ~fD~IvSi 134 (273)
T PF02353_consen 127 KFDRIVSI 134 (273)
T ss_dssp S-SEEEEE
T ss_pred CCCEEEEE
Confidence 4877643
No 98
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.32 E-value=1.9e-06 Score=65.64 Aligned_cols=75 Identities=16% Similarity=0.250 Sum_probs=57.7
Q ss_pred HHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCC-CCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCCCCC--
Q 032721 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPF-ICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA-- 124 (135)
Q Consensus 55 ~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~-l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~~p~-- 124 (135)
.+++..+ ..+..+|+|||||+|.++..+++..+. .+ ++++|. |.+++.|+++ +++.++.+|..+..+.
T Consensus 71 ~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~-VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~ 148 (322)
T PRK13943 71 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGL-VVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFA 148 (322)
T ss_pred HHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccC
Confidence 4455555 556679999999999999999998875 45 899999 8888877642 5799999998665432
Q ss_pred -CcEEEec
Q 032721 125 -ADAIFMK 131 (135)
Q Consensus 125 -~D~~~l~ 131 (135)
.|++++.
T Consensus 149 ~fD~Ii~~ 156 (322)
T PRK13943 149 PYDVIFVT 156 (322)
T ss_pred CccEEEEC
Confidence 4998874
No 99
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.31 E-value=1.2e-06 Score=64.97 Aligned_cols=66 Identities=17% Similarity=0.213 Sum_probs=50.8
Q ss_pred CCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-------CCcEEE----ecCCCCCCC--CC--c
Q 032721 63 FKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-------PGVTHI----GGDMFKSIP--AA--D 126 (135)
Q Consensus 63 ~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-------~rv~~~----~gd~~~~~p--~~--D 126 (135)
+.....++|+|||+|+++..++..-|+.+ ++.+|. +.++..|.++ .++..+ ++|.+.+.| .+ |
T Consensus 146 ~~~~~~ildlgtGSGaIslsll~~L~~~~-v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~d 224 (328)
T KOG2904|consen 146 HSKHTHILDLGTGSGAISLSLLHGLPQCT-VTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKID 224 (328)
T ss_pred hcccceEEEecCCccHHHHHHHhcCCCce-EEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCcee
Confidence 33446899999999999999999999988 999999 7788777654 677776 556666533 22 6
Q ss_pred EEE
Q 032721 127 AIF 129 (135)
Q Consensus 127 ~~~ 129 (135)
+++
T Consensus 225 llv 227 (328)
T KOG2904|consen 225 LLV 227 (328)
T ss_pred EEe
Confidence 654
No 100
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.28 E-value=1.9e-06 Score=65.55 Aligned_cols=67 Identities=13% Similarity=0.079 Sum_probs=50.1
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCC-------CCCCcEEEecCCCCCCC---CCcEEEeccc
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAP-------SIPGVTHIGGDMFKSIP---AADAIFMKVH 133 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~-------~~~rv~~~~gd~~~~~p---~~D~~~l~~v 133 (135)
+.++|+|||||+|.++..++...+. . ++++|. +.++..++ ...++.+..+|+ +.+| ..|++++..+
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~-~-v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~i-e~lp~~~~FD~V~s~gv 197 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAK-S-LVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGI-EQLHELYAFDTVFSMGV 197 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-E-EEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCH-HHCCCCCCcCEEEEcch
Confidence 3479999999999999999988765 6 999998 66665432 125788888876 3344 2499998876
Q ss_pred C
Q 032721 134 H 134 (135)
Q Consensus 134 l 134 (135)
|
T Consensus 198 L 198 (314)
T TIGR00452 198 L 198 (314)
T ss_pred h
Confidence 5
No 101
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.25 E-value=4.7e-07 Score=66.57 Aligned_cols=65 Identities=15% Similarity=0.052 Sum_probs=50.8
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC--------C----CcEEEecCCCCCCCCCcEEEeccc
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI--------P----GVTHIGGDMFKSIPAADAIFMKVH 133 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~--------~----rv~~~~gd~~~~~p~~D~~~l~~v 133 (135)
.+|||||||+|.++..|++.. .. ++++|. +.+++.|+++ . |+++...|.-...+..|+|+..-|
T Consensus 91 ~~ilDvGCGgGLLSepLArlg--a~-V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG--AQ-VTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred ceEEEeccCccccchhhHhhC--Ce-eEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 579999999999999999986 45 999999 8999998753 2 467776666333555799987755
Q ss_pred C
Q 032721 134 H 134 (135)
Q Consensus 134 l 134 (135)
|
T Consensus 168 l 168 (282)
T KOG1270|consen 168 L 168 (282)
T ss_pred H
Confidence 4
No 102
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.25 E-value=1.9e-06 Score=68.28 Aligned_cols=72 Identities=14% Similarity=0.142 Sum_probs=54.5
Q ss_pred HHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCCC-----
Q 032721 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSI----- 122 (135)
Q Consensus 55 ~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~~----- 122 (135)
.+++.++ ..+..+|+|+|||+|.++..+++.. .+ ++++|. +.+++.|+++ ++++++.+|+.+.+
T Consensus 288 ~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~-V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~ 363 (443)
T PRK13168 288 RALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AE-VVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPW 363 (443)
T ss_pred HHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CE-EEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhh
Confidence 3444443 3445799999999999999999875 45 999999 8999988753 57999999986532
Q ss_pred C-C-CcEEEe
Q 032721 123 P-A-ADAIFM 130 (135)
Q Consensus 123 p-~-~D~~~l 130 (135)
+ . .|++++
T Consensus 364 ~~~~fD~Vi~ 373 (443)
T PRK13168 364 ALGGFDKVLL 373 (443)
T ss_pred hcCCCCEEEE
Confidence 1 2 488876
No 103
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.24 E-value=1.7e-06 Score=65.38 Aligned_cols=64 Identities=17% Similarity=0.264 Sum_probs=49.4
Q ss_pred HHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCC-CCCeeEEeec-hHHHHhCCCC-----C--CcEEEecCCCCC
Q 032721 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHP-FICEGINFDL-PEVVAEAPSI-----P--GVTHIGGDMFKS 121 (135)
Q Consensus 54 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p-~l~~~~~~D~-p~~~~~a~~~-----~--rv~~~~gd~~~~ 121 (135)
..+++.++ +..+|+|+|||+|..+..|+++.+ ..+ ++.+|+ +++++.+.+. + +|.++.+|+.+.
T Consensus 55 ~~ia~~~~---~~~~iLELGcGtG~~t~~Ll~~l~~~~~-~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~ 127 (301)
T TIGR03438 55 DEIAAATG---AGCELVELGSGSSRKTRLLLDALRQPAR-YVPIDISADALKESAAALAADYPQLEVHGICADFTQP 127 (301)
T ss_pred HHHHHhhC---CCCeEEecCCCcchhHHHHHHhhccCCe-EEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch
Confidence 34544443 336899999999999999999987 577 999999 8888777542 3 467789999864
No 104
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.23 E-value=2.6e-06 Score=60.39 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=53.2
Q ss_pred HHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCC-----CCCcEEEecCCCCC-CCCC-
Q 032721 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPAA- 125 (135)
Q Consensus 54 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~-----~~rv~~~~gd~~~~-~p~~- 125 (135)
+.+++.++ .-+..++||+|||.|.-+.-|+++ +.. ++.+|. +..++.+.+ .-.|+....|+.+. +|..
T Consensus 20 s~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~--G~~-VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~y 95 (192)
T PF03848_consen 20 SEVLEAVP-LLKPGKALDLGCGEGRNALYLASQ--GFD-VTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEY 95 (192)
T ss_dssp HHHHHHCT-TS-SSEEEEES-TTSHHHHHHHHT--T-E-EEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTE
T ss_pred HHHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHC--CCe-EEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCc
Confidence 44666676 555689999999999999999998 667 999999 777766542 23488889998665 5554
Q ss_pred cEEEeccc
Q 032721 126 DAIFMKVH 133 (135)
Q Consensus 126 D~~~l~~v 133 (135)
|+++..-|
T Consensus 96 D~I~st~v 103 (192)
T PF03848_consen 96 DFIVSTVV 103 (192)
T ss_dssp EEEEEESS
T ss_pred CEEEEEEE
Confidence 98875433
No 105
>PRK00811 spermidine synthase; Provisional
Probab=98.23 E-value=1.4e-06 Score=65.24 Aligned_cols=67 Identities=25% Similarity=0.324 Sum_probs=52.5
Q ss_pred CCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCC-----------CCCcEEEecCCCCCCC---C-CcE
Q 032721 64 KGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPS-----------IPGVTHIGGDMFKSIP---A-ADA 127 (135)
Q Consensus 64 ~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~-----------~~rv~~~~gd~~~~~p---~-~D~ 127 (135)
++.++|++||||+|.++.++++..+..+ ++++|+ |.+++.+++ .+|++++.+|..+-++ . -|+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~-V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEK-ITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCE-EEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 3457999999999999999997534446 999999 999988864 2689999999865432 2 399
Q ss_pred EEec
Q 032721 128 IFMK 131 (135)
Q Consensus 128 ~~l~ 131 (135)
+++.
T Consensus 154 Ii~D 157 (283)
T PRK00811 154 IIVD 157 (283)
T ss_pred EEEC
Confidence 9874
No 106
>PRK04148 hypothetical protein; Provisional
Probab=98.21 E-value=6e-06 Score=55.30 Aligned_cols=72 Identities=18% Similarity=0.229 Sum_probs=53.1
Q ss_pred HHhccCCCCCCcceEEeecCCCCH-HHHHHHHHCCCCCeeEEeec-hHHHHhCCCCCCcEEEecCCCCCCC----CCcEE
Q 032721 55 SVLDGYDGFKGVKRLVDVGGSAGD-CLRMILQKHPFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIP----AADAI 128 (135)
Q Consensus 55 ~~~~~~~~~~~~~~vvDvGgG~G~-~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~~rv~~~~gd~~~~~p----~~D~~ 128 (135)
.+.+.++ -.+..+++|||||+|. ++..|.+. +.. ++++|. |..++.++.. .++++.+|.|++-+ .+|++
T Consensus 7 ~l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~--G~~-ViaIDi~~~aV~~a~~~-~~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 7 FIAENYE-KGKNKKIVELGIGFYFKVAKKLKES--GFD-VIVIDINEKAVEKAKKL-GLNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred HHHHhcc-cccCCEEEEEEecCCHHHHHHHHHC--CCE-EEEEECCHHHHHHHHHh-CCeEEECcCCCCCHHHHhcCCEE
Confidence 3455554 3334789999999996 88888765 456 999999 8888877653 57899999999833 36887
Q ss_pred Eec
Q 032721 129 FMK 131 (135)
Q Consensus 129 ~l~ 131 (135)
+-.
T Consensus 82 ysi 84 (134)
T PRK04148 82 YSI 84 (134)
T ss_pred EEe
Confidence 653
No 107
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.21 E-value=2.4e-06 Score=59.94 Aligned_cols=65 Identities=18% Similarity=0.191 Sum_probs=50.6
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCC--CCC-CcEEEec
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS--IPA-ADAIFMK 131 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~--~p~-~D~~~l~ 131 (135)
..+|||+|||.|+++..|+++--.-+ .+++|. +.+++.|+.. ..|+|...|.+++ .+. -|+++=+
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~-L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDK 143 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSK-LTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDK 143 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCC-ccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeec
Confidence 34999999999999999999865556 889998 8888877532 3499999999986 443 3776533
No 108
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.20 E-value=1e-05 Score=58.12 Aligned_cols=71 Identities=18% Similarity=0.235 Sum_probs=51.0
Q ss_pred HhccCCCCCCcceEEeecCCCCHHHHHHHHHCC-CCCeeEEeechHHHHhCCCCCCcEEEecCCCCC---------CCC-
Q 032721 56 VLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHP-FICEGINFDLPEVVAEAPSIPGVTHIGGDMFKS---------IPA- 124 (135)
Q Consensus 56 ~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p-~l~~~~~~D~p~~~~~a~~~~rv~~~~gd~~~~---------~p~- 124 (135)
+.+.+..+.+..+|+|||||+|.++..+++..+ ..+ ++++|+.++ ...++++++.+|+.+. .+.
T Consensus 42 ~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~-V~aVDi~~~----~~~~~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 42 IQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGR-VIACDILPM----DPIVGVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred HHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCce-EEEEecccc----cCCCCcEEEecCCCChHHHHHHHHHhCCC
Confidence 344443234557999999999999999999874 457 999999443 2235799999999763 222
Q ss_pred -CcEEEec
Q 032721 125 -ADAIFMK 131 (135)
Q Consensus 125 -~D~~~l~ 131 (135)
.|+++..
T Consensus 117 ~~D~V~S~ 124 (209)
T PRK11188 117 KVQVVMSD 124 (209)
T ss_pred CCCEEecC
Confidence 4888853
No 109
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.20 E-value=1.8e-06 Score=62.11 Aligned_cols=77 Identities=21% Similarity=0.288 Sum_probs=57.3
Q ss_pred HHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCC-CCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCCCCC
Q 032721 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPF-ICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA 124 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~-l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~~p~ 124 (135)
...+++.++ ..+..+|+|||+|+|.++..+++.... -+ ++.+|. |..++.|+++ .+|+++.+|-....|.
T Consensus 61 ~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~-Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~ 138 (209)
T PF01135_consen 61 VARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGR-VVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE 138 (209)
T ss_dssp HHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEE-EEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG
T ss_pred HHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccce-EEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc
Confidence 445677776 777789999999999999999887543 35 889998 8888888764 5899999998777664
Q ss_pred -C--cEEEec
Q 032721 125 -A--DAIFMK 131 (135)
Q Consensus 125 -~--D~~~l~ 131 (135)
+ |.+++.
T Consensus 139 ~apfD~I~v~ 148 (209)
T PF01135_consen 139 EAPFDRIIVT 148 (209)
T ss_dssp G-SEEEEEES
T ss_pred CCCcCEEEEe
Confidence 3 988875
No 110
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.19 E-value=1.5e-06 Score=62.04 Aligned_cols=64 Identities=9% Similarity=0.105 Sum_probs=49.7
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCCCC----CCcEEEec
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP----AADAIFMK 131 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~~p----~~D~~~l~ 131 (135)
..+++|+|||+|.++.+.+.+.. .+ ++.+|. +.+++.++++ .+++++.+|+++.++ ..|++++.
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a-~~-V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~D 128 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYA-AG-ATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVD 128 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCC-CE-EEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEEC
Confidence 36899999999999997666553 46 999999 8888877653 579999999876542 24888763
No 111
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.19 E-value=4.1e-06 Score=62.86 Aligned_cols=64 Identities=22% Similarity=0.145 Sum_probs=46.7
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCCCCC-CcEEEec
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA-ADAIFMK 131 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~~p~-~D~~~l~ 131 (135)
..+|+|+|||+|.++..+++. +..+ ++++|+ |.+++.++++ .++.+..+|.....+. .|+++..
T Consensus 160 g~~VLDvGcGsG~lai~aa~~-g~~~-V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan 232 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKL-GAAK-VVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVAN 232 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHc-CCCe-EEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEe
Confidence 479999999999999888764 4446 999999 8888888753 3566666664322333 4998764
No 112
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.17 E-value=6e-06 Score=50.68 Aligned_cols=65 Identities=20% Similarity=0.194 Sum_probs=50.7
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCC------CCCCcEEEecCCCCCC--C--CCcEEEecccC
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAP------SIPGVTHIGGDMFKSI--P--AADAIFMKVHH 134 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~------~~~rv~~~~gd~~~~~--p--~~D~~~l~~vl 134 (135)
+++|+|||.|.++..+++ .+..+ ++++|+ +..+..++ ...+++++.+|+.+.. + ..|++++...+
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGAR-VTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCE-EEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccce
Confidence 589999999999999988 66677 999999 66766554 1267999999998763 2 25999887654
No 113
>PRK01581 speE spermidine synthase; Validated
Probab=98.16 E-value=2.2e-06 Score=66.19 Aligned_cols=67 Identities=22% Similarity=0.212 Sum_probs=52.7
Q ss_pred CCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCC-------------CCCcEEEecCCCCCCC---C-C
Q 032721 64 KGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPS-------------IPGVTHIGGDMFKSIP---A-A 125 (135)
Q Consensus 64 ~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~-------------~~rv~~~~gd~~~~~p---~-~ 125 (135)
.+.++|++||||+|..+.++++..+..+ ++++|+ |.+++.|+. .+|++++.+|..+-++ . -
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~-It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLH-VDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCe-EEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 3457999999999999999987544456 999999 999998874 2689999999876432 2 3
Q ss_pred cEEEec
Q 032721 126 DAIFMK 131 (135)
Q Consensus 126 D~~~l~ 131 (135)
|++++-
T Consensus 228 DVIIvD 233 (374)
T PRK01581 228 DVIIID 233 (374)
T ss_pred cEEEEc
Confidence 998875
No 114
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.16 E-value=6.9e-06 Score=55.47 Aligned_cols=64 Identities=23% Similarity=0.306 Sum_probs=43.6
Q ss_pred CCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCCCCcEEEecCCCCC-CCC--CcEEEecccC
Q 032721 64 KGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPA--ADAIFMKVHH 134 (135)
Q Consensus 64 ~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~~rv~~~~gd~~~~-~p~--~D~~~l~~vl 134 (135)
....+|+|||||+|.++..+++... + ++++|+ +.+++. ..+.....+.-+. .|. .|++++.++|
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~--~-~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF--E-VTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVL 88 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS--E-EEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSG
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC--E-EEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHH
Confidence 4458999999999999999966644 6 999999 888877 2222222111121 222 4999988775
No 115
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.15 E-value=1.4e-05 Score=56.19 Aligned_cols=70 Identities=19% Similarity=0.264 Sum_probs=50.2
Q ss_pred HhccCCCCCCcceEEeecCCCCHHHHHHHHHC-CCCCeeEEeechHHHHhCCCCCCcEEEecCCCCC---------CCC-
Q 032721 56 VLDGYDGFKGVKRLVDVGGSAGDCLRMILQKH-PFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKS---------IPA- 124 (135)
Q Consensus 56 ~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~-p~l~~~~~~D~p~~~~~a~~~~rv~~~~gd~~~~---------~p~- 124 (135)
+.+.+....+..+|+|+|||+|.++..+++++ +..+ ++++|+.+.. ..++++++.+|+.+. .+.
T Consensus 23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~-v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGR-VIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCce-EEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 33334334556899999999999999999887 5567 9999994322 235788888898652 232
Q ss_pred -CcEEEe
Q 032721 125 -ADAIFM 130 (135)
Q Consensus 125 -~D~~~l 130 (135)
.|+++.
T Consensus 98 ~~D~V~~ 104 (188)
T TIGR00438 98 KVDVVMS 104 (188)
T ss_pred CccEEEc
Confidence 498886
No 116
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.14 E-value=2.3e-06 Score=64.98 Aligned_cols=63 Identities=13% Similarity=0.044 Sum_probs=50.0
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCCCC----CCcEEEec
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP----AADAIFMK 131 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~~p----~~D~~~l~ 131 (135)
..+|+|+|||+|.++..+++. ..+ ++++|. +.+++.|+++ ++++++.+|+.+..+ ..|++++.
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~--~~~-V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATP--GMQ-LTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCE-EEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 378999999999999999984 356 999999 9999888653 579999999855321 24888763
No 117
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.12 E-value=1.8e-05 Score=57.01 Aligned_cols=65 Identities=14% Similarity=0.087 Sum_probs=49.5
Q ss_pred CCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCC------------------CCCcEEEecCCCCCCC-
Q 032721 64 KGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPS------------------IPGVTHIGGDMFKSIP- 123 (135)
Q Consensus 64 ~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~------------------~~rv~~~~gd~~~~~p- 123 (135)
....+++|+|||.|.-+..++++ ... ++++|+ |.+++.+.+ ..+|+++.+|+++.-+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~-V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHR-VLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCe-EEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 34479999999999999999985 667 999999 888886411 2468999999987532
Q ss_pred ---CCcEEEec
Q 032721 124 ---AADAIFMK 131 (135)
Q Consensus 124 ---~~D~~~l~ 131 (135)
.-|+++-+
T Consensus 110 ~~~~fD~i~D~ 120 (213)
T TIGR03840 110 DLGPVDAVYDR 120 (213)
T ss_pred cCCCcCEEEec
Confidence 23777644
No 118
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=1.2e-05 Score=57.61 Aligned_cols=75 Identities=21% Similarity=0.269 Sum_probs=61.1
Q ss_pred HHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCCCCC-
Q 032721 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA- 124 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~~p~- 124 (135)
...+++.++ .++..+|++||||+|..+.-+++--. + ++.+|+ ++..+.|+++ .+|.++.||-...+|+
T Consensus 61 vA~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~-V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 61 VARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--R-VVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--e-EEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence 345667776 77789999999999999988888766 5 899998 8888888764 6799999999888775
Q ss_pred C--cEEEec
Q 032721 125 A--DAIFMK 131 (135)
Q Consensus 125 ~--D~~~l~ 131 (135)
+ |.|+..
T Consensus 137 aPyD~I~Vt 145 (209)
T COG2518 137 APYDRIIVT 145 (209)
T ss_pred CCcCEEEEe
Confidence 4 988764
No 119
>PRK03612 spermidine synthase; Provisional
Probab=98.09 E-value=6.3e-06 Score=66.64 Aligned_cols=66 Identities=29% Similarity=0.400 Sum_probs=53.4
Q ss_pred CCcceEEeecCCCCHHHHHHHHHCCC-CCeeEEeec-hHHHHhCCCC-------------CCcEEEecCCCCC---CCC-
Q 032721 64 KGVKRLVDVGGSAGDCLRMILQKHPF-ICEGINFDL-PEVVAEAPSI-------------PGVTHIGGDMFKS---IPA- 124 (135)
Q Consensus 64 ~~~~~vvDvGgG~G~~~~~l~~~~p~-l~~~~~~D~-p~~~~~a~~~-------------~rv~~~~gd~~~~---~p~- 124 (135)
++.++|+|||||+|..+.++++ +|. .+ ++.+|+ |++++.++++ +|++++.+|.++. .+.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~-v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~ 373 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQ-VTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEK 373 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCe-EEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCC
Confidence 3457999999999999999997 666 56 999999 9999998761 5899999998753 233
Q ss_pred CcEEEec
Q 032721 125 ADAIFMK 131 (135)
Q Consensus 125 ~D~~~l~ 131 (135)
.|++++.
T Consensus 374 fDvIi~D 380 (521)
T PRK03612 374 FDVIIVD 380 (521)
T ss_pred CCEEEEe
Confidence 4999874
No 120
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.07 E-value=5.1e-06 Score=59.09 Aligned_cols=53 Identities=23% Similarity=0.378 Sum_probs=43.7
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCC------CCCcEEEecCCCC
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPS------IPGVTHIGGDMFK 120 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~------~~rv~~~~gd~~~ 120 (135)
..+||||||.|.++..+++++|+.. ++++|+ ...+..+.. ..++.++.+|...
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n-~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~ 78 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDIN-FIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARE 78 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSE-EEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTT
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCC-EEEEecchHHHHHHHHHHHhhcccceEEEEccHHH
Confidence 4899999999999999999999999 999999 666665532 3789999999865
No 121
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.06 E-value=9.5e-06 Score=61.18 Aligned_cols=66 Identities=24% Similarity=0.212 Sum_probs=54.8
Q ss_pred HHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCC-CCCeeEEeec-hHHHHhCCCC----CCcEEEecCCCC
Q 032721 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHP-FICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFK 120 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p-~l~~~~~~D~-p~~~~~a~~~----~rv~~~~gd~~~ 120 (135)
..++++.+. ..+...++|.+||.|..+..+++..| +.+ ++++|. |.+++.+++. .|++++.+||-+
T Consensus 8 l~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~-VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~ 79 (296)
T PRK00050 8 LDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGR-LIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSN 79 (296)
T ss_pred HHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCE-EEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHH
Confidence 456777775 45557999999999999999999997 678 999999 9999988653 489999999853
No 122
>PTZ00146 fibrillarin; Provisional
Probab=98.06 E-value=3.1e-05 Score=58.22 Aligned_cols=78 Identities=15% Similarity=0.199 Sum_probs=56.2
Q ss_pred HHHHhccCC--CCCCcceEEeecCCCCHHHHHHHHHCC-CCCeeEEeec-hH----HHHhCCCCCCcEEEecCCCCCC--
Q 032721 53 MTSVLDGYD--GFKGVKRLVDVGGSAGDCLRMILQKHP-FICEGINFDL-PE----VVAEAPSIPGVTHIGGDMFKSI-- 122 (135)
Q Consensus 53 ~~~~~~~~~--~~~~~~~vvDvGgG~G~~~~~l~~~~p-~l~~~~~~D~-p~----~~~~a~~~~rv~~~~gd~~~~~-- 122 (135)
+..|+..++ .+.+..+|||+|||+|.++..+++... .-+ ++.+|+ +. +++.++..++|.++.+|...+.
T Consensus 118 aa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~-VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y 196 (293)
T PTZ00146 118 AAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGV-VYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKY 196 (293)
T ss_pred HHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCE-EEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhh
Confidence 334544443 255567999999999999999999874 346 999998 54 5666666678999999986531
Q ss_pred ----CCCcEEEec
Q 032721 123 ----PAADAIFMK 131 (135)
Q Consensus 123 ----p~~D~~~l~ 131 (135)
+..|++++.
T Consensus 197 ~~~~~~vDvV~~D 209 (293)
T PTZ00146 197 RMLVPMVDVIFAD 209 (293)
T ss_pred hcccCCCCEEEEe
Confidence 224998764
No 123
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.05 E-value=6.6e-06 Score=60.50 Aligned_cols=42 Identities=21% Similarity=0.173 Sum_probs=34.6
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI 108 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~ 108 (135)
+..+|+|+|||+|.++..+++..+. + ++++|+ |.+++.|+++
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~-~-v~giDis~~~l~~A~~n 161 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAK-K-VLAVDIDPQAVEAAREN 161 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCC-e-EEEEECCHHHHHHHHHH
Confidence 4579999999999999887775443 6 999999 8899888754
No 124
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.04 E-value=1.1e-05 Score=63.96 Aligned_cols=73 Identities=16% Similarity=0.104 Sum_probs=55.8
Q ss_pred HhccCCCCCCcceEEeecCCCCHHHHHHHHHC-CCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCC---CCC
Q 032721 56 VLDGYDGFKGVKRLVDVGGSAGDCLRMILQKH-PFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS---IPA 124 (135)
Q Consensus 56 ~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~-p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~---~p~ 124 (135)
+...++ ..+..+|+|+|||+|..+..+++.. +..+ ++++|+ +.+++.++++ .+++++.+|+.+. ++.
T Consensus 242 v~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~-v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~ 319 (444)
T PRK14902 242 VAPALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGK-VVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAE 319 (444)
T ss_pred HHHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcc
Confidence 333444 4555799999999999999999986 5667 999999 8888877643 4589999998653 333
Q ss_pred -CcEEEe
Q 032721 125 -ADAIFM 130 (135)
Q Consensus 125 -~D~~~l 130 (135)
.|+|++
T Consensus 320 ~fD~Vl~ 326 (444)
T PRK14902 320 KFDKILV 326 (444)
T ss_pred cCCEEEE
Confidence 499886
No 125
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=7.2e-06 Score=61.72 Aligned_cols=50 Identities=20% Similarity=0.147 Sum_probs=40.0
Q ss_pred HHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC
Q 032721 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI 108 (135)
Q Consensus 55 ~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~ 108 (135)
.+++.+. . +..+++|+|||+|.++++.++-... + ++++|+ |.+++.|+.+
T Consensus 154 ~~Le~~~-~-~g~~vlDvGcGSGILaIAa~kLGA~-~-v~g~DiDp~AV~aa~eN 204 (300)
T COG2264 154 EALEKLL-K-KGKTVLDVGCGSGILAIAAAKLGAK-K-VVGVDIDPQAVEAAREN 204 (300)
T ss_pred HHHHHhh-c-CCCEEEEecCChhHHHHHHHHcCCc-e-EEEecCCHHHHHHHHHH
Confidence 3455554 3 5589999999999999999986443 5 999999 9899988765
No 126
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.03 E-value=6.9e-06 Score=61.91 Aligned_cols=49 Identities=24% Similarity=0.221 Sum_probs=37.1
Q ss_pred HhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC
Q 032721 56 VLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI 108 (135)
Q Consensus 56 ~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~ 108 (135)
+++.+. . +..+|+|||||+|.++++.++.... + ++++|. |.+++.|+.+
T Consensus 154 ~l~~~~-~-~g~~vLDvG~GSGILaiaA~klGA~-~-v~a~DiDp~Av~~a~~N 203 (295)
T PF06325_consen 154 LLEKYV-K-PGKRVLDVGCGSGILAIAAAKLGAK-K-VVAIDIDPLAVEAAREN 203 (295)
T ss_dssp HHHHHS-S-TTSEEEEES-TTSHHHHHHHHTTBS-E-EEEEESSCHHHHHHHHH
T ss_pred HHHHhc-c-CCCEEEEeCCcHHHHHHHHHHcCCC-e-EEEecCCHHHHHHHHHH
Confidence 344443 3 3379999999999999999987433 5 999999 8899888764
No 127
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.02 E-value=9.1e-06 Score=59.32 Aligned_cols=68 Identities=16% Similarity=0.158 Sum_probs=53.9
Q ss_pred CCCcceEEeecCCCCHHHHHHHHHCC-CCCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCCCC---------C
Q 032721 63 FKGVKRLVDVGGSAGDCLRMILQKHP-FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP---------A 124 (135)
Q Consensus 63 ~~~~~~vvDvGgG~G~~~~~l~~~~p-~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~~p---------~ 124 (135)
..+.++|+|||||+|.-+..+++..| +.+ ++.+|. |+.++.|+++ ++++++.||..+.++ .
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~-v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~ 144 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGR-ITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPE 144 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCC
Confidence 44568999999999999999988866 556 999999 8888888753 689999999976422 2
Q ss_pred CcEEEec
Q 032721 125 ADAIFMK 131 (135)
Q Consensus 125 ~D~~~l~ 131 (135)
.|++++-
T Consensus 145 fD~VfiD 151 (234)
T PLN02781 145 FDFAFVD 151 (234)
T ss_pred CCEEEEC
Confidence 4888764
No 128
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.00 E-value=1.2e-05 Score=61.30 Aligned_cols=65 Identities=23% Similarity=0.212 Sum_probs=49.8
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC--------CCcEEEe----cCCCCCC--CC--CcE
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI--------PGVTHIG----GDMFKSI--PA--ADA 127 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~--------~rv~~~~----gd~~~~~--p~--~D~ 127 (135)
...+++|||||+|.+...++.+.++.+ +++.|+ |.+++.|+.+ .+|++.. .++++.+ +. .|+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~-~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWR-FVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCE-EEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 347999999999999999999999999 999999 8899888753 3677653 3455542 22 387
Q ss_pred EEe
Q 032721 128 IFM 130 (135)
Q Consensus 128 ~~l 130 (135)
++.
T Consensus 193 ivc 195 (321)
T PRK11727 193 TLC 195 (321)
T ss_pred EEe
Confidence 765
No 129
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.99 E-value=3.4e-06 Score=61.36 Aligned_cols=65 Identities=12% Similarity=0.023 Sum_probs=47.3
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC---C--CcEEEecCCCCCC-C--CCcEEEecccC
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI---P--GVTHIGGDMFKSI-P--AADAIFMKVHH 134 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~---~--rv~~~~gd~~~~~-p--~~D~~~l~~vl 134 (135)
.+|||||||-|.++..+++.. .+ ++++|+ ++.++.|+.+ . .+++......+-. . ..|+|+.-.||
T Consensus 61 ~~vLDvGCGgG~Lse~mAr~G--a~-VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVl 134 (243)
T COG2227 61 LRVLDVGCGGGILSEPLARLG--AS-VTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVL 134 (243)
T ss_pred CeEEEecCCccHhhHHHHHCC--Ce-eEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHH
Confidence 799999999999999999986 66 999999 9999999864 2 2334443332111 1 24888876654
No 130
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.98 E-value=1.6e-05 Score=62.77 Aligned_cols=73 Identities=18% Similarity=0.159 Sum_probs=56.0
Q ss_pred HhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-----CCcEEEecCCCCC---CC-C-
Q 032721 56 VLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS---IP-A- 124 (135)
Q Consensus 56 ~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-----~rv~~~~gd~~~~---~p-~- 124 (135)
++..++ ..+..+|+|+|||+|..+..+++..++.+ ++++|. +.+++.++++ -+++++.+|..+. .+ .
T Consensus 236 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~-v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 236 AATLLA-PQNGERVLDACAAPGGKTAHILELAPQAQ-VVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQP 313 (427)
T ss_pred HHHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCC
Confidence 334454 44557999999999999999999998777 999999 8888887653 2478889998653 12 2
Q ss_pred CcEEEe
Q 032721 125 ADAIFM 130 (135)
Q Consensus 125 ~D~~~l 130 (135)
.|.+++
T Consensus 314 fD~Vl~ 319 (427)
T PRK10901 314 FDRILL 319 (427)
T ss_pred CCEEEE
Confidence 488874
No 131
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.97 E-value=2.1e-05 Score=60.10 Aligned_cols=73 Identities=21% Similarity=0.056 Sum_probs=53.7
Q ss_pred HHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCC-CCC-
Q 032721 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IPA- 124 (135)
Q Consensus 54 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~-~p~- 124 (135)
..++.... +.+..+|+|+|||+|.++.+.+.. ..+ ++++|+ +.++..++.+ +.+++..+|+.+- .+.
T Consensus 172 ~~~~~l~~-~~~g~~vLDp~cGtG~~lieaa~~--~~~-v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~ 247 (329)
T TIGR01177 172 RAMVNLAR-VTEGDRVLDPFCGTGGFLIEAGLM--GAK-VIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSE 247 (329)
T ss_pred HHHHHHhC-CCCcCEEEECCCCCCHHHHHHHHh--CCe-EEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccC
Confidence 33444444 666679999999999999887654 567 999999 8888877643 4578899999763 322
Q ss_pred -CcEEEe
Q 032721 125 -ADAIFM 130 (135)
Q Consensus 125 -~D~~~l 130 (135)
.|++++
T Consensus 248 ~~D~Iv~ 254 (329)
T TIGR01177 248 SVDAIAT 254 (329)
T ss_pred CCCEEEE
Confidence 498887
No 132
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.97 E-value=1.4e-05 Score=57.82 Aligned_cols=67 Identities=15% Similarity=-0.054 Sum_probs=49.3
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-----CCcEEEecCCCCCC--C-C-CcEEEecccC
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSI--P-A-ADAIFMKVHH 134 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-----~rv~~~~gd~~~~~--p-~-~D~~~l~~vl 134 (135)
+..+|+|||||+|.++..+++. ..+ ++++|+ +..++.++++ .+++++.+|+.+.. + . .|++++.+++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL--GAD-VTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCe-EEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 3478999999999999988875 456 999999 7777776542 35778777774322 2 2 4999887654
No 133
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.96 E-value=8.7e-06 Score=64.25 Aligned_cols=71 Identities=18% Similarity=0.375 Sum_probs=53.5
Q ss_pred HhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCCCC-----
Q 032721 56 VLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP----- 123 (135)
Q Consensus 56 ~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~~p----- 123 (135)
+.+.++ ..+..+|+|+|||+|.++..+++... + ++++|. +.+++.|+++ .+++++.+|+.+.++
T Consensus 284 ~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~~--~-V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~ 359 (431)
T TIGR00479 284 ALEALE-LQGEELVVDAYCGVGTFTLPLAKQAK--S-VVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWA 359 (431)
T ss_pred HHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhCC--E-EEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhc
Confidence 333333 44557999999999999999998743 5 999999 9999988764 579999999854222
Q ss_pred -C-CcEEEe
Q 032721 124 -A-ADAIFM 130 (135)
Q Consensus 124 -~-~D~~~l 130 (135)
. .|++++
T Consensus 360 ~~~~D~vi~ 368 (431)
T TIGR00479 360 GQIPDVLLL 368 (431)
T ss_pred CCCCCEEEE
Confidence 1 388876
No 134
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=1.4e-05 Score=54.24 Aligned_cols=72 Identities=21% Similarity=0.290 Sum_probs=53.3
Q ss_pred hccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-----CCcEEEecCCCCCCCC-C--cE
Q 032721 57 LDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIPA-A--DA 127 (135)
Q Consensus 57 ~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-----~rv~~~~gd~~~~~p~-~--D~ 127 (135)
-+.|+.+++ +.+.|+|||.|-++ ++-.+|..+.++++|+ |++++.+..+ -+++++..|..+..+. + |.
T Consensus 41 h~TygdiEg-kkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDt 117 (185)
T KOG3420|consen 41 HNTYGDIEG-KKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDT 117 (185)
T ss_pred HhhhccccC-cchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEee
Confidence 344543544 78999999999999 5556777666999999 9999998876 3678888888776553 2 65
Q ss_pred EEec
Q 032721 128 IFMK 131 (135)
Q Consensus 128 ~~l~ 131 (135)
.++.
T Consensus 118 aviN 121 (185)
T KOG3420|consen 118 AVIN 121 (185)
T ss_pred EEec
Confidence 5543
No 135
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.93 E-value=3.5e-05 Score=55.72 Aligned_cols=66 Identities=14% Similarity=0.084 Sum_probs=49.9
Q ss_pred CCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCC------------------CCCcEEEecCCCCCCC
Q 032721 63 FKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPS------------------IPGVTHIGGDMFKSIP 123 (135)
Q Consensus 63 ~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~------------------~~rv~~~~gd~~~~~p 123 (135)
..+..+|+|+|||.|..+..|+++ +.+ ++++|+ |.+++.+.. ..+|++..+|+|+..+
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~--G~~-V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ--GHE-VLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC--CCe-EEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCc
Confidence 334479999999999999999985 667 999999 888876411 1568999999997532
Q ss_pred ----CCcEEEec
Q 032721 124 ----AADAIFMK 131 (135)
Q Consensus 124 ----~~D~~~l~ 131 (135)
..|+++-+
T Consensus 112 ~~~~~fd~v~D~ 123 (218)
T PRK13255 112 ADLADVDAVYDR 123 (218)
T ss_pred ccCCCeeEEEeh
Confidence 23777743
No 136
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.90 E-value=3.6e-05 Score=57.11 Aligned_cols=75 Identities=20% Similarity=0.380 Sum_probs=58.2
Q ss_pred cHHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCC----C---CCcEEEecCCCCC-C
Q 032721 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPS----I---PGVTHIGGDMFKS-I 122 (135)
Q Consensus 52 ~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~----~---~rv~~~~gd~~~~-~ 122 (135)
++..|++.-+ ......|++||.|||.+...++++... ++.+++ |.+++...+ . .+.+++.|||++. +
T Consensus 46 v~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~kk---VvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~ 121 (315)
T KOG0820|consen 46 VIDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAGKK---VVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL 121 (315)
T ss_pred HHHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhcCe---EEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC
Confidence 4556777766 777789999999999999999998554 788887 777765432 2 5799999999976 7
Q ss_pred CCCcEEEe
Q 032721 123 PAADAIFM 130 (135)
Q Consensus 123 p~~D~~~l 130 (135)
|.-|.++-
T Consensus 122 P~fd~cVs 129 (315)
T KOG0820|consen 122 PRFDGCVS 129 (315)
T ss_pred cccceeec
Confidence 77676653
No 137
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.89 E-value=5.6e-05 Score=55.07 Aligned_cols=78 Identities=19% Similarity=0.197 Sum_probs=48.7
Q ss_pred HHHHhccCCCC-CCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHH-hCCCCCCcE-EEecCCC--------C
Q 032721 53 MTSVLDGYDGF-KGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVA-EAPSIPGVT-HIGGDMF--------K 120 (135)
Q Consensus 53 ~~~~~~~~~~~-~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~-~a~~~~rv~-~~~gd~~--------~ 120 (135)
...+++.++ . .+..+++|+|||+|.++..+++. +.-+ ++++|. +.++. ..++++++. +...|+- .
T Consensus 63 L~~~l~~~~-~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~-v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~ 139 (228)
T TIGR00478 63 LKEALEEFN-IDVKNKIVLDVGSSTGGFTDCALQK-GAKE-VYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFP 139 (228)
T ss_pred HHHHHHhcC-CCCCCCEEEEcccCCCHHHHHHHHc-CCCE-EEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCC
Confidence 345555554 3 23468999999999999999986 4445 999999 54555 345555543 2222321 1
Q ss_pred CCCCCcEEEeccc
Q 032721 121 SIPAADAIFMKVH 133 (135)
Q Consensus 121 ~~p~~D~~~l~~v 133 (135)
+++..|+.+.+..
T Consensus 140 d~~~~DvsfiS~~ 152 (228)
T TIGR00478 140 DFATFDVSFISLI 152 (228)
T ss_pred CceeeeEEEeehH
Confidence 2334588886643
No 138
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.89 E-value=1.8e-05 Score=58.81 Aligned_cols=67 Identities=24% Similarity=0.348 Sum_probs=51.3
Q ss_pred CCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC----------CCcEEEecCCCCCC---CC-CcEE
Q 032721 64 KGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI----------PGVTHIGGDMFKSI---PA-ADAI 128 (135)
Q Consensus 64 ~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~----------~rv~~~~gd~~~~~---p~-~D~~ 128 (135)
++.++|++||||+|.++..+++..+..+ ++++|+ +.+++.+++. ++++++.+|.++-+ +. -|++
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~-v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEK-ATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcce-EEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 3456999999999999999988655556 999999 8888877542 57888888876532 33 3888
Q ss_pred Eec
Q 032721 129 FMK 131 (135)
Q Consensus 129 ~l~ 131 (135)
++.
T Consensus 150 i~D 152 (270)
T TIGR00417 150 IVD 152 (270)
T ss_pred EEe
Confidence 864
No 139
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.89 E-value=4.8e-06 Score=64.70 Aligned_cols=62 Identities=15% Similarity=0.059 Sum_probs=48.9
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCCCC----CCcEEEe
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP----AADAIFM 130 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~~p----~~D~~~l 130 (135)
..+|+|+|||+|.++..++.. ..+ ++++|. |.+++.|+++ ++++++.+|+.+..+ ..|++++
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~--~~~-v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~ 306 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGP--DTQ-LTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLV 306 (374)
T ss_pred CCEEEEccCCccHHHHHHhhc--CCe-EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEE
Confidence 368999999999999999964 356 999999 8899887754 478999999854322 2488876
No 140
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.85 E-value=2.1e-05 Score=58.70 Aligned_cols=81 Identities=17% Similarity=0.269 Sum_probs=54.8
Q ss_pred HHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC----C--CcEEEecCCC---CCCC
Q 032721 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI----P--GVTHIGGDMF---KSIP 123 (135)
Q Consensus 54 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~----~--rv~~~~gd~~---~~~p 123 (135)
.++....+.|. ..+|+|+|+|+|..+.++...+|++..++++|. +.+++.++.. . +......++. .+++
T Consensus 23 ~El~~r~p~f~-P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 101 (274)
T PF09243_consen 23 SELRKRLPDFR-PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP 101 (274)
T ss_pred HHHHHhCcCCC-CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC
Confidence 34444444343 479999999999999999999997656899998 8888766531 1 1111112222 2244
Q ss_pred CCcEEEecccCC
Q 032721 124 AADAIFMKVHHF 135 (135)
Q Consensus 124 ~~D~~~l~~vl~ 135 (135)
..|+++++|+|+
T Consensus 102 ~~DLvi~s~~L~ 113 (274)
T PF09243_consen 102 PDDLVIASYVLN 113 (274)
T ss_pred CCcEEEEehhhh
Confidence 569999999984
No 141
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=97.84 E-value=4.2e-05 Score=60.72 Aligned_cols=67 Identities=18% Similarity=0.149 Sum_probs=51.9
Q ss_pred CCCcceEEeecCCCCHHHHHHHHHCC-CCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCCCCC--CcEEEe
Q 032721 63 FKGVKRLVDVGGSAGDCLRMILQKHP-FICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA--ADAIFM 130 (135)
Q Consensus 63 ~~~~~~vvDvGgG~G~~~~~l~~~~p-~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~~p~--~D~~~l 130 (135)
..+..+|+|+|||+|..+..+++..+ ..+ ++.+|+ +.+++.++++ .+|+++.+|..+..|. .|++++
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~-V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~ 324 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQ-ITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILL 324 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcE-EEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEE
Confidence 33447999999999999998888664 346 999999 8888887653 4689999998654332 499886
No 142
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.83 E-value=3e-05 Score=58.14 Aligned_cols=68 Identities=26% Similarity=0.347 Sum_probs=55.6
Q ss_pred CCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC----------CCcEEEecCCCCC---CCC-CcE
Q 032721 63 FKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI----------PGVTHIGGDMFKS---IPA-ADA 127 (135)
Q Consensus 63 ~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~----------~rv~~~~gd~~~~---~p~-~D~ 127 (135)
.++.++|+=||||.|..++++++..+--+ ++.+|+ |.+++.+++. +|++.+.+|-++- .+. .|+
T Consensus 74 h~~pk~VLiiGgGdG~tlRevlkh~~ve~-i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv 152 (282)
T COG0421 74 HPNPKRVLIIGGGDGGTLREVLKHLPVER-ITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV 152 (282)
T ss_pred CCCCCeEEEECCCccHHHHHHHhcCCcce-EEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCE
Confidence 34457999999999999999999777656 999999 9999998752 7999999997654 343 599
Q ss_pred EEec
Q 032721 128 IFMK 131 (135)
Q Consensus 128 ~~l~ 131 (135)
|++-
T Consensus 153 Ii~D 156 (282)
T COG0421 153 IIVD 156 (282)
T ss_pred EEEc
Confidence 9864
No 143
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.83 E-value=6.4e-06 Score=56.96 Aligned_cols=62 Identities=21% Similarity=0.302 Sum_probs=47.9
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCCCC-----C-CcEEEec
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP-----A-ADAIFMK 131 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~~p-----~-~D~~~l~ 131 (135)
.+|+|+.||.|.-++.+++.++. ++.+|+ |..++.++.+ ++|+++.||+++-++ . .|+++++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~---Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDR---VIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-E---EEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhCCe---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 37999999999999999999655 999999 8888888754 689999999987532 1 4888875
No 144
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.79 E-value=4.5e-05 Score=60.63 Aligned_cols=94 Identities=24% Similarity=0.291 Sum_probs=59.6
Q ss_pred ccccccCchHHHHHHHHHhccccccHHHHhccCCCCC----CcceEEeecCCCCHHHHHHHHHC----CCCCeeEEeec-
Q 032721 28 YSYYGKKPEMNGLMRKAMSGVSVPFMTSVLDGYDGFK----GVKRLVDVGGSAGDCLRMILQKH----PFICEGINFDL- 98 (135)
Q Consensus 28 ~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~----~~~~vvDvGgG~G~~~~~l~~~~----p~l~~~~~~D~- 98 (135)
||-+++|+..-..|.+|+.. ++.+... -. +...|+|||+|+|-++...+++. ...+ ++.++-
T Consensus 153 Ye~fE~D~vKY~~Ye~AI~~-------al~D~~~-~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~-VyAVEkn 223 (448)
T PF05185_consen 153 YEVFEKDPVKYDQYERAIEE-------ALKDRVR-KNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVK-VYAVEKN 223 (448)
T ss_dssp HHHHCC-HHHHHHHHHHHHH-------HHHHHHT-TS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESE-EEEEESS
T ss_pred HhhHhcCHHHHHHHHHHHHH-------HHHhhhh-hccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeE-EEEEcCC
Confidence 56667788777788887643 2333322 11 24789999999999987666553 3445 999987
Q ss_pred hHHHHhC----CCC---CCcEEEecCCCCC-CCC-CcEEEe
Q 032721 99 PEVVAEA----PSI---PGVTHIGGDMFKS-IPA-ADAIFM 130 (135)
Q Consensus 99 p~~~~~a----~~~---~rv~~~~gd~~~~-~p~-~D~~~l 130 (135)
|.++... ..+ ++|+++.+|+-+- +|. +|+++-
T Consensus 224 ~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVS 264 (448)
T PF05185_consen 224 PNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVS 264 (448)
T ss_dssp THHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE
T ss_pred HhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEE
Confidence 5444332 122 7899999999665 565 699874
No 145
>PLN02823 spermine synthase
Probab=97.77 E-value=3.9e-05 Score=58.87 Aligned_cols=66 Identities=21% Similarity=0.207 Sum_probs=53.1
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC----------CCcEEEecCCCCCC---CC-CcEEE
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI----------PGVTHIGGDMFKSI---PA-ADAIF 129 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~----------~rv~~~~gd~~~~~---p~-~D~~~ 129 (135)
+.++|+-||||.|..+.++++..+..+ ++++|+ |.+++.+++. +|++++.+|.++-+ +. .|+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~-v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEK-VVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCe-EEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 457899999999999999998655556 999999 9999988742 68999999887643 22 48888
Q ss_pred ec
Q 032721 130 MK 131 (135)
Q Consensus 130 l~ 131 (135)
+-
T Consensus 182 ~D 183 (336)
T PLN02823 182 GD 183 (336)
T ss_pred ec
Confidence 74
No 146
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=0.00014 Score=53.51 Aligned_cols=88 Identities=15% Similarity=0.141 Sum_probs=68.8
Q ss_pred HHHHHhccccc----cHHHHhccCCCCCCcceEEeecCCCCHHHHHHHH-HCCCCCeeEEeec-hHHHHhCCCC------
Q 032721 41 MRKAMSGVSVP----FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQ-KHPFICEGINFDL-PEVVAEAPSI------ 108 (135)
Q Consensus 41 f~~~m~~~~~~----~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~-~~p~l~~~~~~D~-p~~~~~a~~~------ 108 (135)
+...|...++. .+..|+...+ .....+|+|.|.|+|.++..|+. ..|.-+ ++.+|. ++-.+.|+++
T Consensus 67 ~~~~~~R~tQiIyPKD~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~-v~tyE~r~d~~k~A~~Nl~~~~l 144 (256)
T COG2519 67 YLLSMKRRTQIIYPKDAGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGH-VTTYEIREDFAKTARENLSEFGL 144 (256)
T ss_pred HHHhCcCCCceecCCCHHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCce-EEEEEecHHHHHHHHHHHHHhcc
Confidence 33447776664 3566777776 77889999999999999999997 566677 999999 8888888765
Q ss_pred -CCcEEEecCCCCC-CCC-CcEEEe
Q 032721 109 -PGVTHIGGDMFKS-IPA-ADAIFM 130 (135)
Q Consensus 109 -~rv~~~~gd~~~~-~p~-~D~~~l 130 (135)
+++++..+|.-+. .+. .|+++|
T Consensus 145 ~d~v~~~~~Dv~~~~~~~~vDav~L 169 (256)
T COG2519 145 GDRVTLKLGDVREGIDEEDVDAVFL 169 (256)
T ss_pred ccceEEEeccccccccccccCEEEE
Confidence 5699999999776 343 488876
No 147
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.76 E-value=4e-05 Score=54.91 Aligned_cols=66 Identities=14% Similarity=-0.028 Sum_probs=49.0
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCCC---CC-CcEEEecccC
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSI---PA-ADAIFMKVHH 134 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~~---p~-~D~~~l~~vl 134 (135)
..+|+|+|||+|.++..+++.. .+ ++++|+ +.+++.++.. .++++..+|+.+.. +. .|++++.+++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~--~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLG--AN-VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcC--Ce-EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 4699999999999999888864 45 999999 7787776542 25888888874431 23 4999887543
No 148
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.75 E-value=1.5e-05 Score=57.59 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=41.6
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-CCcEEEecCCCCCCC
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKSIP 123 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-~rv~~~~gd~~~~~p 123 (135)
...|+|||||+|.-+..|...- .. .+++|+ |.|++.|.+. -.=.++-+|+=+.+|
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~G--h~-wiGvDiSpsML~~a~~~e~egdlil~DMG~Glp 107 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSG--HQ-WIGVDISPSMLEQAVERELEGDLILCDMGEGLP 107 (270)
T ss_pred CcEEEEeccCCCcchheeccCC--ce-EEeecCCHHHHHHHHHhhhhcCeeeeecCCCCC
Confidence 6899999999998887776653 56 899999 9999998752 113466677766655
No 149
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.75 E-value=2.6e-05 Score=60.25 Aligned_cols=51 Identities=14% Similarity=0.044 Sum_probs=43.6
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCC
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFK 120 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~ 120 (135)
.+++|++||+|.++..+++... + ++++|. +++++.++++ ++++++.+|..+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~-v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--R-VLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--E-EEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999998864 6 999999 9999988764 478999999854
No 150
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.70 E-value=0.00035 Score=52.08 Aligned_cols=107 Identities=15% Similarity=0.069 Sum_probs=74.6
Q ss_pred cccccccCchHHHHHHHHHhcccccc----------HHHHhccC-C-CCCCcceEEeecCCCC----HHHHHHHHHCCC-
Q 032721 27 AYSYYGKKPEMNGLMRKAMSGVSVPF----------MTSVLDGY-D-GFKGVKRLVDVGGSAG----DCLRMILQKHPF- 89 (135)
Q Consensus 27 ~~e~~~~~~~~~~~f~~~m~~~~~~~----------~~~~~~~~-~-~~~~~~~vvDvGgG~G----~~~~~l~~~~p~- 89 (135)
++.++..+++..+.|-.+|...-... ...++..+ . .-.+.-+|.-.||+|| .++..+.+..|.
T Consensus 46 y~~~l~~~~~e~~~~l~~ltin~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~ 125 (268)
T COG1352 46 YLNLLESDSEELQAFLDALTINVTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKL 125 (268)
T ss_pred HHHHHhCCHHHHHHHHHHhhhccchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccc
Confidence 45566777777788888887654421 12222211 1 0113568999999999 588888888874
Q ss_pred ----CCeeEEeec-hHHHHhCCCC-----------------------------------CCcEEEecCCCCCC--CC-Cc
Q 032721 90 ----ICEGINFDL-PEVVAEAPSI-----------------------------------PGVTHIGGDMFKSI--PA-AD 126 (135)
Q Consensus 90 ----l~~~~~~D~-p~~~~~a~~~-----------------------------------~rv~~~~gd~~~~~--p~-~D 126 (135)
.+ +++-|+ ..+++.|+.- ..|.|..+|.+++. +. -|
T Consensus 126 ~~~~~~-I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD 204 (268)
T COG1352 126 AGFRVK-ILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFD 204 (268)
T ss_pred cCCceE-EEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCC
Confidence 44 899999 8888887641 35899999999874 33 39
Q ss_pred EEEecccC
Q 032721 127 AIFMKVHH 134 (135)
Q Consensus 127 ~~~l~~vl 134 (135)
+|+++|||
T Consensus 205 ~IfCRNVL 212 (268)
T COG1352 205 LIFCRNVL 212 (268)
T ss_pred EEEEcceE
Confidence 99999997
No 151
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.69 E-value=6.2e-05 Score=57.63 Aligned_cols=72 Identities=24% Similarity=0.295 Sum_probs=54.1
Q ss_pred HHhc-cCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeechHHHHhCCCC-------CCcEEEecCCCCC-CCC-
Q 032721 55 SVLD-GYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDLPEVVAEAPSI-------PGVTHIGGDMFKS-IPA- 124 (135)
Q Consensus 55 ~~~~-~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~p~~~~~a~~~-------~rv~~~~gd~~~~-~p~- 124 (135)
++++ .-| |.. +.|||||||+|.++.-.+++. .-+ +..++-.+|.+.|++. +||.+++|-.-+- +|+
T Consensus 168 Ail~N~sD-F~~-kiVlDVGaGSGILS~FAaqAG-A~~-vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk 243 (517)
T KOG1500|consen 168 AILENHSD-FQD-KIVLDVGAGSGILSFFAAQAG-AKK-VYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEK 243 (517)
T ss_pred HHHhcccc-cCC-cEEEEecCCccHHHHHHHHhC-cce-EEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchh
Confidence 4444 334 655 789999999999988777653 234 8889988888887652 8999999988544 887
Q ss_pred CcEEEe
Q 032721 125 ADAIFM 130 (135)
Q Consensus 125 ~D~~~l 130 (135)
+|+++-
T Consensus 244 ~DviIS 249 (517)
T KOG1500|consen 244 VDVIIS 249 (517)
T ss_pred ccEEEe
Confidence 598874
No 152
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.69 E-value=6.6e-05 Score=54.66 Aligned_cols=52 Identities=19% Similarity=0.230 Sum_probs=42.7
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCC-----C-CCcEEEecCCC
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPS-----I-PGVTHIGGDMF 119 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~-----~-~rv~~~~gd~~ 119 (135)
..+|+||||.|.++..+++++|+.. ++++++ ..++..+-+ . .++.++.+|..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~n-fiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~ 108 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKN-FLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAV 108 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCC-EEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHH
Confidence 5899999999999999999999999 999998 555554432 1 47888888863
No 153
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=0.00019 Score=53.20 Aligned_cols=68 Identities=13% Similarity=0.290 Sum_probs=51.2
Q ss_pred HHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCC----CCCcEEEecCCCCC-CCC
Q 032721 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPS----IPGVTHIGGDMFKS-IPA 124 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~----~~rv~~~~gd~~~~-~p~ 124 (135)
...+++..+ ..+...|++||+|.|.+...|+++... ++++++ +..++..++ .++++.+.+|+.+- +|.
T Consensus 19 ~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~---v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 19 IDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAAR---VTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCe---EEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchh
Confidence 566777776 555689999999999999999999776 555555 544444332 47899999999875 553
No 154
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.68 E-value=3.4e-05 Score=60.47 Aligned_cols=65 Identities=20% Similarity=0.179 Sum_probs=50.0
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC--------CCcEEEecCCCCCCC-------CCcEE
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI--------PGVTHIGGDMFKSIP-------AADAI 128 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~--------~rv~~~~gd~~~~~p-------~~D~~ 128 (135)
+.++|+|+|||+|.++.+.+.. +..+ ++.+|+ +.+++.|+++ ++++++.+|.++.++ ..|++
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~-V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQ-VVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCE-EEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 3479999999999998876653 3346 999999 8899887753 268999999987531 24999
Q ss_pred Eec
Q 032721 129 FMK 131 (135)
Q Consensus 129 ~l~ 131 (135)
++.
T Consensus 298 ilD 300 (396)
T PRK15128 298 VMD 300 (396)
T ss_pred EEC
Confidence 874
No 155
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.67 E-value=9.5e-05 Score=57.14 Aligned_cols=65 Identities=28% Similarity=0.483 Sum_probs=52.9
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-------------CCcEEEecCCCCCCCC----Cc
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-------------PGVTHIGGDMFKSIPA----AD 126 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-------------~rv~~~~gd~~~~~p~----~D 126 (135)
+..+++-+|||.|..++++++ +|+..+++.+|+ |.|++.++.+ +|++.+.-|.|+.+.. -|
T Consensus 289 ~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred ccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 457999999999999999987 897666999999 9999998742 7899999998877432 26
Q ss_pred EEEe
Q 032721 127 AIFM 130 (135)
Q Consensus 127 ~~~l 130 (135)
.+|.
T Consensus 368 ~vIV 371 (508)
T COG4262 368 VVIV 371 (508)
T ss_pred EEEE
Confidence 6654
No 156
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.65 E-value=6.7e-05 Score=50.07 Aligned_cols=50 Identities=22% Similarity=0.281 Sum_probs=40.2
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCC
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDM 118 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~ 118 (135)
+++|||||.|.++..+++.+|..+ ++.+|. |...+.++++ ++++++...+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~-v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGR-VIAFEPLPDAYEILEENVKLNNLPNVVLLNAAV 57 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCE-EEEEecCHHHHHHHHHHHHHcCCCcEEEEEeee
Confidence 589999999999999999999988 999999 8887765542 3466665544
No 157
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.65 E-value=4.3e-05 Score=63.91 Aligned_cols=64 Identities=14% Similarity=0.046 Sum_probs=51.6
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC--------CCcEEEecCCCCCC---CC-CcEEEe
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI--------PGVTHIGGDMFKSI---PA-ADAIFM 130 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~--------~rv~~~~gd~~~~~---p~-~D~~~l 130 (135)
+.++|+|+|||+|.++..+++. ...+ ++.+|+ +.+++.|+++ .+++++.+|.++.+ +. .|++++
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~-V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIil 614 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKS-TTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFI 614 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCE-EEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEE
Confidence 3479999999999999999985 3346 999999 8899988753 37999999987643 22 499987
No 158
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.63 E-value=7.7e-05 Score=55.25 Aligned_cols=66 Identities=21% Similarity=0.417 Sum_probs=51.8
Q ss_pred cHHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCC----CCCcEEEecCCCCC
Q 032721 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPS----IPGVTHIGGDMFKS 121 (135)
Q Consensus 52 ~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~----~~rv~~~~gd~~~~ 121 (135)
.++.+++..+ ..+...|+|||.|+|.++..|++.. -+ ++++|. +..++..++ .++++++.+|+++-
T Consensus 18 ~~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~--~~-v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 18 IADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG--KR-VIAVEIDPDLAKHLKERFASNPNVEVINGDFLKW 88 (262)
T ss_dssp HHHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS--SE-EEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTS
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc--Cc-ceeecCcHhHHHHHHHHhhhcccceeeecchhcc
Confidence 3556777776 6677899999999999999999988 34 888887 666655443 47999999999875
No 159
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.62 E-value=3.5e-05 Score=59.66 Aligned_cols=51 Identities=14% Similarity=0.059 Sum_probs=43.4
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCC
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFK 120 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~ 120 (135)
.+++|++||+|.++..+++... + ++++|. +.+++.++++ ++++++.+|..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~-v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--R-VLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--E-EEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 4799999999999999998764 5 999999 8899888754 579999999854
No 160
>PRK00536 speE spermidine synthase; Provisional
Probab=97.60 E-value=0.00015 Score=53.93 Aligned_cols=63 Identities=14% Similarity=0.077 Sum_probs=49.6
Q ss_pred CCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC----------CCcEEEecCCCCCCC-C-CcEEEe
Q 032721 64 KGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI----------PGVTHIGGDMFKSIP-A-ADAIFM 130 (135)
Q Consensus 64 ~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~----------~rv~~~~gd~~~~~p-~-~D~~~l 130 (135)
++.++||=||||.|..++++++. |. + ++.+|+ +.|++.+++. +|++++. ++.+.. . -|++++
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~-v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~--~~~~~~~~~fDVIIv 145 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-H-VDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK--QLLDLDIKKYDLIIC 145 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-e-eEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee--hhhhccCCcCCEEEE
Confidence 45689999999999999999995 65 7 999999 8999888762 7888886 333322 3 499886
Q ss_pred c
Q 032721 131 K 131 (135)
Q Consensus 131 ~ 131 (135)
-
T Consensus 146 D 146 (262)
T PRK00536 146 L 146 (262)
T ss_pred c
Confidence 4
No 161
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.60 E-value=7.3e-05 Score=54.74 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=44.8
Q ss_pred HHHhccCC-CCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC
Q 032721 54 TSVLDGYD-GFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI 108 (135)
Q Consensus 54 ~~~~~~~~-~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~ 108 (135)
+..+..++ .|-....++||||.+|.++..|++.+.... +.++|+ |..++.|+++
T Consensus 46 D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~-iLGvDID~~LI~~Ark~ 101 (288)
T KOG2899|consen 46 DPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRR-ILGVDIDPVLIQRARKE 101 (288)
T ss_pred ChhhhhccccccCcceeEeccCCcchhHHHHHHhhccce-eeEeeccHHHHHHHHHh
Confidence 44555554 355568999999999999999999999988 999999 8888888764
No 162
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.59 E-value=0.00034 Score=50.92 Aligned_cols=65 Identities=14% Similarity=-0.009 Sum_probs=50.3
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCC------------------CCCcEEEecCCCCCCC--
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPS------------------IPGVTHIGGDMFKSIP-- 123 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~------------------~~rv~~~~gd~~~~~p-- 123 (135)
+..+|++.|||.|.-+.-|+++ +.+ ++++|+ |..++.+.+ ..+|++..+|||+--+
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~--G~~-V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK--GVK-VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC--CCc-EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 4479999999999999999986 567 999999 888887421 1579999999998522
Q ss_pred ----CCcEEEecc
Q 032721 124 ----AADAIFMKV 132 (135)
Q Consensus 124 ----~~D~~~l~~ 132 (135)
.-|+|+=+.
T Consensus 120 ~~~~~fD~VyDra 132 (226)
T PRK13256 120 NNLPVFDIWYDRG 132 (226)
T ss_pred cccCCcCeeeeeh
Confidence 138776543
No 163
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.59 E-value=4.7e-05 Score=53.89 Aligned_cols=54 Identities=9% Similarity=-0.023 Sum_probs=44.4
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCC
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS 121 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~ 121 (135)
..+++|++||+|.++.+++++... + ++.+|. +.+++.++++ ++++++.+|.++.
T Consensus 50 g~~vLDLfaGsG~lglea~srga~-~-v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~ 111 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAK-V-AFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA 111 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCC-E-EEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH
Confidence 368999999999999999998664 6 999999 7888776653 4788999998653
No 164
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.57 E-value=0.00043 Score=49.30 Aligned_cols=69 Identities=20% Similarity=0.226 Sum_probs=44.4
Q ss_pred CcceEEeecCCCCH----HHHHHHHHCC---C--CCeeEEeec-hHHHHhCCCC--------------------------
Q 032721 65 GVKRLVDVGGSAGD----CLRMILQKHP---F--ICEGINFDL-PEVVAEAPSI-------------------------- 108 (135)
Q Consensus 65 ~~~~vvDvGgG~G~----~~~~l~~~~p---~--l~~~~~~D~-p~~~~~a~~~-------------------------- 108 (135)
+.-+|...||++|. ++..+.+..+ . .+ +++-|+ +.+++.|++-
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~-I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFR-ILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEE-EEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceE-EEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 45799999999994 4444444222 2 34 899999 8899887631
Q ss_pred --------CCcEEEecCCCCC-CCC--CcEEEecccC
Q 032721 109 --------PGVTHIGGDMFKS-IPA--ADAIFMKVHH 134 (135)
Q Consensus 109 --------~rv~~~~gd~~~~-~p~--~D~~~l~~vl 134 (135)
.+|+|..+|+++. .+. -|+|+++|||
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVl 146 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVL 146 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSG
T ss_pred eeEChHHcCceEEEecccCCCCcccCCccEEEecCEE
Confidence 5799999999993 222 3999999997
No 165
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.57 E-value=7.6e-05 Score=54.50 Aligned_cols=44 Identities=27% Similarity=0.242 Sum_probs=36.2
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCCCCcE
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSIPGVT 112 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~~rv~ 112 (135)
.+.++|||||+|..++.++..+.+ +++.|. +.+++.|++.++++
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~k~---VIatD~s~~mL~~a~k~~~~~ 78 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHYKE---VIATDVSEAMLKVAKKHPPVT 78 (261)
T ss_pred cceEEEeccCCCcchHHHHHhhhh---heeecCCHHHHHHhhcCCCcc
Confidence 358999999999888888887655 999999 99999998874433
No 166
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.57 E-value=0.0001 Score=56.32 Aligned_cols=65 Identities=18% Similarity=0.123 Sum_probs=50.3
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeechHHHHhCCC----C---CCcEEEecCCCCC-CC-CC-cEEEecc
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDLPEVVAEAPS----I---PGVTHIGGDMFKS-IP-AA-DAIFMKV 132 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~p~~~~~a~~----~---~rv~~~~gd~~~~-~p-~~-D~~~l~~ 132 (135)
.++|+|||||+|.++.-.+++. ..+ +.++|-..+.+.|.+ + ..|+++.|..-+- +| +. |+++--|
T Consensus 61 dK~VlDVGcGtGILS~F~akAG-A~~-V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEW 135 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAG-ARK-VYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEW 135 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhC-cce-EEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehh
Confidence 4899999999999999999886 335 999999888877764 2 4688888877443 78 33 8887543
No 167
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.54 E-value=0.00019 Score=56.81 Aligned_cols=71 Identities=13% Similarity=0.034 Sum_probs=53.4
Q ss_pred ccCCCCCCcceEEeecCCCCHHHHHHHHHCC-CCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCCC---C---
Q 032721 58 DGYDGFKGVKRLVDVGGSAGDCLRMILQKHP-FICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSI---P--- 123 (135)
Q Consensus 58 ~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p-~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~~---p--- 123 (135)
..++ ..+..+|+|+|||+|..+..+++..+ ..+ ++.+|+ +.+++.++++ .+|+++.+|..+.. +
T Consensus 246 ~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~-v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 246 PLLD-PQPGEVILDACAAPGGKTTHIAELMGDQGE-IWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred HHhC-CCCcCEEEEeCCCCchhHHHHHHHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccccccc
Confidence 3444 44557999999999999999998865 356 999999 8888877653 46899999985431 1
Q ss_pred -CCcEEEe
Q 032721 124 -AADAIFM 130 (135)
Q Consensus 124 -~~D~~~l 130 (135)
..|.|++
T Consensus 324 ~~fD~Vl~ 331 (434)
T PRK14901 324 GYFDRILL 331 (434)
T ss_pred ccCCEEEE
Confidence 2498886
No 168
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.53 E-value=0.00013 Score=57.58 Aligned_cols=73 Identities=15% Similarity=0.121 Sum_probs=52.6
Q ss_pred HhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------C-CcEEEecCCCCCC---C-
Q 032721 56 VLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------P-GVTHIGGDMFKSI---P- 123 (135)
Q Consensus 56 ~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~-rv~~~~gd~~~~~---p- 123 (135)
++..++ ..+..+|+|+|||+|..+..+++..++.+ ++++|. +.+++.++++ . ++.++.+|..... +
T Consensus 230 ~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~-v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~ 307 (426)
T TIGR00563 230 VATWLA-PQNEETILDACAAPGGKTTHILELAPQAQ-VVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAEN 307 (426)
T ss_pred HHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCe-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccc
Confidence 334454 44557999999999999999999888677 999999 8888877653 1 2344667765431 2
Q ss_pred C-CcEEEe
Q 032721 124 A-ADAIFM 130 (135)
Q Consensus 124 ~-~D~~~l 130 (135)
. .|.+++
T Consensus 308 ~~fD~Vll 315 (426)
T TIGR00563 308 EQFDRILL 315 (426)
T ss_pred cccCEEEE
Confidence 2 488875
No 169
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=97.51 E-value=0.00025 Score=52.66 Aligned_cols=67 Identities=15% Similarity=0.029 Sum_probs=50.6
Q ss_pred CCCcceEEeecCCCCHHHHHHHHHCCC-CCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCC---CCCCcEEEe
Q 032721 63 FKGVKRLVDVGGSAGDCLRMILQKHPF-ICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS---IPAADAIFM 130 (135)
Q Consensus 63 ~~~~~~vvDvGgG~G~~~~~l~~~~p~-l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~---~p~~D~~~l 130 (135)
..+..+|+|+|||+|..+..+++..++ -. ++.+|+ +..++.++++ .+++++.+|.... .+..|++++
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~-v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~ 146 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGA-IVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILL 146 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCE-EEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEE
Confidence 344579999999999999999988754 46 999999 8888777643 4688888886331 123588876
No 170
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.51 E-value=0.00015 Score=48.79 Aligned_cols=55 Identities=24% Similarity=0.326 Sum_probs=41.3
Q ss_pred CCcceEEeecCCCCHHHHHHHHH----CCCCCeeEEeec-hHHHHhCCCC---------CCcEEEecCCC
Q 032721 64 KGVKRLVDVGGSAGDCLRMILQK----HPFICEGINFDL-PEVVAEAPSI---------PGVTHIGGDMF 119 (135)
Q Consensus 64 ~~~~~vvDvGgG~G~~~~~l~~~----~p~l~~~~~~D~-p~~~~~a~~~---------~rv~~~~gd~~ 119 (135)
.+..+|||+|||.|+++..++.. .|+++ ++++|. +..++.+... .++++..++..
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 92 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLR-VLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIA 92 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCe-EEEEECCcHHHHHHHHHHHHhcchhhccchhhccchh
Confidence 45689999999999999999992 27888 999998 7666665432 45666666553
No 171
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.47 E-value=0.00022 Score=56.45 Aligned_cols=70 Identities=13% Similarity=0.059 Sum_probs=52.7
Q ss_pred cCCCCCCcceEEeecCCCCHHHHHHHHHC-CCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCC---CCC-Cc
Q 032721 59 GYDGFKGVKRLVDVGGSAGDCLRMILQKH-PFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS---IPA-AD 126 (135)
Q Consensus 59 ~~~~~~~~~~vvDvGgG~G~~~~~l~~~~-p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~---~p~-~D 126 (135)
.++ ..+..+|+|+|||+|..+..+++.. +..+ ++.+|+ +..++.++++ .+++++.+|..+. .+. .|
T Consensus 232 ~l~-~~~g~~VLD~cagpGgkt~~la~~~~~~g~-V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD 309 (431)
T PRK14903 232 LME-LEPGLRVLDTCAAPGGKTTAIAELMKDQGK-ILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFD 309 (431)
T ss_pred HhC-CCCCCEEEEeCCCccHHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCC
Confidence 344 4455799999999999999999876 4557 999999 8888887653 4588989997532 122 48
Q ss_pred EEEe
Q 032721 127 AIFM 130 (135)
Q Consensus 127 ~~~l 130 (135)
.+++
T Consensus 310 ~Vl~ 313 (431)
T PRK14903 310 RILV 313 (431)
T ss_pred EEEE
Confidence 8876
No 172
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.45 E-value=0.00039 Score=51.27 Aligned_cols=90 Identities=16% Similarity=0.231 Sum_probs=60.9
Q ss_pred HHHHHHHhcccccc----HHHHhccCCCCCCcceEEeecCCCCHHHHHHHHH-CCCCCeeEEeec-hHHHHhCCCC----
Q 032721 39 GLMRKAMSGVSVPF----MTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQK-HPFICEGINFDL-PEVVAEAPSI---- 108 (135)
Q Consensus 39 ~~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~-~p~l~~~~~~D~-p~~~~~a~~~---- 108 (135)
+.|...|...++.. +..|+...+ ..+..+|++.|.|+|.++..|++. .|.-+ +.-+|. ++..+.|+++
T Consensus 11 e~~~~~l~rrtQIiYpkD~~~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~-v~t~E~~~~~~~~A~~n~~~~ 88 (247)
T PF08704_consen 11 ELWTLSLPRRTQIIYPKDISYILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGH-VYTYEFREDRAEKARKNFERH 88 (247)
T ss_dssp HHHHHTS-SSS----HHHHHHHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSE-EEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCcceeeCchHHHHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeE-EEccccCHHHHHHHHHHHHHc
Confidence 34566666666643 556777777 777899999999999999999974 57777 999999 8888888754
Q ss_pred ---CCcEEEecCCCCC-CC-----CCcEEEe
Q 032721 109 ---PGVTHIGGDMFKS-IP-----AADAIFM 130 (135)
Q Consensus 109 ---~rv~~~~gd~~~~-~p-----~~D~~~l 130 (135)
++|++...|.-++ ++ .+|+++|
T Consensus 89 gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfL 119 (247)
T PF08704_consen 89 GLDDNVTVHHRDVCEEGFDEELESDFDAVFL 119 (247)
T ss_dssp TCCTTEEEEES-GGCG--STT-TTSEEEEEE
T ss_pred CCCCCceeEecceecccccccccCcccEEEE
Confidence 5799999998543 32 2598887
No 173
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.45 E-value=6.7e-05 Score=54.61 Aligned_cols=51 Identities=16% Similarity=0.216 Sum_probs=39.8
Q ss_pred HHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC
Q 032721 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI 108 (135)
Q Consensus 54 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~ 108 (135)
.+++...+ ...+.+++|+|||||..+.+|...-.. .+++|+ ..|++.|.+.
T Consensus 115 ~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~~---ltGvDiS~nMl~kA~eK 166 (287)
T COG4976 115 AEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMADR---LTGVDISENMLAKAHEK 166 (287)
T ss_pred HHHHHhcc-CCccceeeecccCcCcccHhHHHHHhh---ccCCchhHHHHHHHHhc
Confidence 34444454 445799999999999999999887555 778999 7899998764
No 174
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.44 E-value=0.00069 Score=51.22 Aligned_cols=68 Identities=24% Similarity=0.274 Sum_probs=44.0
Q ss_pred CCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhC------CCC-CCcEEEecCCCCCCCC---CcEEEec
Q 032721 63 FKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEA------PSI-PGVTHIGGDMFKSIPA---ADAIFMK 131 (135)
Q Consensus 63 ~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a------~~~-~rv~~~~gd~~~~~p~---~D~~~l~ 131 (135)
+.+ ++|+|||||.|.++..++.+.|. . ++++|. +.-..+. -.. .++.+++ ...+.+|. .|++++-
T Consensus 114 L~g-k~VLDIGC~nGY~~frM~~~GA~-~-ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lp-lgvE~Lp~~~~FDtVF~M 189 (315)
T PF08003_consen 114 LKG-KRVLDIGCNNGYYSFRMLGRGAK-S-VIGIDPSPLFYLQFEAIKHFLGQDPPVFELP-LGVEDLPNLGAFDTVFSM 189 (315)
T ss_pred cCC-CEEEEecCCCcHHHHHHhhcCCC-E-EEEECCChHHHHHHHHHHHHhCCCccEEEcC-cchhhccccCCcCEEEEe
Confidence 433 79999999999999999998665 4 899996 3322221 111 2333332 33355553 3999876
Q ss_pred ccC
Q 032721 132 VHH 134 (135)
Q Consensus 132 ~vl 134 (135)
-||
T Consensus 190 GVL 192 (315)
T PF08003_consen 190 GVL 192 (315)
T ss_pred eeh
Confidence 665
No 175
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.43 E-value=0.00012 Score=52.52 Aligned_cols=62 Identities=19% Similarity=0.256 Sum_probs=48.1
Q ss_pred EEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCCCCC---CcEEEec
Q 032721 69 LVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA---ADAIFMK 131 (135)
Q Consensus 69 vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~~p~---~D~~~l~ 131 (135)
|+||||-.|.+...|+++...-+ ++..|+ +.-++.|+++ ++|++.-||=++.++. .|++++.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~-~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIA 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPK-AIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIA 73 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEE-EEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEe
Confidence 68999999999999999988877 999999 8888877653 7899999998888654 4777764
No 176
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.41 E-value=0.00039 Score=50.30 Aligned_cols=66 Identities=23% Similarity=0.274 Sum_probs=49.4
Q ss_pred CCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCC---C---------------CCCcEEEecCCCCCCC
Q 032721 63 FKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAP---S---------------IPGVTHIGGDMFKSIP 123 (135)
Q Consensus 63 ~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~---~---------------~~rv~~~~gd~~~~~p 123 (135)
.....+|++.|||.|.-+..|+++ +.+ ++++|+ |.+++.+. . ..+|++..||||+--+
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~-VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHD-VVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEE-EEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCe-EEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 445579999999999999999987 457 999999 88888751 1 0468999999998422
Q ss_pred C----CcEEEec
Q 032721 124 A----ADAIFMK 131 (135)
Q Consensus 124 ~----~D~~~l~ 131 (135)
. .|+++=+
T Consensus 112 ~~~g~fD~iyDr 123 (218)
T PF05724_consen 112 EDVGKFDLIYDR 123 (218)
T ss_dssp SCHHSEEEEEEC
T ss_pred hhcCCceEEEEe
Confidence 2 2777643
No 177
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.40 E-value=0.00017 Score=52.65 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=51.9
Q ss_pred ceEEeecCCCCHHHHHHHHHCCC--CCeeEEeec-hHHHHhCCCC-----CCcEEEecCCCCC-----CCCC--cEEEec
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPF--ICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-----IPAA--DAIFMK 131 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~--l~~~~~~D~-p~~~~~a~~~-----~rv~~~~gd~~~~-----~p~~--D~~~l~ 131 (135)
.+|+.||||.|...--|++.+|+ ++ +...|. |.+++..+++ .++..-..|+-.+ .+.+ |+++|-
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~-v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLK-VYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeE-EEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence 48999999999999999999999 88 999999 9999988764 4565556677544 2223 888776
Q ss_pred ccC
Q 032721 132 VHH 134 (135)
Q Consensus 132 ~vl 134 (135)
-||
T Consensus 152 FvL 154 (264)
T KOG2361|consen 152 FVL 154 (264)
T ss_pred EEE
Confidence 554
No 178
>PLN02476 O-methyltransferase
Probab=97.38 E-value=0.00019 Score=53.75 Aligned_cols=68 Identities=19% Similarity=0.192 Sum_probs=53.9
Q ss_pred CCCcceEEeecCCCCHHHHHHHHHCC-CCCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCCCC---------C
Q 032721 63 FKGVKRLVDVGGSAGDCLRMILQKHP-FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP---------A 124 (135)
Q Consensus 63 ~~~~~~vvDvGgG~G~~~~~l~~~~p-~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~~p---------~ 124 (135)
..+.++|++||+++|..+..+++..| +-+ ++.+|. |+..+.|+++ ++|+++.||..+.+| .
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~-V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGC-LVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 45678999999999999999999876 445 899999 8888887653 689999999876432 2
Q ss_pred CcEEEec
Q 032721 125 ADAIFMK 131 (135)
Q Consensus 125 ~D~~~l~ 131 (135)
-|++++-
T Consensus 195 FD~VFID 201 (278)
T PLN02476 195 YDFAFVD 201 (278)
T ss_pred CCEEEEC
Confidence 3888763
No 179
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.36 E-value=9.1e-05 Score=53.14 Aligned_cols=67 Identities=21% Similarity=0.305 Sum_probs=52.5
Q ss_pred CCcceEEeecCCCCHHHHHHHHHCCC-CCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCCCC---------CC
Q 032721 64 KGVKRLVDVGGSAGDCLRMILQKHPF-ICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP---------AA 125 (135)
Q Consensus 64 ~~~~~vvDvGgG~G~~~~~l~~~~p~-l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~~p---------~~ 125 (135)
.+.++||+||+++|.-+..+++..|. .+ ++.+|. |+..+.|+++ ++|+++.||..+.+| ..
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~-i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGK-ITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSE-EEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccce-EEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 45689999999999999999999885 56 999999 8888887653 689999999865432 23
Q ss_pred cEEEec
Q 032721 126 DAIFMK 131 (135)
Q Consensus 126 D~~~l~ 131 (135)
|++++-
T Consensus 123 D~VFiD 128 (205)
T PF01596_consen 123 DFVFID 128 (205)
T ss_dssp EEEEEE
T ss_pred eEEEEc
Confidence 888864
No 180
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.36 E-value=0.00087 Score=51.54 Aligned_cols=64 Identities=20% Similarity=0.220 Sum_probs=51.7
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCCCCeeEEeechHHHHhCCCCCCcEEEecCCCCCCC-C--CcEEEec
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIP-A--ADAIFMK 131 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~p~~~~~a~~~~rv~~~~gd~~~~~p-~--~D~~~l~ 131 (135)
+..++||||+++|.++..++++ +.+ ++.+|...+-......++|+++.+|-|...| . .|.++.-
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~r--G~~-V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcD 277 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRR--GMF-VTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCD 277 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHc--CCE-EEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEe
Confidence 4579999999999999999998 457 9999986666666667899999999988765 2 3777654
No 181
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.33 E-value=0.00063 Score=51.11 Aligned_cols=68 Identities=22% Similarity=0.261 Sum_probs=54.2
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCC--CCeeEEeec-hHHHHhCCCC------CC-cEEEecCCCCC------CCCCcEE
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPF--ICEGINFDL-PEVVAEAPSI------PG-VTHIGGDMFKS------IPAADAI 128 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~--l~~~~~~D~-p~~~~~a~~~------~r-v~~~~gd~~~~------~p~~D~~ 128 (135)
..-+||||.||+|.+...++..+|. .+ +.+.|. |.-++..++. .. ++|..+|.|+. .|..+++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~-i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDS-ILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCce-EEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 4579999999999999999999998 55 999998 7777766542 44 49999999976 2445888
Q ss_pred Eeccc
Q 032721 129 FMKVH 133 (135)
Q Consensus 129 ~l~~v 133 (135)
+.+-+
T Consensus 214 iVsGL 218 (311)
T PF12147_consen 214 IVSGL 218 (311)
T ss_pred EEecc
Confidence 87654
No 182
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.32 E-value=0.0003 Score=48.98 Aligned_cols=69 Identities=16% Similarity=-0.011 Sum_probs=43.1
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCCCCeeEEeechHHHHhCCCC---------CCcEEEecCCCCCC-----C--CCcEE
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPFICEGINFDLPEVVAEAPSI---------PGVTHIGGDMFKSI-----P--AADAI 128 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~p~~~~~a~~~---------~rv~~~~gd~~~~~-----p--~~D~~ 128 (135)
+..+|+++|||+|..+..+++..+..+ +++-|.+++++..+.+ .++++...|+-++. + ..|++
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~-Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAAR-VVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SE-EEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred CCceEEEECCccchhHHHHHhccCCce-EEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 347999999999999999999876667 9999997677654321 57888888886532 2 24888
Q ss_pred EecccC
Q 032721 129 FMKVHH 134 (135)
Q Consensus 129 ~l~~vl 134 (135)
+.+-|+
T Consensus 124 lasDv~ 129 (173)
T PF10294_consen 124 LASDVL 129 (173)
T ss_dssp EEES--
T ss_pred EEeccc
Confidence 887765
No 183
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.15 E-value=0.00078 Score=54.47 Aligned_cols=52 Identities=15% Similarity=0.154 Sum_probs=41.2
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhC-CC-----CCCcEEEecCC
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEA-PS-----IPGVTHIGGDM 118 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a-~~-----~~rv~~~~gd~ 118 (135)
...+||||||.|.++..+++++|+.. ++++|. ...+..+ ++ ..++.++.+|+
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~-~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~ 406 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDAL-FIGVEVYLNGVANVLKLAGEQNITNFLLFPNNL 406 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCC-EEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 47899999999999999999999999 999998 4444332 21 25677777765
No 184
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.13 E-value=0.00042 Score=51.00 Aligned_cols=65 Identities=32% Similarity=0.418 Sum_probs=49.9
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC----------CCcEEEecCCCC---CCCC--CcEE
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI----------PGVTHIGGDMFK---SIPA--ADAI 128 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~----------~rv~~~~gd~~~---~~p~--~D~~ 128 (135)
+.++||=||||.|..+.++++..+..+ ++++|+ |.+++.+++. +|++++.+|-+. ..+. -|++
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~-i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVES-ITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SE-EEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcce-EEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 568999999999999999987554556 999999 9999988652 689999988753 2334 3887
Q ss_pred Ee
Q 032721 129 FM 130 (135)
Q Consensus 129 ~l 130 (135)
++
T Consensus 155 i~ 156 (246)
T PF01564_consen 155 IV 156 (246)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 185
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.05 E-value=0.0013 Score=46.78 Aligned_cols=62 Identities=16% Similarity=0.132 Sum_probs=49.6
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCC-CCCCcEEEec
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IPAADAIFMK 131 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~-~p~~D~~~l~ 131 (135)
.++.|+|.|+|.++.-.+++ .-+ ++.+++ |...+.|.++ .+++.+.||..+- +..||++++-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~r-ViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicE 103 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AER-VIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICE 103 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hce-EEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHH
Confidence 57899999999998766665 334 999999 8888888775 6799999999765 6668988753
No 186
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.0013 Score=46.41 Aligned_cols=65 Identities=12% Similarity=0.245 Sum_probs=49.4
Q ss_pred cceEEeecCCCCHHHHHHHHHC-CCCCeeEEeec-hHHHHhCCC----C-CCcEEEecCCCCCC-CCC-cEEEec
Q 032721 66 VKRLVDVGGSAGDCLRMILQKH-PFICEGINFDL-PEVVAEAPS----I-PGVTHIGGDMFKSI-PAA-DAIFMK 131 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~-p~l~~~~~~D~-p~~~~~a~~----~-~rv~~~~gd~~~~~-p~~-D~~~l~ 131 (135)
...+++||||+|..+..|++.. |+.. ....|+ |++++...+ + .+++.+..|+++.+ +.. |+.+++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~-~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfN 117 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQAL-YLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFN 117 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCce-EEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEEC
Confidence 4689999999999999888765 4555 778899 888876443 3 56888899998885 333 887764
No 187
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.00 E-value=0.00065 Score=53.08 Aligned_cols=63 Identities=11% Similarity=-0.028 Sum_probs=49.6
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCCCC---CCcEEEe
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP---AADAIFM 130 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~~p---~~D~~~l 130 (135)
.+|+|++||+|.++..++.+.+..+ +++.|. |.+++.++++ +.+++..+|..+-++ ..|++++
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~-V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~l 131 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEK-VTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDI 131 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEE
Confidence 5899999999999999999887556 999999 8999888754 456688888743222 2588876
No 188
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=96.85 E-value=0.0013 Score=47.68 Aligned_cols=68 Identities=18% Similarity=0.225 Sum_probs=54.6
Q ss_pred CCCcceEEeecCCCCHHHHHHHHHCC-CCCeeEEeec-hHHHHhCCCC-------CCcEEEe-cCCCCCC----CC-CcE
Q 032721 63 FKGVKRLVDVGGSAGDCLRMILQKHP-FICEGINFDL-PEVVAEAPSI-------PGVTHIG-GDMFKSI----PA-ADA 127 (135)
Q Consensus 63 ~~~~~~vvDvGgG~G~~~~~l~~~~p-~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~-gd~~~~~----p~-~D~ 127 (135)
.++.++|++||.+.|.-+..++..-| +-+ +|.+|+ |+..+.|+++ ++|+.+. ||..+.+ .. -|+
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~-l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDl 135 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGR-LTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDL 135 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCe-EEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence 45679999999999999999999999 666 999999 9999998864 6788888 5765432 22 388
Q ss_pred EEec
Q 032721 128 IFMK 131 (135)
Q Consensus 128 ~~l~ 131 (135)
+++-
T Consensus 136 iFID 139 (219)
T COG4122 136 VFID 139 (219)
T ss_pred EEEe
Confidence 8764
No 189
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=96.82 E-value=0.00093 Score=49.26 Aligned_cols=68 Identities=16% Similarity=0.157 Sum_probs=52.8
Q ss_pred CCCcceEEeecCCCCHHHHHHHHHCC-CCCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCCCC----------
Q 032721 63 FKGVKRLVDVGGSAGDCLRMILQKHP-FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP---------- 123 (135)
Q Consensus 63 ~~~~~~vvDvGgG~G~~~~~l~~~~p-~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~~p---------- 123 (135)
..+.++|++||.++|.-+..+++..| +.+ ++.+|. |+..+.|+++ ++|+++.||..+.+|
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~-v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~ 155 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGK-ILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHG 155 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCE-EEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCC
Confidence 34568999999999999999998875 556 999999 7777777642 789999999866432
Q ss_pred CCcEEEec
Q 032721 124 AADAIFMK 131 (135)
Q Consensus 124 ~~D~~~l~ 131 (135)
.-|++++-
T Consensus 156 ~fD~iFiD 163 (247)
T PLN02589 156 TFDFIFVD 163 (247)
T ss_pred cccEEEec
Confidence 23887763
No 190
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.82 E-value=0.0038 Score=52.40 Aligned_cols=76 Identities=16% Similarity=0.048 Sum_probs=54.8
Q ss_pred HHHHhccCCCC-CCcceEEeecCCCCHHHHHHHHHC------------------------------------------CC
Q 032721 53 MTSVLDGYDGF-KGVKRLVDVGGSAGDCLRMILQKH------------------------------------------PF 89 (135)
Q Consensus 53 ~~~~~~~~~~~-~~~~~vvDvGgG~G~~~~~l~~~~------------------------------------------p~ 89 (135)
+..++..-. | .+...++|-.||+|.++++.+... +.
T Consensus 178 Aaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~ 256 (702)
T PRK11783 178 AAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELP 256 (702)
T ss_pred HHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccC
Confidence 445555444 7 445799999999999999887631 12
Q ss_pred CCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCC-CC----CCcEEEe
Q 032721 90 ICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IP----AADAIFM 130 (135)
Q Consensus 90 l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~-~p----~~D~~~l 130 (135)
.+ ++++|+ +.+++.|+.+ +++++..+|+.+- .| ..|+++.
T Consensus 257 ~~-i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~Ivt 309 (702)
T PRK11783 257 SK-FYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVIS 309 (702)
T ss_pred ce-EEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEE
Confidence 35 899999 9999988764 4689999999764 22 1477765
No 191
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=96.80 E-value=0.0019 Score=45.30 Aligned_cols=75 Identities=21% Similarity=0.152 Sum_probs=49.5
Q ss_pred HHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCC--------eeEEeec-hHHHHhCCCC-------CCcEEEecCC
Q 032721 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFIC--------EGINFDL-PEVVAEAPSI-------PGVTHIGGDM 118 (135)
Q Consensus 55 ~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~--------~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~ 118 (135)
.++..-. |.+...|+|-=||+|.++++.+...++.. ++++.|. +.+++.++.+ ..+.+...|+
T Consensus 19 ~ll~la~-~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~ 97 (179)
T PF01170_consen 19 ALLNLAG-WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA 97 (179)
T ss_dssp HHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G
T ss_pred HHHHHhC-CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch
Confidence 3444444 66668999999999999998877666543 3789999 8999887754 4588999999
Q ss_pred CCC-CCC--CcEEEe
Q 032721 119 FKS-IPA--ADAIFM 130 (135)
Q Consensus 119 ~~~-~p~--~D~~~l 130 (135)
.+- .+. .|+++.
T Consensus 98 ~~l~~~~~~~d~Ivt 112 (179)
T PF01170_consen 98 RELPLPDGSVDAIVT 112 (179)
T ss_dssp GGGGGTTSBSCEEEE
T ss_pred hhcccccCCCCEEEE
Confidence 653 232 387764
No 192
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.74 E-value=0.0015 Score=46.69 Aligned_cols=68 Identities=21% Similarity=0.201 Sum_probs=48.3
Q ss_pred CCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCCCCC--CcEEEecc
Q 032721 64 KGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA--ADAIFMKV 132 (135)
Q Consensus 64 ~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~~p~--~D~~~l~~ 132 (135)
.+..+|+|.-||-|.++..+++..+... ++..|+ |..++..+++ .+|..+.+|..+-.+. +|-++|..
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~-V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l 177 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKR-VYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL 177 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSE-EEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccE-EEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC
Confidence 3457999999999999999999777777 999999 8888776542 6789999998665543 58888754
No 193
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.66 E-value=0.0051 Score=44.10 Aligned_cols=65 Identities=22% Similarity=0.319 Sum_probs=48.9
Q ss_pred HHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeechHHHHhCCCCCCcEEEecCCCCC
Q 032721 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKS 121 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~p~~~~~a~~~~rv~~~~gd~~~~ 121 (135)
..++.+.+.-+.+...|+|+|+.+|..++.++++-..-.+++++|+-++-. .+.|.++.+||+.+
T Consensus 33 L~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----~~~V~~iq~d~~~~ 97 (205)
T COG0293 33 LLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----IPGVIFLQGDITDE 97 (205)
T ss_pred HHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----CCCceEEeeeccCc
Confidence 445666665466778999999999999998888776532389999854433 24599999999865
No 194
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.66 E-value=0.0039 Score=43.41 Aligned_cols=67 Identities=21% Similarity=0.302 Sum_probs=51.8
Q ss_pred cHHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCC-CCCeeEEeec-hHHHHhC-CCCCCcEEEecCCCC
Q 032721 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHP-FICEGINFDL-PEVVAEA-PSIPGVTHIGGDMFK 120 (135)
Q Consensus 52 ~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p-~l~~~~~~D~-p~~~~~a-~~~~rv~~~~gd~~~ 120 (135)
.++.+++.++ +++..-|+++|.|||.+..+|+++.- .-. .+.++. ++-.... +..+.+.++.||.|.
T Consensus 36 lA~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~-L~~iE~~~dF~~~L~~~~p~~~ii~gda~~ 105 (194)
T COG3963 36 LARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPES-LTAIEYSPDFVCHLNQLYPGVNIINGDAFD 105 (194)
T ss_pred HHHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccc-eEEEEeCHHHHHHHHHhCCCccccccchhh
Confidence 4677888887 88888999999999999999998643 344 777777 6655544 345788899999874
No 195
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.66 E-value=0.0009 Score=47.95 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=28.4
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
..++|||||.|.++..|...+|+.- +.++++
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtL-iLGmEI 92 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTL-ILGMEI 92 (249)
T ss_pred ceEEeeccCccchhhhccccCccce-eeeehh
Confidence 5799999999999999999999988 888876
No 196
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.62 E-value=0.0055 Score=46.55 Aligned_cols=65 Identities=22% Similarity=0.195 Sum_probs=54.0
Q ss_pred HHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-----CCcEEEecCCC
Q 032721 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMF 119 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-----~rv~~~~gd~~ 119 (135)
..++++.+. ..+...+||.=+|.|..+.+++++.|+.+ ++++|. |.+++.+++. .|++++.++|-
T Consensus 9 l~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~-vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~ 79 (305)
T TIGR00006 9 LDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGR-LIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFA 79 (305)
T ss_pred HHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHH
Confidence 356777765 55557999999999999999999988877 999999 9999887653 58999999885
No 197
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.60 E-value=0.0048 Score=46.47 Aligned_cols=67 Identities=19% Similarity=0.114 Sum_probs=49.9
Q ss_pred ceEEeecCCCCH----HHHHHHHHCC----CCCeeEEeec-hHHHHhCCCC-----------------------------
Q 032721 67 KRLVDVGGSAGD----CLRMILQKHP----FICEGINFDL-PEVVAEAPSI----------------------------- 108 (135)
Q Consensus 67 ~~vvDvGgG~G~----~~~~l~~~~p----~l~~~~~~D~-p~~~~~a~~~----------------------------- 108 (135)
-+|...||+||. ++..+.+..+ +.+ +++.|+ +.+++.|++.
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~-I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWK-VFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcE-EEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 699999999994 5555555443 345 999999 8888776431
Q ss_pred --------CCcEEEecCCCCC-CC--C-CcEEEecccC
Q 032721 109 --------PGVTHIGGDMFKS-IP--A-ADAIFMKVHH 134 (135)
Q Consensus 109 --------~rv~~~~gd~~~~-~p--~-~D~~~l~~vl 134 (135)
.+|+|..+|.+++ .| . -|+|++++||
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvl 233 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVM 233 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHH
Confidence 4578999999985 44 2 3999999986
No 198
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=96.58 E-value=0.0019 Score=51.79 Aligned_cols=56 Identities=27% Similarity=0.343 Sum_probs=45.1
Q ss_pred CCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEec---CCCCC
Q 032721 63 FKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGG---DMFKS 121 (135)
Q Consensus 63 ~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~g---d~~~~ 121 (135)
.+..+.++|+-||||.++.++++... + ++++++ |+.++.|+.+ .+.+|+.| |.|.+
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~~--~-ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~s 446 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGVK--R-VIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPS 446 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcccc--c-eeeeecChhhcchhhhcchhcCccceeeeecchhhccch
Confidence 44558999999999999999988644 4 889988 9999888764 68999998 55544
No 199
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.0055 Score=44.13 Aligned_cols=68 Identities=21% Similarity=0.169 Sum_probs=48.9
Q ss_pred CCCcceEEeecCCCCHHHHHHHHHCCC--CCeeEEeec-hHHHHhCCCC----------------CCcEEEecCCCCCCC
Q 032721 63 FKGVKRLVDVGGSAGDCLRMILQKHPF--ICEGINFDL-PEVVAEAPSI----------------PGVTHIGGDMFKSIP 123 (135)
Q Consensus 63 ~~~~~~vvDvGgG~G~~~~~l~~~~p~--l~~~~~~D~-p~~~~~a~~~----------------~rv~~~~gd~~~~~p 123 (135)
+.+..++||||+|+|.++..++..-.. .. .+++|. |++++.++++ .++.++.||-....+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~-~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~ 158 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGN-VHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA 158 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCcc-ccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence 344578999999999999888754433 22 478898 9999887653 468899999876644
Q ss_pred C-C--cEEEec
Q 032721 124 A-A--DAIFMK 131 (135)
Q Consensus 124 ~-~--D~~~l~ 131 (135)
. + |.+...
T Consensus 159 e~a~YDaIhvG 169 (237)
T KOG1661|consen 159 EQAPYDAIHVG 169 (237)
T ss_pred ccCCcceEEEc
Confidence 3 3 777643
No 200
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.53 E-value=0.0024 Score=41.12 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=25.6
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
+...+||||||.|.+..-|.++ ..+ +.++|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E--Gy~-G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE--GYP-GWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC--CCC-cccccc
Confidence 4678999999999998888776 556 888884
No 201
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.52 E-value=0.0055 Score=46.60 Aligned_cols=65 Identities=26% Similarity=0.249 Sum_probs=49.3
Q ss_pred HHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-----CCcEEEecCCC
Q 032721 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMF 119 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-----~rv~~~~gd~~ 119 (135)
..++++.+. ..+...+||.=-|.|..+.+++++.|+.+ ++++|. |.+++.|++. +|+.++.++|-
T Consensus 9 l~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~-li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~ 79 (310)
T PF01795_consen 9 LKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGR-LIGIDRDPEALERAKERLKKFDDRFIFIHGNFS 79 (310)
T ss_dssp HHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-E-EEEEES-HHHHHHHHCCTCCCCTTEEEEES-GG
T ss_pred HHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCe-EEEecCCHHHHHHHHHHHhhccceEEEEeccHH
Confidence 456777775 56668999999999999999999999988 999999 9999877643 78999999873
No 202
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.52 E-value=0.003 Score=45.46 Aligned_cols=93 Identities=14% Similarity=0.187 Sum_probs=48.5
Q ss_pred cccccccCchHHHHHHHHHh----ccccccHHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeechHHH
Q 032721 27 AYSYYGKKPEMNGLMRKAMS----GVSVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDLPEVV 102 (135)
Q Consensus 27 ~~e~~~~~~~~~~~f~~~m~----~~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~p~~~ 102 (135)
.++.+.++|+....|+++-. .+-..-.+.+++.+..-++...|.|+|||.+.++..+.. ..+ +.-+|+-..
T Consensus 30 A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~-V~SfDLva~- 104 (219)
T PF05148_consen 30 ALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHK-VHSFDLVAP- 104 (219)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-------EEEEESS-S-
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---Cce-EEEeeccCC-
Confidence 34556778876655555444 444333455555554233446999999999999977643 345 888997321
Q ss_pred HhCCCCCCcEEEecCCCCCCC--C--CcEEEecc
Q 032721 103 AEAPSIPGVTHIGGDMFKSIP--A--ADAIFMKV 132 (135)
Q Consensus 103 ~~a~~~~rv~~~~gd~~~~~p--~--~D~~~l~~ 132 (135)
+++ +.+.|+ ..+| . .|+++++-
T Consensus 105 -----n~~--Vtacdi-a~vPL~~~svDv~VfcL 130 (219)
T PF05148_consen 105 -----NPR--VTACDI-ANVPLEDESVDVAVFCL 130 (219)
T ss_dssp -----STT--EEES-T-TS-S--TT-EEEEEEES
T ss_pred -----CCC--EEEecC-ccCcCCCCceeEEEEEh
Confidence 233 556888 4455 3 28887753
No 203
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=96.52 E-value=0.0023 Score=46.10 Aligned_cols=93 Identities=13% Similarity=0.203 Sum_probs=54.7
Q ss_pred HHHHHHHHHhccccccHHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------C
Q 032721 37 MNGLMRKAMSGVSVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------P 109 (135)
Q Consensus 37 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~ 109 (135)
....++.-|..+.+.....+-.-. .-+.-..+++||||||.--.-. .--|..+ +|++|. |.+-+.+.+. .
T Consensus 49 ft~~yne~~~~ykrelFs~i~~~~-gk~~K~~vLEvgcGtG~Nfkfy-~~~p~~s-vt~lDpn~~mee~~~ks~~E~k~~ 125 (252)
T KOG4300|consen 49 FTSIYNEIADSYKRELFSGIYYFL-GKSGKGDVLEVGCGTGANFKFY-PWKPINS-VTCLDPNEKMEEIADKSAAEKKPL 125 (252)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHh-cccCccceEEecccCCCCcccc-cCCCCce-EEEeCCcHHHHHHHHHHHhhccCc
Confidence 445677777777554333322111 1233467899999999743211 1124455 999999 7777765432 4
Q ss_pred CcE-EEecCCCCCCC---CC--cEEEeccc
Q 032721 110 GVT-HIGGDMFKSIP---AA--DAIFMKVH 133 (135)
Q Consensus 110 rv~-~~~gd~~~~~p---~~--D~~~l~~v 133 (135)
.++ |+.++- +.+| .+ |+++..-+
T Consensus 126 ~~~~fvva~g-e~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 126 QVERFVVADG-ENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred ceEEEEeech-hcCcccccCCeeeEEEEEE
Confidence 566 777766 4455 33 88775544
No 204
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.42 E-value=0.0036 Score=45.21 Aligned_cols=67 Identities=16% Similarity=0.106 Sum_probs=48.8
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHh---CCC---CCCcEEEecCCCCC--CCC-CcEEEeccc
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAE---APS---IPGVTHIGGDMFKS--IPA-ADAIFMKVH 133 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~---a~~---~~rv~~~~gd~~~~--~p~-~D~~~l~~v 133 (135)
..+++|||.|.|.=++-++-.+|+++ +|++|. ..-+.- +.. .++++++.+..-+- .+. .|+++.|.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~-vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLK-VTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCc-EEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc
Confidence 47999999999999998889999999 999996 443332 221 26788887766221 223 788887754
No 205
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.38 E-value=0.0023 Score=46.39 Aligned_cols=54 Identities=24% Similarity=0.299 Sum_probs=46.9
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCC
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS 121 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~ 121 (135)
+...|+|.=||-|.-.+..+.++|. ++.+|+ |.-+..|+.+ +||+|+.|||++-
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~---VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~ 155 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY---VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDL 155 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe---EEEEeccHHHHHHHhccceeecCCceeEEEechHHHH
Confidence 5578999999999999999999887 888998 8888888875 7999999999864
No 206
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.34 E-value=0.0039 Score=45.95 Aligned_cols=67 Identities=15% Similarity=0.126 Sum_probs=49.2
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCC-----CCCcEEEecCCCCCCCC--CcEEEecc
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPS-----IPGVTHIGGDMFKSIPA--ADAIFMKV 132 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~-----~~rv~~~~gd~~~~~p~--~D~~~l~~ 132 (135)
...+|+|||||.-=++.-.....|+.. .+++|+ ...++.... ..+.+....|.+...|. +|+.++=.
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~-Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK 179 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGAT-YIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLK 179 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-E-EEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET
T ss_pred CCchhhhhhccCCceehhhcccCCCcE-EEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHH
Confidence 368999999999999998888888998 999999 767666543 25677777899998665 59877643
No 207
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.32 E-value=0.0055 Score=42.60 Aligned_cols=47 Identities=21% Similarity=0.320 Sum_probs=34.6
Q ss_pred HHHhccCCCCC--CcceEEeecCCCCHHHHHHHHHC-CCCCeeEEeechHH
Q 032721 54 TSVLDGYDGFK--GVKRLVDVGGSAGDCLRMILQKH-PFICEGINFDLPEV 101 (135)
Q Consensus 54 ~~~~~~~~~~~--~~~~vvDvGgG~G~~~~~l~~~~-p~l~~~~~~D~p~~ 101 (135)
.++.+.++-+. +..+++|+||++|.++..++++. +..+ ++++|+...
T Consensus 10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~-v~avDl~~~ 59 (181)
T PF01728_consen 10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGR-VVAVDLGPM 59 (181)
T ss_dssp HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEE-EEEEESSST
T ss_pred HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccce-EEEEecccc
Confidence 34556665232 34899999999999999999988 5566 999999544
No 208
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.27 E-value=0.0036 Score=44.16 Aligned_cols=65 Identities=17% Similarity=0.124 Sum_probs=46.6
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCC------CCCCcEEEecCCCCC-CCC-CcEEEeccc
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAP------SIPGVTHIGGDMFKS-IPA-ADAIFMKVH 133 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~------~~~rv~~~~gd~~~~-~p~-~D~~~l~~v 133 (135)
+++|||.|.|.=++-++=.+|+++ ++++|. ..-+.-.+ ..++++.+.+..-+. .+. .|+++.|.+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~-~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQ-VTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAV 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSE-EEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESS
T ss_pred eEEecCCCCCChhHHHHHhCCCCc-EEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehh
Confidence 799999999999999999999999 999997 43332221 126788888877442 333 499988765
No 209
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.22 E-value=0.008 Score=43.47 Aligned_cols=64 Identities=16% Similarity=0.223 Sum_probs=51.3
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCCC-CC--CcEEEec
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSI-PA--ADAIFMK 131 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~~-p~--~D~~~l~ 131 (135)
..+.||||-.+.+.+.+.+.+|... ++..|. +..++.|.++ ++++...+|-+..+ +. .|+++..
T Consensus 18 ~~iaDIGsDHAYLp~~Lv~~~~~~~-~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIA 92 (226)
T COG2384 18 ARIADIGSDHAYLPIYLVKNNPAST-AVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIA 92 (226)
T ss_pred CceeeccCchhHhHHHHHhcCCcce-EEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEe
Confidence 3499999999999999999999999 999998 6666665432 78999999988874 43 3776653
No 210
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.17 E-value=0.0028 Score=44.67 Aligned_cols=63 Identities=19% Similarity=0.193 Sum_probs=46.5
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCCC------CC-CcEEEe
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSI------PA-ADAIFM 130 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~~------p~-~D~~~l 130 (135)
..+++|+=+|+|.++.+.+++.-. + ++.+|. +..+...+++ .+++.+.+|.+..+ .. .|+|++
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA~-~-v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGAK-S-VVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT-S-E-EEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCeEEEcCCccCccHHHHHhcCCC-e-EEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 379999999999999999887532 4 999999 8888777654 46888889976542 12 388876
No 211
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.10 E-value=0.017 Score=43.76 Aligned_cols=65 Identities=28% Similarity=0.265 Sum_probs=55.1
Q ss_pred HHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-----CCcEEEecCC
Q 032721 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDM 118 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-----~rv~~~~gd~ 118 (135)
..++++.+. .......+|.==|.|..+.++++++|.+.+.+++|. |.+++.|++. +|+.++.++|
T Consensus 12 l~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F 82 (314)
T COG0275 12 LNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNF 82 (314)
T ss_pred HHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcH
Confidence 355667775 555689999999999999999999998766999999 9999998763 6999999887
No 212
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.95 E-value=0.0029 Score=48.92 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=50.0
Q ss_pred cCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hH---HHHhCCCC---CCcEEEecCCCCC---CCCCcEE
Q 032721 59 GYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PE---VVAEAPSI---PGVTHIGGDMFKS---IPAADAI 128 (135)
Q Consensus 59 ~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~---~~~~a~~~---~rv~~~~gd~~~~---~p~~D~~ 128 (135)
..+.|+. ++|+|||-|.|.-+.++-.-+|+++.+++++. |. ++.....+ .+......|+-.+ +|.+|.|
T Consensus 108 ~~~dfap-qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~y 186 (484)
T COG5459 108 RVPDFAP-QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLY 186 (484)
T ss_pred hCCCcCc-chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCcccee
Confidence 3344543 78999999999999999999999986777776 32 22222221 3344455566444 6777888
Q ss_pred EecccC
Q 032721 129 FMKVHH 134 (135)
Q Consensus 129 ~l~~vl 134 (135)
.+.-++
T Consensus 187 tl~i~~ 192 (484)
T COG5459 187 TLAIVL 192 (484)
T ss_pred ehhhhh
Confidence 775443
No 213
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=95.87 E-value=0.011 Score=44.63 Aligned_cols=67 Identities=22% Similarity=0.202 Sum_probs=46.3
Q ss_pred CCCcceEEeecCCCCHHHHHHHHH-------CCCCCeeEEeec-hHHHHhCCCC--------CCcEEEecCCCCC--CC-
Q 032721 63 FKGVKRLVDVGGSAGDCLRMILQK-------HPFICEGINFDL-PEVVAEAPSI--------PGVTHIGGDMFKS--IP- 123 (135)
Q Consensus 63 ~~~~~~vvDvGgG~G~~~~~l~~~-------~p~l~~~~~~D~-p~~~~~a~~~--------~rv~~~~gd~~~~--~p- 123 (135)
-....+|+|-.||+|.++.++.+. .+..+ +.++|+ +.++..++.+ .......+|.+.. ..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~-i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~ 122 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEIN-IYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIK 122 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEE-EEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTS
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccce-eEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccc
Confidence 445578999999999999998874 46777 999999 7777665421 3345778898866 22
Q ss_pred --CCcEEEe
Q 032721 124 --AADAIFM 130 (135)
Q Consensus 124 --~~D~~~l 130 (135)
..|++++
T Consensus 123 ~~~~D~ii~ 131 (311)
T PF02384_consen 123 NQKFDVIIG 131 (311)
T ss_dssp T--EEEEEE
T ss_pred ccccccccC
Confidence 2488875
No 214
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.85 E-value=0.023 Score=40.57 Aligned_cols=71 Identities=17% Similarity=0.146 Sum_probs=50.1
Q ss_pred CCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-----CCcEEEecCCCCCCCCCcEEEecccCC
Q 032721 63 FKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIPAADAIFMKVHHF 135 (135)
Q Consensus 63 ~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-----~rv~~~~gd~~~~~p~~D~~~l~~vl~ 135 (135)
+-..++|+|+|.|+|..+++.++.-.. . ++.-|. |..++..+-+ ..|.+...|..-+-|..|+++++.+++
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA~-~-v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy 153 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGAA-E-VVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFY 153 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhhH-H-HHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceec
Confidence 445689999999999999888876433 3 555566 6666655543 457888888766334469999887754
No 215
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.84 E-value=0.005 Score=47.61 Aligned_cols=59 Identities=22% Similarity=0.241 Sum_probs=41.8
Q ss_pred HHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecC
Q 032721 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGD 117 (135)
Q Consensus 54 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd 117 (135)
..+++.++ .++. .++|+=||.|.++..+++.... ++++|. +.+++.|+.+ ++++|+.++
T Consensus 187 ~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~~~---V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~ 252 (352)
T PF05958_consen 187 EQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKAKK---VIGVEIVEEAVEDARENAKLNGIDNVEFIRGD 252 (352)
T ss_dssp HHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCSSE---EEEEES-HHHHHHHHHHHHHTT--SEEEEE--
T ss_pred HHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhCCe---EEEeeCCHHHHHHHHHHHHHcCCCcceEEEee
Confidence 33445554 4333 7999999999999999987643 899998 8999888754 678888654
No 216
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=95.84 E-value=0.048 Score=40.88 Aligned_cols=91 Identities=19% Similarity=0.183 Sum_probs=65.7
Q ss_pred HHHHHHHhccccc----cHHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHC-CCCCeeEEeec-hHHHHhCCCC----
Q 032721 39 GLMRKAMSGVSVP----FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKH-PFICEGINFDL-PEVVAEAPSI---- 108 (135)
Q Consensus 39 ~~f~~~m~~~~~~----~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~-p~l~~~~~~D~-p~~~~~a~~~---- 108 (135)
+.+-.+|-..++. .+..|+..++ .....+|++-|.|+|.++.+++++- |.-+ +.-+|. ....+.|.+.
T Consensus 76 ELWTl~LphRTQI~Yt~Dia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGh-l~tfefH~~Ra~ka~eeFr~h 153 (314)
T KOG2915|consen 76 ELWTLALPHRTQILYTPDIAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGH-LYTFEFHETRAEKALEEFREH 153 (314)
T ss_pred HHhhhhccCcceEEecccHHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcc-eEEEEecHHHHHHHHHHHHHh
Confidence 4566777777764 3566777777 7777899999999999999999987 4445 888998 4455555432
Q ss_pred ---CCcEEEecCCCCC-CC----CCcEEEec
Q 032721 109 ---PGVTHIGGDMFKS-IP----AADAIFMK 131 (135)
Q Consensus 109 ---~rv~~~~gd~~~~-~p----~~D~~~l~ 131 (135)
+.+++..-|.-.. ++ .||+++|-
T Consensus 154 gi~~~vt~~hrDVc~~GF~~ks~~aDaVFLD 184 (314)
T KOG2915|consen 154 GIGDNVTVTHRDVCGSGFLIKSLKADAVFLD 184 (314)
T ss_pred CCCcceEEEEeecccCCccccccccceEEEc
Confidence 6788887777554 33 26888773
No 217
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.70 E-value=0.0085 Score=46.78 Aligned_cols=64 Identities=13% Similarity=0.047 Sum_probs=49.2
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCCCC----CCcEEEe
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP----AADAIFM 130 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~~p----~~D~~~l 130 (135)
-+|+|.-+|+|..++..+++.++.++++..|+ |.+++.++++ .++++..+|...-+. ..|++.+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdl 120 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDI 120 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEe
Confidence 47999999999999999998766555999999 9888887654 347777777754422 2477765
No 218
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.69 E-value=0.014 Score=47.42 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=40.0
Q ss_pred cceEEeecCCCCHHHHHHHHHCCC--------CCeeEEeec-hHHHHhCCCC----C--CcEEEecCCCC
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPF--------ICEGINFDL-PEVVAEAPSI----P--GVTHIGGDMFK 120 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~--------l~~~~~~D~-p~~~~~a~~~----~--rv~~~~gd~~~ 120 (135)
..+|+|.+||+|.++.+++++.+. .. ++++|+ +.++..++.+ . .++...+|++.
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~-i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~ 100 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELN-IYFADIDKTLLKRAKKLLGEFALLEINVINFNSLS 100 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceee-eeeechhHHHHHHHHHHHhhcCCCCceeeeccccc
Confidence 468999999999999999987763 34 799999 7777766532 2 35556666554
No 219
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.26 E-value=0.013 Score=40.18 Aligned_cols=66 Identities=20% Similarity=0.202 Sum_probs=46.5
Q ss_pred HHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCC
Q 032721 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS 121 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~ 121 (135)
.+.++..++ -.+..+.+|+|.|.|.+..+.++.. -.. .+++++ |..+..++-. .+.+|..-|+|+.
T Consensus 61 v~nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~-a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 61 VENVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRP-AVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV 134 (199)
T ss_pred HHHHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCc-CCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc
Confidence 445555554 3344899999999999988888865 445 888999 8777765421 5667777777654
No 220
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=95.20 E-value=0.025 Score=40.59 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=27.9
Q ss_pred CCcc-eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 64 KGVK-RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 64 ~~~~-~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.... +||+||+|||..+..+++++|+++ -.--|.
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~lP~l~-WqPSD~ 57 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQALPHLT-WQPSDP 57 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHCCCCE-EcCCCC
Confidence 3444 599999999999999999999988 544555
No 221
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=95.18 E-value=0.067 Score=39.96 Aligned_cols=89 Identities=15% Similarity=0.150 Sum_probs=52.0
Q ss_pred ccccccCchHHHHHHHHHhc----cccccHHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeechHHHH
Q 032721 28 YSYYGKKPEMNGLMRKAMSG----VSVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDLPEVVA 103 (135)
Q Consensus 28 ~e~~~~~~~~~~~f~~~m~~----~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~p~~~~ 103 (135)
++...++|+....|+++-.. |-..-...+++.+..-+....|.|+|||-+.++. .-..+ +..+|+-.+
T Consensus 139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~-----~~~~k-V~SfDL~a~-- 210 (325)
T KOG3045|consen 139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS-----SERHK-VHSFDLVAV-- 210 (325)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhh-----ccccc-eeeeeeecC--
Confidence 34455777666666555444 3333345566555423455789999999999887 11223 778887322
Q ss_pred hCCCCCCcEEEecCCCCCCCC----CcEEEec
Q 032721 104 EAPSIPGVTHIGGDMFKSIPA----ADAIFMK 131 (135)
Q Consensus 104 ~a~~~~rv~~~~gd~~~~~p~----~D~~~l~ 131 (135)
+-.++++|+-. +|- .|+.+++
T Consensus 211 ------~~~V~~cDm~~-vPl~d~svDvaV~C 235 (325)
T KOG3045|consen 211 ------NERVIACDMRN-VPLEDESVDVAVFC 235 (325)
T ss_pred ------CCceeeccccC-CcCccCcccEEEee
Confidence 22345677744 442 3777664
No 222
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=94.71 E-value=0.086 Score=39.19 Aligned_cols=65 Identities=17% Similarity=0.114 Sum_probs=42.9
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCCCCcEEEecCCCCCCCC-CcEEEecccC
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPA-ADAIFMKVHH 134 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~~rv~~~~gd~~~~~p~-~D~~~l~~vl 134 (135)
..+++|||.|.|.....++..+.+ +++=+. +.|....++ .+++.+..|=+..-+. -|+|.+-|+|
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~~---v~aTE~S~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvL 161 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFKE---VYATEASPPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVL 161 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcce---EEeecCCHHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhh
Confidence 478999999999999999998887 555565 556554433 3344443332333232 4888877765
No 223
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.63 E-value=0.11 Score=40.73 Aligned_cols=78 Identities=15% Similarity=0.060 Sum_probs=56.7
Q ss_pred HHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCC----Ce----------------------------------eE
Q 032721 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFI----CE----------------------------------GI 94 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l----~~----------------------------------~~ 94 (135)
+..++..-. |.....++|==||+|.++++.+...+++ .| .+
T Consensus 180 AaAil~lag-w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~ 258 (381)
T COG0116 180 AAAILLLAG-WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY 258 (381)
T ss_pred HHHHHHHcC-CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence 344444444 7776899999999999999998887532 12 56
Q ss_pred Eeec-hHHHHhCCCC-------CCcEEEecCCCCC-CC-C-CcEEEec
Q 032721 95 NFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IP-A-ADAIFMK 131 (135)
Q Consensus 95 ~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~-~p-~-~D~~~l~ 131 (135)
++|+ +.+++.|+.+ +.|+|..+|+-.- -| . .|+++..
T Consensus 259 G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~N 306 (381)
T COG0116 259 GSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISN 306 (381)
T ss_pred EecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeC
Confidence 9999 9999998865 5699999998432 12 2 3887753
No 224
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.54 E-value=0.041 Score=43.82 Aligned_cols=71 Identities=20% Similarity=0.221 Sum_probs=51.5
Q ss_pred HhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCCC---CC--
Q 032721 56 VLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS---IP-- 123 (135)
Q Consensus 56 ~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~~---~p-- 123 (135)
+++..+ ..+..+++|+=||.|.++..++++. .+ ++++|+ |++++.|+++ .+++|+.+|..+- ..
T Consensus 285 a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~~--~~-V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~ 360 (432)
T COG2265 285 ALEWLE-LAGGERVLDLYCGVGTFGLPLAKRV--KK-VHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEG 360 (432)
T ss_pred HHHHHh-hcCCCEEEEeccCCChhhhhhcccC--CE-EEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcccc
Confidence 334443 4455789999999999999999543 23 999999 9999888764 5699999987543 21
Q ss_pred -CCcEEEe
Q 032721 124 -AADAIFM 130 (135)
Q Consensus 124 -~~D~~~l 130 (135)
..|++++
T Consensus 361 ~~~d~Vvv 368 (432)
T COG2265 361 YKPDVVVV 368 (432)
T ss_pred CCCCEEEE
Confidence 2377765
No 225
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=94.17 E-value=0.12 Score=39.63 Aligned_cols=65 Identities=11% Similarity=0.103 Sum_probs=42.6
Q ss_pred HHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHC----CCCCeeEEeec-hHHHHhCCC------CCCcEE--EecCCC
Q 032721 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKH----PFICEGINFDL-PEVVAEAPS------IPGVTH--IGGDMF 119 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~----p~l~~~~~~D~-p~~~~~a~~------~~rv~~--~~gd~~ 119 (135)
+..|++.++ ....++|+|||+|.=...|+++. ...+ .+.+|+ .+.++.+.. .+.+++ +.|||.
T Consensus 67 ~~~Ia~~i~---~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~-Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~ 142 (319)
T TIGR03439 67 SSDIAASIP---SGSMLVELGSGNLRKVGILLEALERQKKSVD-YYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYD 142 (319)
T ss_pred HHHHHHhcC---CCCEEEEECCCchHHHHHHHHHHHhcCCCce-EEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHH
Confidence 345666554 33589999999997555444433 3456 899999 567666532 255655 788996
Q ss_pred CC
Q 032721 120 KS 121 (135)
Q Consensus 120 ~~ 121 (135)
+.
T Consensus 143 ~~ 144 (319)
T TIGR03439 143 DG 144 (319)
T ss_pred HH
Confidence 64
No 226
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=93.95 E-value=0.043 Score=42.97 Aligned_cols=78 Identities=18% Similarity=0.337 Sum_probs=51.9
Q ss_pred HhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec---hHHHHhCCC-------------CCCcEEEecCCC
Q 032721 56 VLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL---PEVVAEAPS-------------IPGVTHIGGDMF 119 (135)
Q Consensus 56 ~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~---p~~~~~a~~-------------~~rv~~~~gd~~ 119 (135)
+.+.+. .......+|+|+|-|.+...++.....-. -+++++ |.-+..... ...++++.|+|.
T Consensus 184 i~dEl~-~g~~D~F~DLGSGVGqlv~~~aa~a~~k~-svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~ 261 (419)
T KOG3924|consen 184 IVDELK-LGPADVFMDLGSGVGQLVCFVAAYAGCKK-SVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL 261 (419)
T ss_pred HHHHhc-cCCCCcccCCCcccchhhHHHHHhhcccc-ccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence 333443 55668999999999998887777554444 444443 433332211 145889999998
Q ss_pred CC------CCCCcEEEecccCC
Q 032721 120 KS------IPAADAIFMKVHHF 135 (135)
Q Consensus 120 ~~------~p~~D~~~l~~vl~ 135 (135)
.+ ++.|+++++.++.|
T Consensus 262 ~~~~v~eI~~eatvi~vNN~~F 283 (419)
T KOG3924|consen 262 DPKRVTEIQTEATVIFVNNVAF 283 (419)
T ss_pred CHHHHHHHhhcceEEEEecccC
Confidence 65 35689999999876
No 227
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=93.66 E-value=0.069 Score=39.86 Aligned_cols=56 Identities=20% Similarity=0.325 Sum_probs=35.1
Q ss_pred CcceEEeecCCCC---HHHHHHHHHCCCCCeeEEeec-hHHHHhCCC----CCC--cEEEecCCCCC
Q 032721 65 GVKRLVDVGGSAG---DCLRMILQKHPFICEGINFDL-PEVVAEAPS----IPG--VTHIGGDMFKS 121 (135)
Q Consensus 65 ~~~~vvDvGgG~G---~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~----~~r--v~~~~gd~~~~ 121 (135)
+...++|||||-- +.-.-..+..|+.+ ++-+|. |-++..++. +++ ..++.+|+.++
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aR-VVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p 133 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDAR-VVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDP 133 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-E-EEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-H
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCce-EEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCH
Confidence 5689999999864 55555566789999 999999 888888764 245 88999999865
No 228
>PRK10742 putative methyltransferase; Provisional
Probab=93.14 E-value=0.17 Score=37.42 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=52.9
Q ss_pred HHHHhccCCCCCCcc--eEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHh-------CCC----C----CCcEEE
Q 032721 53 MTSVLDGYDGFKGVK--RLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAE-------APS----I----PGVTHI 114 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~--~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~-------a~~----~----~rv~~~ 114 (135)
.+.++++.. ..+.. +|+|.=+|+|..+..++.. +.+ ++.+|. |.+... +.. . .|++++
T Consensus 75 ~~~l~kAvg-lk~g~~p~VLD~TAGlG~Da~~las~--G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~ 150 (250)
T PRK10742 75 GEAVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLI 150 (250)
T ss_pred ccHHHHHhC-CCCCCCCEEEECCCCccHHHHHHHHc--CCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEE
Confidence 356777775 55544 9999999999999999988 667 999998 544332 210 1 468888
Q ss_pred ecCCCCC---CCC-CcEEEe
Q 032721 115 GGDMFKS---IPA-ADAIFM 130 (135)
Q Consensus 115 ~gd~~~~---~p~-~D~~~l 130 (135)
.+|..+- .+. .|+|++
T Consensus 151 ~~da~~~L~~~~~~fDVVYl 170 (250)
T PRK10742 151 HASSLTALTDITPRPQVVYL 170 (250)
T ss_pred eCcHHHHHhhCCCCCcEEEE
Confidence 8887654 333 499886
No 229
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=92.80 E-value=0.38 Score=39.36 Aligned_cols=95 Identities=20% Similarity=0.212 Sum_probs=61.0
Q ss_pred ccccccCchHHHHHHHHHhccccccHHHHhccCCCCCC--cceEEeecCCCCHHHHHHHHHCCCCC---eeEEeec-hHH
Q 032721 28 YSYYGKKPEMNGLMRKAMSGVSVPFMTSVLDGYDGFKG--VKRLVDVGGSAGDCLRMILQKHPFIC---EGINFDL-PEV 101 (135)
Q Consensus 28 ~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~--~~~vvDvGgG~G~~~~~l~~~~p~l~---~~~~~D~-p~~ 101 (135)
||-.++||-.-..|++|.. .++++..+.-+. ...|+-+|+|.|-+..+.++.-.... +.++++- |.+
T Consensus 335 YetFEkD~VKY~~Yq~Ai~-------~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNA 407 (649)
T KOG0822|consen 335 YETFEKDPVKYDQYQQAIL-------KALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNA 407 (649)
T ss_pred hhhhhccchHHHHHHHHHH-------HHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcch
Confidence 5556677766666666553 356666552222 56788999999988777666443322 2777776 766
Q ss_pred HHhCCCC------CCcEEEecCCCCCCC---CCcEEE
Q 032721 102 VAEAPSI------PGVTHIGGDMFKSIP---AADAIF 129 (135)
Q Consensus 102 ~~~a~~~------~rv~~~~gd~~~~~p---~~D~~~ 129 (135)
+-..... .+|+.+.+|+-+..| ++|+++
T Consensus 408 ivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~V 444 (649)
T KOG0822|consen 408 IVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIV 444 (649)
T ss_pred hhhhhhhchhhhcCeeEEEeccccccCCchhhccchH
Confidence 6544321 689999999976543 268764
No 230
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=92.76 E-value=0.13 Score=37.97 Aligned_cols=63 Identities=24% Similarity=0.267 Sum_probs=48.6
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC--------CCcEEEecCCCCC---CCC-C-cEEE
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI--------PGVTHIGGDMFKS---IPA-A-DAIF 129 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~--------~rv~~~~gd~~~~---~p~-~-D~~~ 129 (135)
+..+|+|.+.|-|..+++.+++-. .. ++-++- |.|++.|..+ .+|+.+-||.++- ++. . |+++
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA-~~-VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGA-IH-VITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCC-cE-EEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 457999999999999999998743 24 677777 9999998765 4689999998765 333 2 7765
No 231
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=92.63 E-value=0.12 Score=39.70 Aligned_cols=80 Identities=15% Similarity=0.111 Sum_probs=48.0
Q ss_pred HHHHHHHHHhccccccHHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-------
Q 032721 37 MNGLMRKAMSGVSVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------- 108 (135)
Q Consensus 37 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------- 108 (135)
..+.|+-.+... .+...+.....-.+..+|||+|||-|.-+..-.... ++..+++|+ +..++.|+..
T Consensus 37 ~lR~fNNwvKs~---LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~ 111 (331)
T PF03291_consen 37 HLRNFNNWVKSV---LIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKR 111 (331)
T ss_dssp HHHHHHHHHHHH---HHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTS
T ss_pred HHHHHhHHHHHH---HHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccc
Confidence 345666655542 122233222101145799999999999887777753 334899999 7777776531
Q ss_pred ---------CCcEEEecCCCCC
Q 032721 109 ---------PGVTHIGGDMFKS 121 (135)
Q Consensus 109 ---------~rv~~~~gd~~~~ 121 (135)
-...++.+|.|..
T Consensus 112 ~~~~~~~~~f~a~f~~~D~f~~ 133 (331)
T PF03291_consen 112 NNSKQYRFDFIAEFIAADCFSE 133 (331)
T ss_dssp TT-HTSEECCEEEEEESTTCCS
T ss_pred cccccccccchhheeccccccc
Confidence 1356788888865
No 232
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=92.56 E-value=0.12 Score=37.40 Aligned_cols=68 Identities=16% Similarity=0.138 Sum_probs=41.8
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCC-----CCC-cEEEecCCCCCCCC---CcEEEecccC
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPS-----IPG-VTHIGGDMFKSIPA---ADAIFMKVHH 134 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~-----~~r-v~~~~gd~~~~~p~---~D~~~l~~vl 134 (135)
+..+.+|.|+|.|.++..++..+ .+++-++|. +.-++.|++ ..+ .++....+-+-.|. -|++++-|++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 45899999999999999887654 333788888 888888873 233 33333333222453 3999998875
No 233
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=92.26 E-value=0.27 Score=38.28 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=38.4
Q ss_pred chHHHHHHHHHhccccccHHHHhccCCCCCCcceEEeecCCCCHHHHHHHHH----CC----CCCeeEEeechH
Q 032721 35 PEMNGLMRKAMSGVSVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQK----HP----FICEGINFDLPE 100 (135)
Q Consensus 35 ~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~----~p----~l~~~~~~D~p~ 100 (135)
|+..+.|.+..+.+- -++...+. -+....+|++|.|+|.++.-+++. +| .++ ..+++..+
T Consensus 52 pels~lFGella~~~----~~~wq~~g-~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~-~~iiE~s~ 119 (370)
T COG1565 52 PELSQLFGELLAEQF----LQLWQELG-RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALS-YYIIEPSP 119 (370)
T ss_pred hhHHHHHHHHHHHHH----HHHHHHhc-CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcce-EEEEecCH
Confidence 677777777665531 12223332 344568999999999987766654 45 345 88888733
No 234
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=92.23 E-value=0.11 Score=41.86 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=21.0
Q ss_pred CCcceEEeecCCCCHHHHHHHHHC
Q 032721 64 KGVKRLVDVGGSAGDCLRMILQKH 87 (135)
Q Consensus 64 ~~~~~vvDvGgG~G~~~~~l~~~~ 87 (135)
....+++|||||+|.++..++++.
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r~ 139 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLERN 139 (506)
T ss_pred CceEEEEeccceeehhHHHHhhCC
Confidence 345899999999999999999874
No 235
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=92.15 E-value=0.29 Score=35.72 Aligned_cols=73 Identities=19% Similarity=0.159 Sum_probs=54.4
Q ss_pred HHHhccccccHHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeechHHHHhCCCC-----CCcEEEecC
Q 032721 43 KAMSGVSVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDLPEVVAEAPSI-----PGVTHIGGD 117 (135)
Q Consensus 43 ~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~p~~~~~a~~~-----~rv~~~~gd 117 (135)
.-|..+-+..+...+++. ..+..+|+.||=|-|.+...+.++.|..+ .++---|.|++..+.. ++|....|-
T Consensus 81 ~VMm~WEtpiMha~A~ai--~tkggrvLnVGFGMgIidT~iQe~~p~~H-~IiE~hp~V~krmr~~gw~ek~nViil~g~ 157 (271)
T KOG1709|consen 81 GVMMRWETPIMHALAEAI--STKGGRVLNVGFGMGIIDTFIQEAPPDEH-WIIEAHPDVLKRMRDWGWREKENVIILEGR 157 (271)
T ss_pred hhhhhhhhHHHHHHHHHH--hhCCceEEEeccchHHHHHHHhhcCCcce-EEEecCHHHHHHHHhcccccccceEEEecc
Confidence 345555556666666665 46678999999999999999999988877 5444449999987754 677777775
Q ss_pred C
Q 032721 118 M 118 (135)
Q Consensus 118 ~ 118 (135)
+
T Consensus 158 W 158 (271)
T KOG1709|consen 158 W 158 (271)
T ss_pred h
Confidence 5
No 236
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=91.98 E-value=0.39 Score=34.31 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=31.9
Q ss_pred ccCCCCCCcceEEeecCCCCHHHHHHHHHC-CCCCeeEEeech
Q 032721 58 DGYDGFKGVKRLVDVGGSAGDCLRMILQKH-PFICEGINFDLP 99 (135)
Q Consensus 58 ~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~-p~l~~~~~~D~p 99 (135)
+.|.-+.+..+|+|+|+.+|..+.-..++. |+-. +.++|+-
T Consensus 62 dKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~-v~gVDll 103 (232)
T KOG4589|consen 62 DKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGM-VLGVDLL 103 (232)
T ss_pred hhccccCCCCEEEEccCCCChHHHHHHHhhCCCce-EEEEeee
Confidence 344434456899999999999999777766 8888 8999973
No 237
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=91.64 E-value=0.38 Score=34.10 Aligned_cols=63 Identities=13% Similarity=0.121 Sum_probs=46.4
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCCCC------CCcEEEe
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP------AADAIFM 130 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~~p------~~D~~~l 130 (135)
..+++|+=+|+|.++.+.+++.-. + ++.+|. ..++...+++ .+++.+..|.+.-++ ..|+|++
T Consensus 44 g~~~LDlFAGSGaLGlEAlSRGA~-~-~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 44 GARVLDLFAGSGALGLEALSRGAA-R-VVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL 120 (187)
T ss_pred CCEEEEecCCccHhHHHHHhCCCc-e-EEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence 379999999999999999998543 4 899998 6677666543 577777777763211 2477775
No 238
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=91.29 E-value=0.73 Score=33.94 Aligned_cols=43 Identities=21% Similarity=0.289 Sum_probs=30.6
Q ss_pred HHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 54 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
...++.|+-..+...++|||.+||.++..++++-. -+ ++.+|.
T Consensus 68 ~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gA-k~-VyavDV 110 (245)
T COG1189 68 EKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGA-KH-VYAVDV 110 (245)
T ss_pred HHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCC-cE-EEEEEc
Confidence 34555555122458999999999999999988632 24 788886
No 239
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=91.13 E-value=0.27 Score=38.64 Aligned_cols=43 Identities=19% Similarity=0.321 Sum_probs=32.8
Q ss_pred HHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeech
Q 032721 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDLP 99 (135)
Q Consensus 55 ~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~p 99 (135)
+++..+..|-+..++||+|.|.|+++.-+.-.| +++ +..+|-.
T Consensus 143 elvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y-~ls-V~aIegs 185 (476)
T KOG2651|consen 143 ELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY-GLS-VKAIEGS 185 (476)
T ss_pred HHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc-Cce-EEEeccc
Confidence 344333237778999999999999999998877 557 8888863
No 240
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=90.96 E-value=0.28 Score=37.90 Aligned_cols=66 Identities=24% Similarity=0.198 Sum_probs=53.8
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-------CCcEEEecCCCCCCCC---CcEEEeccc
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA---ADAIFMKVH 133 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-------~rv~~~~gd~~~~~p~---~D~~~l~~v 133 (135)
..+|||.=+|-|.+++.+++. ...+ ++..|+ |.+++..+++ .+++.+.||-.+-.|. +|-++|.+.
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~-g~~~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKK-GRPK-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred CCEEEEccCCcccchhhhhhc-CCce-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 579999999999999999985 3446 999999 9988877653 5689999999776444 799999764
No 241
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=90.17 E-value=0.45 Score=35.17 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=35.1
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI 108 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~ 108 (135)
.+..+.|||||.|++...|..+. +.+.+..|. -.|++.++..
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~ 114 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDA 114 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhcc
Confidence 35799999999999999999886 444899998 7888887754
No 242
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=89.97 E-value=0.93 Score=33.76 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=30.3
Q ss_pred CCCcceEEeecCCCCHHHHHHHHHC-----CCCCeeEEeec
Q 032721 63 FKGVKRLVDVGGSAGDCLRMILQKH-----PFICEGINFDL 98 (135)
Q Consensus 63 ~~~~~~vvDvGgG~G~~~~~l~~~~-----p~l~~~~~~D~ 98 (135)
+.+...+|++|||.|.++..+.+.. +... ++++|.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~-~~lIDR 55 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSR-FVLIDR 55 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCcc-EEEEec
Confidence 5566799999999999999999998 4556 999997
No 243
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=89.50 E-value=0.22 Score=39.21 Aligned_cols=63 Identities=21% Similarity=0.135 Sum_probs=50.8
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC--------CCcEEEecCCCCCCC-------CCcEEE
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI--------PGVTHIGGDMFKSIP-------AADAIF 129 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~--------~rv~~~~gd~~~~~p-------~~D~~~ 129 (135)
.++|||+=|=||.++...+...- -+ +|.+|+ ..+++.|+++ .++.++.+|.|+.+. .-|+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA-~~-vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGA-SE-VTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCC-Cc-eEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 58999999999999998887532 25 999999 7888888764 578999999997642 138988
Q ss_pred e
Q 032721 130 M 130 (135)
Q Consensus 130 l 130 (135)
+
T Consensus 296 l 296 (393)
T COG1092 296 L 296 (393)
T ss_pred E
Confidence 6
No 244
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=89.42 E-value=0.37 Score=37.18 Aligned_cols=56 Identities=25% Similarity=0.240 Sum_probs=41.2
Q ss_pred CCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC--------C----CcEEEecCCCCC
Q 032721 64 KGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI--------P----GVTHIGGDMFKS 121 (135)
Q Consensus 64 ~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~--------~----rv~~~~gd~~~~ 121 (135)
++...++|+|||-|.-++..-++ .+...++.|+ ...+++|++. . .+.|+.+|-|..
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~ 184 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKE 184 (389)
T ss_pred ccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchh
Confidence 45578999999999888776655 3333899999 6678887653 2 368889988754
No 245
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=89.25 E-value=0.23 Score=37.71 Aligned_cols=56 Identities=18% Similarity=0.160 Sum_probs=35.7
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC--------CCcEEEec----CCCCCC
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI--------PGVTHIGG----DMFKSI 122 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~--------~rv~~~~g----d~~~~~ 122 (135)
..+++|||+|.-++=-.|..+..+.+ +++-|+ +..++.|+++ ++|+++.. ++|..+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~-fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i 171 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWS-FVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGI 171 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--E-EEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTS
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCe-EEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhh
Confidence 46899999999865433333334788 999999 8888888653 57877643 566653
No 246
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=89.23 E-value=0.86 Score=28.70 Aligned_cols=50 Identities=24% Similarity=0.373 Sum_probs=33.3
Q ss_pred EEeecCCCCHHHHHHHHHCCC-CCeeEEeec-hHHHHhCCCC---CC---cEEEecCCCC
Q 032721 69 LVDVGGSAGDCLRMILQKHPF-ICEGINFDL-PEVVAEAPSI---PG---VTHIGGDMFK 120 (135)
Q Consensus 69 vvDvGgG~G~~~~~l~~~~p~-l~~~~~~D~-p~~~~~a~~~---~r---v~~~~gd~~~ 120 (135)
++|+|||+|... .+....+. .. ++++|. +.++..+... .. +.+..+|...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAY-VVGVDLSPEMLALARARAEGAGLGLVDFVVADALG 109 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCce-EEEEeCCHHHHHHHHhhhhhcCCCceEEEEecccc
Confidence 999999999977 44444443 35 778898 6666663322 11 5778888765
No 247
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=88.48 E-value=1.3 Score=35.75 Aligned_cols=68 Identities=16% Similarity=0.087 Sum_probs=46.8
Q ss_pred CCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCCC---CCCC-CcEEEe
Q 032721 63 FKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFK---SIPA-ADAIFM 130 (135)
Q Consensus 63 ~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~~---~~p~-~D~~~l 130 (135)
-....+|+|+++++|.=+..++....+--.++..|+ +..+...+++ .++.+...|.-. ..|. .|.|++
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 345579999999999999999998765323889998 6666655433 456666666532 1343 377764
No 248
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=88.09 E-value=0.56 Score=37.71 Aligned_cols=40 Identities=15% Similarity=0.097 Sum_probs=33.2
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCC
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPS 107 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~ 107 (135)
...++|||.|||.++...+++-.+ . ++.++. .+|.+.|++
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD-~-vtA~EvfkPM~d~ark 107 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGAD-S-VTACEVFKPMVDLARK 107 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCC-e-EEeehhhchHHHHHHH
Confidence 468999999999999999888733 5 899998 788887764
No 249
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=87.07 E-value=0.64 Score=34.27 Aligned_cols=72 Identities=14% Similarity=0.106 Sum_probs=40.7
Q ss_pred HHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCC----C-CCcEEEecCCCCCCCC----
Q 032721 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPS----I-PGVTHIGGDMFKSIPA---- 124 (135)
Q Consensus 55 ~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~----~-~rv~~~~gd~~~~~p~---- 124 (135)
.+.+..+ +.+ ++|+=|| -.-..+++++..++..+ ++++|+ +..++...+ . -.|+.+.+|+-.++|.
T Consensus 36 ~~~~~gd-L~g-k~il~lG-DDDLtSlA~al~~~~~~-I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~ 111 (243)
T PF01861_consen 36 LMAERGD-LEG-KRILFLG-DDDLTSLALALTGLPKR-ITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRG 111 (243)
T ss_dssp HHHHTT--STT--EEEEES--TT-HHHHHHHHT--SE-EEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS
T ss_pred HHHhcCc-ccC-CEEEEEc-CCcHHHHHHHhhCCCCe-EEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhc
Confidence 3555665 554 7888898 45567777777777777 999999 666665432 1 3499999999999885
Q ss_pred -CcEEEe
Q 032721 125 -ADAIFM 130 (135)
Q Consensus 125 -~D~~~l 130 (135)
.|+++.
T Consensus 112 ~fD~f~T 118 (243)
T PF01861_consen 112 KFDVFFT 118 (243)
T ss_dssp -BSEEEE
T ss_pred CCCEEEe
Confidence 388864
No 250
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=86.98 E-value=0.96 Score=34.02 Aligned_cols=66 Identities=20% Similarity=0.281 Sum_probs=37.9
Q ss_pred cceEEeecCCCCH-HHHHHHHHC-CCCCeeEEeec-hHHHHhCCC--------CCCcEEEecCCCCC---CCCCcEEEec
Q 032721 66 VKRLVDVGGSAGD-CLRMILQKH-PFICEGINFDL-PEVVAEAPS--------IPGVTHIGGDMFKS---IPAADAIFMK 131 (135)
Q Consensus 66 ~~~vvDvGgG~G~-~~~~l~~~~-p~l~~~~~~D~-p~~~~~a~~--------~~rv~~~~gd~~~~---~p~~D~~~l~ 131 (135)
..+|+=||+|+== -++.+++++ ++.. ++++|+ |.+++.+++ ..+++|+.+|..+. +-..|+|++.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~-v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGAR-VHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--E-EEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 3599999999754 445555544 5677 999999 988888754 26899999998643 2234888875
Q ss_pred c
Q 032721 132 V 132 (135)
Q Consensus 132 ~ 132 (135)
.
T Consensus 200 a 200 (276)
T PF03059_consen 200 A 200 (276)
T ss_dssp T
T ss_pred h
Confidence 3
No 251
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=86.70 E-value=0.65 Score=34.08 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=24.3
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCC--------CeeEEeec
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFI--------CEGINFDL 98 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l--------~~~~~~D~ 98 (135)
.-+|+++|+|+|.++.-+++..... + .++++.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~-y~ivE~ 58 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLR-YHIVEI 58 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCE-EEEE-T
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcce-EEEEcC
Confidence 3699999999999999888866544 4 888887
No 252
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=86.33 E-value=3.3 Score=31.76 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=23.5
Q ss_pred ceEEeecCCCCHHHHHHHHHC--------------------CCCCeeEEeec
Q 032721 67 KRLVDVGGSAGDCLRMILQKH--------------------PFICEGINFDL 98 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~--------------------p~l~~~~~~D~ 98 (135)
.+||-||||.|.=..+++..+ |.+. ++++|+
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~-itlvDi 138 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLS-ITLVDI 138 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcce-EEEEEe
Confidence 699999999997555555544 2366 899998
No 253
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=85.97 E-value=0.46 Score=36.15 Aligned_cols=67 Identities=21% Similarity=0.355 Sum_probs=50.1
Q ss_pred CCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC----------CCcEEEecCCC---CCCCC--Cc
Q 032721 63 FKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI----------PGVTHIGGDMF---KSIPA--AD 126 (135)
Q Consensus 63 ~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~----------~rv~~~~gd~~---~~~p~--~D 126 (135)
.++.+.++-||||.|-+++++.++ +.+..+...|. ..+++..++. ++|..+.||=| +..+. -|
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 346789999999999999999986 77765788888 6666665542 78999999854 33433 37
Q ss_pred EEEe
Q 032721 127 AIFM 130 (135)
Q Consensus 127 ~~~l 130 (135)
+++.
T Consensus 198 Vii~ 201 (337)
T KOG1562|consen 198 VIIT 201 (337)
T ss_pred EEEE
Confidence 7764
No 254
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=85.21 E-value=2.3 Score=31.52 Aligned_cols=39 Identities=18% Similarity=0.114 Sum_probs=27.8
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeechHHHHhCC
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDLPEVVAEAP 106 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~p~~~~~a~ 106 (135)
...+|.+|+|+|..++. +....... ++.-|.|.+++..+
T Consensus 87 ~~~vlELGsGtglvG~~-aa~~~~~~-v~ltD~~~~~~~L~ 125 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGIL-AALLLGAE-VVLTDLPKVVENLK 125 (248)
T ss_pred ceeEEEecCCccHHHHH-HHHHhcce-eccCCchhhHHHHH
Confidence 56799999999954444 44445667 88889877766543
No 255
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=84.98 E-value=0.66 Score=29.05 Aligned_cols=61 Identities=20% Similarity=0.195 Sum_probs=18.4
Q ss_pred EeecCCCCHHHHHHHHHCCCCC--eeEEeec-hH---HHHhCCC---CCCcEEEecCCCCCC---C--CCcEEEe
Q 032721 70 VDVGGSAGDCLRMILQKHPFIC--EGINFDL-PE---VVAEAPS---IPGVTHIGGDMFKSI---P--AADAIFM 130 (135)
Q Consensus 70 vDvGgG~G~~~~~l~~~~p~l~--~~~~~D~-p~---~~~~a~~---~~rv~~~~gd~~~~~---p--~~D~~~l 130 (135)
|+||+..|.-+..+++..+... +++.+|. +. .-+..++ ..+++++.+|+.+.+ + ..|++++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEE
Confidence 5789889988888887766542 3899998 52 3333332 268999999985442 3 2377665
No 256
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=84.35 E-value=1.4 Score=34.70 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=23.1
Q ss_pred CcceEEeecCCCCHHH--------HHHHHHC-------CCCCeeEEeech
Q 032721 65 GVKRLVDVGGSAGDCL--------RMILQKH-------PFICEGINFDLP 99 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~--------~~l~~~~-------p~l~~~~~~D~p 99 (135)
+.-+|+|+|||+|..+ .++.+++ |+++ +..=|+|
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~q-v~~nDLP 111 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFS-AFFSDLP 111 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcce-EEecCCC
Confidence 3568999999999543 2344432 4566 7777887
No 257
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=83.81 E-value=1.2 Score=32.53 Aligned_cols=45 Identities=20% Similarity=0.112 Sum_probs=35.1
Q ss_pred CCcceEEeecCCCCHHHHHHHHHCCC-CCeeEEeec-hHHHHhCCCC
Q 032721 64 KGVKRLVDVGGSAGDCLRMILQKHPF-ICEGINFDL-PEVVAEAPSI 108 (135)
Q Consensus 64 ~~~~~vvDvGgG~G~~~~~l~~~~p~-l~~~~~~D~-p~~~~~a~~~ 108 (135)
+..-++.|=.||.|.++.-+.--|+. +++++.-|+ +++++.|++|
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kN 96 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKN 96 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHh
Confidence 44579999999999999988887776 446899999 8999888753
No 258
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=83.35 E-value=1.6 Score=30.38 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=40.0
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCCCCeeEEeechHHHHhCCCC---------CCcEEEecCCCCC
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPFICEGINFDLPEVVAEAPSI---------PGVTHIGGDMFKS 121 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~p~~~~~a~~~---------~rv~~~~gd~~~~ 121 (135)
+...||-+|||-=.....+...+++++ ..-+|+|++++.-++. .+.++++.|+.+.
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~-~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~ 142 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVR-WFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDD 142 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEE-EEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSH
T ss_pred CCcEEEEcCCCCCchHHHhhccccceE-EEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccch
Confidence 445899999999999999999888878 8888999988765431 2366899999753
No 259
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=82.55 E-value=1.4 Score=34.57 Aligned_cols=45 Identities=13% Similarity=0.269 Sum_probs=34.8
Q ss_pred HHHHhccCCCCCCcceEEeecCCCCH----HHHHHHHHC---CCCCeeEEeech
Q 032721 53 MTSVLDGYDGFKGVKRLVDVGGSAGD----CLRMILQKH---PFICEGINFDLP 99 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~~vvDvGgG~G~----~~~~l~~~~---p~l~~~~~~D~p 99 (135)
.+.|++++. -.+.-+|+|+|-|.|. +..+|+++. |.++ +|+++.|
T Consensus 99 NqaIleA~~-g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~Lr-IT~i~~~ 150 (374)
T PF03514_consen 99 NQAILEAFE-GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLR-ITGIGPP 150 (374)
T ss_pred hHHHHHHhc-cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEE-EEeccCC
Confidence 466888886 5566899999999994 677777664 5667 9999984
No 260
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=82.27 E-value=0.63 Score=37.53 Aligned_cols=72 Identities=19% Similarity=0.220 Sum_probs=52.9
Q ss_pred cCchHHHHHHHHHhccccccHHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC
Q 032721 33 KKPEMNGLMRKAMSGVSVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI 108 (135)
Q Consensus 33 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~ 108 (135)
+.|+....+++.|.+.-+..........+ - ...++=||=|.|.+...+....|..+ ++++++ |.+++.|+.+
T Consensus 266 r~~~l~s~~h~~m~~g~aL~~n~~~~~~~-~--~~~~lvvg~ggG~l~sfl~~~~p~~~-i~~ve~dP~~l~va~q~ 338 (482)
T KOG2352|consen 266 RKPELASQYHQMMIGGLALIMNRPPQKLD-T--GGKQLVVGLGGGGLPSFLHMSLPKFQ-ITAVEIDPEMLEVATQY 338 (482)
T ss_pred cCcccCcchhhhhhccceeccccCchhcc-c--cCcEEEEecCCCccccceeeecCccc-eeEEEEChhHhhccHhh
Confidence 45667778888888876654433333333 2 24556677777999999999999989 999999 9999999864
No 261
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.45 E-value=1.8 Score=31.76 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=45.4
Q ss_pred CCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCC-------CCCCcEEEecCCCCCC
Q 032721 64 KGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAP-------SIPGVTHIGGDMFKSI 122 (135)
Q Consensus 64 ~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~-------~~~rv~~~~gd~~~~~ 122 (135)
-+.++.+|||.=||.-+.+.+.+-|+--+++.+|. +...+.+. -...|+++.|+-.+.+
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esL 138 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESL 138 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhH
Confidence 34689999999999999999999998435899998 55555443 2367999999877653
No 262
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=81.11 E-value=8.8 Score=25.25 Aligned_cols=60 Identities=23% Similarity=0.257 Sum_probs=40.0
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCCCCeeEEeechHHHHhCCCCCCcEEEecCCCCC-CC---CCcEEEe
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKS-IP---AADAIFM 130 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~p~~~~~a~~~~rv~~~~gd~~~~-~p---~~D~~~l 130 (135)
..++|++||-|-=.-....++++. .. ++..|+.+- .++ ..++++.-|.|++ +. .||+++.
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g-~d-v~atDI~~~--~a~--~g~~~v~DDitnP~~~iY~~A~lIYS 76 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERG-FD-VLATDINEK--TAP--EGLRFVVDDITNPNISIYEGADLIYS 76 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcC-Cc-EEEEecccc--cCc--ccceEEEccCCCccHHHhhCccceee
Confidence 346999999777654444444443 67 899998433 333 6789999999987 32 3576653
No 263
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=78.34 E-value=1.7 Score=32.83 Aligned_cols=64 Identities=19% Similarity=0.124 Sum_probs=47.7
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC--------CCcEEEecCCCCCCC------CCcEEE
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI--------PGVTHIGGDMFKSIP------AADAIF 129 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~--------~rv~~~~gd~~~~~p------~~D~~~ 129 (135)
..++|||+=|=||.++...+. ....+ ++.+|. ..+++.++++ ++++++.+|.|+.+. .-|+|+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~-gGA~~-v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAA-GGAKE-VVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHH-TTESE-EEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred CCCceEEecCCCCHHHHHHHH-CCCCE-EEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 347999999999999998765 33445 999999 7888887653 589999999987532 238888
Q ss_pred e
Q 032721 130 M 130 (135)
Q Consensus 130 l 130 (135)
+
T Consensus 201 l 201 (286)
T PF10672_consen 201 L 201 (286)
T ss_dssp E
T ss_pred E
Confidence 6
No 264
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=76.56 E-value=1.6 Score=32.96 Aligned_cols=74 Identities=23% Similarity=0.240 Sum_probs=46.9
Q ss_pred HHHHHHhccccc------cHHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCCCCcE
Q 032721 40 LMRKAMSGVSVP------FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSIPGVT 112 (135)
Q Consensus 40 ~f~~~m~~~~~~------~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~~rv~ 112 (135)
.|+..|...+.. ....++...+ ....++|+|||.|.++. .+|.+. .+..|+ ...+..++......
T Consensus 17 IYd~ia~~fs~tr~~~Wp~v~qfl~~~~---~gsv~~d~gCGngky~~----~~p~~~-~ig~D~c~~l~~~ak~~~~~~ 88 (293)
T KOG1331|consen 17 IYDKIATHFSATRAAPWPMVRQFLDSQP---TGSVGLDVGCGNGKYLG----VNPLCL-IIGCDLCTGLLGGAKRSGGDN 88 (293)
T ss_pred HHHHhhhhccccccCccHHHHHHHhccC---CcceeeecccCCcccCc----CCCcce-eeecchhhhhccccccCCCce
Confidence 455555554432 2334444443 34689999999998763 348888 999999 66777776654434
Q ss_pred EEecCCCCC
Q 032721 113 HIGGDMFKS 121 (135)
Q Consensus 113 ~~~gd~~~~ 121 (135)
....|....
T Consensus 89 ~~~ad~l~~ 97 (293)
T KOG1331|consen 89 VCRADALKL 97 (293)
T ss_pred eehhhhhcC
Confidence 555677653
No 265
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=76.54 E-value=6.2 Score=30.97 Aligned_cols=39 Identities=18% Similarity=0.388 Sum_probs=29.6
Q ss_pred HHHHhccCCCCCCcceEEeecCCCC-----HHHHHHHHHCCCCC
Q 032721 53 MTSVLDGYDGFKGVKRLVDVGGSAG-----DCLRMILQKHPFIC 91 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~~vvDvGgG~G-----~~~~~l~~~~p~l~ 91 (135)
+...++..|.+..+..+..+||||| .++..|..+||+..
T Consensus 89 ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~~~ 132 (379)
T cd02190 89 IRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVY 132 (379)
T ss_pred HHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCccc
Confidence 3455666766677789999999998 56667888898764
No 266
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=76.51 E-value=2.6 Score=32.70 Aligned_cols=62 Identities=21% Similarity=0.161 Sum_probs=41.1
Q ss_pred cceEEeecC-CCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCCCCcEEEec---CCCCCCCC-CcEEE
Q 032721 66 VKRLVDVGG-SAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSIPGVTHIGG---DMFKSIPA-ADAIF 129 (135)
Q Consensus 66 ~~~vvDvGg-G~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~~rv~~~~g---d~~~~~p~-~D~~~ 129 (135)
.+.|+=+|. |.|+++..+++..- .+ ++++|. ++-.+.|++...-.++.. |..+.++. +|+++
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g-a~-Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii 234 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG-AE-VIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAII 234 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC-Ce-EEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEE
Confidence 345544443 67899999999877 88 999999 777888877644444442 33333333 57665
No 267
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=76.42 E-value=1.5 Score=31.78 Aligned_cols=57 Identities=21% Similarity=0.281 Sum_probs=38.6
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeechHHHHhCCCCCCcEEEecCCCCC-CCC-----CcEEEecccCC
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKS-IPA-----ADAIFMKVHHF 135 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~p~~~~~a~~~~rv~~~~gd~~~~-~p~-----~D~~~l~~vl~ 135 (135)
-++||||+-+..... ..++-+. ++-+|+.+ +.+ .....||++- +|. .|+|.++-||+
T Consensus 53 lrlLEVGals~~N~~---s~~~~fd-vt~IDLns------~~~--~I~qqDFm~rplp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 53 LRLLEVGALSTDNAC---STSGWFD-VTRIDLNS------QHP--GILQQDFMERPLPKNESEKFDVISLSLVLN 115 (219)
T ss_pred ceEEeecccCCCCcc---cccCcee-eEEeecCC------CCC--CceeeccccCCCCCCcccceeEEEEEEEEe
Confidence 589999997443221 2466677 89999843 123 3456799985 662 39999998874
No 268
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=76.16 E-value=1.5 Score=32.36 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=34.4
Q ss_pred HHHHHHHHCCCCCeeEEeec-hHHHHhCCCCCCcEEEecCCCCCCCCCcEEEec
Q 032721 79 CLRMILQKHPFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMK 131 (135)
Q Consensus 79 ~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~~rv~~~~gd~~~~~p~~D~~~l~ 131 (135)
++.+|.++.++.+ ++++|. +..++.|.+..-+.-...+ .+.+..+|++++.
T Consensus 1 ~A~aL~~~g~~~~-v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvla 52 (258)
T PF02153_consen 1 IALALRKAGPDVE-VYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLA 52 (258)
T ss_dssp HHHHHHHTTTTSE-EEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-
T ss_pred ChHHHHhCCCCeE-EEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEc
Confidence 5788999999999 999999 8888887554433333333 2335667888875
No 269
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=74.80 E-value=13 Score=28.19 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=32.3
Q ss_pred HHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeechH
Q 032721 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDLPE 100 (135)
Q Consensus 54 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~p~ 100 (135)
..+.+.+....+..+|+=+|||.-.+...+.+.+|+.+ +.+.|-|.
T Consensus 262 ~~i~~~~~~~~~~~~Iil~GGGa~ll~~~l~~~f~~~~-i~~~~dp~ 307 (320)
T TIGR03739 262 STMMTWIGAPESIQNIVLVGGGAFLFKKAVKAAFPKHR-IVEVDEPM 307 (320)
T ss_pred HHHHHhcccCCcccEEEEeCCcHHHHHHHHHHHCCCCe-eEecCCcH
Confidence 33444442123467899899999988889999999987 76666443
No 270
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=74.33 E-value=4.4 Score=30.64 Aligned_cols=55 Identities=22% Similarity=0.214 Sum_probs=40.5
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeechHHHHhCCCCCCcEEEecCCCCCCC
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIP 123 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~p~~~~~a~~~~rv~~~~gd~~~~~p 123 (135)
.-.-||+|...|...-.|.++ ++. ++.+|-..+.+..-...+|+.+..|=|+-.|
T Consensus 212 ~M~avDLGAcPGGWTyqLVkr--~m~-V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P 266 (358)
T COG2933 212 GMWAVDLGACPGGWTYQLVKR--NMR-VYAVDNGPMAQSLMDTGQVTHLREDGFKFRP 266 (358)
T ss_pred CceeeecccCCCccchhhhhc--ceE-EEEeccchhhhhhhcccceeeeeccCccccc
Confidence 357899999999999999987 677 9999986666554444566666666555544
No 271
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=73.51 E-value=13 Score=25.63 Aligned_cols=56 Identities=13% Similarity=0.087 Sum_probs=33.6
Q ss_pred HHHHHHHhccccccHHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 39 GLMRKAMSGVSVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 39 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.+|-+-|...... .+.+.+..... ..-|+|+|=|.|..=-.+.+.+|+-+ +.+||.
T Consensus 5 Dsfi~RmtaQR~~-L~~a~~~v~~~--~G~VlElGLGNGRTydHLRe~~p~R~-I~vfDR 60 (160)
T PF12692_consen 5 DSFIRRMTAQRDC-LNWAAAQVAGL--PGPVLELGLGNGRTYDHLREIFPDRR-IYVFDR 60 (160)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHTTT----S-EEEE--TTSHHHHHHHHH--SS--EEEEES
T ss_pred HHHHHHHHHHHHH-HHHHHHHhcCC--CCceEEeccCCCccHHHHHHhCCCCe-EEEEee
Confidence 4565666554332 23333343312 26899999999999999999999999 999996
No 272
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=72.40 E-value=5.6 Score=28.67 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=30.5
Q ss_pred cceEEeecCCCCHH---HHHHHHHC-CCCCeeEEeec--hHHHHhCCC----CCCcEEEecCCCCC
Q 032721 66 VKRLVDVGGSAGDC---LRMILQKH-PFICEGINFDL--PEVVAEAPS----IPGVTHIGGDMFKS 121 (135)
Q Consensus 66 ~~~vvDvGgG~G~~---~~~l~~~~-p~l~~~~~~D~--p~~~~~a~~----~~rv~~~~gd~~~~ 121 (135)
+.+|+.+|--.|.= ...+++.. ++.+ ++++|+ +..-..+.+ .+||+++.||--++
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~-VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~ 97 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGK-VIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDP 97 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---E-EEEEES-GTT--S-GGGG----TTEEEEES-SSST
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCce-EEEEeCCcchhchHHHhhccccCceEEEECCCCCH
Confidence 47999999877653 33445555 6667 999998 222222222 38999999998643
No 273
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=72.35 E-value=6.4 Score=26.09 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=19.1
Q ss_pred eecCCCC--HHHHHHH--HHCCCCCeeEEeec-hHHHH
Q 032721 71 DVGGSAG--DCLRMIL--QKHPFICEGINFDL-PEVVA 103 (135)
Q Consensus 71 DvGgG~G--~~~~~l~--~~~p~l~~~~~~D~-p~~~~ 103 (135)
|||++.| ....... ...|..+ ++.+|. |..++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~-v~~~Ep~p~~~~ 37 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGR-VHAFEPNPSNFE 37 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SE-EEEE---HHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCE-EEEEECCHHHHH
Confidence 8999999 5555544 4567777 999998 66543
No 274
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=72.13 E-value=6.3 Score=28.98 Aligned_cols=75 Identities=12% Similarity=0.146 Sum_probs=44.8
Q ss_pred HHHHhccCCCCCCc--ceEEeecCCCCHHHHHHHHHCCCCCeeEEeechHHHHh-C-------CC---C-----CCcEEE
Q 032721 53 MTSVLDGYDGFKGV--KRLVDVGGSAGDCLRMILQKHPFICEGINFDLPEVVAE-A-------PS---I-----PGVTHI 114 (135)
Q Consensus 53 ~~~~~~~~~~~~~~--~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~p~~~~~-a-------~~---~-----~rv~~~ 114 (135)
.+.++++.. ..+. .+|+|.=+|-|.-+.-++.. +.+ +++++..+++.. . .. . .|++++
T Consensus 62 ~~~l~kA~G-lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~-V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~ 137 (234)
T PF04445_consen 62 GDPLAKAVG-LKPGMRPSVLDATAGLGRDAFVLASL--GCK-VTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLI 137 (234)
T ss_dssp GSHHHHHTT--BTTB---EEETT-TTSHHHHHHHHH--T---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEE
T ss_pred ccHHHHHhC-CCCCCCCEEEECCCcchHHHHHHHcc--CCe-EEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEE
Confidence 356777764 5443 49999999999988888764 557 999998443322 1 11 1 489999
Q ss_pred ecCCCCCCC--C--CcEEEec
Q 032721 115 GGDMFKSIP--A--ADAIFMK 131 (135)
Q Consensus 115 ~gd~~~~~p--~--~D~~~l~ 131 (135)
.+|..+-++ . .|+|++-
T Consensus 138 ~~d~~~~L~~~~~s~DVVY~D 158 (234)
T PF04445_consen 138 HGDALEYLRQPDNSFDVVYFD 158 (234)
T ss_dssp ES-CCCHCCCHSS--SEEEE-
T ss_pred cCCHHHHHhhcCCCCCEEEEC
Confidence 999876543 2 4998873
No 275
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=71.75 E-value=6.8 Score=30.20 Aligned_cols=69 Identities=20% Similarity=0.227 Sum_probs=36.2
Q ss_pred CCCcceEEeecCCCCHHHH--------HHHHHCC--------CCCeeEEeechH-----HHHhCCC-------CCC--cE
Q 032721 63 FKGVKRLVDVGGSAGDCLR--------MILQKHP--------FICEGINFDLPE-----VVAEAPS-------IPG--VT 112 (135)
Q Consensus 63 ~~~~~~vvDvGgG~G~~~~--------~l~~~~p--------~l~~~~~~D~p~-----~~~~a~~-------~~r--v~ 112 (135)
.++.-+|+|+||.+|.-+. ++.++++ .++ +..=|+|. ....... ... +.
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~-v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~ 92 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQ-VFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVS 92 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEE-EEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEE-EEeCCCCCccHHHHHHhChhhhhccCCCceEEEE
Confidence 4566799999999996443 3333332 344 77779871 1111111 122 56
Q ss_pred EEecCCCCC-CCCC--cEEEecc
Q 032721 113 HIGGDMFKS-IPAA--DAIFMKV 132 (135)
Q Consensus 113 ~~~gd~~~~-~p~~--D~~~l~~ 132 (135)
-++|.|+.. +|.. |+++...
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~ 115 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSY 115 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES
T ss_pred ecCchhhhccCCCCceEEEEEec
Confidence 678999988 7864 7766544
No 276
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=71.56 E-value=2.5 Score=26.65 Aligned_cols=46 Identities=30% Similarity=0.201 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHCCC--CCeeEEeec-hHHHHhCCCCCCcEEEecCCCCC
Q 032721 74 GSAGDCLRMILQKHPF--ICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS 121 (135)
Q Consensus 74 gG~G~~~~~l~~~~p~--l~~~~~~D~-p~~~~~a~~~~rv~~~~gd~~~~ 121 (135)
||.|.++..+++.... .+ ++++|. ++.++.++.. .+.++.||..++
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~-vvvid~d~~~~~~~~~~-~~~~i~gd~~~~ 52 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGID-VVVIDRDPERVEELREE-GVEVIYGDATDP 52 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSE-EEEEESSHHHHHHHHHT-TSEEEES-TTSH
T ss_pred EcCCHHHHHHHHHHHhCCCE-EEEEECCcHHHHHHHhc-ccccccccchhh
Confidence 3456666666654433 34 999998 7777776543 388999999765
No 277
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=71.21 E-value=14 Score=28.54 Aligned_cols=56 Identities=14% Similarity=0.058 Sum_probs=35.7
Q ss_pred HHHHHhccccccHHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeech
Q 032721 41 MRKAMSGVSVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDLP 99 (135)
Q Consensus 41 f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~p 99 (135)
+.++...........+...+.......+|+=+|||+-.+-..|.+.+|+ +.+.|-|
T Consensus 267 ~~~~~~~~~~~i~~~i~~~~~~~~~~d~IiL~GGGA~ll~~~lk~~f~~---~~~~~~p 322 (344)
T PRK13917 267 FYKEQDSVIDEVMSGFEIAVGNINSFDRVIVTGGGANIFFDSLSHWYSD---VEKADES 322 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCEEEEECCcHHHHHHHHHHHcCC---eEEcCCh
Confidence 3334444433334444444433556678999999999888889999996 5555544
No 278
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=71.13 E-value=3.3 Score=31.28 Aligned_cols=35 Identities=23% Similarity=0.172 Sum_probs=26.5
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHH
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVV 102 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~ 102 (135)
.++|+|+|||+|.-.+....+.- .+ +..+|. .+++
T Consensus 117 ~k~vLELgCg~~Lp~i~~~~~~~-~~-~~fqD~na~vl 152 (282)
T KOG2920|consen 117 GKRVLELGCGAALPGIFAFVKGA-VS-VHFQDFNAEVL 152 (282)
T ss_pred CceeEecCCcccccchhhhhhcc-ce-eeeEecchhhe
Confidence 38999999999987776666532 56 888888 5555
No 279
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=71.02 E-value=7.3 Score=25.89 Aligned_cols=57 Identities=26% Similarity=0.430 Sum_probs=30.3
Q ss_pred cceEEeecCCCCH-HHHHHHHHCCCCCeeEEeec-hHHHHhCCCCCCcEEEecCCCCCCC----CCcEEEe
Q 032721 66 VKRLVDVGGSAGD-CLRMILQKHPFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIP----AADAIFM 130 (135)
Q Consensus 66 ~~~vvDvGgG~G~-~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~~rv~~~~gd~~~~~p----~~D~~~l 130 (135)
..++|+||-|.=. .+..|.+.- .. +++.|. |. .++ ..+.++.-|.|++-. .+|+++.
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~G--~d-V~~tDi~~~---~a~--~g~~~v~DDif~P~l~iY~~a~lIYS 76 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKERG--FD-VIATDINPR---KAP--EGVNFVVDDIFNPNLEIYEGADLIYS 76 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHHS---E-EEEE-SS-S---------STTEE---SSS--HHHHTTEEEEEE
T ss_pred CCcEEEECcCCCHHHHHHHHHcC--Cc-EEEEECccc---ccc--cCcceeeecccCCCHHHhcCCcEEEE
Confidence 3599999988765 555555553 77 999998 54 222 678899999998722 3577664
No 280
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=70.91 E-value=4.2 Score=30.16 Aligned_cols=52 Identities=17% Similarity=0.156 Sum_probs=38.2
Q ss_pred CcceEEeecCCCCHHHHHHHHHCC-CCCeeEEeechHHHHhCCC---------CCCcEEEecCCC
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHP-FICEGINFDLPEVVAEAPS---------IPGVTHIGGDMF 119 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p-~l~~~~~~D~p~~~~~a~~---------~~rv~~~~gd~~ 119 (135)
+...||.+|||-=.-...+. +| +++ +.-+|+|++++.-++ ..+..+++.|+.
T Consensus 81 g~~qvV~LGaGlDTr~~Rl~--~~~~~~-~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~ 142 (260)
T TIGR00027 81 GIRQVVILGAGLDTRAYRLP--WPDGTR-VFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR 142 (260)
T ss_pred CCcEEEEeCCccccHHHhcC--CCCCCe-EEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch
Confidence 45679999999887776663 34 466 888888998875321 267889999986
No 281
>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity. The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....
Probab=70.65 E-value=6.7 Score=29.77 Aligned_cols=56 Identities=18% Similarity=0.291 Sum_probs=36.4
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCCCC---eeEEeechHHHHhCCCCCCcEEEecCCCCC
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPFIC---EGINFDLPEVVAEAPSIPGVTHIGGDMFKS 121 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~l~---~~~~~D~p~~~~~a~~~~rv~~~~gd~~~~ 121 (135)
+...||=+|.+.|....-|.+.+|++. +.+++|..+-....+..+.|+++. +||++
T Consensus 58 ~~~~VVYiGsApG~Hi~~L~~lf~~~~~~i~wvLiDp~~f~~~l~~l~~v~l~~-~ffte 116 (294)
T PF01358_consen 58 GPVTVVYIGSAPGTHIPFLFDLFPDLKVPIKWVLIDPRPFCISLEELSNVTLIQ-RFFTE 116 (294)
T ss_dssp T-EEEEEES-SS-HHHHHHHHHHHHTT--EEEEEEESS---GGGTT-TTEEEEE-S---H
T ss_pred CceEEEEecCCCcchHHHHHHHHHhcCCceEEEEECCcchhhhhcccCcEEeeh-hhCCH
Confidence 346899999999999999999999865 489999844444444556688876 67765
No 282
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=70.27 E-value=9.5 Score=30.53 Aligned_cols=38 Identities=21% Similarity=0.285 Sum_probs=28.0
Q ss_pred HHHhccCCCCCCcceEEeecCCCC-----HHHHHHHHHCCCCC
Q 032721 54 TSVLDGYDGFKGVKRLVDVGGSAG-----DCLRMILQKHPFIC 91 (135)
Q Consensus 54 ~~~~~~~~~~~~~~~vvDvGgG~G-----~~~~~l~~~~p~l~ 91 (135)
+..++..|.+..+..+-.+||||| .++..|...||+..
T Consensus 121 r~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y~~~~ 163 (431)
T cd02188 121 DREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRYPKKL 163 (431)
T ss_pred HHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhHcCcce
Confidence 334445555677788999999998 46677888999754
No 283
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=70.11 E-value=12 Score=28.55 Aligned_cols=38 Identities=16% Similarity=0.192 Sum_probs=28.1
Q ss_pred HHHhccCCCCCCcceEEeecCCCC-----HHHHHHHHHCCCCC
Q 032721 54 TSVLDGYDGFKGVKRLVDVGGSAG-----DCLRMILQKHPFIC 91 (135)
Q Consensus 54 ~~~~~~~~~~~~~~~vvDvGgG~G-----~~~~~l~~~~p~l~ 91 (135)
...++..|.+..+..+.++||||| .++..+.+.||+..
T Consensus 80 r~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~~ 122 (328)
T cd00286 80 RKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKRL 122 (328)
T ss_pred HHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcCccc
Confidence 445566665666788999999888 36778888998544
No 284
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=69.62 E-value=6.3 Score=30.34 Aligned_cols=40 Identities=28% Similarity=0.386 Sum_probs=33.9
Q ss_pred CCcceEEeecCCCCHHHHHHHHHC--CCCCeeEEeechHHHHh
Q 032721 64 KGVKRLVDVGGSAGDCLRMILQKH--PFICEGINFDLPEVVAE 104 (135)
Q Consensus 64 ~~~~~vvDvGgG~G~~~~~l~~~~--p~l~~~~~~D~p~~~~~ 104 (135)
.....||-+|||.-.+...+...+ +.++ .+-+|.|++++.
T Consensus 86 ~~~~qivnLGcG~D~l~frL~s~~~~~~~~-fievDfp~~~~r 127 (335)
T KOG2918|consen 86 DGKKQIVNLGAGFDTLYFRLLSSGELDRVK-FIEVDFPEVVER 127 (335)
T ss_pred CCceEEEEcCCCccchhhhhhccCCCCcce-EEEecCcHHHHH
Confidence 455799999999999999999998 6666 888898887764
No 285
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=69.18 E-value=16 Score=26.12 Aligned_cols=61 Identities=15% Similarity=0.096 Sum_probs=36.8
Q ss_pred ceEEeecCCCCHHHH--HHHHHCCCCCeeEEeec---hHHHHhCCCCCCcEEEecCCCCC-CCCCcEEEec
Q 032721 67 KRLVDVGGSAGDCLR--MILQKHPFICEGINFDL---PEVVAEAPSIPGVTHIGGDMFKS-IPAADAIFMK 131 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~--~l~~~~p~l~~~~~~D~---p~~~~~a~~~~rv~~~~gd~~~~-~p~~D~~~l~ 131 (135)
++++=||||.=.... .|++. +.+ +++++. +...+.+ ...+++++.+++-.. +..+|+++..
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~--ga~-VtVvsp~~~~~l~~l~-~~~~i~~~~~~~~~~dl~~~~lVi~a 76 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKA--GAQ-LRVIAEELESELTLLA-EQGGITWLARCFDADILEGAFLVIAA 76 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHC--CCE-EEEEcCCCCHHHHHHH-HcCCEEEEeCCCCHHHhCCcEEEEEC
Confidence 588889998754443 33332 345 888875 2233322 235899998887533 5556777653
No 286
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=69.15 E-value=6.7 Score=33.05 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=34.2
Q ss_pred HhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeechH
Q 032721 56 VLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDLPE 100 (135)
Q Consensus 56 ~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~p~ 100 (135)
+-..|.-+.....++|+||.+|..+.-.++..|--+-++++|+.+
T Consensus 35 ln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 35 LNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred HHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 444554234557899999999999999999999655578899843
No 287
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=68.60 E-value=13 Score=29.05 Aligned_cols=39 Identities=21% Similarity=0.442 Sum_probs=28.4
Q ss_pred HHHHhccCCCCCCcceEEeecCCCCH-----HHHHHHHHCCCCC
Q 032721 53 MTSVLDGYDGFKGVKRLVDVGGSAGD-----CLRMILQKHPFIC 91 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~~vvDvGgG~G~-----~~~~l~~~~p~l~ 91 (135)
+...++..|.+..+..+.++|||||. ++..+...||+..
T Consensus 79 ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~~ 122 (382)
T cd06059 79 IRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKIL 122 (382)
T ss_pred HHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCccc
Confidence 34566777767777899999999872 4556677888654
No 288
>PRK09273 hypothetical protein; Provisional
Probab=67.01 E-value=5.9 Score=28.65 Aligned_cols=40 Identities=20% Similarity=0.215 Sum_probs=28.9
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeechHHHHhCCC
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDLPEVVAEAPS 107 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~p~~~~~a~~ 107 (135)
....=++||||.=....+.++|+++-+.+.| |.....+++
T Consensus 64 ~d~GIliCGTGiG~siAANK~pGIraalc~d-~~sA~lar~ 103 (211)
T PRK09273 64 VDFVVTGCGTGQGAMLALNSFPGVVCGYCID-PTDAYLFAQ 103 (211)
T ss_pred CCEEEEEcCcHHHHHHHHhcCCCeEEEEeCC-HHHHHHHHH
Confidence 3456689999999999999999999335555 555555544
No 289
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=66.77 E-value=6.7 Score=30.24 Aligned_cols=41 Identities=22% Similarity=0.107 Sum_probs=35.4
Q ss_pred ceEEeecCCC-CHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC
Q 032721 67 KRLVDVGGSA-GDCLRMILQKHPFICEGINFDL-PEVVAEAPSI 108 (135)
Q Consensus 67 ~~vvDvGgG~-G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~ 108 (135)
.+++=+|+|+ |.++..+++.....+ +++.|. +..++.|++.
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~-Viv~d~~~~Rl~~A~~~ 212 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASV-VIVVDRSPERLELAKEA 212 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCce-EEEeCCCHHHHHHHHHh
Confidence 3899999997 788888999888888 999999 9999999773
No 290
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=66.10 E-value=23 Score=26.01 Aligned_cols=58 Identities=14% Similarity=0.165 Sum_probs=39.9
Q ss_pred CCCcceEEeecCCCCHHHHHHHHHCC-CCCeeEEeec-h----HHHHhCCCCCCcEEEecCCCCC
Q 032721 63 FKGVKRLVDVGGSAGDCLRMILQKHP-FICEGINFDL-P----EVVAEAPSIPGVTHIGGDMFKS 121 (135)
Q Consensus 63 ~~~~~~vvDvGgG~G~~~~~l~~~~p-~l~~~~~~D~-p----~~~~~a~~~~rv~~~~gd~~~~ 121 (135)
+.+..+||-+|.++|.....+..--. +-. +.+++. | +.+..|++.++|--+-+|...+
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~-VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P 134 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGV-VYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHP 134 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSE-EEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSG
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCc-EEEEEecchhHHHHHHHhccCCceeeeeccCCCh
Confidence 66668999999999999988888655 444 667776 5 4556666667777777777554
No 291
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=65.81 E-value=19 Score=24.49 Aligned_cols=60 Identities=20% Similarity=0.195 Sum_probs=33.1
Q ss_pred ceEEeecCCCCHH--HHHHHHHCCCCCeeEEeechHHHHhCCCCCCcEEEecCCCCC-CCCCcEEEe
Q 032721 67 KRLVDVGGSAGDC--LRMILQKHPFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKS-IPAADAIFM 130 (135)
Q Consensus 67 ~~vvDvGgG~G~~--~~~l~~~~p~l~~~~~~D~p~~~~~a~~~~rv~~~~gd~~~~-~p~~D~~~l 130 (135)
.+|+=||||.=.. +..|++. +.+ +++++ |+..+.......+++....|-+. +..+|+++.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~--ga~-V~VIs-p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lVia 76 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDT--GAF-VTVVS-PEICKEMKELPYITWKQKTFSNDDIKDAHLIYA 76 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCE-EEEEc-CccCHHHHhccCcEEEecccChhcCCCceEEEE
Confidence 6788899876443 3334443 345 77776 33333322234666666555333 555687765
No 292
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=65.57 E-value=7.5 Score=30.99 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=26.0
Q ss_pred ceEEeecCC-CCHHHH-HHHHHCCCCCeeEEeechH
Q 032721 67 KRLVDVGGS-AGDCLR-MILQKHPFICEGINFDLPE 100 (135)
Q Consensus 67 ~~vvDvGgG-~G~~~~-~l~~~~p~l~~~~~~D~p~ 100 (135)
..|+-||+| +|..+. .|+++.|..+ ++++|...
T Consensus 25 ~DVvIIGgGi~Gls~A~~La~~~~G~~-V~vlE~~~ 59 (460)
T TIGR03329 25 ADVCIVGGGFTGLWTAIMIKQQRPALD-VLVLEADL 59 (460)
T ss_pred eCEEEECCCHHHHHHHHHHHHhCCCCe-EEEEeCCc
Confidence 468889998 786544 7788788999 99999743
No 293
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=65.54 E-value=13 Score=28.04 Aligned_cols=64 Identities=17% Similarity=0.091 Sum_probs=32.5
Q ss_pred ceEEeecCCC-C-HHHHHHHHHCCCCCeeEEeec-hHHHHhCCCCCCcEEEecCCCCCCCCCcEEEec
Q 032721 67 KRLVDVGGSA-G-DCLRMILQKHPFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMK 131 (135)
Q Consensus 67 ~~vvDvGgG~-G-~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~~rv~~~~gd~~~~~p~~D~~~l~ 131 (135)
.+|.=||+|. | .++..+.+.....+ ++++|. ++..+.+.+..-......+.-+.+..+|++++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~-V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViia 73 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGE-IVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILC 73 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcE-EEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEEC
Confidence 5677788665 2 34444444332235 899998 666665543221111111221113456887764
No 294
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=65.16 E-value=20 Score=27.62 Aligned_cols=48 Identities=35% Similarity=0.477 Sum_probs=34.1
Q ss_pred ecCCCCH----HHHHHHHHCCCCCeeEEeec------hHHHHhCCCCCCcEEEecCCCC
Q 032721 72 VGGSAGD----CLRMILQKHPFICEGINFDL------PEVVAEAPSIPGVTHIGGDMFK 120 (135)
Q Consensus 72 vGgG~G~----~~~~l~~~~p~l~~~~~~D~------p~~~~~a~~~~rv~~~~gd~~~ 120 (135)
|=||.|. +...+++++|+.+ ++++|. ++.+......+|..|+.+|.-+
T Consensus 5 VTGGaGFIGsnfvr~~~~~~~d~~-v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D 62 (340)
T COG1088 5 VTGGAGFIGSNFVRYILNKHPDDH-VVNLDKLTYAGNLENLADVEDSPRYRFVQGDICD 62 (340)
T ss_pred EecCcchHHHHHHHHHHhcCCCce-EEEEecccccCCHHHHHhhhcCCCceEEeccccC
Confidence 4467775 5566778899988 999994 2333334445899999999864
No 295
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=64.84 E-value=7.8 Score=29.51 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=37.6
Q ss_pred HHHHHHHhccccccHHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCC--CCeeEEeechH
Q 032721 39 GLMRKAMSGVSVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPF--ICEGINFDLPE 100 (135)
Q Consensus 39 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~--l~~~~~~D~p~ 100 (135)
......+..........+.+.+..+....+|+=+|||.-.+...|.+.+|. -+ +++.|-|.
T Consensus 246 ~~v~~~i~~~~~~l~~~i~~~~~~~~~~~~I~~vGGGA~ll~~~Ik~~~~~~~~~-i~i~~~pq 308 (318)
T PF06406_consen 246 DDVSEVIEEAVEELINRILRELGDFSDIDRIFFVGGGAILLKDAIKEAFPVPNER-IVIVDDPQ 308 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS-S-SEEEEESTTHHHHHHHHHHHHT--GGG-EE--SSGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEECCcHHHHHHHHHHhhCCCCCc-EEECCCch
Confidence 334444444333334455555433667788999999999999999999874 45 78887664
No 296
>PLN00220 tubulin beta chain; Provisional
Probab=64.63 E-value=16 Score=29.41 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=28.1
Q ss_pred HHHhccCCCCCCcceEEeecCCCCH-----HHHHHHHHCCCCC
Q 032721 54 TSVLDGYDGFKGVKRLVDVGGSAGD-----CLRMILQKHPFIC 91 (135)
Q Consensus 54 ~~~~~~~~~~~~~~~vvDvGgG~G~-----~~~~l~~~~p~l~ 91 (135)
...++..|.+..+..+-.+|||||. ++..|...||+..
T Consensus 121 r~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~y~~~~ 163 (447)
T PLN00220 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM 163 (447)
T ss_pred HHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHhccccc
Confidence 4455666667778899999999973 5557788898754
No 297
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=63.74 E-value=6 Score=29.16 Aligned_cols=51 Identities=29% Similarity=0.223 Sum_probs=39.7
Q ss_pred HHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCC
Q 032721 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAP 106 (135)
Q Consensus 54 ~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~ 106 (135)
..+++.+. --+..+.+|.-=|.|.....|++++|+++ ..++|. |-+-+.|.
T Consensus 33 devl~~ls-pv~g~sf~DmTfGagGHt~~ilqk~se~k-~yalDrDP~A~~La~ 84 (303)
T KOG2782|consen 33 DEVLDILS-PVRGRSFVDMTFGAGGHTSSILQKHSELK-NYALDRDPVARKLAH 84 (303)
T ss_pred hhHHHHcC-CCCCceEEEEeccCCcchHHHHHhCcHhh-hhhhccChHHHHHHH
Confidence 44555543 23357999999999999999999999999 999999 65555554
No 298
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=62.65 E-value=12 Score=28.92 Aligned_cols=44 Identities=20% Similarity=0.010 Sum_probs=33.2
Q ss_pred CCCcceEEeecCCC-CHHHHHHHHHCCCCCeeEEeec-hHHHHhCCC
Q 032721 63 FKGVKRLVDVGGSA-GDCLRMILQKHPFICEGINFDL-PEVVAEAPS 107 (135)
Q Consensus 63 ~~~~~~vvDvGgG~-G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~ 107 (135)
..+..+|+.+|+|. |.++..+++....-+ +++.|. ++..+.+++
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~-vi~~~~~~~~~~~~~~ 227 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAER-VIAIDRVPERLEMARS 227 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCE-EEEEcCCHHHHHHHHH
Confidence 44457899999888 889999999887545 788876 666666544
No 299
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=62.52 E-value=18 Score=26.98 Aligned_cols=61 Identities=18% Similarity=0.154 Sum_probs=40.5
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-CCcEEEecCCCCC-----CCCCcEEEec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKS-----IPAADAIFMK 131 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-~rv~~~~gd~~~~-----~p~~D~~~l~ 131 (135)
+++|+-||.|.+...+.+.. .+.+..+|. +.+++..+.+ +.. .+.+|..+- .+..|+++.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeC
Confidence 58999999999999998864 442577898 7777766554 222 445565432 1234877654
No 300
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=62.45 E-value=40 Score=24.60 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=43.5
Q ss_pred HHHhccCC--CCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-h----HHHHhCCCCCCcEEEecCCC
Q 032721 54 TSVLDGYD--GFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-P----EVVAEAPSIPGVTHIGGDMF 119 (135)
Q Consensus 54 ~~~~~~~~--~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p----~~~~~a~~~~rv~~~~gd~~ 119 (135)
..++..++ ..++..+||-+|..+|.....+..-.++-. +..++. | +.+..+.+.+++--+-+|.-
T Consensus 63 AaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~-iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~ 134 (231)
T COG1889 63 AAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGR-IYAVEFSPRPMRELLDVAEKRPNIIPILEDAR 134 (231)
T ss_pred HHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCc-EEEEEecchhHHHHHHHHHhCCCceeeecccC
Confidence 34554433 266779999999999999999999888655 666775 4 34455555555544445543
No 301
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=61.78 E-value=20 Score=28.65 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=26.1
Q ss_pred HhccCCCCCCcceEEeecCCCC-----HHHHHHHHHCCCCC
Q 032721 56 VLDGYDGFKGVKRLVDVGGSAG-----DCLRMILQKHPFIC 91 (135)
Q Consensus 56 ~~~~~~~~~~~~~vvDvGgG~G-----~~~~~l~~~~p~l~ 91 (135)
.++..|.+.++..+-.+||||| .++..|..+||+..
T Consensus 122 ~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y~~~~ 162 (425)
T cd02187 122 EAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRI 162 (425)
T ss_pred hhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhcCCcc
Confidence 4455555666788999999998 25567888899765
No 302
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=61.77 E-value=7.6 Score=26.20 Aligned_cols=49 Identities=16% Similarity=0.024 Sum_probs=30.7
Q ss_pred EEeecCCCCHHHHHHHHHCCCCCeeEEeechHHHHhCCCC--CCcEEEecCC
Q 032721 69 LVDVGGSAGDCLRMILQKHPFICEGINFDLPEVVAEAPSI--PGVTHIGGDM 118 (135)
Q Consensus 69 vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~p~~~~~a~~~--~rv~~~~gd~ 118 (135)
..=+.||||.=....+.++|+++ +...--|.....++++ .+|-.+.+.+
T Consensus 59 ~GIliCgtGiG~~iaANK~~GIr-Aa~~~d~~~A~~ar~hNdaNVL~lG~~~ 109 (140)
T PF02502_consen 59 RGILICGTGIGMSIAANKVPGIR-AALCSDPYSAKMAREHNDANVLCLGARV 109 (140)
T ss_dssp EEEEEESSSHHHHHHHHTSTT---EEE-SSHHHHHHHHHTT--SEEEEETTT
T ss_pred eEEEEcCCChhhhhHhhcCCCEE-EEeeCCHHHHHHHHHhcCCcEEEechhh
Confidence 34477899999999999999999 6555446666666554 4555544443
No 303
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=61.65 E-value=10 Score=25.69 Aligned_cols=49 Identities=12% Similarity=-0.033 Sum_probs=32.2
Q ss_pred EEeecCCCCHHHHHHHHHCCCCCeeEEeechHHHHhCCCC--CCcEEEecCC
Q 032721 69 LVDVGGSAGDCLRMILQKHPFICEGINFDLPEVVAEAPSI--PGVTHIGGDM 118 (135)
Q Consensus 69 vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~p~~~~~a~~~--~rv~~~~gd~ 118 (135)
.-=+.||||.=....+.++|+++ +.+.--+.....++.+ .+|-.+.+.+
T Consensus 59 ~GIliCGtGiG~siaANK~~GIr-aa~~~d~~~A~~ar~hNnaNvl~lG~r~ 109 (143)
T TIGR01120 59 GGILICGTGIGMSIAANKFAGIR-AALCSEPYMAQMSRLHNDANVLCLGERV 109 (143)
T ss_pred eEEEEcCCcHHHHHHHhcCCCeE-EEEECCHHHHHHHHHhcCCcEEEECcce
Confidence 34467899998888899999999 6555445566666553 3444444333
No 304
>PRK06475 salicylate hydroxylase; Provisional
Probab=61.57 E-value=11 Score=29.37 Aligned_cols=31 Identities=3% Similarity=-0.185 Sum_probs=27.6
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
++|+=||||.+.++.+++-+..+.+ ++++|.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~-V~i~E~ 33 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWA-VTIIEK 33 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCc-EEEEec
Confidence 5788899999999998888888899 999996
No 305
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=61.48 E-value=10 Score=25.73 Aligned_cols=48 Identities=15% Similarity=-0.063 Sum_probs=32.5
Q ss_pred EeecCCCCHHHHHHHHHCCCCCeeEEeechHHHHhCCCC--CCcEEEecCC
Q 032721 70 VDVGGSAGDCLRMILQKHPFICEGINFDLPEVVAEAPSI--PGVTHIGGDM 118 (135)
Q Consensus 70 vDvGgG~G~~~~~l~~~~p~l~~~~~~D~p~~~~~a~~~--~rv~~~~gd~ 118 (135)
-=+.||||.=....+.++|+++ +.+.--+.....++.+ .+|-.+.+.+
T Consensus 59 GIliCGtGiG~siaANK~~GIr-aa~~~d~~~A~~ar~hNnaNVl~lGar~ 108 (144)
T TIGR00689 59 GILICGTGIGMSIAANKFKGIR-AALCVDEYTAALARQHNDANVLCLGSRV 108 (144)
T ss_pred EEEEcCCcHHHHHHHhcCCCeE-EEEECCHHHHHHHHHhcCCcEEEECccc
Confidence 3467899998889999999999 6554446666666654 3444444444
No 306
>PRK06847 hypothetical protein; Provisional
Probab=61.38 E-value=13 Score=28.40 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=26.9
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
...|+=||+|.+.++.++.-+.-+++ ++++|.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~-v~v~E~ 35 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIA-VDLVEI 35 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCC-EEEEec
Confidence 35789999999988888777777888 999986
No 307
>PHA01634 hypothetical protein
Probab=61.37 E-value=18 Score=24.40 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=28.8
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCC
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPS 107 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~ 107 (135)
++|+|||++-|.-++-.+.+ +.++++.++. |...+..++
T Consensus 30 KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~ee 69 (156)
T PHA01634 30 RTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWEE 69 (156)
T ss_pred CEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHHH
Confidence 89999999999988877765 3344888887 555554443
No 308
>PTZ00387 epsilon tubulin; Provisional
Probab=60.59 E-value=19 Score=29.13 Aligned_cols=39 Identities=18% Similarity=0.411 Sum_probs=28.5
Q ss_pred HHHHhccCCCCCCcceEEeecCCCC-----HHHHHHHHHCCCCC
Q 032721 53 MTSVLDGYDGFKGVKRLVDVGGSAG-----DCLRMILQKHPFIC 91 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~~vvDvGgG~G-----~~~~~l~~~~p~l~ 91 (135)
+...++..|.+.++..+..+||||| .++..|...||...
T Consensus 121 Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~lle~l~d~y~~~~ 164 (465)
T PTZ00387 121 VRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRILGMLEDEFPHVF 164 (465)
T ss_pred HHHHHHhccCcceEEEEeecCCCcchhHHHHHHHHHHHhcccCc
Confidence 3445566666667788999999998 36667778888753
No 309
>PTZ00357 methyltransferase; Provisional
Probab=60.58 E-value=20 Score=30.95 Aligned_cols=55 Identities=13% Similarity=-0.027 Sum_probs=35.6
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCC---eeEEeec-hHHH---HhCC-C---C--------CCcEEEecCCCCC
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFIC---EGINFDL-PEVV---AEAP-S---I--------PGVTHIGGDMFKS 121 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~---~~~~~D~-p~~~---~~a~-~---~--------~rv~~~~gd~~~~ 121 (135)
..|+-+|+|.|-+....+++...+. ++.+++- |..+ .... . . .+|+++..|+-+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W 775 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTI 775 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccc
Confidence 4689999999988877776655432 2677776 4422 1111 1 1 3589999999664
No 310
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=60.54 E-value=14 Score=27.51 Aligned_cols=59 Identities=12% Similarity=-0.031 Sum_probs=30.3
Q ss_pred EEeecCCC--CHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCCCCcEEEecCCCCCCCCCcEEEec
Q 032721 69 LVDVGGSA--GDCLRMILQKHPFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMK 131 (135)
Q Consensus 69 vvDvGgG~--G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~~rv~~~~gd~~~~~p~~D~~~l~ 131 (135)
|.=||.|. |.++..+.++ +.+ ++++|. ++.++.+.....+.....+. +.+..+|++++.
T Consensus 3 I~IIG~G~mG~sla~~L~~~--g~~-V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~~~~aDlVila 64 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSL--GHT-VYGVSRRESTCERAIERGLVDEASTDL-SLLKDCDLVILA 64 (279)
T ss_pred EEEEeecHHHHHHHHHHHHC--CCE-EEEEECCHHHHHHHHHCCCcccccCCH-hHhcCCCEEEEc
Confidence 44566543 3444555443 456 999998 76766654332222211121 223346877764
No 311
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=60.36 E-value=11 Score=25.66 Aligned_cols=46 Identities=13% Similarity=-0.026 Sum_probs=31.9
Q ss_pred ecCCCCHHHHHHHHHCCCCCeeEEeechHHHHhCCCC--CCcEEEecCC
Q 032721 72 VGGSAGDCLRMILQKHPFICEGINFDLPEVVAEAPSI--PGVTHIGGDM 118 (135)
Q Consensus 72 vGgG~G~~~~~l~~~~p~l~~~~~~D~p~~~~~a~~~--~rv~~~~gd~ 118 (135)
+-||||.=....+.++|+++ +.+.--+.....++.+ .+|-.+.+.+
T Consensus 64 liCGtGiG~siaANK~~GIR-AA~~~d~~~A~~ar~hNnaNVL~lG~r~ 111 (148)
T PRK05571 64 LICGTGIGMSIAANKVKGIR-AALCHDTYSAHLAREHNNANVLALGARV 111 (148)
T ss_pred EEcCCcHHHHHHHhcCCCeE-EEEECCHHHHHHHHHhcCCcEEEECccc
Confidence 56899998888999999999 6555446666666654 3444444433
No 312
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=59.86 E-value=19 Score=23.17 Aligned_cols=51 Identities=24% Similarity=0.274 Sum_probs=32.5
Q ss_pred HhccCCCCCCcceEEeecCCCCH-HHHHHHHHCCCCCeeEEeechHHHHhCC
Q 032721 56 VLDGYDGFKGVKRLVDVGGSAGD-CLRMILQKHPFICEGINFDLPEVVAEAP 106 (135)
Q Consensus 56 ~~~~~~~~~~~~~vvDvGgG~G~-~~~~l~~~~p~l~~~~~~D~p~~~~~a~ 106 (135)
+++.++.-.+.-.++|+-||+-. .+..+...++++..++++++|-+++...
T Consensus 50 ~i~~~~~~~~viil~Dl~GGSp~n~~~~~~~~~~~~~visG~nlpmlle~~~ 101 (122)
T cd00006 50 ALAELDSGEGVLILTDLFGGSPNNAAARLSMEHPPVEVIAGVNLPMLLEAAR 101 (122)
T ss_pred HHHHhCCCCcEEEEEeCCCCCHHHHHHHHHhcCCCEEEEEccCHHHHHHHHH
Confidence 33444322345678999666665 5556666656665478899998887653
No 313
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=59.55 E-value=17 Score=25.35 Aligned_cols=48 Identities=10% Similarity=0.034 Sum_probs=32.9
Q ss_pred HHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhC
Q 032721 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEA 105 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a 105 (135)
++.++..+- .+...|+|-=||+|..+.+..+..-. ++++|+ |..++.|
T Consensus 181 ~~~lI~~~t--~~gdiVlDpF~GSGTT~~aa~~l~R~---~ig~E~~~~y~~~a 229 (231)
T PF01555_consen 181 IERLIKAST--NPGDIVLDPFAGSGTTAVAAEELGRR---YIGIEIDEEYCEIA 229 (231)
T ss_dssp HHHHHHHHS---TT-EEEETT-TTTHHHHHHHHTT-E---EEEEESSHHHHHHH
T ss_pred HHHHHHhhh--ccceeeehhhhccChHHHHHHHcCCe---EEEEeCCHHHHHHh
Confidence 444555442 23479999999999999988887433 999999 7776655
No 314
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=59.01 E-value=28 Score=26.37 Aligned_cols=51 Identities=12% Similarity=0.160 Sum_probs=33.4
Q ss_pred eEEeecCCCCHHHHHHHHHC---CCCCeeEEeec-hHHHHhCCCCCCcEEEecCCCC
Q 032721 68 RLVDVGGSAGDCLRMILQKH---PFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFK 120 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~---p~l~~~~~~D~-p~~~~~a~~~~rv~~~~gd~~~ 120 (135)
+|+ |=||+|.++..|+++. .+.+ ++++|. +..........+++++.+|+.+
T Consensus 3 ~il-VtGatGfiGs~l~~~L~~~~~~~-V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~ 57 (347)
T PRK11908 3 KVL-ILGVNGFIGHHLSKRILETTDWE-VYGMDMQTDRLGDLVNHPRMHFFEGDITI 57 (347)
T ss_pred EEE-EECCCcHHHHHHHHHHHhCCCCe-EEEEeCcHHHHHHhccCCCeEEEeCCCCC
Confidence 455 4457999888887764 3456 888887 3322222223568999999973
No 315
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=58.22 E-value=25 Score=23.71 Aligned_cols=55 Identities=27% Similarity=0.326 Sum_probs=34.4
Q ss_pred ecCCCCHHHHHHHHHCC--CCCeeEEeec-hHHHHhCCCCCCcEEEecCCCCC--C----CCCcEEEe
Q 032721 72 VGGSAGDCLRMILQKHP--FICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS--I----PAADAIFM 130 (135)
Q Consensus 72 vGgG~G~~~~~l~~~~p--~l~~~~~~D~-p~~~~~a~~~~rv~~~~gd~~~~--~----p~~D~~~l 130 (135)
|=|++|.++..++++-- +.+ ++++-+ +.-.+. ..+++.+.+|+++. + ..+|.++.
T Consensus 3 V~GatG~vG~~l~~~L~~~~~~-V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~ 66 (183)
T PF13460_consen 3 VFGATGFVGRALAKQLLRRGHE-VTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIH 66 (183)
T ss_dssp EETTTSHHHHHHHHHHHHTTSE-EEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEE
T ss_pred EECCCChHHHHHHHHHHHCCCE-EEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhh
Confidence 34578876666655332 144 777766 443443 67899999999875 2 23477764
No 316
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=58.10 E-value=22 Score=28.63 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=28.5
Q ss_pred HHHhccCCCCCCcceEEeecCCCCH-----HHHHHHHHCCCCC
Q 032721 54 TSVLDGYDGFKGVKRLVDVGGSAGD-----CLRMILQKHPFIC 91 (135)
Q Consensus 54 ~~~~~~~~~~~~~~~vvDvGgG~G~-----~~~~l~~~~p~l~ 91 (135)
...++..|.+..+..+-.+|||||. ++..|...||...
T Consensus 117 r~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~~~~ 159 (446)
T cd02189 117 RKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPESL 159 (446)
T ss_pred HHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhcCccc
Confidence 3446666767777889999999983 6667888898754
No 317
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=57.99 E-value=22 Score=28.51 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=27.1
Q ss_pred HHHhccCCCCCCcceEEeecCCCCH-----HHHHHHHHCCCCC
Q 032721 54 TSVLDGYDGFKGVKRLVDVGGSAGD-----CLRMILQKHPFIC 91 (135)
Q Consensus 54 ~~~~~~~~~~~~~~~vvDvGgG~G~-----~~~~l~~~~p~l~ 91 (135)
...++..|.+..+..+-.+|||||. ++..|...||...
T Consensus 122 r~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y~~~~ 164 (434)
T cd02186 122 RKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDYGKKS 164 (434)
T ss_pred HHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhcCccc
Confidence 3344555556677889999999973 6667888999654
No 318
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=57.77 E-value=33 Score=26.71 Aligned_cols=58 Identities=16% Similarity=0.140 Sum_probs=41.6
Q ss_pred cCCCCCCcceEEeecCCCCHHHHHHHHHCCC--CCeeEEeec-hHHHHhCCCC------CCcEEEecCC
Q 032721 59 GYDGFKGVKRLVDVGGSAGDCLRMILQKHPF--ICEGINFDL-PEVVAEAPSI------PGVTHIGGDM 118 (135)
Q Consensus 59 ~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~--l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~ 118 (135)
.++ -....+|+|...+.|.=+..+++.-++ .. ++.+|. +.-+.....+ .++..+..|.
T Consensus 151 ~L~-p~pge~VlD~cAAPGGKTthla~~~~~~~~i-V~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~ 217 (355)
T COG0144 151 VLD-PKPGERVLDLCAAPGGKTTHLAELMENEGAI-VVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA 217 (355)
T ss_pred HcC-CCCcCEEEEECCCCCCHHHHHHHhcCCCCce-EEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc
Confidence 344 445589999999999988888888876 44 689998 6666655432 4456666664
No 319
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=57.49 E-value=13 Score=29.09 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=24.6
Q ss_pred eEEeecCCC--CHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSA--GDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~--G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.||-||.|. |-....++.++|++. ++++|.
T Consensus 3 kiccigagyvggptcavia~kcp~i~-vtvvd~ 34 (481)
T KOG2666|consen 3 KICCIGAGYVGGPTCAVIALKCPDIE-VTVVDI 34 (481)
T ss_pred eEEEecCcccCCcchheeeecCCceE-EEEEec
Confidence 577788764 556777888999999 999998
No 320
>CHL00194 ycf39 Ycf39; Provisional
Probab=57.31 E-value=30 Score=25.92 Aligned_cols=57 Identities=19% Similarity=0.092 Sum_probs=34.0
Q ss_pred ecCCCCHHHHHHHHHC--CCCCeeEEeech-HHHHhCCCCCCcEEEecCCCCC--CC----CCcEEEe
Q 032721 72 VGGSAGDCLRMILQKH--PFICEGINFDLP-EVVAEAPSIPGVTHIGGDMFKS--IP----AADAIFM 130 (135)
Q Consensus 72 vGgG~G~~~~~l~~~~--p~l~~~~~~D~p-~~~~~a~~~~rv~~~~gd~~~~--~p----~~D~~~l 130 (135)
|=||+|.++..++++. .+.+ ++++.+. .-.... ...+++++.+|+.++ +. ..|+++.
T Consensus 5 VtGatG~iG~~lv~~Ll~~g~~-V~~l~R~~~~~~~l-~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~ 70 (317)
T CHL00194 5 VIGATGTLGRQIVRQALDEGYQ-VRCLVRNLRKASFL-KEWGAELVYGDLSLPETLPPSFKGVTAIID 70 (317)
T ss_pred EECCCcHHHHHHHHHHHHCCCe-EEEEEcChHHhhhH-hhcCCEEEECCCCCHHHHHHHHCCCCEEEE
Confidence 4467998887776653 2345 8888763 221111 124789999999764 22 2476653
No 321
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=56.53 E-value=5 Score=25.39 Aligned_cols=19 Identities=21% Similarity=0.473 Sum_probs=13.3
Q ss_pred EEeecCCCCHHHHHHHHHC
Q 032721 69 LVDVGGSAGDCLRMILQKH 87 (135)
Q Consensus 69 vvDvGgG~G~~~~~l~~~~ 87 (135)
=+|||||.|....+-.+..
T Consensus 6 NIDIGcG~GNTmda~fRsc 24 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAFRSC 24 (124)
T ss_pred ccccccCCCcchhhhhhcc
Confidence 4799999998655544443
No 322
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=56.27 E-value=11 Score=25.87 Aligned_cols=30 Identities=13% Similarity=0.108 Sum_probs=25.3
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.|+=||||.+.+..+..-..++.+ ++++|.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~-v~ii~~ 30 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAK-VLIIEK 30 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE-EEEESS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCe-EEEEec
Confidence 377899999999888888888888 988864
No 323
>COG5023 Tubulin [Cytoskeleton]
Probab=56.04 E-value=17 Score=28.75 Aligned_cols=39 Identities=28% Similarity=0.481 Sum_probs=29.1
Q ss_pred HHHHhccCCCCCCcceEEeecCCCCH-----HHHHHHHHCCCCC
Q 032721 53 MTSVLDGYDGFKGVKRLVDVGGSAGD-----CLRMILQKHPFIC 91 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~~vvDvGgG~G~-----~~~~l~~~~p~l~ 91 (135)
++..++..|.++++...=-+|||||. ++..|..+||.-.
T Consensus 120 IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eypkK~ 163 (443)
T COG5023 120 IRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYPKKI 163 (443)
T ss_pred HHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcchhh
Confidence 34555666677777788889999984 6678888999744
No 324
>PRK08163 salicylate hydroxylase; Provisional
Probab=55.64 E-value=16 Score=28.17 Aligned_cols=31 Identities=16% Similarity=0.095 Sum_probs=27.6
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
..|+=||+|.+.++.+++-+..+++ ++++|.
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~~g~~-v~v~Er 35 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALARQGIK-VKLLEQ 35 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCc-EEEEee
Confidence 4688899999999998888888899 999997
No 325
>PLN00222 tubulin gamma chain; Provisional
Probab=55.51 E-value=26 Score=28.31 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=27.0
Q ss_pred HHhccCCCCCCcceEEeecCCCC-----HHHHHHHHHCCCCC
Q 032721 55 SVLDGYDGFKGVKRLVDVGGSAG-----DCLRMILQKHPFIC 91 (135)
Q Consensus 55 ~~~~~~~~~~~~~~vvDvGgG~G-----~~~~~l~~~~p~l~ 91 (135)
..++..|.+..+..+-.+||||| .++..|...||...
T Consensus 124 ~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~d~y~~~~ 165 (454)
T PLN00222 124 READGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKL 165 (454)
T ss_pred HHHHhCCCccceEEeecCCCCccchHHHHHHHHHHhhcCCcc
Confidence 34455555677788899999997 36677888898754
No 326
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=55.44 E-value=22 Score=28.94 Aligned_cols=68 Identities=10% Similarity=-0.053 Sum_probs=44.3
Q ss_pred HHHHHHHHhcccc------ccHHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCC----CCCeeEEeec-hHHHHhCC
Q 032721 38 NGLMRKAMSGVSV------PFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHP----FICEGINFDL-PEVVAEAP 106 (135)
Q Consensus 38 ~~~f~~~m~~~~~------~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p----~l~~~~~~D~-p~~~~~a~ 106 (135)
.+.|..+...... .+..-+++.+. .....+|.|-.||+|.++....+... ++. ..+++. +.+...++
T Consensus 154 l~~fa~~~~k~~GEfyTP~~v~~liv~~l~-~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~-~yGqE~~~~t~~l~~ 231 (489)
T COG0286 154 LRKFAEAEGKEAGEFYTPREVSELIVELLD-PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIF-IYGQEINDTTYRLAK 231 (489)
T ss_pred HHHHHHhcCCCCCccCChHHHHHHHHHHcC-CCCCCeecCCCCchhHHHHHHHHHHHhhcccee-EEEEeCCHHHHHHHH
Confidence 4556666655322 12344555554 34557999999999988876666543 366 889997 77777765
Q ss_pred C
Q 032721 107 S 107 (135)
Q Consensus 107 ~ 107 (135)
.
T Consensus 232 m 232 (489)
T COG0286 232 M 232 (489)
T ss_pred H
Confidence 4
No 327
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=55.23 E-value=18 Score=21.92 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=17.9
Q ss_pred CCCcceEEeecCCCCH-HHHHHHHHC
Q 032721 63 FKGVKRLVDVGGSAGD-CLRMILQKH 87 (135)
Q Consensus 63 ~~~~~~vvDvGgG~G~-~~~~l~~~~ 87 (135)
.+..++||-||+.+|. ++..|+..+
T Consensus 36 ~~GpK~VLViGaStGyGLAsRIa~aF 61 (78)
T PF12242_consen 36 INGPKKVLVIGASTGYGLASRIAAAF 61 (78)
T ss_dssp -TS-SEEEEES-SSHHHHHHHHHHHH
T ss_pred CCCCceEEEEecCCcccHHHHHHHHh
Confidence 5567899999999996 676777776
No 328
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=55.16 E-value=38 Score=26.66 Aligned_cols=59 Identities=15% Similarity=0.089 Sum_probs=38.8
Q ss_pred EEeecCCCCHHHHHHHHHCC--CCCeeEEeec-hHHHHhCCCCCCcEEEecCCCCC-------CCCCcEEEe
Q 032721 69 LVDVGGSAGDCLRMILQKHP--FICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS-------IPAADAIFM 130 (135)
Q Consensus 69 vvDvGgG~G~~~~~l~~~~p--~l~~~~~~D~-p~~~~~a~~~~rv~~~~gd~~~~-------~p~~D~~~l 130 (135)
|+=+|+ |.++..+++..- +.+ ++++|. ++.++.++....+.++.||..+. +..+|.+++
T Consensus 3 viIiG~--G~ig~~~a~~L~~~g~~-v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~ 71 (453)
T PRK09496 3 IIIVGA--GQVGYTLAENLSGENND-VTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIA 71 (453)
T ss_pred EEEECC--CHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEE
Confidence 444554 777777777432 456 899998 77777665445678888998754 223576665
No 329
>PF09959 DUF2193: Uncharacterized protein conserved in archaea (DUF2193); InterPro: IPR018694 This family of various hypothetical archaeal proteins has no known function
Probab=55.15 E-value=12 Score=29.72 Aligned_cols=81 Identities=17% Similarity=0.242 Sum_probs=51.6
Q ss_pred hhhHHHHhhCCCCChhhhhhC-CCccccc-ccCchHHHHHH---HHHhccccccHHHHhccCCCCCCcceEEeecCCCCH
Q 032721 4 WPLVHEAVLDPTIEPFVKVHG-EPAYSYY-GKKPEMNGLMR---KAMSGVSVPFMTSVLDGYDGFKGVKRLVDVGGSAGD 78 (135)
Q Consensus 4 w~~L~~~vr~g~~~~~~~~~g-~~~~e~~-~~~~~~~~~f~---~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~ 78 (135)
...|+++||--. .||-.-+. ..+.|.+ ++||.++++-. ++..........+.++.|.+|-++..|||..--.|.
T Consensus 71 L~~LT~tvrPeD-DPFVEhyQTP~ilEILy~eD~~F~ks~~kfi~~I~~sealIg~E~~RrygGFYGpTcVvDFAliPGS 149 (499)
T PF09959_consen 71 LKSLTDTVRPED-DPFVEHYQTPAILEILYEEDPAFRKSVEKFIEAIGKSEALIGKESARRYGGFYGPTCVVDFALIPGS 149 (499)
T ss_pred HHHHhcccCCCC-CchHhhccccHHHHHHHhcCHHHHHHHHHHHHHHhhhHHHhhHHHHHHhcCccCCceeeeeeecCCc
Confidence 456778887555 66665443 3344544 35777666444 444444445667788888888899999998876665
Q ss_pred HHHHHHH
Q 032721 79 CLRMILQ 85 (135)
Q Consensus 79 ~~~~l~~ 85 (135)
.+.-+.+
T Consensus 150 TsNVVN~ 156 (499)
T PF09959_consen 150 TSNVVNQ 156 (499)
T ss_pred hHHHHHH
Confidence 5544433
No 330
>PTZ00335 tubulin alpha chain; Provisional
Probab=55.06 E-value=24 Score=28.42 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=27.2
Q ss_pred HHHhccCCCCCCcceEEeecCCCCH-----HHHHHHHHCCCCC
Q 032721 54 TSVLDGYDGFKGVKRLVDVGGSAGD-----CLRMILQKHPFIC 91 (135)
Q Consensus 54 ~~~~~~~~~~~~~~~vvDvGgG~G~-----~~~~l~~~~p~l~ 91 (135)
...++..|.+..+..+-.+|||||. ++..|...||...
T Consensus 123 r~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~yp~~~ 165 (448)
T PTZ00335 123 RKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKS 165 (448)
T ss_pred HHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHhccccc
Confidence 3444555656677888999999973 5567888898754
No 331
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=54.41 E-value=19 Score=28.58 Aligned_cols=31 Identities=23% Similarity=0.198 Sum_probs=24.4
Q ss_pred ceEEeecCCCCHH--HHHHHHHCCCCCeeEEeec
Q 032721 67 KRLVDVGGSAGDC--LRMILQKHPFICEGINFDL 98 (135)
Q Consensus 67 ~~vvDvGgG~G~~--~~~l~~~~p~l~~~~~~D~ 98 (135)
.+||=||||.|.+ +..+++..|+.+ ++++|.
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~-I~li~~ 34 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESD-IIIFEK 34 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCC-EEEEEC
Confidence 3689999999854 456666778888 999986
No 332
>PLN00221 tubulin alpha chain; Provisional
Probab=54.40 E-value=23 Score=28.54 Aligned_cols=39 Identities=21% Similarity=0.312 Sum_probs=28.8
Q ss_pred HHHHhccCCCCCCcceEEeecCCCCH-----HHHHHHHHCCCCC
Q 032721 53 MTSVLDGYDGFKGVKRLVDVGGSAGD-----CLRMILQKHPFIC 91 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~~vvDvGgG~G~-----~~~~l~~~~p~l~ 91 (135)
++..++..|.+..+..+-.+|||||. ++..|...||...
T Consensus 122 ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~y~~~~ 165 (450)
T PLN00221 122 IRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKS 165 (450)
T ss_pred HHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHhccccc
Confidence 34556666767778899999999974 5557788888653
No 333
>PRK15076 alpha-galactosidase; Provisional
Probab=54.33 E-value=15 Score=29.46 Aligned_cols=62 Identities=16% Similarity=0.107 Sum_probs=35.5
Q ss_pred eEEeecCCC-CHHH---HHHH--HHCCCCCeeEEeec-hHHHHhCCC--------C-CCcEEE-ecCCCCCCCCCcEEEe
Q 032721 68 RLVDVGGSA-GDCL---RMIL--QKHPFICEGINFDL-PEVVAEAPS--------I-PGVTHI-GGDMFKSIPAADAIFM 130 (135)
Q Consensus 68 ~vvDvGgG~-G~~~---~~l~--~~~p~l~~~~~~D~-p~~~~~a~~--------~-~rv~~~-~gd~~~~~p~~D~~~l 130 (135)
+|.=||+|+ |... ..++ ...+..+ ++++|. ++.++.+.. . ..+++. ..|..+.+..+|+++.
T Consensus 3 KIaIIGaGsvg~~~~~~~~i~~~~~l~~~e-vvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 3 KITFIGAGSTVFTKNLLGDILSVPALRDAE-IALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred EEEEECCCHHHhHHHHHHHHhhCccCCCCE-EEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 577799988 6322 2333 3445556 999998 655553221 1 223333 4565444667788875
No 334
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=54.27 E-value=44 Score=22.65 Aligned_cols=51 Identities=18% Similarity=0.071 Sum_probs=37.6
Q ss_pred ecCCCCHH------HHHHHHHCCCCCeeEEeec---hHHHHhCCCC-CCcEEEecCCCCCCCC
Q 032721 72 VGGSAGDC------LRMILQKHPFICEGINFDL---PEVVAEAPSI-PGVTHIGGDMFKSIPA 124 (135)
Q Consensus 72 vGgG~G~~------~~~l~~~~p~l~~~~~~D~---p~~~~~a~~~-~rv~~~~gd~~~~~p~ 124 (135)
=+...+++ ...+.+.+|+-+ .+++|| +.-++..++. .++++..-|+ +..|.
T Consensus 66 Sa~S~~h~~~~~~~i~si~~~~P~~k-~ilY~LgL~~~~i~~L~~~~~n~evr~Fn~-s~YP~ 126 (142)
T PF07801_consen 66 SATSDNHFNESMKSISSIRKFYPNHK-IILYDLGLSEEQIKKLKKNFCNVEVRKFNF-SKYPK 126 (142)
T ss_pred EEecchHHHHHHHHHHHHHHHCCCCc-EEEEeCCCCHHHHHHHHhcCCceEEEECCC-ccCcH
Confidence 34455553 456777999999 999997 5667777765 8899999888 55774
No 335
>PRK07236 hypothetical protein; Provisional
Probab=54.23 E-value=17 Score=28.04 Aligned_cols=31 Identities=26% Similarity=0.253 Sum_probs=27.0
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
..|+=||||.+.++.++.-+..+++ ++++|.
T Consensus 7 ~~ViIVGaG~aGl~~A~~L~~~G~~-v~v~E~ 37 (386)
T PRK07236 7 PRAVVIGGSLGGLFAALLLRRAGWD-VDVFER 37 (386)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCC-EEEEec
Confidence 5789999999988888887777899 999997
No 336
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=54.16 E-value=26 Score=27.52 Aligned_cols=33 Identities=15% Similarity=0.027 Sum_probs=25.3
Q ss_pred CcceEEeecCCCCHH--HHHHHHHCCCCCeeEEeec
Q 032721 65 GVKRLVDVGGSAGDC--LRMILQKHPFICEGINFDL 98 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~--~~~l~~~~p~l~~~~~~D~ 98 (135)
+.-.|+-||||+|.+ +..+.++.|.-+ +.++|.
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~-vgIvep 72 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGS-VGIVEP 72 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCc-eEEecc
Confidence 346788999999965 556778888877 777774
No 337
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=53.81 E-value=33 Score=28.65 Aligned_cols=51 Identities=16% Similarity=0.025 Sum_probs=34.0
Q ss_pred ceEEeecCCCCHHHHHHHHH--CCCCCeeEEeec-hHHHHhCCCCCCcEEEecCCCCC
Q 032721 67 KRLVDVGGSAGDCLRMILQK--HPFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS 121 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~--~p~l~~~~~~D~-p~~~~~a~~~~rv~~~~gd~~~~ 121 (135)
.+++=+| .|.++..+++. ..+.+ ++++|. |+.++.+++ .....+.||..++
T Consensus 401 ~~vII~G--~Gr~G~~va~~L~~~g~~-vvvID~d~~~v~~~~~-~g~~v~~GDat~~ 454 (601)
T PRK03659 401 PQVIIVG--FGRFGQVIGRLLMANKMR-ITVLERDISAVNLMRK-YGYKVYYGDATQL 454 (601)
T ss_pred CCEEEec--CchHHHHHHHHHHhCCCC-EEEEECCHHHHHHHHh-CCCeEEEeeCCCH
Confidence 3555555 55555555543 23557 999999 888888765 4567788998654
No 338
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=53.54 E-value=80 Score=23.46 Aligned_cols=67 Identities=13% Similarity=0.143 Sum_probs=39.8
Q ss_pred HHhccCCCCCCcceEEeecC-CCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCCCCcEEEecCCCCCCCC-CcEEE
Q 032721 55 SVLDGYDGFKGVKRLVDVGG-SAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPA-ADAIF 129 (135)
Q Consensus 55 ~~~~~~~~~~~~~~vvDvGg-G~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~~rv~~~~gd~~~~~p~-~D~~~ 129 (135)
++..-++ -.+.+.++=+|+ =+|.+....+...- + ++++|+ |.+.... .++|.|.. +..+.+. .|+++
T Consensus 32 ai~~~le-~~~~k~~lI~G~YltG~~iA~~L~~~~--e-V~lvDI~p~lk~ll--~~~i~F~~--~~~~~~~~~DlII 101 (252)
T PF06690_consen 32 AIKYWLE-GEEFKQALIFGAYLTGNFIASALSKKC--E-VTLVDIHPHLKELL--NENIKFME--FRNGLEGNPDLII 101 (252)
T ss_pred HHHHHhc-ccccceEEEEEEEeehHHHHHHhccCc--e-EEEEeCcHHHHHHh--cCCCceee--ccCCCCCCCCEEE
Confidence 3444343 333457777887 46776666665544 6 999999 7777765 46777763 2223332 36654
No 339
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=53.49 E-value=34 Score=28.10 Aligned_cols=51 Identities=18% Similarity=0.144 Sum_probs=34.6
Q ss_pred ceEEeecCCCCHHHHHHHHHC--CCCCeeEEeec-hHHHHhCCCCCCcEEEecCCCCC
Q 032721 67 KRLVDVGGSAGDCLRMILQKH--PFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS 121 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~--p~l~~~~~~D~-p~~~~~a~~~~rv~~~~gd~~~~ 121 (135)
.+++=+| .|.++..++++- .+.+ ++++|. ++.++.+++ ..+..+.||..++
T Consensus 418 ~hiiI~G--~G~~G~~la~~L~~~g~~-vvvId~d~~~~~~~~~-~g~~~i~GD~~~~ 471 (558)
T PRK10669 418 NHALLVG--YGRVGSLLGEKLLAAGIP-LVVIETSRTRVDELRE-RGIRAVLGNAANE 471 (558)
T ss_pred CCEEEEC--CChHHHHHHHHHHHCCCC-EEEEECCHHHHHHHHH-CCCeEEEcCCCCH
Confidence 3445455 556666666543 2456 999998 888887765 5688889998765
No 340
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=53.43 E-value=18 Score=24.84 Aligned_cols=39 Identities=21% Similarity=0.080 Sum_probs=27.8
Q ss_pred EEeecCCCCHHHHHHHHHCCCCCeeEEeechHHHHhCCCC
Q 032721 69 LVDVGGSAGDCLRMILQKHPFICEGINFDLPEVVAEAPSI 108 (135)
Q Consensus 69 vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~p~~~~~a~~~ 108 (135)
..=+.||||.=..-.+.++|.++-..+.| +.....++++
T Consensus 61 ~GIliCGTGiG~~iaANKv~GiraAl~~D-~~sA~~ar~h 99 (151)
T COG0698 61 LGILICGTGIGMSIAANKVPGIRAALVSD-PTSAKLAREH 99 (151)
T ss_pred eeEEEecCChhHHHHhhccCCeEEEEecC-HHHHHHHHhc
Confidence 44578899998888999999999334455 5555555553
No 341
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=53.10 E-value=7.4 Score=28.50 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=20.1
Q ss_pred CCC-cceEEeecCCCCHHHHHHHHHCCC
Q 032721 63 FKG-VKRLVDVGGSAGDCLRMILQKHPF 89 (135)
Q Consensus 63 ~~~-~~~vvDvGgG~G~~~~~l~~~~p~ 89 (135)
|.. ..+++|+|.|.|.+...++..+.+
T Consensus 109 w~~~~~~lLDlGAGdGeit~~m~p~fee 136 (288)
T KOG3987|consen 109 WGQEPVTLLDLGAGDGEITLRMAPTFEE 136 (288)
T ss_pred cCCCCeeEEeccCCCcchhhhhcchHHH
Confidence 543 479999999999888776655443
No 342
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=52.81 E-value=18 Score=25.33 Aligned_cols=39 Identities=15% Similarity=-0.105 Sum_probs=28.0
Q ss_pred EEeecCCCCHHHHHHHHHCCCCCeeEEeechHHHHhCCCC
Q 032721 69 LVDVGGSAGDCLRMILQKHPFICEGINFDLPEVVAEAPSI 108 (135)
Q Consensus 69 vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~p~~~~~a~~~ 108 (135)
.-=+.||||.=....+.++|+++ +.+.--+.....++++
T Consensus 60 ~GIliCGTGiG~siaANK~~GIR-AA~~~d~~~A~~ar~h 98 (171)
T PRK12615 60 LGVCICGTGVGINNAVNKVPGIR-SALVRDMTTALYAKEE 98 (171)
T ss_pred EEEEEcCCcHHHHHHHhcCCCeE-EEEeCCHHHHHHHHHh
Confidence 34467899998888899999999 5444436666666654
No 343
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=52.73 E-value=11 Score=21.77 Aligned_cols=26 Identities=8% Similarity=-0.024 Sum_probs=15.8
Q ss_pred ecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 72 VGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 72 vGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
||+|.+.++.+..-+.-+.+ ++++|.
T Consensus 2 iGaG~sGl~aA~~L~~~g~~-v~v~E~ 27 (68)
T PF13450_consen 2 IGAGISGLAAAYYLAKAGYR-VTVFEK 27 (68)
T ss_dssp ES-SHHHHHHHHHHHHTTSE-EEEEES
T ss_pred EeeCHHHHHHHHHHHHCCCc-EEEEec
Confidence 68886655444333333667 999996
No 344
>PLN02206 UDP-glucuronate decarboxylase
Probab=52.61 E-value=41 Score=26.89 Aligned_cols=61 Identities=26% Similarity=0.179 Sum_probs=36.2
Q ss_pred ceEEeecCCCCHHHHHHHHHCC--CCCeeEEeech-----HHHHhCCCCCCcEEEecCCCCCC-CCCcEEE
Q 032721 67 KRLVDVGGSAGDCLRMILQKHP--FICEGINFDLP-----EVVAEAPSIPGVTHIGGDMFKSI-PAADAIF 129 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p--~l~~~~~~D~p-----~~~~~a~~~~rv~~~~gd~~~~~-p~~D~~~ 129 (135)
.+|+=. ||+|.++..|+++.- +.+ ++++|.. +.+.......+++++.+|..+.. -..|.|+
T Consensus 120 ~kILVT-GatGfIGs~Lv~~Ll~~G~~-V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~l~~~D~Vi 188 (442)
T PLN02206 120 LRVVVT-GGAGFVGSHLVDRLMARGDS-VIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEPILLEVDQIY 188 (442)
T ss_pred CEEEEE-CcccHHHHHHHHHHHHCcCE-EEEEeCCCccchhhhhhhccCCceEEEECCccChhhcCCCEEE
Confidence 567744 479988877776442 345 8888741 11111112357899999987763 2347654
No 345
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=52.60 E-value=21 Score=25.50 Aligned_cols=46 Identities=22% Similarity=0.369 Sum_probs=29.7
Q ss_pred HHHhccCCCCCCcceEEeecCCCCH-----HHHHHHHHCCCCCeeEEeec-hH
Q 032721 54 TSVLDGYDGFKGVKRLVDVGGSAGD-----CLRMILQKHPFICEGINFDL-PE 100 (135)
Q Consensus 54 ~~~~~~~~~~~~~~~vvDvGgG~G~-----~~~~l~~~~p~l~~~~~~D~-p~ 100 (135)
...++..+.....-.+.-+|||||. ++..+...||+.. +..+-. |.
T Consensus 115 r~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~-~~~~~ilP~ 166 (216)
T PF00091_consen 115 RKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKP-IISFSILPF 166 (216)
T ss_dssp HHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSE-EEEEEEE-C
T ss_pred chhhccccccccceecccccceeccccccccchhhhccccccc-eeecccccc
Confidence 3444444545556788899999884 6667788888876 554443 54
No 346
>PRK09126 hypothetical protein; Provisional
Probab=52.36 E-value=18 Score=27.84 Aligned_cols=30 Identities=10% Similarity=-0.117 Sum_probs=25.9
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.|+=||||.+.++.++.-+..+++ ++++|.
T Consensus 5 dviIvGgG~aGl~~A~~L~~~G~~-v~v~E~ 34 (392)
T PRK09126 5 DIVVVGAGPAGLSFARSLAGSGLK-VTLIER 34 (392)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCc-EEEEeC
Confidence 477799999998888887777899 999997
No 347
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=52.35 E-value=18 Score=28.78 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=25.7
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
+|+=||||+|.+..++.....+++ ++++|.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~-V~lie~ 31 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKN-VTLIDE 31 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc-EEEEEC
Confidence 578899999988888887778888 999986
No 348
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=52.09 E-value=13 Score=27.68 Aligned_cols=30 Identities=10% Similarity=-0.036 Sum_probs=22.8
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.|+=||||.+.++.++.-+.-+++ ++++|.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~ 32 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGID-VTIIER 32 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCE-EEEEES
T ss_pred eEEEECCCHHHHHHHHHHHhcccc-cccchh
Confidence 477899998888877777777788 999996
No 349
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=51.83 E-value=27 Score=27.51 Aligned_cols=61 Identities=25% Similarity=0.254 Sum_probs=39.9
Q ss_pred ceEEeecCCCCHHHHHHHHHCC--CCCeeEEeec-hHHHHhCCCC-CCcEEEecCCCCC--C-----CCCcEEEe
Q 032721 67 KRLVDVGGSAGDCLRMILQKHP--FICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKS--I-----PAADAIFM 130 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p--~l~~~~~~D~-p~~~~~a~~~-~rv~~~~gd~~~~--~-----p~~D~~~l 130 (135)
.+++=+|+ |.++..+++... +.. ++++|. |+.++..+.. ..+.++.||..+. + ..+|+++.
T Consensus 232 ~~iiIiG~--G~~g~~l~~~L~~~~~~-v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~ 303 (453)
T PRK09496 232 KRVMIVGG--GNIGYYLAKLLEKEGYS-VKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIA 303 (453)
T ss_pred CEEEEECC--CHHHHHHHHHHHhCCCe-EEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEE
Confidence 56776776 666666665443 345 899998 7777765543 5678889998654 2 23576654
No 350
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=51.74 E-value=11 Score=30.81 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=17.0
Q ss_pred HHHhccCCCCCCcceEEeecCCCCH
Q 032721 54 TSVLDGYDGFKGVKRLVDVGGSAGD 78 (135)
Q Consensus 54 ~~~~~~~~~~~~~~~vvDvGgG~G~ 78 (135)
-.++..++ +.+...++|||||+=.
T Consensus 119 lGv~~~~~-~~~~~lv~DIGGGStE 142 (492)
T COG0248 119 LGVASTLP-RKGDGLVIDIGGGSTE 142 (492)
T ss_pred HHHHhcCC-CCCCEEEEEecCCeEE
Confidence 34556666 5566899999999843
No 351
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=51.30 E-value=24 Score=27.46 Aligned_cols=45 Identities=13% Similarity=0.084 Sum_probs=36.7
Q ss_pred CCCcceEEeecCCC-CHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC
Q 032721 63 FKGVKRLVDVGGSA-GDCLRMILQKHPFICEGINFDL-PEVVAEAPSI 108 (135)
Q Consensus 63 ~~~~~~vvDvGgG~-G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~ 108 (135)
+....++|=+|.|+ |.+....++.....+ +++.|+ +..++.|++.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~-VVi~d~~~~Rle~Ak~~ 213 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASD-VVITDLVANRLELAKKF 213 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCc-EEEeecCHHHHHHHHHh
Confidence 44557899999987 667777788887777 999999 9999999874
No 352
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=50.82 E-value=83 Score=21.94 Aligned_cols=66 Identities=11% Similarity=0.119 Sum_probs=39.6
Q ss_pred cccCchHHHHHHHHHhccccc-----cHHHHhccCCCCCCcceEEe--ecCCCCH-HHHHHHHHCCCCCeeEEee
Q 032721 31 YGKKPEMNGLMRKAMSGVSVP-----FMTSVLDGYDGFKGVKRLVD--VGGSAGD-CLRMILQKHPFICEGINFD 97 (135)
Q Consensus 31 ~~~~~~~~~~f~~~m~~~~~~-----~~~~~~~~~~~~~~~~~vvD--vGgG~G~-~~~~l~~~~p~l~~~~~~D 97 (135)
+..|+-+.+...++|....-. ...+.+.......+.--||| +|+|+|. +..+|.++.++.+ ++++-
T Consensus 15 vdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~PayAvvDlkL~~gsGL~~i~~lr~~~~d~r-ivvLT 88 (182)
T COG4567 15 VDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAYAVVDLKLGDGSGLAVIEALRERRADMR-IVVLT 88 (182)
T ss_pred ecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCCCceEEEEeeecCCCchHHHHHHHhcCCcce-EEEEe
Confidence 456677888888999875532 12222222221223345666 5888996 5557777888888 65553
No 353
>PRK06753 hypothetical protein; Provisional
Probab=50.77 E-value=21 Score=27.19 Aligned_cols=30 Identities=13% Similarity=0.081 Sum_probs=25.6
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.|+=||||.+.++.++.-+..+++ ++++|.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~-v~v~E~ 31 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHE-VKVFEK 31 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCc-EEEEec
Confidence 477899999988888777777888 999996
No 354
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=50.54 E-value=20 Score=25.12 Aligned_cols=38 Identities=11% Similarity=-0.159 Sum_probs=27.4
Q ss_pred EeecCCCCHHHHHHHHHCCCCCeeEEeechHHHHhCCCC
Q 032721 70 VDVGGSAGDCLRMILQKHPFICEGINFDLPEVVAEAPSI 108 (135)
Q Consensus 70 vDvGgG~G~~~~~l~~~~p~l~~~~~~D~p~~~~~a~~~ 108 (135)
-=+-||||.=....+.++|+++ +.+.--+.....++.+
T Consensus 61 GIliCGTGiG~siaANKv~GIR-AAl~~d~~sA~~ar~h 98 (171)
T TIGR01119 61 GVCICGTGVGINNAVNKVPGVR-SALVRDMTSALYAKEE 98 (171)
T ss_pred EEEEcCCcHHHHHHHhcCCCeE-EEEeCCHHHHHHHHHh
Confidence 3366899998888899999999 6544446666666553
No 355
>PRK07588 hypothetical protein; Provisional
Probab=50.00 E-value=20 Score=27.62 Aligned_cols=30 Identities=3% Similarity=-0.187 Sum_probs=25.3
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.|+=||||.+.++.++.-+...++ ++++|.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~-v~v~E~ 31 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHE-PTLIER 31 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCc-eEEEeC
Confidence 477899999988888877777888 999986
No 356
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=50.00 E-value=65 Score=25.20 Aligned_cols=41 Identities=17% Similarity=-0.076 Sum_probs=34.9
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI 108 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~ 108 (135)
....|+|==||||.++++.... +++ +++.|+ ..+++.|+.|
T Consensus 197 ~G~~vlDPFcGTGgiLiEagl~--G~~-viG~Did~~mv~gak~N 238 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAGLM--GAR-VIGSDIDERMVRGAKIN 238 (347)
T ss_pred cCCEeecCcCCccHHHHhhhhc--Cce-EeecchHHHHHhhhhhh
Confidence 3468999999999999998776 566 999999 8899998876
No 357
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=49.83 E-value=21 Score=30.41 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=29.2
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
+..+|+=||||.+.++.+++-+..+++ ++++|.
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~-V~V~Er 112 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFD-VLVFEK 112 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCe-EEEEec
Confidence 346899999999999999888888999 999997
No 358
>PRK07045 putative monooxygenase; Reviewed
Probab=49.79 E-value=21 Score=27.49 Aligned_cols=31 Identities=6% Similarity=-0.176 Sum_probs=27.5
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
..|+=||||.+.++.++.-+..+++ ++++|.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~-v~v~E~ 36 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHS-VTVVER 36 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCc-EEEEeC
Confidence 4688999999999888888888999 999996
No 359
>PLN02427 UDP-apiose/xylose synthase
Probab=49.68 E-value=50 Score=25.48 Aligned_cols=53 Identities=8% Similarity=-0.051 Sum_probs=33.4
Q ss_pred ceEEeecCCCCHHHHHHHHHCC---CCCeeEEeec-hHHHHhCC------CCCCcEEEecCCCCC
Q 032721 67 KRLVDVGGSAGDCLRMILQKHP---FICEGINFDL-PEVVAEAP------SIPGVTHIGGDMFKS 121 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p---~l~~~~~~D~-p~~~~~a~------~~~rv~~~~gd~~~~ 121 (135)
.+|+ |=||+|.++..|+++.- ..+ ++++|. +.-+.... ...+++++.+|+.+.
T Consensus 15 ~~Vl-VTGgtGfIGs~lv~~L~~~~g~~-V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~ 77 (386)
T PLN02427 15 LTIC-MIGAGGFIGSHLCEKLMTETPHK-VLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHD 77 (386)
T ss_pred cEEE-EECCcchHHHHHHHHHHhcCCCE-EEEEecCchhhhhhhccccccCCCCeEEEEcCCCCh
Confidence 4677 55579988887777543 245 888886 33222211 114799999999654
No 360
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=49.64 E-value=36 Score=28.58 Aligned_cols=61 Identities=16% Similarity=0.197 Sum_probs=38.3
Q ss_pred ceEEeecCCC-CHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCCCCcEEEecCCCCC-------CCCCcEEEe
Q 032721 67 KRLVDVGGSA-GDCLRMILQKHPFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS-------IPAADAIFM 130 (135)
Q Consensus 67 ~~vvDvGgG~-G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~~rv~~~~gd~~~~-------~p~~D~~~l 130 (135)
.+++=+|+|. |......+++ .+.+ ++++|. |+.++.+++ .....+.||..++ +..+|+++.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~-~g~~-vvvID~d~~~v~~~~~-~g~~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLS-SGVK-MTVLDHDPDHIETLRK-FGMKVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred CcEEEEecChHHHHHHHHHHh-CCCC-EEEEECCHHHHHHHHh-cCCeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 5677677654 3333333333 3567 999998 888888765 4567788988654 223566654
No 361
>PRK07538 hypothetical protein; Provisional
Probab=49.45 E-value=22 Score=27.78 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=25.4
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.|+=||||.+.++.++.-+..+++ ++++|.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~-v~v~E~ 31 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIE-VVVFEA 31 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc-EEEEEc
Confidence 477899999998888877777888 999997
No 362
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=49.43 E-value=20 Score=25.08 Aligned_cols=38 Identities=13% Similarity=-0.156 Sum_probs=27.5
Q ss_pred EeecCCCCHHHHHHHHHCCCCCeeEEeechHHHHhCCCC
Q 032721 70 VDVGGSAGDCLRMILQKHPFICEGINFDLPEVVAEAPSI 108 (135)
Q Consensus 70 vDvGgG~G~~~~~l~~~~p~l~~~~~~D~p~~~~~a~~~ 108 (135)
-=+-||||.=....+.++|+++ +.+.--+.....++.+
T Consensus 61 GIliCGTGiG~siaANKv~GIR-AA~~~d~~sA~~aR~h 98 (171)
T PRK08622 61 GVCICGTGVGISNAVNKVPGIR-SALVRDMTSALYAKEE 98 (171)
T ss_pred EEEEcCCcHHHHHHHhcCCCeE-EEEeCCHHHHHHHHHh
Confidence 3366899998888999999999 5544446666666654
No 363
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=49.34 E-value=21 Score=24.41 Aligned_cols=38 Identities=8% Similarity=-0.221 Sum_probs=27.3
Q ss_pred EeecCCCCHHHHHHHHHCCCCCeeEEeechHHHHhCCCC
Q 032721 70 VDVGGSAGDCLRMILQKHPFICEGINFDLPEVVAEAPSI 108 (135)
Q Consensus 70 vDvGgG~G~~~~~l~~~~p~l~~~~~~D~p~~~~~a~~~ 108 (135)
-=+-||||.=....+.++|+++ +...--+.....++.+
T Consensus 65 GIliCGtGiG~siaANK~~GIR-Aa~~~d~~~A~~ar~h 102 (151)
T PTZ00215 65 GILVCGSGIGISIAANKVKGIR-CALCHDHYTARMSRQH 102 (151)
T ss_pred EEEEcCCcHHHHHHHhcCCCeE-EEEECCHHHHHHHHHh
Confidence 3466899998888999999999 6555445555555543
No 364
>PRK05868 hypothetical protein; Validated
Probab=49.04 E-value=23 Score=27.35 Aligned_cols=31 Identities=13% Similarity=-0.047 Sum_probs=25.5
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
..|+=||||.+.++.++.-+..+++ ++++|.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~-v~viE~ 32 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYS-VTMVER 32 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCC-EEEEcC
Confidence 3678899999988888777777888 999986
No 365
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=48.82 E-value=28 Score=28.12 Aligned_cols=34 Identities=9% Similarity=-0.007 Sum_probs=28.8
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeechHH
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDLPEV 101 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~p~~ 101 (135)
..++=||+|.|.++.++.-+.-.++ +++++....
T Consensus 4 ~dvvVIGaG~~GL~aAa~LA~~G~~-V~VlE~~~~ 37 (487)
T COG1233 4 YDVVVIGAGLNGLAAAALLARAGLK-VTVLEKNDR 37 (487)
T ss_pred ccEEEECCChhHHHHHHHHHhCCCE-EEEEEecCC
Confidence 4578899999999999999888999 999996433
No 366
>PRK11524 putative methyltransferase; Provisional
Probab=48.75 E-value=52 Score=24.56 Aligned_cols=39 Identities=8% Similarity=-0.098 Sum_probs=31.6
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCC
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPS 107 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~ 107 (135)
...|+|-=+|+|..+.+..+..- + .+++|+ ++-++.|.+
T Consensus 209 GD~VLDPF~GSGTT~~AA~~lgR--~-~IG~Ei~~~Y~~~a~~ 248 (284)
T PRK11524 209 GDIVLDPFAGSFTTGAVAKASGR--K-FIGIEINSEYIKMGLR 248 (284)
T ss_pred CCEEEECCCCCcHHHHHHHHcCC--C-EEEEeCCHHHHHHHHH
Confidence 47999999999999988887633 3 999998 877777654
No 367
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=48.03 E-value=40 Score=25.29 Aligned_cols=56 Identities=16% Similarity=0.110 Sum_probs=40.8
Q ss_pred CCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC------CCcEEEecCCC
Q 032721 64 KGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMF 119 (135)
Q Consensus 64 ~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~------~rv~~~~gd~~ 119 (135)
.....|+|.+.+.|.=+..+++..++-..++..|. +.-+...+.+ ..+.....|..
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~ 146 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADAR 146 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHH
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccc
Confidence 34468999999999999999998885334899998 6666654432 55666666653
No 368
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=47.96 E-value=42 Score=28.63 Aligned_cols=38 Identities=21% Similarity=0.367 Sum_probs=29.3
Q ss_pred HHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCee
Q 032721 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEG 93 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~ 93 (135)
...++..+. .. ..-.+-.|=|+|.++..+++.||..+ +
T Consensus 312 lRsIL~~~~-i~-~~d~l~~GDGSGGita~lLR~~p~sr-~ 349 (675)
T PF14314_consen 312 LRSILKNLN-IK-YRDALCGGDGSGGITACLLRMNPTSR-G 349 (675)
T ss_pred HHHHHHhcC-CC-cceeEEEecCchHHHHHHHHhCcccc-e
Confidence 466777765 32 24557788899999999999999988 5
No 369
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=47.71 E-value=23 Score=25.61 Aligned_cols=29 Identities=10% Similarity=0.009 Sum_probs=24.2
Q ss_pred EEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 69 LVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 69 vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
|+=||||.+.++.++.-+..+++ ++++|.
T Consensus 3 v~IiGaG~aGl~~A~~l~~~g~~-v~vie~ 31 (295)
T TIGR02032 3 VVVVGAGPAGASAAYRLADKGLR-VLLLEK 31 (295)
T ss_pred EEEECCCHHHHHHHHHHHHCCCe-EEEEec
Confidence 67799999988777777777888 999996
No 370
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=47.66 E-value=62 Score=25.85 Aligned_cols=61 Identities=21% Similarity=0.103 Sum_probs=36.8
Q ss_pred ceEEeecCCCCHHHHHHHHHCC--CCCeeEEeechH-----HHHhCCCCCCcEEEecCCCCC-CCCCcEEE
Q 032721 67 KRLVDVGGSAGDCLRMILQKHP--FICEGINFDLPE-----VVAEAPSIPGVTHIGGDMFKS-IPAADAIF 129 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p--~l~~~~~~D~p~-----~~~~a~~~~rv~~~~gd~~~~-~p~~D~~~ 129 (135)
.+|+=.| |+|.++..|++..- +.+ ++++|... -+......++++++.+|..+. +-..|+++
T Consensus 121 mkILVTG-atGFIGs~Lv~~Ll~~G~~-V~~ldr~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~D~Vi 189 (436)
T PLN02166 121 LRIVVTG-GAGFVGSHLVDKLIGRGDE-VIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPILLEVDQIY 189 (436)
T ss_pred CEEEEEC-CccHHHHHHHHHHHHCCCE-EEEEeCCCCccHhHhhhhccCCceEEEECccccccccCCCEEE
Confidence 4676555 79988887777543 345 88888521 111111235788999998776 32347654
No 371
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=47.56 E-value=23 Score=27.27 Aligned_cols=30 Identities=17% Similarity=0.050 Sum_probs=26.1
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.|+=||||.+.++.+++-+..+++ ++++|.
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~-v~l~E~ 32 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIK-TTIFES 32 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCe-EEEecC
Confidence 478899999999888888878888 999996
No 372
>PHA03108 poly(A) polymerase small subunit; Provisional
Probab=47.51 E-value=16 Score=27.72 Aligned_cols=65 Identities=12% Similarity=0.146 Sum_probs=44.7
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCC----CeeEEeechHHHHhCCCCCCcEEEecCCCCC--C-------CCCcEEEeccc
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFI----CEGINFDLPEVVAEAPSIPGVTHIGGDMFKS--I-------PAADAIFMKVH 133 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l----~~~~~~D~p~~~~~a~~~~rv~~~~gd~~~~--~-------p~~D~~~l~~v 133 (135)
..||=+|.+.|....-|.+.++++ + -+++|..+-.........|+++. +|+++ + -..|+++++.|
T Consensus 62 ~~VVYiGSApG~HI~~L~~lf~~lg~~ik-w~LiDp~~h~~~Le~l~nV~Li~-~f~de~~i~~~r~~~~~~~illISDI 139 (300)
T PHA03108 62 STIVYIGSAPGTHIRYLRDHFYSLGVVIK-WMLIDGRKHDPILNGLRDVTLVT-RFVDEAYLRRLKKQLHPSKIILISDI 139 (300)
T ss_pred ceEEEecCCCCccHHHHHHHHHhcCCCeE-EEEECCCcccHhhcCCCcEEeeH-hhcCHHHHHHHHHhccCCCEEEEEee
Confidence 499999999999999999999984 5 89999733223333335677765 57654 1 12377777654
No 373
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=47.47 E-value=18 Score=26.65 Aligned_cols=30 Identities=10% Similarity=-0.002 Sum_probs=26.0
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.|+=||||...++.++..+.++++ ++++|.
T Consensus 27 DVvIVGgGpAGl~AA~~la~~G~~-V~liEk 56 (257)
T PRK04176 27 DVAIVGAGPSGLTAAYYLAKAGLK-VAVFER 56 (257)
T ss_pred CEEEECccHHHHHHHHHHHhCCCe-EEEEec
Confidence 477799999998888888888999 999996
No 374
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=46.85 E-value=23 Score=27.32 Aligned_cols=30 Identities=10% Similarity=-0.080 Sum_probs=25.8
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.|+=||||.+.++.+++-+...++ ++++|.
T Consensus 5 dv~IvGgG~aGl~~A~~L~~~G~~-v~l~E~ 34 (384)
T PRK08849 5 DIAVVGGGMVGAATALGFAKQGRS-VAVIEG 34 (384)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCc-EEEEcC
Confidence 588899999988888877777888 999996
No 375
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=46.82 E-value=72 Score=23.25 Aligned_cols=61 Identities=16% Similarity=0.203 Sum_probs=36.8
Q ss_pred ceEEeecCCCCHHHHH--HHHHCCCCCeeEEe--ec-hHHHHhCCCCCCcEEEecCCCCC-CCCCcEEEec
Q 032721 67 KRLVDVGGSAGDCLRM--ILQKHPFICEGINF--DL-PEVVAEAPSIPGVTHIGGDMFKS-IPAADAIFMK 131 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~--l~~~~p~l~~~~~~--D~-p~~~~~a~~~~rv~~~~gd~~~~-~p~~D~~~l~ 131 (135)
.+||=||||.=..-.. |++. +.+ ++++ ++ |++.+.+ +..+++++..+|-.. +..+++++..
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~--gA~-VtVVap~i~~el~~l~-~~~~i~~~~r~~~~~dl~g~~LViaA 92 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKK--GCY-VYILSKKFSKEFLDLK-KYGNLKLIKGNYDKEFIKDKHLIVIA 92 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCE-EEEEcCCCCHHHHHHH-hCCCEEEEeCCCChHHhCCCcEEEEC
Confidence 5888999998776543 3343 344 5555 55 5544433 346788888776433 4445766653
No 376
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=46.79 E-value=25 Score=27.31 Aligned_cols=31 Identities=13% Similarity=0.096 Sum_probs=26.8
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
..|+=||+|.+.++.++.-+..+++ ++++|.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~-v~viE~ 33 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGID-NVILER 33 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCC-EEEEEC
Confidence 3588899999998888888778899 999997
No 377
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=46.79 E-value=7 Score=31.44 Aligned_cols=42 Identities=24% Similarity=0.135 Sum_probs=34.7
Q ss_pred CCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCC
Q 032721 63 FKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPS 107 (135)
Q Consensus 63 ~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~ 107 (135)
|.....|+|+=||.|-++.-++++. .+ ++..|+ |++++-.+.
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~--cr-V~aNDLNpesik~Lk~ 289 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKG--CR-VYANDLNPESIKWLKA 289 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcC--cE-EEecCCCHHHHHHHHH
Confidence 4455789999999999999888875 67 999999 988876543
No 378
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=46.47 E-value=59 Score=24.74 Aligned_cols=56 Identities=21% Similarity=0.143 Sum_probs=34.3
Q ss_pred CCCcceEEeecCCCCHHHHHHHHHCC--CCCeeEEeec-hH----HHHhCC------CCCCcEEEecCCCCC
Q 032721 63 FKGVKRLVDVGGSAGDCLRMILQKHP--FICEGINFDL-PE----VVAEAP------SIPGVTHIGGDMFKS 121 (135)
Q Consensus 63 ~~~~~~vvDvGgG~G~~~~~l~~~~p--~l~~~~~~D~-p~----~~~~a~------~~~rv~~~~gd~~~~ 121 (135)
|.. .+|+=.| |+|.++..|+++.- +.+ ++++|. +. .++... ...+++++.+|+.+.
T Consensus 13 ~~~-~~vlVtG-atGfiG~~lv~~L~~~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~ 81 (348)
T PRK15181 13 LAP-KRWLITG-VAGFIGSGLLEELLFLNQT-VIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKF 81 (348)
T ss_pred ccC-CEEEEEC-CccHHHHHHHHHHHHCCCE-EEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCH
Confidence 554 5677555 69988777766552 346 888986 21 121111 124788999999753
No 379
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=45.71 E-value=40 Score=25.11 Aligned_cols=47 Identities=15% Similarity=-0.014 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHH----HCCCCCeeEEeechHHHHh---CCCCCCcEEEecCCCCC
Q 032721 74 GSAGDCLRMILQ----KHPFICEGINFDLPEVVAE---APSIPGVTHIGGDMFKS 121 (135)
Q Consensus 74 gG~G~~~~~l~~----~~p~l~~~~~~D~p~~~~~---a~~~~rv~~~~gd~~~~ 121 (135)
||+|.++..|++ +.+..+ +.++|+..-... ....+..+++.+|+.+.
T Consensus 4 GgsGflG~~iv~~Ll~~g~~~~-Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~ 57 (280)
T PF01073_consen 4 GGSGFLGSHIVRQLLERGYIYE-VRVLDRSPPPKFLKDLQKSGVKEYIQGDITDP 57 (280)
T ss_pred cCCcHHHHHHHHHHHHCCCceE-EEEcccccccccchhhhcccceeEEEeccccH
Confidence 688876665554 333344 888887322222 22224455889999764
No 380
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=44.93 E-value=27 Score=27.81 Aligned_cols=29 Identities=17% Similarity=0.016 Sum_probs=24.3
Q ss_pred EEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 69 LVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 69 vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
|+=||+|+|.+..++..+..+.+ ++++|.
T Consensus 3 vvVIGaGpaG~~aA~~aa~~g~~-v~lie~ 31 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAELGAS-VAMVER 31 (463)
T ss_pred EEEECCCHHHHHHHHHHHHCCCe-EEEEeC
Confidence 67799999988888887777888 999884
No 381
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=44.85 E-value=21 Score=22.74 Aligned_cols=50 Identities=24% Similarity=0.284 Sum_probs=30.1
Q ss_pred HhccCCCCCCcceEEeecCCCCHH-HHHHHHHCCCCCeeEEeechHHHHhC
Q 032721 56 VLDGYDGFKGVKRLVDVGGSAGDC-LRMILQKHPFICEGINFDLPEVVAEA 105 (135)
Q Consensus 56 ~~~~~~~~~~~~~vvDvGgG~G~~-~~~l~~~~p~l~~~~~~D~p~~~~~a 105 (135)
.++.++.-.+.-.++|++||+-.- +......+|+++.++++++|-+++.+
T Consensus 50 ~i~~~~~~~~vlil~Dl~ggsp~n~a~~~~~~~~~~~vi~G~Nlpmlle~~ 100 (116)
T PF03610_consen 50 AIEELDEGDGVLILTDLGGGSPFNEAARLLLDKPNIRVISGVNLPMLLEAL 100 (116)
T ss_dssp HHHHCCTTSEEEEEESSTTSHHHHHHHHHHCTSTTEEEEES--HHHHHHHH
T ss_pred HHHhccCCCcEEEEeeCCCCccchHHHHHhccCCCEEEEecccHHHHHHHH
Confidence 334443233456789999998764 44555566665437888888777654
No 382
>PRK08507 prephenate dehydrogenase; Validated
Probab=44.84 E-value=32 Score=25.36 Aligned_cols=60 Identities=17% Similarity=0.135 Sum_probs=30.4
Q ss_pred EEeecCCC--CHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCCCCcEEEecCCCCCCCCCcEEEec
Q 032721 69 LVDVGGSA--GDCLRMILQKHPFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMK 131 (135)
Q Consensus 69 vvDvGgG~--G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~~rv~~~~gd~~~~~p~~D~~~l~ 131 (135)
|.=||.|. |.++..+.+.....+ ++++|. +..++.+.+..-+... .+. .+...+|++++.
T Consensus 3 I~iIG~G~mG~sla~~l~~~g~~~~-v~~~d~~~~~~~~~~~~g~~~~~-~~~-~~~~~aD~Vila 65 (275)
T PRK08507 3 IGIIGLGLMGGSLGLALKEKGLISK-VYGYDHNELHLKKALELGLVDEI-VSF-EELKKCDVIFLA 65 (275)
T ss_pred EEEEccCHHHHHHHHHHHhcCCCCE-EEEEcCCHHHHHHHHHCCCCccc-CCH-HHHhcCCEEEEe
Confidence 45566554 345555555433346 888998 6666555432211111 121 223336888764
No 383
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=44.68 E-value=27 Score=26.61 Aligned_cols=29 Identities=14% Similarity=-0.003 Sum_probs=24.5
Q ss_pred EEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 69 LVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 69 vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
|+=||+|.+.++.++.-+...++ ++++|.
T Consensus 2 ViIvGaG~aGl~~A~~L~~~G~~-v~v~Er 30 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARSGLK-IALIEA 30 (385)
T ss_pred EEEECCCHHHHHHHHHHhcCCCE-EEEEeC
Confidence 56699999988888777777888 999997
No 384
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=44.60 E-value=32 Score=26.36 Aligned_cols=31 Identities=13% Similarity=-0.044 Sum_probs=26.9
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
..|+=||||.+.++.++.....+++ ++++|.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~-v~v~E~ 36 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLR-VALLAP 36 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCe-EEEEec
Confidence 3688899999998888888888888 999997
No 385
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=44.37 E-value=28 Score=27.49 Aligned_cols=32 Identities=6% Similarity=-0.186 Sum_probs=22.8
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
..+||=||||.|.+..+..-..++.+ +|++|.
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~-ItlI~~ 41 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYN-ITVISP 41 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCe-EEEEcC
Confidence 36899999999886654333334567 999984
No 386
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=44.28 E-value=29 Score=28.38 Aligned_cols=39 Identities=10% Similarity=0.081 Sum_probs=29.3
Q ss_pred HHHHhccCCCCCCcceEEeecCCCCHHHHH----HHHHCCCCC
Q 032721 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRM----ILQKHPFIC 91 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~----l~~~~p~l~ 91 (135)
+...++..|.+.++..+.|++||+|.++.. |..+||+..
T Consensus 141 IR~~vEeCD~LQGFqi~~sl~gG~sG~gs~lLE~L~DEy~k~~ 183 (493)
T cd06060 141 LRFYVEECDYLQGFQVLCDLHDGFSGVGAKCLEHLQDEYGKAS 183 (493)
T ss_pred HHHHHHhCcccccEEEEEecCCcccchHHHHHHHHHHhcCccc
Confidence 455677777678889999999999877665 445688754
No 387
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=44.27 E-value=31 Score=26.56 Aligned_cols=31 Identities=10% Similarity=-0.026 Sum_probs=25.6
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
..|+=||||.+.++.++.-...+++ ++++|.
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~-V~liE~ 36 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFS-VAVLEH 36 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCE-EEEEcC
Confidence 3577799999988888777777888 999996
No 388
>PRK06370 mercuric reductase; Validated
Probab=44.19 E-value=28 Score=27.71 Aligned_cols=30 Identities=3% Similarity=-0.186 Sum_probs=24.8
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.|+=||+|+|.+..++..+.-+.+ ++++|.
T Consensus 7 DvvVIG~GpaG~~aA~~aa~~G~~-v~lie~ 36 (463)
T PRK06370 7 DAIVIGAGQAGPPLAARAAGLGMK-VALIER 36 (463)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCe-EEEEec
Confidence 478899999988888877766778 999984
No 389
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=44.11 E-value=57 Score=20.91 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=29.6
Q ss_pred CcceEEeecCCCCH-HHHHHHHHCCCCCeeEEeechHHHHhCC
Q 032721 65 GVKRLVDVGGSAGD-CLRMILQKHPFICEGINFDLPEVVAEAP 106 (135)
Q Consensus 65 ~~~~vvDvGgG~G~-~~~~l~~~~p~l~~~~~~D~p~~~~~a~ 106 (135)
+.-.+.|+=|||-. .+..+..++|+++-++++.+|-+++.+.
T Consensus 60 ~vivltDl~GGSp~n~a~~~~~~~~~~~vIsG~NLpmlle~~~ 102 (116)
T TIGR00824 60 EVLFLVDIFGGSPYNAAARIIVDKPHMDVIAGVNLPLLLETLM 102 (116)
T ss_pred CEEEEEeCCCCCHHHHHHHHHhhcCCEEEEEecCHHHHHHHHH
Confidence 34567999777765 4545666788876468889998887653
No 390
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=43.92 E-value=28 Score=26.60 Aligned_cols=29 Identities=14% Similarity=-0.046 Sum_probs=24.8
Q ss_pred EEeecCCCCHHHHHHHHHCCC-CCeeEEeec
Q 032721 69 LVDVGGSAGDCLRMILQKHPF-ICEGINFDL 98 (135)
Q Consensus 69 vvDvGgG~G~~~~~l~~~~p~-l~~~~~~D~ 98 (135)
|+=||+|.+.++.++.-...+ ++ ++++|.
T Consensus 2 v~IvGaG~aGl~~A~~L~~~G~~~-v~v~E~ 31 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRLGKIK-IALIEA 31 (382)
T ss_pred EEEECccHHHHHHHHHHhcCCCce-EEEEeC
Confidence 677999999888888777777 89 999997
No 391
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=43.67 E-value=31 Score=26.87 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=24.0
Q ss_pred eEEeecCCCCHHHHHHHHHC-CCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKH-PFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~-p~l~~~~~~D~ 98 (135)
+|+=||||.+.++.+++-+. ++++ ++++|.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~-v~v~Er 32 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLN-VQLFEA 32 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCC-EEEEec
Confidence 57789999998888777654 4578 999997
No 392
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=43.61 E-value=49 Score=24.18 Aligned_cols=48 Identities=21% Similarity=0.136 Sum_probs=27.4
Q ss_pred cCCCCHHHHHHHHHC----CCCCeeEEeechH------HHHhCCCCCCcEEEecCCCCC
Q 032721 73 GGSAGDCLRMILQKH----PFICEGINFDLPE------VVAEAPSIPGVTHIGGDMFKS 121 (135)
Q Consensus 73 GgG~G~~~~~l~~~~----p~l~~~~~~D~p~------~~~~a~~~~rv~~~~gd~~~~ 121 (135)
=||+|.++..++++. ++.+ ++++|... .++.....++++++.+|+.++
T Consensus 5 tGatG~iG~~l~~~l~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 62 (317)
T TIGR01181 5 TGGAGFIGSNFVRYILNEHPDAE-VIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDR 62 (317)
T ss_pred EcCCchHHHHHHHHHHHhCCCCE-EEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCH
Confidence 356776666665533 4466 88887521 111111224788889998754
No 393
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=43.55 E-value=9 Score=29.09 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=37.1
Q ss_pred cceEEeecCCCCHHHHHHHHHCCC-CCeeEEeechHHHHhCCC----C-----CCcEEEecCCCCC
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPF-ICEGINFDLPEVVAEAPS----I-----PGVTHIGGDMFKS 121 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~-l~~~~~~D~p~~~~~a~~----~-----~rv~~~~gd~~~~ 121 (135)
...||-+|||-= +.+-.-.+|. ++ +.-+|+|++++.=++ . .++.+++.|++++
T Consensus 93 ~~qvViLgaGLD--TRayRl~~~~~~~-vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~ 155 (297)
T COG3315 93 IRQVVILGAGLD--TRAYRLDWPKGTR-VFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLRED 155 (297)
T ss_pred ccEEEEeccccc--cceeecCCCCCCe-EEECCCcHHHHHHHHHhhhcCCCCCceEEEEecccccc
Confidence 678999998654 3334444554 55 777788999986432 1 3899999999943
No 394
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=43.53 E-value=25 Score=27.36 Aligned_cols=30 Identities=10% Similarity=-0.072 Sum_probs=25.9
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.|+=||||.+.++.+++-...+++ ++++|.
T Consensus 6 dV~IvGaG~~Gl~~A~~L~~~G~~-v~viE~ 35 (405)
T PRK08850 6 DVAIIGGGMVGLALAAALKESDLR-IAVIEG 35 (405)
T ss_pred CEEEECccHHHHHHHHHHHhCCCE-EEEEcC
Confidence 588899999988888777777888 999996
No 395
>PTZ00010 tubulin beta chain; Provisional
Probab=43.49 E-value=46 Score=26.78 Aligned_cols=37 Identities=16% Similarity=0.254 Sum_probs=26.0
Q ss_pred HHhccCCCCCCcceEEeecCCCC-----HHHHHHHHHCCCCC
Q 032721 55 SVLDGYDGFKGVKRLVDVGGSAG-----DCLRMILQKHPFIC 91 (135)
Q Consensus 55 ~~~~~~~~~~~~~~vvDvGgG~G-----~~~~~l~~~~p~l~ 91 (135)
..++..|.+.++..+-.+||||| .++..|...||...
T Consensus 122 k~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~dey~~~~ 163 (445)
T PTZ00010 122 KEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYPDRI 163 (445)
T ss_pred hhhhhccCccceEEEeccCCCccccHHHHHHHHHHhhCCccc
Confidence 34445555667788999999998 35567788898643
No 396
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=43.34 E-value=27 Score=28.51 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=24.4
Q ss_pred ceEEeecCC-CCHH-HHHHHHHCCCCCeeEEeechH
Q 032721 67 KRLVDVGGS-AGDC-LRMILQKHPFICEGINFDLPE 100 (135)
Q Consensus 67 ~~vvDvGgG-~G~~-~~~l~~~~p~l~~~~~~D~p~ 100 (135)
..|+=|||| .|.. +..|++..|..+ ++++|...
T Consensus 46 ~DVvIIGGGI~G~a~A~~La~~~~~~~-V~VlEk~~ 80 (497)
T PTZ00383 46 YDVVIVGGGVTGTALFYTLSKFTNLKK-IALIERRS 80 (497)
T ss_pred ccEEEECccHHHHHHHHHHHhhCCCCE-EEEEecCc
Confidence 468889998 6754 445666678888 99999853
No 397
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=43.24 E-value=27 Score=27.11 Aligned_cols=30 Identities=13% Similarity=-0.013 Sum_probs=26.0
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.|+=||||.+.++.++.-...+.+ ++++|.
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~~-v~viE~ 33 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSGLE-VLLLDG 33 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCCCE-EEEEcC
Confidence 478899999998888888777888 999997
No 398
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=42.89 E-value=38 Score=26.64 Aligned_cols=30 Identities=10% Similarity=0.135 Sum_probs=23.2
Q ss_pred eEEeecCCCCHHHH--HHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLR--MILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~--~l~~~~p~l~~~~~~D~ 98 (135)
+||=||||.+.+.. .+++..++.+ ++++|.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~-Vtli~~ 33 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELE-ITVYEK 33 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCc-EEEEEC
Confidence 68889999986554 4566667778 999996
No 399
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.82 E-value=2.6 Score=29.56 Aligned_cols=68 Identities=21% Similarity=0.172 Sum_probs=41.5
Q ss_pred ceEEeecCCC-CHHHHHHHHHCCCCCeeEEeec-hHHHHhCCC---------CCCcEEEecCCCCCCC---C--CcEEEe
Q 032721 67 KRLVDVGGSA-GDCLRMILQKHPFICEGINFDL-PEVVAEAPS---------IPGVTHIGGDMFKSIP---A--ADAIFM 130 (135)
Q Consensus 67 ~~vvDvGgG~-G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~---------~~rv~~~~gd~~~~~p---~--~D~~~l 130 (135)
..|+++|||- |..+..++...|.-. +-+-|= .+.++..++ ..++..+..+....+. . .|+++.
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~-v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSS-VWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCce-EEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 6899999985 556667777777777 888886 555554432 1445454444433321 1 377766
Q ss_pred cccCC
Q 032721 131 KVHHF 135 (135)
Q Consensus 131 ~~vl~ 135 (135)
...+|
T Consensus 110 ADClF 114 (201)
T KOG3201|consen 110 ADCLF 114 (201)
T ss_pred ccchh
Confidence 65554
No 400
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=42.62 E-value=30 Score=27.28 Aligned_cols=30 Identities=7% Similarity=-0.219 Sum_probs=23.8
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.|+=||+|.|.+..++..+..+.+ ++++|.
T Consensus 5 dvvVIG~GpaG~~aA~~l~~~g~~-V~liE~ 34 (438)
T PRK07251 5 DLIVIGFGKAGKTLAAKLASAGKK-VALVEE 34 (438)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCE-EEEEec
Confidence 477899999888877766667777 888885
No 401
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=42.37 E-value=33 Score=25.82 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=36.1
Q ss_pred eEEeecCCC--CHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCCCCcEEEecCC-CCCCCCCcEEEec
Q 032721 68 RLVDVGGSA--GDCLRMILQKHPFICEGINFDL-PEVVAEAPSIPGVTHIGGDM-FKSIPAADAIFMK 131 (135)
Q Consensus 68 ~vvDvGgG~--G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~~rv~~~~gd~-~~~~p~~D~~~l~ 131 (135)
+|+=+|.|- |.++..+.++.+... +++.|. ...++.+....-+.-..-|. ......+|+++++
T Consensus 5 ~v~IvG~GliG~s~a~~l~~~g~~v~-i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~Viva 71 (279)
T COG0287 5 KVGIVGLGLMGGSLARALKEAGLVVR-IIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVA 71 (279)
T ss_pred EEEEECCchHHHHHHHHHHHcCCeEE-EEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEe
Confidence 444455432 567777777777777 888888 66666665432222222233 2335557887764
No 402
>COG4883 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.34 E-value=35 Score=26.54 Aligned_cols=82 Identities=20% Similarity=0.320 Sum_probs=51.9
Q ss_pred hhhHHHHhhCCCCChhhhhhC-CCccccc-ccCchHHHHHHHHHhcc---ccccHHHHhccCCCCCCcceEEeecCC---
Q 032721 4 WPLVHEAVLDPTIEPFVKVHG-EPAYSYY-GKKPEMNGLMRKAMSGV---SVPFMTSVLDGYDGFKGVKRLVDVGGS--- 75 (135)
Q Consensus 4 w~~L~~~vr~g~~~~~~~~~g-~~~~e~~-~~~~~~~~~f~~~m~~~---~~~~~~~~~~~~~~~~~~~~vvDvGgG--- 75 (135)
...|+++||-.. .||-.-+. .++.|.+ +++|++.++..+..... .+....+.++.|.+|-+...|||..-=
T Consensus 72 l~sltdtvrped-dpfvehyqtp~ileilyeed~~f~ksv~kfie~ieksealigke~irryggfygptcvvdfal~pgs 150 (500)
T COG4883 72 LTSLTDTVRPED-DPFVEHYQTPPILEILYEEDPAFHKSVMKFIEEIEKSEALIGKESIRRYGGFYGPTCVVDFALVPGS 150 (500)
T ss_pred HHhhhcccCCCC-CchhhhccCchHHHHHHhcCHHHHHHHHHHHHHHhHHHhhhhHHHHHHhcCccCCceEEEEEecCCc
Confidence 456778888655 66765554 4455544 45777766555555443 344566777788778888999997644
Q ss_pred CCHHHHHHHHH
Q 032721 76 AGDCLRMILQK 86 (135)
Q Consensus 76 ~G~~~~~l~~~ 86 (135)
+......++++
T Consensus 151 tsnvvnrilk~ 161 (500)
T COG4883 151 TSNVVNRILKK 161 (500)
T ss_pred hHHHHHHHHHh
Confidence 44555556554
No 403
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=42.27 E-value=26 Score=28.11 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=20.7
Q ss_pred eEEeecCCCCH--HHHHHHHHCCC-CCeeEEeech
Q 032721 68 RLVDVGGSAGD--CLRMILQKHPF-ICEGINFDLP 99 (135)
Q Consensus 68 ~vvDvGgG~G~--~~~~l~~~~p~-l~~~~~~D~p 99 (135)
.|+=||||+.. .+..|++..|. ++ +++++.+
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~-v~lie~~ 34 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALS-VTLIESP 34 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSE-EEEEE-S
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcE-EEEEecC
Confidence 37779999864 45567777777 78 9999864
No 404
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=42.11 E-value=23 Score=23.98 Aligned_cols=44 Identities=11% Similarity=0.001 Sum_probs=28.5
Q ss_pred ecCCCCHHHHHHHHHCCCCCeeEEeechHHHHhCCCC--CCcEEEec
Q 032721 72 VGGSAGDCLRMILQKHPFICEGINFDLPEVVAEAPSI--PGVTHIGG 116 (135)
Q Consensus 72 vGgG~G~~~~~l~~~~p~l~~~~~~D~p~~~~~a~~~--~rv~~~~g 116 (135)
+=||||.=..-.+.++|+++ +.+.--+...+.++.+ .+|-.+.+
T Consensus 61 liCGtGiG~siaANK~~GIR-AA~~~d~~~A~~ar~hNnaNVL~lG~ 106 (141)
T TIGR01118 61 VIDAYGAGSFMVATKIKGMI-AAEVSDERSAYMTRGHNNARMITVGA 106 (141)
T ss_pred EEcCCCHhHhhhhhcCCCeE-EEEECCHHHHHHHHHHcCCcEEEECc
Confidence 34788888888899999999 6544445555666543 34444433
No 405
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=41.94 E-value=36 Score=27.01 Aligned_cols=29 Identities=14% Similarity=-0.008 Sum_probs=24.8
Q ss_pred EEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 69 LVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 69 vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
|+=||||+|.+..++..+.-..+ ++++|.
T Consensus 5 vvVIG~GpaG~~aA~~aa~~G~~-V~lie~ 33 (446)
T TIGR01424 5 LFVIGAGSGGVRAARLAANHGAK-VAIAEE 33 (446)
T ss_pred EEEECCCHHHHHHHHHHHhCCCc-EEEEec
Confidence 67799999998888888877888 999985
No 406
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=41.72 E-value=40 Score=30.82 Aligned_cols=70 Identities=17% Similarity=0.044 Sum_probs=39.4
Q ss_pred HhccCCCCCCcceEEeecCCCCHHHHHHHHHCC-CCCeeEEeec-hHHHHhCCCCCCcEEEecCCCCC-C---CCCcEEE
Q 032721 56 VLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHP-FICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS-I---PAADAIF 129 (135)
Q Consensus 56 ~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p-~l~~~~~~D~-p~~~~~a~~~~rv~~~~gd~~~~-~---p~~D~~~ 129 (135)
+....+ +.+...++|+|.|.=+ .+++..| ++. ++.+|. |.+.....=...-+|+..|+..+ + ..+|.+.
T Consensus 814 ~~~~~~-~~~~~~~lDLGTGPE~---RiLsliP~~~p-vtmvD~RP~ae~m~~w~t~T~y~~~DYl~~~~~~~~~~D~vt 888 (1289)
T PF06016_consen 814 ILSQTV-RTDPDHWLDLGTGPEC---RILSLIPPDTP-VTMVDTRPFAEPMNCWNTQTQYIQADYLSDAWWNGTPFDAVT 888 (1289)
T ss_dssp HHCCCT-TCCC-CEEEET--TT----CHHHCS-TTSE-EEEEESS--SSSCCCCSTTEEEEES-TTSCCGGCC---SEEE
T ss_pred hhhccc-ccCcceEEEccCCccc---eeeeccCCCCc-eEEEecCCcccccchhhhcceeeeeccccceeEecCCCCEEE
Confidence 444444 6556899999988764 3444455 466 999998 55444443336789999999887 2 2357665
Q ss_pred e
Q 032721 130 M 130 (135)
Q Consensus 130 l 130 (135)
.
T Consensus 889 a 889 (1289)
T PF06016_consen 889 A 889 (1289)
T ss_dssp E
T ss_pred E
Confidence 3
No 407
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=41.53 E-value=33 Score=28.22 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=33.2
Q ss_pred cceEEeecCCC-CHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC
Q 032721 66 VKRLVDVGGSA-GDCLRMILQKHPFICEGINFDL-PEVVAEAPSI 108 (135)
Q Consensus 66 ~~~vvDvGgG~-G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~ 108 (135)
..+|+=+|+|. |..+...++.... + ++++|. ++.++.++..
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA-~-V~a~D~~~~rle~aesl 207 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGA-I-VRAFDTRPEVAEQVESM 207 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-E-EEEEeCCHHHHHHHHHc
Confidence 57899999886 7777788887765 7 999999 8888887764
No 408
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=41.46 E-value=38 Score=26.24 Aligned_cols=31 Identities=13% Similarity=-0.072 Sum_probs=26.5
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
..|+=||||.+.++.++.-+.-+.+ ++++|.
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~~-v~v~E~ 49 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGLR-IALIEA 49 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCCE-EEEEec
Confidence 4688899999988888887777888 999997
No 409
>PRK08013 oxidoreductase; Provisional
Probab=41.16 E-value=31 Score=26.80 Aligned_cols=30 Identities=10% Similarity=-0.096 Sum_probs=26.2
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.|+=||||...++.+++-+..+++ ++++|.
T Consensus 5 dV~IvGaGpaGl~~A~~La~~G~~-v~viE~ 34 (400)
T PRK08013 5 DVVIAGGGMVGLAVACGLQGSGLR-VAVLEQ 34 (400)
T ss_pred CEEEECcCHHHHHHHHHHhhCCCE-EEEEeC
Confidence 578899999988888888778899 999997
No 410
>PRK06116 glutathione reductase; Validated
Probab=41.09 E-value=32 Score=27.28 Aligned_cols=31 Identities=13% Similarity=0.015 Sum_probs=24.8
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeech
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDLP 99 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~p 99 (135)
-|+=||||+|.+..++....-..+ ++++|..
T Consensus 6 DvvVIG~GpaG~~aA~~~a~~G~~-V~liE~~ 36 (450)
T PRK06116 6 DLIVIGGGSGGIASANRAAMYGAK-VALIEAK 36 (450)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCe-EEEEecc
Confidence 377899999888877777766778 9999953
No 411
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=40.88 E-value=24 Score=27.99 Aligned_cols=29 Identities=17% Similarity=0.118 Sum_probs=22.2
Q ss_pred EEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 69 LVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 69 vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
||=||||++.++.++..+.-.++ +++++.
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~-VlLiE~ 30 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAK-VLLIEK 30 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS--EEEE-S
T ss_pred EEEECccHHHHHHHHHHHHCCCE-EEEEEC
Confidence 67799999999999998888999 999986
No 412
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=40.58 E-value=59 Score=27.37 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=35.0
Q ss_pred cceEEeecCCCCHHHHHHHHHCC---CCCeeEEeec-hHHHHhCCCCCCcEEEecCCCC
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHP---FICEGINFDL-PEVVAEAPSIPGVTHIGGDMFK 120 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p---~l~~~~~~D~-p~~~~~a~~~~rv~~~~gd~~~ 120 (135)
..+|+ |=||+|.++..|+++.- +.+ ++++|. +.........++++++.+|..+
T Consensus 315 ~~~VL-VTGatGFIGs~Lv~~Ll~~~g~~-V~~l~r~~~~~~~~~~~~~~~~~~gDl~d 371 (660)
T PRK08125 315 RTRVL-ILGVNGFIGNHLTERLLRDDNYE-VYGLDIGSDAISRFLGHPRFHFVEGDISI 371 (660)
T ss_pred CCEEE-EECCCchHHHHHHHHHHhCCCcE-EEEEeCCchhhhhhcCCCceEEEeccccC
Confidence 45666 44579998888877543 356 999998 3322222223578999999965
No 413
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=40.44 E-value=38 Score=26.24 Aligned_cols=31 Identities=13% Similarity=0.076 Sum_probs=26.4
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
..|+=||+|.+.++.++.-+..+.+ ++++|.
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~-v~v~E~ 33 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGID-SVVLER 33 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCC-EEEEEc
Confidence 3588899999988888877777889 999997
No 414
>PRK06153 hypothetical protein; Provisional
Probab=40.42 E-value=42 Score=26.72 Aligned_cols=31 Identities=23% Similarity=0.249 Sum_probs=23.5
Q ss_pred ceEEeecC-CCCHHHHHHHHHCCCCCeeEEeec
Q 032721 67 KRLVDVGG-SAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 67 ~~vvDvGg-G~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.+|+=||| |+|......+.+.+--+ ++++|.
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVge-I~LVD~ 208 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVRE-IHLFDG 208 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCE-EEEECC
Confidence 57777887 68887777777777666 888884
No 415
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=40.18 E-value=49 Score=25.38 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=16.7
Q ss_pred eEEeecCCCCH--HHHHHHHHCCC
Q 032721 68 RLVDVGGSAGD--CLRMILQKHPF 89 (135)
Q Consensus 68 ~vvDvGgG~G~--~~~~l~~~~p~ 89 (135)
+|+-+|||+|. ++..|.+..|.
T Consensus 2 ~iv~lgGGtG~~~lL~GL~~~~~~ 25 (303)
T PRK13606 2 MITVLSGGTGTAKLLRGLKAVLPP 25 (303)
T ss_pred eEEEEeCccCHHHHHHHHHhccCC
Confidence 57889999994 78888877543
No 416
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=40.13 E-value=33 Score=27.31 Aligned_cols=30 Identities=10% Similarity=0.081 Sum_probs=24.6
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
-|+=||||+|.+..++..+.-..+ ++++|.
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G~~-V~liE~ 33 (450)
T TIGR01421 4 DYLVIGGGSGGIASARRAAEHGAK-ALLVEA 33 (450)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCc-EEEecc
Confidence 377799999988888777777788 999985
No 417
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=40.13 E-value=16 Score=26.70 Aligned_cols=12 Identities=33% Similarity=0.670 Sum_probs=9.8
Q ss_pred ceEEeecCCCCH
Q 032721 67 KRLVDVGGSAGD 78 (135)
Q Consensus 67 ~~vvDvGgG~G~ 78 (135)
.-||||||||=.
T Consensus 142 g~VVDiGGGTTG 153 (277)
T COG4820 142 GGVVDIGGGTTG 153 (277)
T ss_pred CcEEEeCCCcce
Confidence 689999998743
No 418
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=39.89 E-value=26 Score=23.69 Aligned_cols=43 Identities=9% Similarity=-0.011 Sum_probs=27.5
Q ss_pred cCCCCHHHHHHHHHCCCCCeeEEeechHHHHhCCCC--CCcEEEec
Q 032721 73 GGSAGDCLRMILQKHPFICEGINFDLPEVVAEAPSI--PGVTHIGG 116 (135)
Q Consensus 73 GgG~G~~~~~l~~~~p~l~~~~~~D~p~~~~~a~~~--~rv~~~~g 116 (135)
=||||.=..-.+.++|+++ +.+.--+.....++.+ .+|-.+.+
T Consensus 61 iCGtGiG~siaANKv~GIR-aA~~~d~~~A~~ar~hNnaNVl~lG~ 105 (141)
T PRK12613 61 VDAYGAGPFMVATKLKGMV-AAEVSDERSAYMTRGHNNARMITMGA 105 (141)
T ss_pred EcCCCHhHhhhhhcCCCeE-EEEECCHHHHHHHHHHcCCcEEEECc
Confidence 3788887888889999999 5444335555555543 34444433
No 419
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=39.78 E-value=39 Score=27.51 Aligned_cols=30 Identities=13% Similarity=0.099 Sum_probs=26.1
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEee
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFD 97 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D 97 (135)
..|+=||||.+.++.++..+..+++ ++++|
T Consensus 213 ~dVvIIGgGpAGl~AA~~la~~G~~-v~li~ 242 (515)
T TIGR03140 213 YDVLVVGGGPAGAAAAIYAARKGLR-TAMVA 242 (515)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCc-EEEEe
Confidence 5788899999999988888888888 88886
No 420
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=39.77 E-value=36 Score=27.16 Aligned_cols=30 Identities=13% Similarity=0.111 Sum_probs=24.4
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.|+=||||+|.+..++....-+.+ ++++|.
T Consensus 6 DvvIIG~GpaG~~AA~~aa~~G~~-V~lie~ 35 (466)
T PRK07818 6 DVVVLGAGPGGYVAAIRAAQLGLK-TAVVEK 35 (466)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCe-EEEEec
Confidence 478899999988887777766788 998884
No 421
>PRK06185 hypothetical protein; Provisional
Probab=39.58 E-value=37 Score=26.26 Aligned_cols=31 Identities=13% Similarity=0.061 Sum_probs=25.8
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
..|+=||||...++.++.-+..+++ ++++|.
T Consensus 7 ~dV~IvGgG~~Gl~~A~~La~~G~~-v~liE~ 37 (407)
T PRK06185 7 TDCCIVGGGPAGMMLGLLLARAGVD-VTVLEK 37 (407)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCc-EEEEec
Confidence 3578899999988887777777889 999997
No 422
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=39.55 E-value=35 Score=28.08 Aligned_cols=30 Identities=13% Similarity=0.150 Sum_probs=24.3
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.|+=||||.+.+..++..+....+ ++++|.
T Consensus 6 DVvIIGgGpAGL~AA~~lar~g~~-V~liE~ 35 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGRAKLD-TLIIEK 35 (555)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCC-EEEEec
Confidence 478899999988887766666778 999885
No 423
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=39.34 E-value=27 Score=26.00 Aligned_cols=68 Identities=9% Similarity=0.113 Sum_probs=39.7
Q ss_pred CchHHHHHHHHHhccccccHHHHhccCCCCCCcceEEeecCCCCH---------HHHHHHHHCCCCCeeEEeec--hHHH
Q 032721 34 KPEMNGLMRKAMSGVSVPFMTSVLDGYDGFKGVKRLVDVGGSAGD---------CLRMILQKHPFICEGINFDL--PEVV 102 (135)
Q Consensus 34 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~---------~~~~l~~~~p~l~~~~~~D~--p~~~ 102 (135)
|+. .+.|.+++.......+...+..+ ......++|||+++.. +...+.+.. ++ -+.+|- |+++
T Consensus 9 n~~-~~~~~~~~~~~d~~~i~~~A~~~--~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~-~~--plsIDT~~~~v~ 82 (261)
T PRK07535 9 NGT-RKSIAEAIEAKDAAFIQKLALKQ--AEAGADYLDVNAGTAVEEEPETMEWLVETVQEVV-DV--PLCIDSPNPAAI 82 (261)
T ss_pred chh-hHHHHHHHHcCCHHHHHHHHHHH--HHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhC-CC--CEEEeCCCHHHH
Confidence 455 67788888877655443333333 2345789999999862 122222222 22 367786 7777
Q ss_pred HhCCC
Q 032721 103 AEAPS 107 (135)
Q Consensus 103 ~~a~~ 107 (135)
+.|-+
T Consensus 83 eaaL~ 87 (261)
T PRK07535 83 EAGLK 87 (261)
T ss_pred HHHHH
Confidence 76644
No 424
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=39.27 E-value=36 Score=27.18 Aligned_cols=30 Identities=20% Similarity=0.191 Sum_probs=24.6
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.++=||||+|.+..++....-+.+ ++++|.
T Consensus 6 dvvVIG~GpaG~~aA~~aa~~G~~-v~lie~ 35 (472)
T PRK05976 6 DLVIIGGGPGGYVAAIRAGQLGLK-TALVEK 35 (472)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCe-EEEEEc
Confidence 477899999888887777767778 999985
No 425
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=39.14 E-value=4.5 Score=24.62 Aligned_cols=57 Identities=23% Similarity=0.175 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHCCCC----CeeEEe-ec-hHHHHhCCCCCCcEEEecCCCCCCCCCcEEEec
Q 032721 75 SAGDCLRMILQKHPFI----CEGINF-DL-PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMK 131 (135)
Q Consensus 75 G~G~~~~~l~~~~p~l----~~~~~~-D~-p~~~~~a~~~~rv~~~~gd~~~~~p~~D~~~l~ 131 (135)
|.|.++.+|++..-+. .++++. +. |+..+...+.-.+.+...|.-+.+..+|++++.
T Consensus 6 G~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvila 68 (96)
T PF03807_consen 6 GAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILA 68 (96)
T ss_dssp STSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-
T ss_pred CCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEE
Confidence 4565555555432111 136634 77 666655433333444443332223456777764
No 426
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=39.05 E-value=37 Score=27.15 Aligned_cols=30 Identities=17% Similarity=0.077 Sum_probs=24.9
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.|+=||+|+|.+..++....-..+ ++++|.
T Consensus 5 DvvVIG~GpaG~~AA~~aa~~G~~-V~liE~ 34 (466)
T PRK06115 5 DVVIIGGGPGGYNAAIRAGQLGLK-VACVEG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCe-EEEEec
Confidence 477899999988888887777788 999984
No 427
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=39.02 E-value=31 Score=27.71 Aligned_cols=29 Identities=17% Similarity=-0.011 Sum_probs=23.0
Q ss_pred EEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 69 LVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 69 vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
|+-||+|.|.++.+..-+....+ +++++.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~-V~VlE~ 29 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIP-VTVVEQ 29 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCc-EEEEEC
Confidence 46699999988888776666778 888875
No 428
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=38.97 E-value=42 Score=24.63 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=20.4
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCC-eeEEeec-hHHHHhCC
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFIC-EGINFDL-PEVVAEAP 106 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~-~~~~~D~-p~~~~~a~ 106 (135)
.+|+=-||++| ++.++++++-++- ++++.-+ .+.++.++
T Consensus 6 nTiLITGG~sG-IGl~lak~f~elgN~VIi~gR~e~~L~e~~ 46 (245)
T COG3967 6 NTILITGGASG-IGLALAKRFLELGNTVIICGRNEERLAEAK 46 (245)
T ss_pred cEEEEeCCcch-hhHHHHHHHHHhCCEEEEecCcHHHHHHHH
Confidence 35665555555 3455555555552 3555555 55555544
No 429
>PF14881 Tubulin_3: Tubulin domain
Probab=38.62 E-value=40 Score=23.63 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=30.9
Q ss_pred HHHHhccCCCCCCcceEEeecCCCCHHHH----HHHHHCCCCCee
Q 032721 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLR----MILQKHPFICEG 93 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~~vvDvGgG~G~~~~----~l~~~~p~l~~~ 93 (135)
....++..|.+.+++.++|+-+|-|.++. .|..+||+.. +
T Consensus 64 lR~f~EECD~lQGfQ~~~d~d~gwgGfas~~Le~L~DEy~k~~-i 107 (180)
T PF14881_consen 64 LRFFLEECDSLQGFQVLTDVDDGWGGFASSLLEHLRDEYPKKP-I 107 (180)
T ss_pred HHHHHHHcccccceEEEecCCCchHhHHHHHHHHHHHHcCCCc-e
Confidence 45678888877888999999888886555 5566888876 5
No 430
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=38.57 E-value=39 Score=25.95 Aligned_cols=30 Identities=10% Similarity=-0.003 Sum_probs=25.4
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.|+=||||...++.++.-+..+++ ++++|.
T Consensus 9 dViIVGaG~~Gl~~A~~L~~~G~~-v~liE~ 38 (388)
T PRK07494 9 DIAVIGGGPAGLAAAIALARAGAS-VALVAP 38 (388)
T ss_pred CEEEECcCHHHHHHHHHHhcCCCe-EEEEeC
Confidence 588899999988888777777888 999997
No 431
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=38.35 E-value=33 Score=26.34 Aligned_cols=30 Identities=27% Similarity=0.218 Sum_probs=20.3
Q ss_pred EEeecCCCCH--HHHHHHHHCCCCC-eeEEeec
Q 032721 69 LVDVGGSAGD--CLRMILQKHPFIC-EGINFDL 98 (135)
Q Consensus 69 vvDvGgG~G~--~~~~l~~~~p~l~-~~~~~D~ 98 (135)
||-+|||+|. ++..|.+...++. -+++.|-
T Consensus 1 vV~igGGtGl~~ll~gLk~~~~~ltaIVtv~Dd 33 (310)
T TIGR01826 1 VVAIGGGTGLSVLLRGLKELDSRITAIVTVADD 33 (310)
T ss_pred CEEEeCcchHHHHHHHHHhcCCCcEEEEECCcC
Confidence 4678999994 7777777666666 2455564
No 432
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=38.21 E-value=20 Score=27.46 Aligned_cols=39 Identities=21% Similarity=0.410 Sum_probs=30.9
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeechHHHHhC
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDLPEVVAEA 105 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~p~~~~~a 105 (135)
-.||--+||.|.=+..|++.+|.++...++|+..+--.+
T Consensus 31 VAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVa 69 (345)
T KOG1494|consen 31 VAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVA 69 (345)
T ss_pred EEEEecCCccCccHHHHHhcCcccceeeeeecccCCccc
Confidence 467888899999999999999998767889985443333
No 433
>PRK06126 hypothetical protein; Provisional
Probab=38.21 E-value=39 Score=27.49 Aligned_cols=31 Identities=13% Similarity=0.003 Sum_probs=27.2
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
..|+=||||.+.++.++.-...+++ ++++|.
T Consensus 8 ~~VlIVGaGpaGL~~Al~La~~G~~-v~viEr 38 (545)
T PRK06126 8 TPVLIVGGGPVGLALALDLGRRGVD-SILVER 38 (545)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCc-EEEEeC
Confidence 4688899999999888888888899 999996
No 434
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=37.95 E-value=24 Score=28.76 Aligned_cols=12 Identities=33% Similarity=0.731 Sum_probs=9.8
Q ss_pred cceEEeecCCCC
Q 032721 66 VKRLVDVGGSAG 77 (135)
Q Consensus 66 ~~~vvDvGgG~G 77 (135)
...++|||||+=
T Consensus 133 ~~lviDIGGGSt 144 (496)
T PRK11031 133 QRLVVDIGGAST 144 (496)
T ss_pred CEEEEEecCCee
Confidence 358999999983
No 435
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=37.84 E-value=40 Score=28.60 Aligned_cols=30 Identities=17% Similarity=-0.001 Sum_probs=25.4
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
-|+=||||+|.+..++...--+++ +.++|.
T Consensus 118 DviVIG~G~gG~~aA~~aa~~G~k-V~lie~ 147 (659)
T PTZ00153 118 DVGIIGCGVGGHAAAINAMERGLK-VIIFTG 147 (659)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCc-EEEEeC
Confidence 478899999998888888777888 999983
No 436
>PLN02661 Putative thiazole synthesis
Probab=37.83 E-value=51 Score=25.86 Aligned_cols=31 Identities=13% Similarity=0.040 Sum_probs=24.0
Q ss_pred ceEEeecCCCCHHHHHHHHH-CCCCCeeEEeec
Q 032721 67 KRLVDVGGSAGDCLRMILQK-HPFICEGINFDL 98 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~-~p~l~~~~~~D~ 98 (135)
..|+-||+|...+..++... .|+++ ++++|.
T Consensus 93 ~DVlIVGaG~AGl~AA~~La~~~g~k-V~viEk 124 (357)
T PLN02661 93 TDVVIVGAGSAGLSCAYELSKNPNVK-VAIIEQ 124 (357)
T ss_pred CCEEEECCHHHHHHHHHHHHHcCCCe-EEEEec
Confidence 46888999887766666554 67888 999996
No 437
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=37.72 E-value=40 Score=27.02 Aligned_cols=32 Identities=9% Similarity=-0.035 Sum_probs=25.9
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeech
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDLP 99 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~p 99 (135)
..|+=||+|.|.++.+..-+..+.+ +++++..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~-v~vlE~~ 33 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYR-VTLLEQH 33 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCe-EEEEecC
Confidence 3578899999988888777777888 9999863
No 438
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=37.67 E-value=43 Score=26.46 Aligned_cols=30 Identities=7% Similarity=-0.169 Sum_probs=23.0
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.|+=||+|++.+..++..+.-.++ ++++|.
T Consensus 5 DvvVIGgGpaGl~aA~~la~~g~~-V~lie~ 34 (441)
T PRK08010 5 QAVIIGFGKAGKTLAVTLAKAGWR-VALIEQ 34 (441)
T ss_pred CEEEECCCHhHHHHHHHHHHCCCe-EEEEcC
Confidence 477799999887777666555677 888885
No 439
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.37 E-value=49 Score=25.18 Aligned_cols=59 Identities=15% Similarity=0.032 Sum_probs=36.7
Q ss_pred EEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC-CCcEEEecCCCCC----CCCCcEEEe
Q 032721 69 LVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKS----IPAADAIFM 130 (135)
Q Consensus 69 vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~-~rv~~~~gd~~~~----~p~~D~~~l 130 (135)
|+|+=||.|.+...+.+.. .+-+...|. +.+++.-+.+ +. .+..+|.-+- +|..|+++.
T Consensus 1 vidLF~G~GG~~~Gl~~aG--~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~g 65 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG--FKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLG 65 (315)
T ss_pred CEEEecCccHHHHHHHHcC--CeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEe
Confidence 5899999999999998764 551345787 6666654443 33 3344565331 444576654
No 440
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=37.02 E-value=33 Score=20.95 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=13.9
Q ss_pred ecCCCC-----HHHHHHHHHCCCCCeeEEe
Q 032721 72 VGGSAG-----DCLRMILQKHPFICEGINF 96 (135)
Q Consensus 72 vGgG~G-----~~~~~l~~~~p~l~~~~~~ 96 (135)
||||+| .++..+++..+..+ ++++
T Consensus 2 IagGtGIaP~~s~l~~~~~~~~~~~-v~l~ 30 (109)
T PF00175_consen 2 IAGGTGIAPFLSMLRYLLERNDNRK-VTLF 30 (109)
T ss_dssp EEEGGGGHHHHHHHHHHHHHTCTSE-EEEE
T ss_pred eecceeHHHHHHHHHHHHHhCCCCC-EEEE
Confidence 677788 35556665544444 5544
No 441
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=36.87 E-value=20 Score=26.58 Aligned_cols=12 Identities=25% Similarity=0.578 Sum_probs=10.0
Q ss_pred CcceEEeecCCC
Q 032721 65 GVKRLVDVGGSA 76 (135)
Q Consensus 65 ~~~~vvDvGgG~ 76 (135)
+...++|||||+
T Consensus 112 ~~~lviDIGGGS 123 (285)
T PF02541_consen 112 KNGLVIDIGGGS 123 (285)
T ss_dssp SSEEEEEEESSE
T ss_pred CCEEEEEECCCc
Confidence 446899999997
No 442
>PRK13699 putative methylase; Provisional
Probab=36.81 E-value=1.1e+02 Score=22.17 Aligned_cols=40 Identities=15% Similarity=0.014 Sum_probs=31.4
Q ss_pred CcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCC
Q 032721 65 GVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVAEAPS 107 (135)
Q Consensus 65 ~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~ 107 (135)
+...|+|-=||+|..+.+..+. +-+ ++++|+ |.-.+.+.+
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~--~r~-~~g~e~~~~y~~~~~~ 203 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQS--GRR-YIGIELLEQYHRAGQQ 203 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHc--CCC-EEEEecCHHHHHHHHH
Confidence 3478999999999999888876 334 999999 777666643
No 443
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=36.76 E-value=28 Score=23.60 Aligned_cols=34 Identities=9% Similarity=-0.077 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHCCCCCeeEEeechHHHHhCCCC
Q 032721 74 GSAGDCLRMILQKHPFICEGINFDLPEVVAEAPSI 108 (135)
Q Consensus 74 gG~G~~~~~l~~~~p~l~~~~~~D~p~~~~~a~~~ 108 (135)
||||.=..-.+.++|+++ +.+.--+.....++.+
T Consensus 63 CGTGiG~siaANK~~GIR-AA~~~d~~~A~~ar~h 96 (142)
T PRK08621 63 DAYGAGSFMVATKIKGMV-AAEVSDERSAYMTRGH 96 (142)
T ss_pred cCCChhhhhhhhcCCCeE-EEEECCHHHHHHHHHH
Confidence 688888888899999999 5444335555555543
No 444
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=36.75 E-value=74 Score=21.76 Aligned_cols=33 Identities=27% Similarity=0.290 Sum_probs=24.2
Q ss_pred CcceEEeecCCCC------------HH--HHHHHHHCCCCCeeEEeec
Q 032721 65 GVKRLVDVGGSAG------------DC--LRMILQKHPFICEGINFDL 98 (135)
Q Consensus 65 ~~~~vvDvGgG~G------------~~--~~~l~~~~p~l~~~~~~D~ 98 (135)
....++|+|++.= .. ...+..+.|+.+ ++++|.
T Consensus 35 ~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~~~~Dp~v~-vIlvd~ 81 (153)
T PF00549_consen 35 GPANFLDLGGDAFTQGRPHPMIDPSTRNEALEIEAADPEVK-VILVDI 81 (153)
T ss_dssp TEEEEEECTSSSSHTTS--TTT-SSHHHHHHHHHHTSTTES-EEEEEE
T ss_pred CceeEEEeCCCcccccCcCCCcCHHHHHHHHHHHhcCCCcc-EEEEEe
Confidence 4579999999876 23 334455678888 999995
No 445
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=36.52 E-value=45 Score=25.70 Aligned_cols=31 Identities=13% Similarity=0.007 Sum_probs=25.9
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
..|+=||||...++.++.-..-+++ ++++|.
T Consensus 7 ~dV~IvGaG~aGl~~A~~La~~G~~-v~liE~ 37 (392)
T PRK08773 7 RDAVIVGGGVVGAACALALADAGLS-VALVEG 37 (392)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCE-EEEEeC
Confidence 3577799999988888877777888 999997
No 446
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=36.30 E-value=1e+02 Score=24.56 Aligned_cols=54 Identities=15% Similarity=0.071 Sum_probs=36.8
Q ss_pred ceEEeecCC-CCHHHHHHHHHCCCCCeeEEeec-hHHHHhCCCC--CCcEEEecCCCCC
Q 032721 67 KRLVDVGGS-AGDCLRMILQKHPFICEGINFDL-PEVVAEAPSI--PGVTHIGGDMFKS 121 (135)
Q Consensus 67 ~~vvDvGgG-~G~~~~~l~~~~p~l~~~~~~D~-p~~~~~a~~~--~rv~~~~gd~~~~ 121 (135)
..|+=|||| -|......+.++.+-+ +++-|+ ++-++.+... ++++.+.-|..+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~-V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~ 59 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGE-VTIADRSKEKCARIAELIGGKVEALQVDAADV 59 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCce-EEEEeCCHHHHHHHHhhccccceeEEecccCh
Confidence 356777873 2444444444555566 999999 6777777654 5899999888654
No 447
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=35.79 E-value=43 Score=26.49 Aligned_cols=29 Identities=17% Similarity=0.040 Sum_probs=23.4
Q ss_pred EEeecCCCCHHHHHHHHHC----CCCCeeEEeec
Q 032721 69 LVDVGGSAGDCLRMILQKH----PFICEGINFDL 98 (135)
Q Consensus 69 vvDvGgG~G~~~~~l~~~~----p~l~~~~~~D~ 98 (135)
|+=||||.+.++.++.-+. .+++ ++++|.
T Consensus 3 V~IVGaGp~Gl~~A~~La~~~~~~G~~-v~viE~ 35 (437)
T TIGR01989 3 VVIVGGGPVGLALAAALGNNPLTKDLK-VLLLDA 35 (437)
T ss_pred EEEECCcHHHHHHHHHHhcCcccCCCe-EEEEeC
Confidence 7779999998777776654 5778 999997
No 448
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=35.44 E-value=49 Score=26.55 Aligned_cols=31 Identities=16% Similarity=0.102 Sum_probs=28.2
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
..|+=||||-+.++.++.-+..+.+ +++++.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~-v~VlE~ 33 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGID-VVVLES 33 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCe-EEEEee
Confidence 4688899999999999999999999 999987
No 449
>PRK06184 hypothetical protein; Provisional
Probab=35.42 E-value=46 Score=26.78 Aligned_cols=31 Identities=10% Similarity=-0.083 Sum_probs=26.1
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
..|+=||+|...++.++.-..-+++ ++++|.
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~-v~viE~ 34 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVS-FRLIEK 34 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCc-EEEEeC
Confidence 3588899999988888877777888 999996
No 450
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=35.29 E-value=45 Score=25.85 Aligned_cols=31 Identities=6% Similarity=-0.079 Sum_probs=27.0
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
..|+=||||...++.+++-+.-.++ ++++|.
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~-V~l~E~ 33 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLD-VTLLER 33 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCc-EEEEcc
Confidence 3588899999998888888888899 999997
No 451
>PRK10854 exopolyphosphatase; Provisional
Probab=35.22 E-value=27 Score=28.56 Aligned_cols=11 Identities=36% Similarity=0.800 Sum_probs=9.4
Q ss_pred cceEEeecCCC
Q 032721 66 VKRLVDVGGSA 76 (135)
Q Consensus 66 ~~~vvDvGgG~ 76 (135)
...|+|||||+
T Consensus 138 ~~lvvDIGGGS 148 (513)
T PRK10854 138 RKLVIDIGGGS 148 (513)
T ss_pred CeEEEEeCCCe
Confidence 36899999987
No 452
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=35.15 E-value=50 Score=23.99 Aligned_cols=30 Identities=7% Similarity=0.087 Sum_probs=21.8
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.|+=||+|.+.+..+..-..-..+ ++++|.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~-v~lie~ 31 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLK-TLIIEG 31 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCC-EEEEec
Confidence 367799998877766555445677 888885
No 453
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=35.11 E-value=48 Score=26.60 Aligned_cols=30 Identities=7% Similarity=0.022 Sum_probs=23.6
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.|+=||+|+|.+..+...+.-..+ ++++|.
T Consensus 6 DvvVIG~GpaG~~aA~~aa~~G~~-V~lie~ 35 (471)
T PRK06467 6 QVVVLGAGPAGYSAAFRAADLGLE-TVCVER 35 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCc-EEEEec
Confidence 477899999887776666656778 999985
No 454
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=34.82 E-value=38 Score=25.96 Aligned_cols=29 Identities=28% Similarity=0.143 Sum_probs=18.4
Q ss_pred EEeecCCCCH--HHHHHHHHCCCCC-eeEEee
Q 032721 69 LVDVGGSAGD--CLRMILQKHPFIC-EGINFD 97 (135)
Q Consensus 69 vvDvGgG~G~--~~~~l~~~~p~l~-~~~~~D 97 (135)
||=+|||+|. ++..|.+.-.++. -++..|
T Consensus 1 iv~igGGtGl~~ll~gLk~~~~~ltaIVtv~D 32 (309)
T cd07044 1 VVVFGGGTGLPVLLRGLKEFPVEITAIVTVAD 32 (309)
T ss_pred CEEEeccccHHHHHHHHHhcCCceEEEEECCc
Confidence 4568999984 6777776555555 134445
No 455
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=34.75 E-value=43 Score=25.61 Aligned_cols=43 Identities=14% Similarity=0.126 Sum_probs=29.5
Q ss_pred HHHHhccCCCCCCcceEEeecCCCCH----HHHHHHHHCCCCCeeEEeech
Q 032721 53 MTSVLDGYDGFKGVKRLVDVGGSAGD----CLRMILQKHPFICEGINFDLP 99 (135)
Q Consensus 53 ~~~~~~~~~~~~~~~~vvDvGgG~G~----~~~~l~~~~p~l~~~~~~D~p 99 (135)
++++.+..+ - . -..+-.|.|||. ++..|.+++|+++ ++++|..
T Consensus 159 ~~EI~~~~~-g-~-~d~fVagvGTGGTitGvar~Lk~~~p~i~-iv~vdP~ 205 (300)
T COG0031 159 GPEIWQQTD-G-K-VDAFVAGVGTGGTITGVARYLKERNPNVR-IVAVDPE 205 (300)
T ss_pred HHHHHHHhC-C-C-CCEEEEeCCcchhHHHHHHHHHhhCCCcE-EEEECCC
Confidence 445555544 1 1 334447778874 6778889999999 9999973
No 456
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=34.63 E-value=43 Score=27.15 Aligned_cols=30 Identities=17% Similarity=0.000 Sum_probs=22.7
Q ss_pred eEEeecCCCCHHHHHHHHHCC-CCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHP-FICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p-~l~~~~~~D~ 98 (135)
-|+=||||+|.+..++...-. +.+ +.++|.
T Consensus 5 DviVIG~G~~G~~aA~~aa~~~g~~-V~lie~ 35 (486)
T TIGR01423 5 DLVVIGAGSGGLEAGWNAATLYKKR-VAVIDV 35 (486)
T ss_pred CEEEECCChHHHHHHHHHHHhcCCE-EEEEec
Confidence 377799999988776666554 677 888884
No 457
>PLN02463 lycopene beta cyclase
Probab=34.53 E-value=43 Score=26.89 Aligned_cols=31 Identities=19% Similarity=0.064 Sum_probs=25.3
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
-.|+=||||...++.+..-...+++ ++++|.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~-V~liE~ 59 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLS-VCCIDP 59 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCe-EEEecc
Confidence 3678899999988887666667888 999996
No 458
>PRK06545 prephenate dehydrogenase; Validated
Probab=34.50 E-value=65 Score=24.93 Aligned_cols=30 Identities=23% Similarity=0.208 Sum_probs=14.9
Q ss_pred eEEeecCCC--CHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSA--GDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~--G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
+|.=||.|. |.++..+.+..+... ++..|.
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~~v~-i~~~~~ 33 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPDVF-IIGYDP 33 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCCCeE-EEEeCC
Confidence 345565543 345555555554444 444443
No 459
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=34.44 E-value=66 Score=25.85 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=25.8
Q ss_pred CcceEEeecCCCCH--HHHHHHHHCCCCCeeEEeec
Q 032721 65 GVKRLVDVGGSAGD--CLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 65 ~~~~vvDvGgG~G~--~~~~l~~~~p~l~~~~~~D~ 98 (135)
+..+|+=||+|.-. .+..|++++|+++ +++++-
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~-Vdi~Ek 53 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAH-VDIFEK 53 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCe-eEeeec
Confidence 34599999999853 3556777789999 999986
No 460
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=34.41 E-value=47 Score=26.34 Aligned_cols=30 Identities=3% Similarity=-0.100 Sum_probs=24.1
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.|+=||+|.|.+..++.......+ ++++|.
T Consensus 5 DvvIIG~G~aGl~aA~~l~~~g~~-v~lie~ 34 (460)
T PRK06292 5 DVIVIGAGPAGYVAARRAAKLGKK-VALIEK 34 (460)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCe-EEEEeC
Confidence 377899999888887776666778 988885
No 461
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=34.14 E-value=54 Score=24.57 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=18.1
Q ss_pred CCCcceEEeecC-------------------------CCCHHHHHHHHH
Q 032721 63 FKGVKRLVDVGG-------------------------SAGDCLRMILQK 86 (135)
Q Consensus 63 ~~~~~~vvDvGg-------------------------G~G~~~~~l~~~ 86 (135)
++...+|+|||| |||.++..++++
T Consensus 95 ~p~~~tIiDIGGQD~K~I~~~~~G~v~~f~MNdkCAAGTG~FLe~~A~~ 143 (262)
T TIGR02261 95 NPEARAVLDIGALHGRAIRMDERGKVEAYKMTSQCASGSGQFLENIARY 143 (262)
T ss_pred CCCCCEEEEeCCCceEEEEEcCCCcEeeEEecCcccccccHHHHHHHHH
Confidence 355678888887 888888777663
No 462
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=34.13 E-value=41 Score=25.77 Aligned_cols=29 Identities=24% Similarity=0.210 Sum_probs=18.2
Q ss_pred EEeecCCCCH--HHHHHHHHCCCCC-eeEEee
Q 032721 69 LVDVGGSAGD--CLRMILQKHPFIC-EGINFD 97 (135)
Q Consensus 69 vvDvGgG~G~--~~~~l~~~~p~l~-~~~~~D 97 (135)
||=+|||||. ++..|.+...++. -+++.|
T Consensus 1 iV~igGGtGl~~ll~gLk~~~~~itaIVtv~D 32 (308)
T cd07187 1 IVAFGGGTGLSTLLRGLKKYTHNLTAIVTVTD 32 (308)
T ss_pred CEEEeccccHHHHHHHHHhcCCceEEEEECCC
Confidence 4568888884 6667776655555 234445
No 463
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=33.91 E-value=36 Score=25.17 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=34.6
Q ss_pred HHHHHHHhccccccHHHHhccCCCCCCcceEEeecCCCCHHH--HHH------HHHCCCCCeeEEeec--hHHHHhCCC
Q 032721 39 GLMRKAMSGVSVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCL--RMI------LQKHPFICEGINFDL--PEVVAEAPS 107 (135)
Q Consensus 39 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~--~~l------~~~~p~l~~~~~~D~--p~~~~~a~~ 107 (135)
..|.+++...+...+...+..+ .+....++|||++.|... .++ ++..-++ -+.+|- |++++.|-+
T Consensus 14 ~~~~~~~~~~~~d~~~~~A~~~--~~~GAdiIDIG~~~~~~~~~ee~~r~v~~i~~~~~~--piSIDT~~~~v~e~aL~ 88 (252)
T cd00740 14 KKFRELIKAEDYDEALDVARQQ--VEGGAQILDLNVDYGGLDGVSAMKWLLNLLATEPTV--PLMLDSTNWEVIEAGLK 88 (252)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH--HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCC--cEEeeCCcHHHHHHHHh
Confidence 5566666665543332333332 234578999999987421 111 2222122 367786 677776644
No 464
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=33.64 E-value=54 Score=25.65 Aligned_cols=30 Identities=17% Similarity=0.098 Sum_probs=24.6
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.|+=||+|....+.++..+..+++ ++++|.
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~-V~llE~ 31 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQ-TFLLER 31 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCc-EEEEec
Confidence 477899999888887777667888 999986
No 465
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=33.35 E-value=48 Score=25.42 Aligned_cols=30 Identities=10% Similarity=0.028 Sum_probs=24.4
Q ss_pred eEEeecCCCCHHHHHHHHHCC---CCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHP---FICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p---~l~~~~~~D~ 98 (135)
.|+=||+|.+.++.++.-+.- +.+ ++++|.
T Consensus 5 dv~IvGaG~aGl~~A~~L~~~~~~G~~-v~v~E~ 37 (395)
T PRK05732 5 DVIIVGGGMAGATLALALSRLSHGGLP-VALIEA 37 (395)
T ss_pred CEEEECcCHHHHHHHHHhhhcccCCCE-EEEEeC
Confidence 578899999988777776654 788 999997
No 466
>PRK08244 hypothetical protein; Provisional
Probab=33.33 E-value=48 Score=26.60 Aligned_cols=30 Identities=7% Similarity=-0.023 Sum_probs=24.9
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.|+=||+|...++.++.-...+++ ++++|.
T Consensus 4 dVlIVGaGpaGl~lA~~L~~~G~~-v~viEr 33 (493)
T PRK08244 4 EVIIIGGGPVGLMLASELALAGVK-TCVIER 33 (493)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCc-EEEEec
Confidence 477799999888887777777888 999996
No 467
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=33.33 E-value=57 Score=25.27 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=19.1
Q ss_pred CcceEEeecCCCCH--HHHHHHHHCC-CCC
Q 032721 65 GVKRLVDVGGSAGD--CLRMILQKHP-FIC 91 (135)
Q Consensus 65 ~~~~vvDvGgG~G~--~~~~l~~~~p-~l~ 91 (135)
+...|+-||||+|. ++..+.+.-| ++.
T Consensus 6 ~~~kvvvlgGGtGl~~lL~gLk~~~~~~iT 35 (323)
T COG0391 6 KKPKVVVLGGGTGLPKLLSGLKRLLPSEIT 35 (323)
T ss_pred cCceEEEEcCCCCHHHHHHHHHhhcCceEE
Confidence 34578889999995 6777777664 444
No 468
>PRK06101 short chain dehydrogenase; Provisional
Probab=33.33 E-value=72 Score=22.57 Aligned_cols=51 Identities=10% Similarity=0.037 Sum_probs=29.4
Q ss_pred eEEeecCCCCHHHHHHHHHCC--CCCeeEEeec-hHHHHhCC-CCCCcEEEecCCCC
Q 032721 68 RLVDVGGSAGDCLRMILQKHP--FICEGINFDL-PEVVAEAP-SIPGVTHIGGDMFK 120 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p--~l~~~~~~D~-p~~~~~a~-~~~rv~~~~gd~~~ 120 (135)
+++ |-||+|.++.++++..- +.+ +++.++ ++.++... ...++.++.+|+.+
T Consensus 3 ~vl-ItGas~giG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~ 57 (240)
T PRK06101 3 AVL-ITGATSGIGKQLALDYAKQGWQ-VIACGRNQSVLDELHTQSANIFTLAFDVTD 57 (240)
T ss_pred EEE-EEcCCcHHHHHHHHHHHhCCCE-EEEEECCHHHHHHHHHhcCCCeEEEeeCCC
Confidence 344 44456776666665543 345 888887 44443322 22467777788754
No 469
>PRK14694 putative mercuric reductase; Provisional
Probab=33.27 E-value=56 Score=26.11 Aligned_cols=30 Identities=3% Similarity=-0.055 Sum_probs=24.4
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.|+=||+|.|.+..++..+.-..+ ++++|.
T Consensus 8 dviVIGaG~aG~~aA~~l~~~g~~-v~lie~ 37 (468)
T PRK14694 8 HIAVIGSGGSAMAAALKATERGAR-VTLIER 37 (468)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCc-EEEEEc
Confidence 578899999888777776666778 999985
No 470
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=33.23 E-value=62 Score=25.68 Aligned_cols=30 Identities=10% Similarity=0.091 Sum_probs=23.2
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.|+=||+|++.+..++..+--..+ ++++|.
T Consensus 6 DvvVIGaGpaG~~aA~~aa~~G~~-V~liE~ 35 (462)
T PRK06416 6 DVIVIGAGPGGYVAAIRAAQLGLK-VAIVEK 35 (462)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCc-EEEEec
Confidence 478899999887776665555778 999985
No 471
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=33.13 E-value=53 Score=26.33 Aligned_cols=30 Identities=13% Similarity=0.125 Sum_probs=26.0
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.++=||+|++.++.++.....+++ ++++|.
T Consensus 6 DviIIG~G~aG~~aA~~~~~~g~~-v~lie~ 35 (475)
T PRK06327 6 DVVVIGAGPGGYVAAIRAAQLGLK-VACIEA 35 (475)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCe-EEEEec
Confidence 477899999999988888888888 999995
No 472
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=32.80 E-value=21 Score=24.31 Aligned_cols=38 Identities=13% Similarity=-0.177 Sum_probs=27.1
Q ss_pred EeecCCCCHHHHHHHHHCCCCCeeEEeechHHHHhCCCC
Q 032721 70 VDVGGSAGDCLRMILQKHPFICEGINFDLPEVVAEAPSI 108 (135)
Q Consensus 70 vDvGgG~G~~~~~l~~~~p~l~~~~~~D~p~~~~~a~~~ 108 (135)
-=+-||||.=....+.++|+++ +.+.--+.....++.+
T Consensus 62 GIliCGtGiG~siaANK~~GiR-AA~~~d~~sA~~ar~h 99 (148)
T TIGR02133 62 GIVIGGSGNGEAIAANKVKGAR-AALAWDTASAGRARLH 99 (148)
T ss_pred EEEEcCCChhheeeecccCCeE-EEEECCHHHHHHHHHH
Confidence 3356899988888889999999 6555445666666554
No 473
>PRK11445 putative oxidoreductase; Provisional
Probab=32.74 E-value=56 Score=24.93 Aligned_cols=30 Identities=13% Similarity=0.015 Sum_probs=23.7
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeech
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDLP 99 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~p 99 (135)
.|+=||||.+.++.++.-+.. ++ ++++|..
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~-V~liE~~ 32 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MK-VIAIDKK 32 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CC-EEEEECC
Confidence 477799999887777766665 88 9999973
No 474
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=32.74 E-value=1.8e+02 Score=20.57 Aligned_cols=61 Identities=18% Similarity=0.071 Sum_probs=32.9
Q ss_pred ceEEeecCCCCHH--HHHHHHHCCCCCeeEEeec---hHHHHhCCCCCCcEEEecCCCCC-CCCCcEEEec
Q 032721 67 KRLVDVGGSAGDC--LRMILQKHPFICEGINFDL---PEVVAEAPSIPGVTHIGGDMFKS-IPAADAIFMK 131 (135)
Q Consensus 67 ~~vvDvGgG~G~~--~~~l~~~~p~l~~~~~~D~---p~~~~~a~~~~rv~~~~gd~~~~-~p~~D~~~l~ 131 (135)
++++=||||.=.. +..|.+.. .+ +++++. +...+.+. ..++.+....+-.. +..+|+++..
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~g--a~-V~VIs~~~~~~l~~l~~-~~~i~~~~~~~~~~~l~~adlViaa 77 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYG--AH-IVVISPELTENLVKLVE-EGKIRWKQKEFEPSDIVDAFLVIAA 77 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--Ce-EEEEcCCCCHHHHHHHh-CCCEEEEecCCChhhcCCceEEEEc
Confidence 6788898865332 22344432 45 777753 22223222 24577766555433 5567887653
No 475
>KOG3456 consensus NADH:ubiquinone oxidoreductase, NDUFS6/13 kDa subunit [Energy production and conversion]
Probab=32.62 E-value=54 Score=21.16 Aligned_cols=56 Identities=20% Similarity=0.141 Sum_probs=40.1
Q ss_pred HHHHHHHHHhccccccHHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeechH
Q 032721 37 MNGLMRKAMSGVSVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDLPE 100 (135)
Q Consensus 37 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~p~ 100 (135)
+..+|..+|.......+-.+++..|..+-..+||-.-||+|.++ +|. . .+.+|.|.
T Consensus 48 r~~rf~~~kk~vn~n~~m~LI~e~Pp~e~d~RVV~CdGg~~aLG------HPk-v-yInLDk~~ 103 (120)
T KOG3456|consen 48 RGNRFVKWKKDVNENSAMELISEVPPIEVDGRVVACDGGTPALG------HPK-V-YINLDKPG 103 (120)
T ss_pred hHHHHHhhhhhcCccchhhhhhcCChhhccceEEEecCCCCCCC------CCe-E-EEEcCCCC
Confidence 55789999999888776677777762222478888888888876 554 2 57778754
No 476
>PRK08267 short chain dehydrogenase; Provisional
Probab=31.99 E-value=59 Score=23.24 Aligned_cols=52 Identities=13% Similarity=-0.050 Sum_probs=29.5
Q ss_pred ceEEeecCCCCHHHHHHHHHCC--CCCeeEEeec-hHHHHhCCC---CCCcEEEecCCCC
Q 032721 67 KRLVDVGGSAGDCLRMILQKHP--FICEGINFDL-PEVVAEAPS---IPGVTHIGGDMFK 120 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p--~l~~~~~~D~-p~~~~~a~~---~~rv~~~~gd~~~ 120 (135)
++++-.|| +|.++.++++..- ..+ +++++. ++.++.... ..++.++.+|+.+
T Consensus 2 k~vlItGa-sg~iG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~ 59 (260)
T PRK08267 2 KSIFITGA-ASGIGRATALLFAAEGWR-VGAYDINEAGLAALAAELGAGNAWTGALDVTD 59 (260)
T ss_pred cEEEEeCC-CchHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHhcCCceEEEEecCCC
Confidence 34565554 5555555554433 345 888886 443333221 2468888888865
No 477
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=31.72 E-value=74 Score=22.88 Aligned_cols=48 Identities=17% Similarity=0.156 Sum_probs=31.4
Q ss_pred cHHHHhccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHHHH
Q 032721 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEVVA 103 (135)
Q Consensus 52 ~~~~~~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~~~ 103 (135)
.++.|.+.++ -.+..++||.=||+|.++..+++ +..+ +++=|+ +.++.
T Consensus 8 l~~~I~~~ip-~~~~~~~vepF~G~g~V~~~~~~--~~~~-vi~ND~~~~l~~ 56 (260)
T PF02086_consen 8 LAKWIIELIP-KNKHKTYVEPFAGGGSVFLNLKQ--PGKR-VIINDINPDLIN 56 (260)
T ss_dssp GHHHHHHHS--S-S-SEEEETT-TTSHHHHCC-----SSE-EEEEES-HHHHH
T ss_pred HHHHHHHHcC-CCCCCEEEEEecchhHHHHHhcc--cccc-eeeeechHHHHH
Confidence 4566777776 32678999999999999998877 4555 888898 54443
No 478
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=31.61 E-value=67 Score=25.92 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=24.9
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.-++-||||.|.+..++...--.++ -+++|-
T Consensus 40 ~DvvvIG~GpGGyvAAikAaQlGlk-TacvEk 70 (506)
T KOG1335|consen 40 YDVVVIGGGPGGYVAAIKAAQLGLK-TACVEK 70 (506)
T ss_pred CCEEEECCCCchHHHHHHHHHhcce-eEEEec
Confidence 3588899999999999988877777 556654
No 479
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=31.52 E-value=55 Score=25.93 Aligned_cols=30 Identities=10% Similarity=-0.095 Sum_probs=23.4
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.|+=||+|.+.+..++....-..+ ++++|.
T Consensus 7 DvvVIGaGpaG~~aA~~la~~G~~-v~liE~ 36 (461)
T PRK05249 7 DLVVIGSGPAGEGAAMQAAKLGKR-VAVIER 36 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCE-EEEEec
Confidence 478899999877776666555677 999986
No 480
>PTZ00058 glutathione reductase; Provisional
Probab=31.35 E-value=52 Score=27.33 Aligned_cols=30 Identities=13% Similarity=0.071 Sum_probs=24.4
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
-|+=||+|+|.+..++....-+.+ +.++|.
T Consensus 50 DvvVIG~G~aG~~aA~~aa~~G~~-ValIEk 79 (561)
T PTZ00058 50 DLIVIGGGSGGMAAARRAARNKAK-VALVEK 79 (561)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCe-EEEEec
Confidence 478899999888887777766788 988884
No 481
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=31.02 E-value=60 Score=25.71 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=22.1
Q ss_pred EEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 69 LVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 69 vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
|+=||||.+.+..+...+....+ ++++|.
T Consensus 4 vvVIG~G~aGl~aA~~la~~G~~-v~lie~ 32 (461)
T TIGR01350 4 VVVIGGGPGGYVAAIRAAQLGLK-VALVEK 32 (461)
T ss_pred EEEECCCHHHHHHHHHHHhCCCe-EEEEec
Confidence 77799998776666665556777 988885
No 482
>PLN02507 glutathione reductase
Probab=30.93 E-value=61 Score=26.33 Aligned_cols=30 Identities=13% Similarity=-0.007 Sum_probs=24.2
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
-++=||+|+|.+..++....-+++ +.++|.
T Consensus 27 DvvVIG~GpaG~~aA~~a~~~G~~-V~liE~ 56 (499)
T PLN02507 27 DLFVIGAGSGGVRAARFSANFGAK-VGICEL 56 (499)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCe-EEEEec
Confidence 478899999888777777766788 999983
No 483
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=30.88 E-value=52 Score=25.06 Aligned_cols=30 Identities=23% Similarity=0.214 Sum_probs=20.3
Q ss_pred eEEeecCCCCHHHHH--HHHH-CCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRM--ILQK-HPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~--l~~~-~p~l~~~~~~D~ 98 (135)
+||=||||.+.+..+ +.++ .|+.+ ++++|.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~-I~li~~ 33 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVR-VTLINP 33 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCE-EEEECC
Confidence 377899999865443 3222 46777 999985
No 484
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=30.87 E-value=49 Score=24.37 Aligned_cols=31 Identities=6% Similarity=-0.035 Sum_probs=24.6
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeech
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDLP 99 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~p 99 (135)
.|+=||+|...++.++..+..+++ ++++|..
T Consensus 23 DVvIVGgGpAGL~aA~~la~~G~~-V~vlEk~ 53 (254)
T TIGR00292 23 DVIIVGAGPSGLTAAYYLAKNGLK-VCVLERS 53 (254)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCc-EEEEecC
Confidence 578899998887777766666788 9999873
No 485
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=30.74 E-value=60 Score=24.75 Aligned_cols=12 Identities=17% Similarity=0.302 Sum_probs=9.2
Q ss_pred CCCHHHHHHHHH
Q 032721 75 SAGDCLRMILQK 86 (135)
Q Consensus 75 G~G~~~~~l~~~ 86 (135)
|||.++..++++
T Consensus 160 GTGrFLE~~A~~ 171 (293)
T TIGR03192 160 GTGRGMEVISDL 171 (293)
T ss_pred cccHHHHHHHHH
Confidence 888888777664
No 486
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=30.68 E-value=68 Score=24.70 Aligned_cols=31 Identities=13% Similarity=0.096 Sum_probs=24.1
Q ss_pred ceEEeecCCCCHH--HHHHHHHCCCCCeeEEeec
Q 032721 67 KRLVDVGGSAGDC--LRMILQKHPFICEGINFDL 98 (135)
Q Consensus 67 ~~vvDvGgG~G~~--~~~l~~~~p~l~~~~~~D~ 98 (135)
++||=||||.+.+ +..+.+..|+.+ +++++.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~-Itvi~~ 35 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIP-ITLITA 35 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCC-EEEEeC
Confidence 3688899999864 456777788888 999875
No 487
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=30.67 E-value=64 Score=27.14 Aligned_cols=31 Identities=13% Similarity=-0.023 Sum_probs=26.0
Q ss_pred ceEEeecCCCCHHHHHHHHHC-CCCCeeEEeec
Q 032721 67 KRLVDVGGSAGDCLRMILQKH-PFICEGINFDL 98 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~-p~l~~~~~~D~ 98 (135)
..|+=||||...++.++.-+. ++++ ++++|.
T Consensus 33 ~dVlIVGAGPaGL~lA~~Lar~~Gi~-v~IiE~ 64 (634)
T PRK08294 33 VDVLIVGCGPAGLTLAAQLSAFPDIT-TRIVER 64 (634)
T ss_pred CCEEEECCCHHHHHHHHHHhcCCCCc-EEEEEc
Confidence 468999999998888777766 6899 999996
No 488
>PRK13748 putative mercuric reductase; Provisional
Probab=30.61 E-value=59 Score=26.53 Aligned_cols=30 Identities=3% Similarity=-0.077 Sum_probs=24.6
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
.|+=||+|+|.+..++....-.++ +.++|.
T Consensus 100 DvvVIG~GpaG~~aA~~~~~~G~~-v~lie~ 129 (561)
T PRK13748 100 HVAVIGSGGAAMAAALKAVEQGAR-VTLIER 129 (561)
T ss_pred CEEEECcCHHHHHHHHHHHhCCCe-EEEEec
Confidence 588899999988887777666778 999985
No 489
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=30.60 E-value=68 Score=25.63 Aligned_cols=44 Identities=23% Similarity=0.343 Sum_probs=26.6
Q ss_pred HHhccccccHHHHhccCCCCCCcceEEeecCCCCH-HHHHHHHHCC
Q 032721 44 AMSGVSVPFMTSVLDGYDGFKGVKRLVDVGGSAGD-CLRMILQKHP 88 (135)
Q Consensus 44 ~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGgG~G~-~~~~l~~~~p 88 (135)
+|..++......+.+.++ -.+..=|+-+||+.|. ++....+..|
T Consensus 73 ai~~M~~ga~~~v~~l~~-~g~i~Gvi~~GGs~GT~lat~aMr~LP 117 (403)
T PF06792_consen 73 AIEAMARGAARFVSDLYD-EGKIDGVIGIGGSGGTALATAAMRALP 117 (403)
T ss_pred HHHHHHHHHHHHHHHHHh-cCCccEEEEecCCccHHHHHHHHHhCC
Confidence 344433333333444454 4556789999999996 5556666665
No 490
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=30.53 E-value=66 Score=22.87 Aligned_cols=48 Identities=15% Similarity=-0.056 Sum_probs=27.5
Q ss_pred ecCCCCHHHHHHHHHCC--CCCeeEEeec-hHHHHhCCC--CCCcEEEecCCCC
Q 032721 72 VGGSAGDCLRMILQKHP--FICEGINFDL-PEVVAEAPS--IPGVTHIGGDMFK 120 (135)
Q Consensus 72 vGgG~G~~~~~l~~~~p--~l~~~~~~D~-p~~~~~a~~--~~rv~~~~gd~~~ 120 (135)
|=||+|.++.++++... +.+ +++++. ++.++.... ..++.++.+|+.+
T Consensus 5 ItGasg~iG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~ 57 (248)
T PRK10538 5 VTGATAGFGECITRRFIQQGHK-VIATGRRQERLQELKDELGDNLYIAQLDVRN 57 (248)
T ss_pred EECCCchHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhccceEEEEecCCC
Confidence 34566666666665543 345 888887 443332211 2467777888754
No 491
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=30.33 E-value=62 Score=23.81 Aligned_cols=13 Identities=23% Similarity=0.573 Sum_probs=10.8
Q ss_pred CcceEEeecCCCC
Q 032721 65 GVKRLVDVGGSAG 77 (135)
Q Consensus 65 ~~~~vvDvGgG~G 77 (135)
....++|||+++.
T Consensus 36 ~GAdiIDvG~~st 48 (258)
T cd00423 36 EGADIIDIGGEST 48 (258)
T ss_pred CCCCEEEECCCcC
Confidence 4478999999887
No 492
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=30.26 E-value=31 Score=13.82 Aligned_cols=12 Identities=17% Similarity=0.064 Sum_probs=8.6
Q ss_pred hhhHHHHhhCCC
Q 032721 4 WPLVHEAVLDPT 15 (135)
Q Consensus 4 w~~L~~~vr~g~ 15 (135)
+..|.|++++|+
T Consensus 3 mdsllealqtg~ 14 (15)
T PF06345_consen 3 MDSLLEALQTGS 14 (15)
T ss_dssp HHHHHHHHHHST
T ss_pred HHHHHHHHHccC
Confidence 346778888875
No 493
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=30.24 E-value=66 Score=25.93 Aligned_cols=32 Identities=9% Similarity=0.064 Sum_probs=25.8
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
..+|+=||+|...++.+......+++ ++++|.
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~-v~vfE~ 41 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHT-VVVFER 41 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCe-EEEEec
Confidence 47899999999887777665556778 999996
No 494
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=30.18 E-value=75 Score=25.10 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=28.1
Q ss_pred hccCCCCCCcceEEeecCCCCHHHHHHHHHCCCCCeeEEeec-hHH
Q 032721 57 LDGYDGFKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDL-PEV 101 (135)
Q Consensus 57 ~~~~~~~~~~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~-p~~ 101 (135)
.+.++ ..+..+||-|.+ .|.-+..++.+.|. + ++.+|+ |.-
T Consensus 28 ~~aL~-i~~~d~vl~ItS-aG~N~L~yL~~~P~-~-I~aVDlNp~Q 69 (380)
T PF11899_consen 28 MEALN-IGPDDRVLTITS-AGCNALDYLLAGPK-R-IHAVDLNPAQ 69 (380)
T ss_pred HHHhC-CCCCCeEEEEcc-CCchHHHHHhcCCc-e-EEEEeCCHHH
Confidence 34455 666678998885 55555556777775 5 999999 643
No 495
>PRK10262 thioredoxin reductase; Provisional
Probab=29.96 E-value=69 Score=23.96 Aligned_cols=31 Identities=6% Similarity=0.110 Sum_probs=21.2
Q ss_pred cceEEeecCCCCHHHHHHHHHCCCCCeeEEee
Q 032721 66 VKRLVDVGGSAGDCLRMILQKHPFICEGINFD 97 (135)
Q Consensus 66 ~~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D 97 (135)
...|+=||||.+.+..++....-+.+ ++++|
T Consensus 6 ~~~vvIIGgGpaGl~aA~~l~~~g~~-~~~ie 36 (321)
T PRK10262 6 HSKLLILGSGPAGYTAAVYAARANLQ-PVLIT 36 (321)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCC-eEEEE
Confidence 45788899998877776644333556 66665
No 496
>PRK14727 putative mercuric reductase; Provisional
Probab=29.93 E-value=64 Score=25.93 Aligned_cols=31 Identities=6% Similarity=-0.104 Sum_probs=25.3
Q ss_pred ceEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 67 KRLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
..++-||+|+|.+..+...+.-..+ ++++|.
T Consensus 17 ~dvvvIG~G~aG~~~a~~~~~~g~~-v~~ie~ 47 (479)
T PRK14727 17 LHVAIIGSGSAAFAAAIKAAEHGAR-VTIIEG 47 (479)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCe-EEEEEc
Confidence 4688899999988887777766777 888885
No 497
>PTZ00052 thioredoxin reductase; Provisional
Probab=29.91 E-value=63 Score=26.23 Aligned_cols=30 Identities=23% Similarity=0.140 Sum_probs=24.9
Q ss_pred eEEeecCCCCHHHHHHHHHCCCCCeeEEeec
Q 032721 68 RLVDVGGSAGDCLRMILQKHPFICEGINFDL 98 (135)
Q Consensus 68 ~vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~ 98 (135)
-|+=||+|+|.+..++....-+.+ ++++|.
T Consensus 7 DviVIG~GpaG~~AA~~aa~~G~~-V~lie~ 36 (499)
T PTZ00052 7 DLVVIGGGSGGMAAAKEAAAHGKK-VALFDY 36 (499)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCe-EEEEec
Confidence 477899999988888877777888 999993
No 498
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=29.86 E-value=45 Score=25.11 Aligned_cols=12 Identities=33% Similarity=0.722 Sum_probs=9.8
Q ss_pred ceEEeecCCCCH
Q 032721 67 KRLVDVGGSAGD 78 (135)
Q Consensus 67 ~~vvDvGgG~G~ 78 (135)
..++|||||+=.
T Consensus 127 ~~v~DiGGGSte 138 (300)
T TIGR03706 127 GLVVDIGGGSTE 138 (300)
T ss_pred cEEEEecCCeEE
Confidence 599999999743
No 499
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=29.73 E-value=63 Score=26.01 Aligned_cols=30 Identities=7% Similarity=-0.043 Sum_probs=24.4
Q ss_pred EEeecCCCCHHHHHHHHHCCCCCeeEEeech
Q 032721 69 LVDVGGSAGDCLRMILQKHPFICEGINFDLP 99 (135)
Q Consensus 69 vvDvGgG~G~~~~~l~~~~p~l~~~~~~D~p 99 (135)
|+=||+|.|.++.+...+....+ +++++..
T Consensus 3 vvViGaG~~Gl~aA~~La~~G~~-V~vlE~~ 32 (493)
T TIGR02730 3 AIVIGSGIGGLVTATQLAVKGAK-VLVLERY 32 (493)
T ss_pred EEEECCcHHHHHHHHHHHHCCCc-EEEEECC
Confidence 67799999998888877777778 8888763
No 500
>PRK10637 cysG siroheme synthase; Provisional
Probab=29.58 E-value=1.5e+02 Score=23.81 Aligned_cols=60 Identities=15% Similarity=0.071 Sum_probs=36.1
Q ss_pred ceEEeecCCCCHHHH--HHHHHCCCCCeeEEe--ec-hHHHHhCCCCCCcEEEecCCCCC-CCCCcEEEe
Q 032721 67 KRLVDVGGSAGDCLR--MILQKHPFICEGINF--DL-PEVVAEAPSIPGVTHIGGDMFKS-IPAADAIFM 130 (135)
Q Consensus 67 ~~vvDvGgG~G~~~~--~l~~~~p~l~~~~~~--D~-p~~~~~a~~~~rv~~~~gd~~~~-~p~~D~~~l 130 (135)
++||=||||.=..-+ .+++. +.+ ++++ ++ ++..+. ....+++++..+|-.. +..+++++.
T Consensus 13 ~~vlvvGgG~vA~rk~~~ll~~--ga~-v~visp~~~~~~~~l-~~~~~i~~~~~~~~~~dl~~~~lv~~ 78 (457)
T PRK10637 13 RDCLLVGGGDVAERKARLLLDA--GAR-LTVNALAFIPQFTAW-ADAGMLTLVEGPFDESLLDTCWLAIA 78 (457)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCE-EEEEcCCCCHHHHHH-HhCCCEEEEeCCCChHHhCCCEEEEE
Confidence 788889998866543 33343 344 6555 44 343333 2346788888777444 555677664
Done!