BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032724
         (135 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2VC6|A Chain A, Structure Of Mosa From S. Meliloti With Pyruvate Bound
 pdb|2VC6|B Chain B, Structure Of Mosa From S. Meliloti With Pyruvate Bound
          Length = 292

 Score = 27.7 bits (60), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 7/82 (8%)

Query: 2   DGPVGGSRASGGNGMVSNQANDTTTVAADDPKQNLNQVINS---VQKTLGLLHQ-LYLTV 57
           DG   G  A GG+G +S  AN    + AD  +  LN    +   +Q  L  LH+ L+L  
Sbjct: 188 DGTALGYMAHGGHGCISVTANVAPALCADFQQACLNGDFAAALKLQDRLMPLHRALFLET 247

Query: 58  SSFNAASQLPLLQRLNSLVSEL 79
              N A     LQRL  +  +L
Sbjct: 248 ---NPAGAKYALQRLGRMRGDL 266


>pdb|3LB5|A Chain A, Crystal Structure Of Hit-Like Protein Involved In
           Cell-Cycle Regulation From Bartonella Henselae With
           Unknown Ligand
 pdb|3LB5|B Chain B, Crystal Structure Of Hit-Like Protein Involved In
           Cell-Cycle Regulation From Bartonella Henselae With
           Unknown Ligand
 pdb|3LB5|C Chain C, Crystal Structure Of Hit-Like Protein Involved In
           Cell-Cycle Regulation From Bartonella Henselae With
           Unknown Ligand
 pdb|3LB5|D Chain D, Crystal Structure Of Hit-Like Protein Involved In
           Cell-Cycle Regulation From Bartonella Henselae With
           Unknown Ligand
          Length = 161

 Score = 27.3 bits (59), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 34  QNLNQVINSVQKTLGLLHQLY----LTVSSFN-AASQLPLLQRLNSLVSELDNMVKLSEK 88
           + L  VI +VQK    + + +    +TV  FN AASQ  +      ++  ++  ++L+  
Sbjct: 82  ETLFPVIKAVQKIAKAVKKAFQADGITVMQFNEAASQQTVYHLHFHIIPRMEG-IELTPH 140

Query: 89  CNIQVPTEVL 98
            NI  PTE+L
Sbjct: 141 NNIITPTEIL 150


>pdb|2I2O|A Chain A, Crystal Structure Of An Eif4g-Like Protein From Danio
           Rerio
 pdb|2I2O|B Chain B, Crystal Structure Of An Eif4g-Like Protein From Danio
           Rerio
          Length = 224

 Score = 26.9 bits (58), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 30/58 (51%)

Query: 47  LGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDG 104
           + L+H +Y  +     +  L   + ++ LV +L  +    EK N+Q+  E+ NL+ DG
Sbjct: 125 VALVHPVYDCLFRLAQSDALKNEEEVDCLVLQLHRIGDQLEKXNVQLXDELFNLLRDG 182


>pdb|2QY6|A Chain A, Crystal Structure Of The N-Terminal Domain Of Upf0209
           Protein Yfck From Escherichia Coli O157:h7
 pdb|2QY6|B Chain B, Crystal Structure Of The N-Terminal Domain Of Upf0209
           Protein Yfck From Escherichia Coli O157:h7
          Length = 257

 Score = 26.2 bits (56), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 6/46 (13%)

Query: 72  LNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINS 117
           +N L+S+LD+ +      N +V    L+     KNPD +T+++ N+
Sbjct: 159 INELISQLDDSL------NQKVDAWFLDGFAPAKNPDMWTQNLFNA 198


>pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
           Group P21212
 pdb|1ZU5|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
           Group H32
 pdb|1ZU5|B Chain B, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
           Group H32
          Length = 320

 Score = 25.8 bits (55), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 6/50 (12%)

Query: 69  LQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLID--DGKN----PDEFTR 112
           LQ   +L++EL+ M K+ ++     P EVL +ID   G+N     +EF++
Sbjct: 203 LQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSK 252


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.129    0.352 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,725,354
Number of Sequences: 62578
Number of extensions: 126406
Number of successful extensions: 273
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 270
Number of HSP's gapped (non-prelim): 7
length of query: 135
length of database: 14,973,337
effective HSP length: 88
effective length of query: 47
effective length of database: 9,466,473
effective search space: 444924231
effective search space used: 444924231
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 46 (22.3 bits)