BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032726
         (135 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O59128|Y1459_PYRHO Uncharacterized sugar kinase PH1459 OS=Pyrococcus horikoshii
           (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
           / OT-3) GN=PH1459 PE=1 SV=1
          Length = 310

 Score = 30.0 bits (66), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 4/102 (3%)

Query: 9   ACLLAFTLQFFFSPPVSSSASLLSTSKESSSMKDLIKLGEGCVSHPEDVSVVVRKGALYT 68
           + L+AF +             ++   +ES  + D++K  E  V + E+  V V KG++ T
Sbjct: 158 SSLIAFDVNLRLDLWRGQEEEMIKVLEESIKLADIVKASEEEVLYLENQGVEV-KGSMLT 216

Query: 69  ATNDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVVIC 110
           A   G     ++ NET+V+   + S ++  L TT  GD  + 
Sbjct: 217 AITLGPKGCRLIKNETVVD---VPSYNVNPLDTTGAGDAFMA 255


>sp|P33149|PDC1_KLUMA Pyruvate decarboxylase OS=Kluyveromyces marxianus GN=PDC1 PE=3 SV=1
          Length = 564

 Score = 29.3 bits (64), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 16/75 (21%)

Query: 55  EDVSVVVRKG---ALYTATNDGWVKYFILHNET-----LVNWKHIDSQSLLG-------- 98
           +++S ++R G    L+   NDG+    ++H ET     + +WKH+D     G        
Sbjct: 452 QEISTMIRWGLKPYLFVLNNDGYTIERLIHGETAQYNCIQSWKHLDLLPTFGAKDYEAVR 511

Query: 99  LTTTKEGDVVICDSK 113
           + TT E + +  D K
Sbjct: 512 VATTGEWNKLTTDKK 526


>sp|Q11VN3|URE1_CYTH3 Urease subunit alpha OS=Cytophaga hutchinsonii (strain ATCC 33406 /
           NCIMB 9469) GN=ureC PE=3 SV=1
          Length = 570

 Score = 29.3 bits (64), Expect = 8.3,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 46  LGEGCVSHPEDVSVVVRKGALYTATNDGW 74
           LG+G  SHPE++   ++ GAL    ++ W
Sbjct: 198 LGKGNTSHPEEIEEQIKAGALGLKLHEDW 226


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.131    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,995,947
Number of Sequences: 539616
Number of extensions: 1585267
Number of successful extensions: 4180
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4177
Number of HSP's gapped (non-prelim): 6
length of query: 135
length of database: 191,569,459
effective HSP length: 100
effective length of query: 35
effective length of database: 137,607,859
effective search space: 4816275065
effective search space used: 4816275065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)