BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032726
         (135 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2VJY|A Chain A, Pyruvate Decarboxylase From Kluyveromyces Lactis In
           Complex With The Substrate Analogue Methyl
           Acetylphosphonate
 pdb|2VJY|B Chain B, Pyruvate Decarboxylase From Kluyveromyces Lactis In
           Complex With The Substrate Analogue Methyl
           Acetylphosphonate
 pdb|2VJY|C Chain C, Pyruvate Decarboxylase From Kluyveromyces Lactis In
           Complex With The Substrate Analogue Methyl
           Acetylphosphonate
 pdb|2VJY|D Chain D, Pyruvate Decarboxylase From Kluyveromyces Lactis In
           Complex With The Substrate Analogue Methyl
           Acetylphosphonate
 pdb|2VK4|A Chain A, Crystal Structure Of Pyruvate Decarboxylase From
           Kluyveromyces Lactis
 pdb|2VK4|B Chain B, Crystal Structure Of Pyruvate Decarboxylase From
           Kluyveromyces Lactis
 pdb|2VK4|C Chain C, Crystal Structure Of Pyruvate Decarboxylase From
           Kluyveromyces Lactis
 pdb|2VK4|D Chain D, Crystal Structure Of Pyruvate Decarboxylase From
           Kluyveromyces Lactis
          Length = 563

 Score = 28.5 bits (62), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 16/75 (21%)

Query: 55  EDVSVVVR---KGALYTATNDGWVKYFILHNET-----LVNWKHIDSQSLLG-------- 98
           +++S ++R   K  L+   NDG+    ++H ET     + NW+H++     G        
Sbjct: 452 QEISTMIRWGLKPYLFVLNNDGYTIERLIHGETAQYNCIQNWQHLELLPTFGAKDYEAVR 511

Query: 99  LTTTKEGDVVICDSK 113
           ++TT E + +  D K
Sbjct: 512 VSTTGEWNKLTTDEK 526


>pdb|4HN3|A Chain A, The Crystal Structure Of A Sex Pheromone Precursor
           (Lmo1757) From Listeria Monocytogenes Egd-E
 pdb|4HN3|B Chain B, The Crystal Structure Of A Sex Pheromone Precursor
           (Lmo1757) From Listeria Monocytogenes Egd-E
 pdb|4HN3|C Chain C, The Crystal Structure Of A Sex Pheromone Precursor
           (Lmo1757) From Listeria Monocytogenes Egd-E
 pdb|4HN3|D Chain D, The Crystal Structure Of A Sex Pheromone Precursor
           (Lmo1757) From Listeria Monocytogenes Egd-E
          Length = 350

 Score = 25.8 bits (55), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 55  EDVSVVV---RKGALYTATNDGWVKYFILHNETLVNWKHIDSQSLL 97
           E+V V +   ++GA        ++ Y   + ++L NWK ID ++ +
Sbjct: 193 ENVPVTIAIYKQGARDAVAPGNYIAYATANGDSLSNWKDIDEKNYV 238


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.137    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,240,085
Number of Sequences: 62578
Number of extensions: 107360
Number of successful extensions: 376
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 375
Number of HSP's gapped (non-prelim): 2
length of query: 135
length of database: 14,973,337
effective HSP length: 88
effective length of query: 47
effective length of database: 9,466,473
effective search space: 444924231
effective search space used: 444924231
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)