Query 032726
Match_columns 135
No_of_seqs 110 out of 373
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 05:10:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032726.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032726hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1520 Predicted alkaloid syn 99.8 2.8E-18 6.1E-23 147.1 11.5 93 36-129 49-151 (376)
2 PF08450 SGL: SMP-30/Gluconola 98.1 1.3E-05 2.9E-10 62.7 7.5 69 50-121 84-163 (246)
3 PF08450 SGL: SMP-30/Gluconola 98.1 3E-05 6.4E-10 60.8 9.0 74 54-132 2-79 (246)
4 TIGR02604 Piru_Ver_Nterm putat 98.0 6.5E-05 1.4E-09 63.3 10.5 83 43-129 4-112 (367)
5 COG3386 Gluconolactonase [Carb 97.5 0.00067 1.4E-08 57.1 9.1 92 36-134 16-107 (307)
6 TIGR02604 Piru_Ver_Nterm putat 97.4 0.00093 2E-08 56.4 8.3 60 52-113 124-203 (367)
7 COG4257 Vgb Streptogramin lyas 97.3 0.001 2.2E-08 56.8 8.0 87 40-128 50-139 (353)
8 PLN02919 haloacid dehalogenase 97.3 0.0014 3E-08 63.1 9.4 69 51-121 803-887 (1057)
9 COG3386 Gluconolactonase [Carb 97.3 0.0035 7.7E-08 52.8 10.5 87 41-129 152-250 (307)
10 PLN02919 haloacid dehalogenase 97.2 0.0037 8E-08 60.2 11.4 77 51-129 739-841 (1057)
11 PF03088 Str_synth: Strictosid 96.8 0.01 2.2E-07 41.9 7.5 57 56-115 2-79 (89)
12 COG3391 Uncharacterized conser 96.7 0.016 3.5E-07 49.3 9.7 70 46-119 112-186 (381)
13 PF01436 NHL: NHL repeat; Int 96.4 0.0031 6.7E-08 35.2 2.5 24 94-118 3-26 (28)
14 TIGR03300 assembly_YfgL outer 95.9 0.21 4.5E-06 41.4 11.9 60 63-125 65-127 (377)
15 TIGR03606 non_repeat_PQQ dehyd 95.7 0.068 1.5E-06 47.6 8.6 74 38-114 128-250 (454)
16 PF05787 DUF839: Bacterial pro 95.3 0.16 3.4E-06 45.8 9.8 82 44-128 342-474 (524)
17 PF02239 Cytochrom_D1: Cytochr 95.2 0.11 2.4E-06 44.4 8.0 64 54-119 39-104 (369)
18 KOG1520 Predicted alkaloid syn 95.1 0.033 7.2E-07 48.6 4.6 51 40-91 42-93 (376)
19 PF14517 Tachylectin: Tachylec 94.9 0.036 7.9E-07 45.4 4.1 82 36-119 65-155 (229)
20 PRK11028 6-phosphogluconolacto 94.9 0.35 7.5E-06 39.2 9.8 85 37-125 22-115 (330)
21 PF10282 Lactonase: Lactonase, 94.9 0.37 8.1E-06 40.1 10.1 76 53-130 246-333 (345)
22 PF07995 GSDH: Glucose / Sorbo 94.7 0.11 2.4E-06 43.4 6.7 60 52-114 2-73 (331)
23 PRK11028 6-phosphogluconolacto 94.3 1 2.2E-05 36.4 11.3 77 51-129 174-268 (330)
24 COG4257 Vgb Streptogramin lyas 94.2 0.45 9.9E-06 40.9 9.2 47 37-84 89-135 (353)
25 PF13360 PQQ_2: PQQ-like domai 94.2 0.36 7.8E-06 36.6 7.9 65 60-126 33-99 (238)
26 PF07995 GSDH: Glucose / Sorbo 93.9 0.088 1.9E-06 44.1 4.5 52 63-115 270-327 (331)
27 TIGR03866 PQQ_ABC_repeats PQQ- 93.8 0.71 1.5E-05 35.2 9.0 66 54-121 209-278 (300)
28 COG3391 Uncharacterized conser 93.7 0.76 1.6E-05 39.2 9.8 78 46-127 156-245 (381)
29 TIGR03866 PQQ_ABC_repeats PQQ- 93.5 0.6 1.3E-05 35.6 8.1 59 66-125 4-65 (300)
30 COG3211 PhoX Predicted phospha 93.4 0.22 4.9E-06 45.8 6.4 67 43-111 408-517 (616)
31 TIGR03606 non_repeat_PQQ dehyd 93.3 0.39 8.6E-06 42.8 7.7 66 43-111 22-103 (454)
32 KOG4659 Uncharacterized conser 92.8 0.54 1.2E-05 47.3 8.2 75 52-129 407-509 (1899)
33 COG2706 3-carboxymuconate cycl 92.7 1.6 3.5E-05 38.0 10.2 75 53-129 245-331 (346)
34 TIGR02658 TTQ_MADH_Hv methylam 92.0 1.5 3.1E-05 37.9 9.2 67 53-121 249-329 (352)
35 PF01731 Arylesterase: Arylest 91.3 0.9 1.9E-05 31.8 6.0 63 52-118 6-79 (86)
36 PF13449 Phytase-like: Esteras 90.5 1.5 3.3E-05 36.5 7.8 68 56-125 24-123 (326)
37 COG2133 Glucose/sorbosone dehy 90.4 1.4 3E-05 38.9 7.7 58 64-123 332-398 (399)
38 PF10282 Lactonase: Lactonase, 90.2 6.7 0.00014 32.6 11.3 92 36-130 23-127 (345)
39 TIGR02276 beta_rpt_yvtn 40-res 89.9 1.9 4.2E-05 24.4 5.7 39 63-102 3-42 (42)
40 PF14517 Tachylectin: Tachylec 89.8 0.78 1.7E-05 37.7 5.3 89 30-120 107-204 (229)
41 PF13360 PQQ_2: PQQ-like domai 89.8 2.2 4.7E-05 32.3 7.4 62 62-125 172-234 (238)
42 cd00200 WD40 WD40 domain, foun 89.1 3.6 7.8E-05 29.7 7.9 59 56-116 56-116 (289)
43 smart00564 PQQ beta-propeller 89.0 1.1 2.4E-05 24.4 4.1 24 60-83 3-26 (33)
44 cd00200 WD40 WD40 domain, foun 88.5 4.2 9.1E-05 29.4 7.9 64 53-118 221-286 (289)
45 PF01436 NHL: NHL repeat; Int 88.4 1.1 2.3E-05 24.7 3.7 25 52-77 2-27 (28)
46 TIGR03032 conserved hypothetic 88.1 2.3 5E-05 36.8 7.2 61 44-110 196-257 (335)
47 COG1520 FOG: WD40-like repeat 87.4 2.7 5.8E-05 35.1 7.1 62 60-126 65-134 (370)
48 TIGR03300 assembly_YfgL outer 87.0 2.3 5E-05 35.1 6.5 60 63-124 105-166 (377)
49 KOG0266 WD40 repeat-containing 86.8 3.2 7E-05 36.1 7.5 65 54-120 249-315 (456)
50 PRK11138 outer membrane biogen 85.6 4.4 9.6E-05 34.0 7.6 59 63-124 256-315 (394)
51 PF06977 SdiA-regulated: SdiA- 85.6 2.9 6.4E-05 34.3 6.3 59 51-112 170-240 (248)
52 KOG0318 WD40 repeat stress pro 84.9 5.1 0.00011 37.0 7.9 68 60-128 371-440 (603)
53 PRK11138 outer membrane biogen 84.2 2.9 6.4E-05 35.1 5.9 22 63-84 120-141 (394)
54 KOG0296 Angio-associated migra 83.2 7.1 0.00015 34.5 7.9 71 61-131 199-271 (399)
55 PF13570 PQQ_3: PQQ-like domai 83.1 1.8 3.9E-05 25.1 3.0 21 59-80 18-38 (40)
56 PF02333 Phytase: Phytase; In 82.2 3.4 7.3E-05 36.3 5.5 35 43-80 201-236 (381)
57 PF06739 SBBP: Beta-propeller 82.1 1 2.2E-05 26.7 1.7 15 97-111 16-30 (38)
58 COG2706 3-carboxymuconate cycl 81.1 12 0.00026 32.7 8.4 77 51-128 39-127 (346)
59 PTZ00421 coronin; Provisional 81.1 19 0.0004 32.3 10.0 63 55-119 129-194 (493)
60 COG2133 Glucose/sorbosone dehy 80.9 6 0.00013 34.9 6.7 59 54-114 179-260 (399)
61 PF14870 PSII_BNR: Photosynthe 80.0 13 0.00029 31.3 8.3 66 56-123 191-262 (302)
62 PF03022 MRJP: Major royal jel 78.7 9.7 0.00021 31.5 7.0 70 41-113 176-255 (287)
63 smart00284 OLF Olfactomedin-li 78.2 4.3 9.2E-05 33.8 4.7 56 56-112 132-193 (255)
64 TIGR02658 TTQ_MADH_Hv methylam 77.3 15 0.00032 31.8 7.9 39 73-113 27-66 (352)
65 PF14339 DUF4394: Domain of un 77.3 16 0.00034 30.3 7.7 70 55-125 27-107 (236)
66 PF01011 PQQ: PQQ enzyme repea 76.6 7 0.00015 22.5 4.1 21 64-84 1-21 (38)
67 PRK13684 Ycf48-like protein; P 76.3 21 0.00046 29.9 8.4 59 60-119 180-239 (334)
68 cd00216 PQQ_DH Dehydrogenases 75.8 11 0.00024 33.2 6.8 22 63-84 61-82 (488)
69 PRK03629 tolB translocation pr 75.5 34 0.00075 29.4 9.7 72 56-129 291-371 (429)
70 PF13449 Phytase-like: Esteras 74.7 11 0.00024 31.4 6.3 56 53-110 86-164 (326)
71 PTZ00420 coronin; Provisional 74.5 21 0.00046 32.8 8.5 58 55-115 129-189 (568)
72 PLN00033 photosystem II stabil 73.4 22 0.00048 31.1 8.1 64 60-123 246-310 (398)
73 TIGR03075 PQQ_enz_alc_DH PQQ-d 72.7 22 0.00047 32.0 8.0 62 62-125 68-142 (527)
74 KOG4649 PQQ (pyrrolo-quinoline 72.6 17 0.00036 31.4 6.9 67 60-127 101-171 (354)
75 PRK04792 tolB translocation pr 71.7 36 0.00079 29.5 9.0 71 56-128 266-345 (448)
76 KOG0315 G-protein beta subunit 71.7 9.2 0.0002 32.6 5.1 54 60-115 91-147 (311)
77 COG1520 FOG: WD40-like repeat 71.6 21 0.00044 29.8 7.2 23 62-84 110-132 (370)
78 PRK04922 tolB translocation pr 71.6 40 0.00086 28.8 9.1 70 56-127 252-330 (433)
79 PF06977 SdiA-regulated: SdiA- 71.2 5.4 0.00012 32.7 3.6 27 51-78 221-247 (248)
80 KOG0291 WD40-repeat-containing 70.9 12 0.00025 36.1 6.0 71 45-118 342-417 (893)
81 PRK13684 Ycf48-like protein; P 70.6 63 0.0014 27.1 12.3 67 53-121 47-116 (334)
82 PRK03629 tolB translocation pr 70.1 41 0.00088 29.0 8.9 71 56-128 247-326 (429)
83 TIGR02800 propeller_TolB tol-p 67.9 54 0.0012 27.1 8.9 68 60-128 197-273 (417)
84 PRK04922 tolB translocation pr 67.6 49 0.0011 28.3 8.8 71 56-128 296-375 (433)
85 PF03022 MRJP: Major royal jel 67.2 33 0.00072 28.3 7.5 64 65-129 144-227 (287)
86 COG3823 Glutamine cyclotransfe 67.1 16 0.00034 30.6 5.4 47 63-109 185-245 (262)
87 PF07494 Reg_prop: Two compone 66.4 7.6 0.00016 20.6 2.4 16 56-72 9-24 (24)
88 PRK04792 tolB translocation pr 65.7 51 0.0011 28.6 8.7 68 59-127 224-300 (448)
89 KOG2106 Uncharacterized conser 65.4 62 0.0013 30.1 9.3 71 55-127 411-484 (626)
90 PRK05137 tolB translocation pr 64.4 60 0.0013 27.7 8.8 48 59-107 252-303 (435)
91 KOG0318 WD40 repeat stress pro 64.3 18 0.0004 33.5 5.8 38 43-81 312-350 (603)
92 PRK01742 tolB translocation pr 63.6 67 0.0015 27.5 9.0 68 56-128 296-368 (429)
93 KOG4659 Uncharacterized conser 63.4 43 0.00094 34.6 8.5 74 51-129 474-568 (1899)
94 COG4256 HemP Hemin uptake prot 63.2 15 0.00033 24.5 3.8 48 22-69 2-51 (63)
95 KOG4649 PQQ (pyrrolo-quinoline 63.1 9.4 0.0002 32.9 3.5 37 60-96 143-181 (354)
96 KOG0288 WD40 repeat protein Ti 63.1 21 0.00046 32.1 5.8 61 59-127 394-457 (459)
97 KOG1036 Mitotic spindle checkp 62.4 13 0.00027 32.2 4.2 58 55-114 236-296 (323)
98 PRK02889 tolB translocation pr 62.3 88 0.0019 26.8 9.4 71 56-128 288-367 (427)
99 PLN00033 photosystem II stabil 61.9 70 0.0015 28.0 8.9 65 56-123 285-356 (398)
100 PF08553 VID27: VID27 cytoplas 61.8 19 0.00041 34.6 5.7 62 59-120 584-645 (794)
101 PF00400 WD40: WD domain, G-be 61.5 25 0.00054 19.1 4.5 26 52-78 12-38 (39)
102 PF10647 Gmad1: Lipoprotein Lp 60.7 54 0.0012 26.4 7.4 66 52-120 24-92 (253)
103 KOG4499 Ca2+-binding protein R 59.9 21 0.00045 30.4 5.0 52 60-113 116-178 (310)
104 PTZ00421 coronin; Provisional 59.9 53 0.0012 29.4 7.9 61 55-117 79-150 (493)
105 smart00135 LY Low-density lipo 59.5 28 0.00061 19.1 4.8 34 46-80 3-38 (43)
106 KOG1036 Mitotic spindle checkp 59.4 37 0.0008 29.4 6.5 25 56-81 59-83 (323)
107 cd00216 PQQ_DH Dehydrogenases 58.0 31 0.00066 30.4 6.0 50 62-113 405-457 (488)
108 PRK00178 tolB translocation pr 57.9 1.1E+02 0.0025 25.7 10.4 71 56-128 247-326 (430)
109 PF05935 Arylsulfotrans: Aryls 57.9 51 0.0011 29.1 7.4 65 60-126 155-236 (477)
110 PRK01742 tolB translocation pr 57.7 1E+02 0.0022 26.4 9.0 70 56-127 208-286 (429)
111 PRK00178 tolB translocation pr 57.4 82 0.0018 26.6 8.3 67 59-126 205-280 (430)
112 PF15018 InaF-motif: TRP-inter 57.4 12 0.00027 22.7 2.4 21 6-26 18-38 (38)
113 PF11768 DUF3312: Protein of u 56.6 81 0.0018 29.2 8.5 65 52-119 260-325 (545)
114 PF02191 OLF: Olfactomedin-lik 56.1 24 0.00052 28.9 4.7 58 56-114 127-190 (250)
115 KOG0642 Cell-cycle nuclear pro 55.9 41 0.0009 31.2 6.5 69 51-124 343-428 (577)
116 PF07172 GRP: Glycine rich pro 55.3 11 0.00025 26.7 2.4 11 1-11 1-11 (95)
117 KOG0263 Transcription initiati 54.2 29 0.00063 33.0 5.4 66 43-112 569-638 (707)
118 KOG0313 Microtubule binding pr 54.1 42 0.00091 30.0 6.1 72 55-128 264-339 (423)
119 PRK05137 tolB translocation pr 52.9 1.4E+02 0.003 25.5 9.0 51 59-110 296-350 (435)
120 KOG1963 WD40 repeat protein [G 52.9 24 0.00051 34.0 4.7 51 56-108 256-307 (792)
121 PRK02889 tolB translocation pr 52.8 92 0.002 26.7 8.0 49 59-108 202-254 (427)
122 KOG0266 WD40 repeat-containing 52.2 74 0.0016 27.7 7.4 71 48-120 200-273 (456)
123 TIGR03032 conserved hypothetic 52.1 23 0.00051 30.8 4.2 29 103-131 211-241 (335)
124 PF04762 IKI3: IKI3 family; I 51.9 87 0.0019 30.5 8.4 59 63-122 87-150 (928)
125 KOG0278 Serine/threonine kinas 51.4 45 0.00097 28.7 5.7 53 63-116 236-290 (334)
126 PF14870 PSII_BNR: Photosynthe 50.8 72 0.0016 27.0 6.9 59 62-121 154-213 (302)
127 PF02333 Phytase: Phytase; In 50.2 51 0.0011 29.0 6.1 58 63-121 169-236 (381)
128 TIGR02800 propeller_TolB tol-p 50.2 1.5E+02 0.0031 24.5 9.4 62 59-121 284-353 (417)
129 PRK01029 tolB translocation pr 49.5 1.7E+02 0.0038 25.3 10.3 71 56-128 285-366 (428)
130 TIGR03074 PQQ_membr_DH membran 49.4 78 0.0017 30.2 7.5 22 62-83 193-214 (764)
131 PRK01029 tolB translocation pr 49.2 1.7E+02 0.0036 25.4 9.1 71 56-128 331-410 (428)
132 COG4946 Uncharacterized protei 49.1 86 0.0019 29.2 7.4 31 98-128 406-438 (668)
133 PF14269 Arylsulfotran_2: Aryl 49.0 87 0.0019 26.1 7.1 58 68-126 227-293 (299)
134 PRK02888 nitrous-oxide reducta 48.5 70 0.0015 30.2 6.9 70 41-114 312-398 (635)
135 PRK12693 flgG flagellar basal 47.5 73 0.0016 25.8 6.3 44 52-98 90-138 (261)
136 PF08248 Tryp_FSAP: Tryptophyl 44.1 12 0.00025 17.4 0.6 9 19-27 4-12 (12)
137 KOG0296 Angio-associated migra 44.0 1.2E+02 0.0025 27.1 7.2 51 60-111 335-386 (399)
138 KOG4499 Ca2+-binding protein R 43.2 33 0.00072 29.2 3.7 32 52-84 212-244 (310)
139 KOG1274 WD40 repeat protein [G 42.8 1E+02 0.0022 30.3 7.2 62 56-119 101-164 (933)
140 KOG0265 U5 snRNP-specific prot 42.3 98 0.0021 27.0 6.4 65 59-125 54-124 (338)
141 PRK12690 flgF flagellar basal 42.0 1.1E+02 0.0023 25.0 6.4 20 53-73 77-96 (238)
142 KOG2110 Uncharacterized conser 41.8 1.3E+02 0.0027 26.8 7.1 63 52-115 173-240 (391)
143 KOG2106 Uncharacterized conser 41.3 1.6E+02 0.0035 27.5 7.9 76 41-119 318-394 (626)
144 PF05567 Neisseria_PilC: Neiss 41.2 42 0.00092 28.5 4.1 18 65-82 223-240 (335)
145 KOG0275 Conserved WD40 repeat- 40.8 79 0.0017 28.2 5.7 54 66-119 452-505 (508)
146 KOG2114 Vacuolar assembly/sort 40.7 68 0.0015 31.4 5.7 30 49-79 21-51 (933)
147 COG3204 Uncharacterized protei 40.7 29 0.00063 30.0 3.0 30 50-80 282-311 (316)
148 KOG1354 Serine/threonine prote 40.1 30 0.00064 30.8 3.0 25 55-80 29-54 (433)
149 KOG0286 G-protein beta subunit 39.7 1.1E+02 0.0024 26.6 6.4 62 44-113 48-117 (343)
150 KOG0285 Pleiotropic regulator 39.5 77 0.0017 28.5 5.5 65 56-123 365-440 (460)
151 KOG0772 Uncharacterized conser 39.4 1.1E+02 0.0023 28.7 6.5 53 59-112 174-233 (641)
152 KOG0286 G-protein beta subunit 39.0 1.2E+02 0.0026 26.5 6.4 60 61-121 154-218 (343)
153 PRK12640 flgF flagellar basal 38.8 1.9E+02 0.0041 23.6 7.4 67 52-127 75-146 (246)
154 PRK12642 flgF flagellar basal 38.2 1.5E+02 0.0033 24.0 6.7 67 52-126 74-145 (241)
155 TIGR03075 PQQ_enz_alc_DH PQQ-d 37.7 99 0.0021 27.8 6.1 49 60-112 469-522 (527)
156 COG1218 CysQ 3'-Phosphoadenosi 37.4 36 0.00078 28.7 3.1 57 66-122 77-145 (276)
157 PRK12689 flgF flagellar basal 37.4 2E+02 0.0043 23.5 7.3 66 52-126 82-152 (253)
158 PLN00181 protein SPA1-RELATED; 36.1 2.5E+02 0.0055 26.0 8.6 27 56-83 580-608 (793)
159 COG3204 Uncharacterized protei 35.5 1.1E+02 0.0023 26.5 5.6 55 66-122 248-312 (316)
160 KOG2055 WD40 repeat protein [G 35.4 2.6E+02 0.0057 25.7 8.2 62 56-120 349-414 (514)
161 COG4787 FlgF Flagellar basal b 35.3 58 0.0013 27.2 3.9 35 90-125 72-113 (251)
162 KOG0275 Conserved WD40 repeat- 35.1 46 0.00099 29.6 3.4 69 46-116 208-286 (508)
163 KOG0643 Translation initiation 35.1 1.3E+02 0.0029 26.0 6.1 67 42-110 41-110 (327)
164 PRK12691 flgG flagellar basal 34.8 1.7E+02 0.0036 23.8 6.5 23 52-75 90-112 (262)
165 PLN00181 protein SPA1-RELATED; 34.6 2.5E+02 0.0054 26.1 8.3 58 60-118 669-733 (793)
166 smart00108 B_lectin Bulb-type 34.1 1.1E+02 0.0024 21.2 4.8 16 97-112 88-103 (114)
167 KOG1539 WD repeat protein [Gen 33.8 1.4E+02 0.0031 29.2 6.6 53 55-109 580-633 (910)
168 TIGR02608 delta_60_rpt delta-6 33.4 61 0.0013 20.8 3.0 10 116-125 31-40 (55)
169 COG4247 Phy 3-phytase (myo-ino 33.0 91 0.002 27.0 4.8 72 52-126 205-281 (364)
170 KOG0271 Notchless-like WD40 re 32.6 38 0.00082 30.5 2.5 22 62-83 257-278 (480)
171 PRK12694 flgG flagellar basal 32.5 1.9E+02 0.0042 23.5 6.6 44 52-98 90-138 (260)
172 PF03039 IL12: Interleukin-12 31.8 5.3 0.00012 32.7 -2.7 50 1-57 1-69 (219)
173 PF02239 Cytochrom_D1: Cytochr 31.5 2.3E+02 0.005 24.2 7.1 52 70-121 13-65 (369)
174 PRK12816 flgG flagellar basal 31.0 2.3E+02 0.0049 23.3 6.7 47 52-101 90-142 (264)
175 KOG0272 U4/U6 small nuclear ri 30.9 1.6E+02 0.0035 26.7 6.1 62 48-112 300-364 (459)
176 cd00028 B_lectin Bulb-type man 30.9 1.2E+02 0.0027 21.1 4.6 17 97-113 57-73 (116)
177 PF04879 Molybdop_Fe4S4: Molyb 30.9 17 0.00036 22.4 0.0 18 65-82 16-33 (55)
178 KOG0279 G protein beta subunit 30.8 2.2E+02 0.0047 24.7 6.7 70 37-109 49-121 (315)
179 KOG4227 WD40 repeat protein [G 30.8 1.3E+02 0.0028 27.5 5.5 62 56-119 110-175 (609)
180 TIGR02488 flgG_G_neg flagellar 30.5 2.9E+02 0.0062 22.4 7.2 48 52-102 88-141 (259)
181 PRK12636 flgG flagellar basal 30.4 3E+02 0.0064 22.5 7.3 67 52-126 89-160 (263)
182 KOG2111 Uncharacterized conser 29.9 2.6E+02 0.0057 24.5 7.1 60 60-119 189-252 (346)
183 KOG0271 Notchless-like WD40 re 29.1 2.2E+02 0.0047 25.9 6.6 71 60-132 165-254 (480)
184 COG1946 TesB Acyl-CoA thioeste 28.5 87 0.0019 26.7 3.9 24 100-123 265-288 (289)
185 PF01453 B_lectin: D-mannose b 28.0 2.2E+02 0.0048 20.1 5.5 19 97-115 55-73 (114)
186 PRK02888 nitrous-oxide reducta 27.9 2.2E+02 0.0048 26.9 6.8 40 70-110 293-337 (635)
187 COG1021 EntE Peptide arylation 27.8 34 0.00074 31.2 1.4 72 37-114 301-377 (542)
188 PRK04043 tolB translocation pr 27.7 4.1E+02 0.0088 23.1 8.3 46 60-106 195-245 (419)
189 PRK06132 hypothetical protein; 26.6 4.1E+02 0.0089 23.2 7.8 27 51-78 57-83 (359)
190 PF03989 DNA_gyraseA_C: DNA gy 26.5 86 0.0019 18.4 2.7 41 65-108 2-42 (48)
191 COG4942 Membrane-bound metallo 26.4 1.4E+02 0.003 26.8 5.0 38 62-119 329-366 (420)
192 KOG1446 Histone H3 (Lys4) meth 26.2 4.1E+02 0.0088 23.0 7.6 61 56-117 192-256 (311)
193 PRK12643 flgF flagellar basal 25.7 3.4E+02 0.0073 21.8 6.7 65 52-126 75-144 (209)
194 KOG0282 mRNA splicing factor [ 25.4 1.5E+02 0.0034 27.1 5.1 64 55-120 262-328 (503)
195 PF10055 DUF2292: Uncharacteri 25.1 98 0.0021 18.6 2.7 18 63-80 15-32 (38)
196 KOG1240 Protein kinase contain 24.9 85 0.0019 32.1 3.7 25 56-81 1310-1334(1431)
197 KOG1539 WD repeat protein [Gen 24.6 2.9E+02 0.0062 27.3 6.9 63 59-121 455-521 (910)
198 KOG0647 mRNA export protein (c 24.5 1.4E+02 0.0031 26.1 4.5 81 50-132 250-337 (347)
199 cd03752 proteasome_alpha_type_ 24.5 1.4E+02 0.0031 23.1 4.3 28 93-127 125-156 (213)
200 KOG0288 WD40 repeat protein Ti 24.4 33 0.00071 31.0 0.7 72 46-122 173-251 (459)
201 PF05131 Pep3_Vps18: Pep3/Vps1 24.4 3.1E+02 0.0068 20.6 8.2 78 39-121 17-102 (147)
202 KOG1446 Histone H3 (Lys4) meth 24.0 3.6E+02 0.0079 23.3 6.9 24 86-111 135-158 (311)
203 PF07433 DUF1513: Protein of u 23.6 2.5E+02 0.0054 24.1 5.9 51 59-110 57-116 (305)
204 PRK13613 lipoprotein LpqB; Pro 23.5 5.1E+02 0.011 24.1 8.2 72 53-125 364-444 (599)
205 PRK12818 flgG flagellar basal 23.0 3.6E+02 0.0078 22.0 6.5 69 52-126 90-165 (256)
206 COG5226 CEG1 mRNA capping enzy 23.0 1.3E+02 0.0029 26.5 4.1 72 43-121 210-282 (404)
207 KOG0316 Conserved WD40 repeat- 22.6 3.2E+02 0.0068 23.4 6.1 64 52-119 146-209 (307)
208 cd02773 MopB_Res-Cmplx1_Nad11 22.5 1.2E+02 0.0025 25.4 3.7 22 60-81 6-28 (375)
209 COG3168 PilP Tfp pilus assembl 22.5 65 0.0014 25.5 1.9 15 66-80 127-141 (170)
210 PF04351 PilP: Pilus assembly 22.3 64 0.0014 24.2 1.8 28 52-80 89-123 (149)
211 KOG0283 WD40 repeat-containing 22.1 2.6E+02 0.0056 26.9 6.1 56 63-119 422-477 (712)
212 KOG0645 WD40 repeat protein [G 22.1 4E+02 0.0088 23.0 6.7 44 63-106 162-208 (312)
213 KOG3611 Semaphorins [Signal tr 22.1 4.9E+02 0.011 25.0 8.0 55 65-120 427-490 (737)
214 KOG0273 Beta-transducin family 21.9 3.3E+02 0.0073 25.1 6.5 71 56-127 237-312 (524)
215 PF06692 MNSV_P7B: Melon necro 21.9 1.2E+02 0.0027 20.0 2.9 23 4-26 14-37 (61)
216 PF15240 Pro-rich: Proline-ric 21.6 59 0.0013 25.9 1.6 12 5-16 4-15 (179)
217 KOG0299 U3 snoRNP-associated p 21.5 2.3E+02 0.005 25.9 5.4 63 56-120 207-272 (479)
218 PF02879 PGM_PMM_II: Phosphogl 21.4 72 0.0016 21.7 1.9 20 92-112 82-102 (104)
219 KOG0285 Pleiotropic regulator 21.3 1.3E+02 0.0028 27.0 3.8 22 62-83 288-309 (460)
220 PRK12692 flgG flagellar basal 21.2 4.6E+02 0.01 21.4 7.0 23 52-75 90-112 (262)
221 KOG1445 Tumor-specific antigen 20.9 2.1E+02 0.0046 27.8 5.2 25 56-81 725-750 (1012)
222 PF12124 Nsp3_PL2pro: Coronavi 20.7 49 0.0011 21.9 0.8 41 86-126 16-56 (66)
223 KOG0647 mRNA export protein (c 20.6 4E+02 0.0087 23.4 6.5 63 56-120 32-100 (347)
224 PF10731 Anophelin: Thrombin i 20.3 95 0.0021 20.8 2.1 20 1-21 1-20 (65)
225 PTZ00420 coronin; Provisional 20.2 5.6E+02 0.012 23.6 7.8 53 54-108 77-140 (568)
226 KOG2048 WD40 repeat protein [G 20.0 3.7E+02 0.0079 25.8 6.5 27 55-82 73-99 (691)
No 1
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=99.77 E-value=2.8e-18 Score=147.06 Aligned_cols=93 Identities=17% Similarity=0.187 Sum_probs=65.8
Q ss_pred CCcccccceEeccCCcCCCceeeeeeCCCcEEEEecCcEEEEEEcCCC----c-----eeEEeeecCCCCCceeECCCC-
Q 032726 36 ESSSMKDLIKLGEGCVSHPEDVSVVVRKGALYTATNDGWVKYFILHNE----T-----LVNWKHIDSQSLLGLTTTKEG- 105 (135)
Q Consensus 36 ~N~~L~~~e~l~~g~~~GPEdi~avd~~G~lYTg~~dG~I~ri~~~~~----~-----~~~~~~t~GRPpLGl~fd~~G- 105 (135)
+|+.+..+|.+..+...+||.+.+.|.+--+|||..+|||.+....+. . ...-++.|||| |||+|+++|
T Consensus 49 ~~~~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRP-LGl~f~~~gg 127 (376)
T KOG1520|consen 49 PNNHLTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRP-LGIRFDKKGG 127 (376)
T ss_pred cccccCChhhheecccCCCceEEEECCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCc-ceEEeccCCC
Confidence 566677777776665554444413332223888888888888754111 1 22346899999 999999776
Q ss_pred CEEEEeCCCceEEeCCCCeEEEEE
Q 032726 106 DVVICDSKKVRQHTNSQALIIVCV 129 (135)
Q Consensus 106 ~LiVaDa~~GLl~V~~~G~v~vl~ 129 (135)
+|||||||+||++|+++|....+.
T Consensus 128 dL~VaDAYlGL~~V~p~g~~a~~l 151 (376)
T KOG1520|consen 128 DLYVADAYLGLLKVGPEGGLAELL 151 (376)
T ss_pred eEEEEecceeeEEECCCCCcceec
Confidence 999999999999999987765543
No 2
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.10 E-value=1.3e-05 Score=62.73 Aligned_cols=69 Identities=19% Similarity=0.172 Sum_probs=54.0
Q ss_pred CcCCCceeeeeeCCCcEEEEecC---------cEEEEEEcCCCceeEEeeecCCCCCceeECCCCC-EEEEeCCCc-eEE
Q 032726 50 CVSHPEDVSVVVRKGALYTATND---------GWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGD-VVICDSKKV-RQH 118 (135)
Q Consensus 50 ~~~GPEdi~avd~~G~lYTg~~d---------G~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~-LiVaDa~~G-Ll~ 118 (135)
...+|.|+ ++|++|++|.+..+ |+|+|+++ +++.+....--.+| -||+|+++|+ |||+|...+ +++
T Consensus 84 ~~~~~ND~-~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~-~~~~~~~~~~~~~p-NGi~~s~dg~~lyv~ds~~~~i~~ 160 (246)
T PF08450_consen 84 PFNRPNDV-AVDPDGNLYVTDSGGGGASGIDPGSVYRIDP-DGKVTVVADGLGFP-NGIAFSPDGKTLYVADSFNGRIWR 160 (246)
T ss_dssp CTEEEEEE-EE-TTS-EEEEEECCBCTTCGGSEEEEEEET-TSEEEEEEEEESSE-EEEEEETTSSEEEEEETTTTEEEE
T ss_pred ccCCCceE-EEcCCCCEEEEecCCCccccccccceEEECC-CCeEEEEecCcccc-cceEECCcchheeecccccceeEE
Confidence 47899999 79999999999764 88999987 46665555556778 9999999996 899998877 566
Q ss_pred eCC
Q 032726 119 TNS 121 (135)
Q Consensus 119 V~~ 121 (135)
++.
T Consensus 161 ~~~ 163 (246)
T PF08450_consen 161 FDL 163 (246)
T ss_dssp EEE
T ss_pred Eec
Confidence 664
No 3
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.07 E-value=3e-05 Score=60.79 Aligned_cols=74 Identities=15% Similarity=0.114 Sum_probs=56.6
Q ss_pred CceeeeeeC-CCcEEEEe-cCcEEEEEEcCCCceeEEeeecCCCCCceeEC-CCCCEEEEeCCCceEEeCC-CCeEEEEE
Q 032726 54 PEDVSVVVR-KGALYTAT-NDGWVKYFILHNETLVNWKHIDSQSLLGLTTT-KEGDVVICDSKKVRQHTNS-QALIIVCV 129 (135)
Q Consensus 54 PEdi~avd~-~G~lYTg~-~dG~I~ri~~~~~~~~~~~~t~GRPpLGl~fd-~~G~LiVaDa~~GLl~V~~-~G~v~vl~ 129 (135)
||.. +.|+ +|.+|... ..|+|+|+++.++..+. ....+ | .|+.++ ++|+||||+. .|+..+|+ +|++++++
T Consensus 2 ~Egp-~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~-~G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 2 GEGP-VWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-P-NGMAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEE-EEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-E-EEEEEECTTSEEEEEET-TCEEEEETTTTEEEEEE
T ss_pred Ccce-EEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-C-ceEEEEccCCEEEEEEc-CceEEEecCCCcEEEEe
Confidence 7899 6885 88888776 69999999884444443 34444 7 899999 7899999997 55666684 69999887
Q ss_pred EEe
Q 032726 130 CVY 132 (135)
Q Consensus 130 ~~~ 132 (135)
-.+
T Consensus 77 ~~~ 79 (246)
T PF08450_consen 77 DLP 79 (246)
T ss_dssp EEE
T ss_pred ecc
Confidence 664
No 4
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.00 E-value=6.5e-05 Score=63.30 Aligned_cols=83 Identities=16% Similarity=0.125 Sum_probs=60.9
Q ss_pred ceEec-cCCcCCCceeeeeeCCCcEEEEe------------cCc-EEEEEEcCCC--c---eeEEeeecCCCCCceeECC
Q 032726 43 LIKLG-EGCVSHPEDVSVVVRKGALYTAT------------NDG-WVKYFILHNE--T---LVNWKHIDSQSLLGLTTTK 103 (135)
Q Consensus 43 ~e~l~-~g~~~GPEdi~avd~~G~lYTg~------------~dG-~I~ri~~~~~--~---~~~~~~t~GRPpLGl~fd~ 103 (135)
++.+. ++.+.-|..| ++|++|++|.+. +.| ||++++..++ . ++.++..-..| .||++++
T Consensus 4 ~~l~A~~p~~~~P~~i-a~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p-~Gi~~~~ 81 (367)
T TIGR02604 4 VTLFAAEPLLRNPIAV-CFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMV-TGLAVAV 81 (367)
T ss_pred EEEEECCCccCCCcee-eECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCc-cceeEec
Confidence 34444 3468999999 799999999995 345 9999976433 2 45667666788 9999999
Q ss_pred CCCEEEEeCCCceEEe-CCC--C----eEEEEE
Q 032726 104 EGDVVICDSKKVRQHT-NSQ--A----LIIVCV 129 (135)
Q Consensus 104 ~G~LiVaDa~~GLl~V-~~~--G----~v~vl~ 129 (135)
+| |||++..+ |+++ +.+ | +.++|+
T Consensus 82 ~G-lyV~~~~~-i~~~~d~~gdg~ad~~~~~l~ 112 (367)
T TIGR02604 82 GG-VYVATPPD-ILFLRDKDGDDKADGEREVLL 112 (367)
T ss_pred CC-EEEeCCCe-EEEEeCCCCCCCCCCccEEEE
Confidence 99 99998775 7777 433 2 555654
No 5
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.52 E-value=0.00067 Score=57.09 Aligned_cols=92 Identities=14% Similarity=0.141 Sum_probs=72.8
Q ss_pred CCcccccceEeccCCcCCCceeeeeeCCCcEEEEecCcEEEEEEcCCCceeEEeeecCCCCCceeECCCCCEEEEeCCCc
Q 032726 36 ESSSMKDLIKLGEGCVSHPEDVSVVVRKGALYTATNDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVVICDSKKV 115 (135)
Q Consensus 36 ~N~~L~~~e~l~~g~~~GPEdi~avd~~G~lYTg~~dG~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~LiVaDa~~G 115 (135)
+...+.....++||.+..||.- ++ +|+-...++|+|+++.++..+.|..-.+.+ .|..+|+.|+|++|+....
T Consensus 16 ~~~~~~~~~~~gEgP~w~~~~~-~L-----~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~-~~~~~d~~g~Lv~~~~g~~ 88 (307)
T COG3386 16 PVTLLDKGATLGEGPVWDPDRG-AL-----LWVDILGGRIHRLDPETGKKRVFPSPGGFS-SGALIDAGGRLIACEHGVR 88 (307)
T ss_pred ceeEeecccccccCccCcCCCC-EE-----EEEeCCCCeEEEecCCcCceEEEECCCCcc-cceeecCCCeEEEEccccE
Confidence 3455666677777766555544 22 888899999999988677788898888988 9999999999999999999
Q ss_pred eEEeCCCCeEEEEEEEeec
Q 032726 116 RQHTNSQALIIVCVCVYSE 134 (135)
Q Consensus 116 Ll~V~~~G~v~vl~~~~~~ 134 (135)
++..+.++.++.++-.+..
T Consensus 89 ~~~~~~~~~~t~~~~~~~~ 107 (307)
T COG3386 89 LLDPDTGGKITLLAEPEDG 107 (307)
T ss_pred EEeccCCceeEEeccccCC
Confidence 9999666776887766543
No 6
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.38 E-value=0.00093 Score=56.35 Aligned_cols=60 Identities=20% Similarity=0.207 Sum_probs=47.9
Q ss_pred CCCceeeeeeCCCcEEEEecC--------------------cEEEEEEcCCCceeEEeeecCCCCCceeECCCCCEEEEe
Q 032726 52 SHPEDVSVVVRKGALYTATND--------------------GWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVVICD 111 (135)
Q Consensus 52 ~GPEdi~avd~~G~lYTg~~d--------------------G~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~LiVaD 111 (135)
++|-.+ ++++||.||.+.-+ |+|+|++++.+..|.++ ++.|=|.|++||++|+||++|
T Consensus 124 ~~~~~l-~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a-~G~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 124 HSLNSL-AWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVA-HGFQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred ccccCc-eECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEe-cCcCCCccceECCCCCEEEEc
Confidence 558899 79999999985541 78999988555566665 567733999999999999999
Q ss_pred CC
Q 032726 112 SK 113 (135)
Q Consensus 112 a~ 113 (135)
..
T Consensus 202 n~ 203 (367)
T TIGR02604 202 ND 203 (367)
T ss_pred cC
Confidence 84
No 7
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=97.34 E-value=0.001 Score=56.75 Aligned_cols=87 Identities=14% Similarity=0.110 Sum_probs=72.1
Q ss_pred cccceEeccCCcCCCceeeeeeCCC-cEEEEecCcEEEEEEcCCCceeEEe-eecCCCCCceeECCCCCEEEEeCCCceE
Q 032726 40 MKDLIKLGEGCVSHPEDVSVVVRKG-ALYTATNDGWVKYFILHNETLVNWK-HIDSQSLLGLTTTKEGDVVICDSKKVRQ 117 (135)
Q Consensus 40 L~~~e~l~~g~~~GPEdi~avd~~G-~lYTg~~dG~I~ri~~~~~~~~~~~-~t~GRPpLGl~fd~~G~LiVaDa~~GLl 117 (135)
.-+..........+|-|+ +.++|| --||+...|-|=++++..++.+.+. -+|-+| -|+..+++|+.+|||...++.
T Consensus 50 ~~s~~~fpvp~G~ap~dv-apapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~P-hgiv~gpdg~~Witd~~~aI~ 127 (353)
T COG4257 50 DGSSAEFPVPNGSAPFDV-APAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASP-HGIVVGPDGSAWITDTGLAIG 127 (353)
T ss_pred CCccceeccCCCCCcccc-ccCCCCceEEecCccccceecCCCCCceEEEecCCCCCC-ceEEECCCCCeeEecCcceeE
Confidence 455566778888999999 799999 5677777888889988777777654 466777 999999999999999999999
Q ss_pred EeCC-CCeEEEE
Q 032726 118 HTNS-QALIIVC 128 (135)
Q Consensus 118 ~V~~-~G~v~vl 128 (135)
++++ .+.++..
T Consensus 128 R~dpkt~evt~f 139 (353)
T COG4257 128 RLDPKTLEVTRF 139 (353)
T ss_pred EecCcccceEEe
Confidence 9997 6777753
No 8
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.30 E-value=0.0014 Score=63.07 Aligned_cols=69 Identities=17% Similarity=0.325 Sum_probs=52.4
Q ss_pred cCCCceeeeeeCCCcEEEEec-CcEEEEEEcCCCceeEEeeec--------------CCCCCceeECCCCCEEEEeCCCc
Q 032726 51 VSHPEDVSVVVRKGALYTATN-DGWVKYFILHNETLVNWKHID--------------SQSLLGLTTTKEGDVVICDSKKV 115 (135)
Q Consensus 51 ~~GPEdi~avd~~G~lYTg~~-dG~I~ri~~~~~~~~~~~~t~--------------GRPpLGl~fd~~G~LiVaDa~~G 115 (135)
+..|..+ ++|++|.+|.+.. +++|.+|+..++....++.++ .+| -|+++|++|++||+|..-+
T Consensus 803 l~~P~Gv-avd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P-~GIavd~dG~lyVaDt~Nn 880 (1057)
T PLN02919 803 LQHPLGV-LCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEP-AGLALGENGRLFVADTNNS 880 (1057)
T ss_pred ccCCcee-eEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCc-eEEEEeCCCCEEEEECCCC
Confidence 4569999 7999999998865 779999987545444444333 267 9999999999999999877
Q ss_pred eEE-eCC
Q 032726 116 RQH-TNS 121 (135)
Q Consensus 116 Ll~-V~~ 121 (135)
-.+ ++.
T Consensus 881 ~Irvid~ 887 (1057)
T PLN02919 881 LIRYLDL 887 (1057)
T ss_pred EEEEEEC
Confidence 654 454
No 9
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.27 E-value=0.0035 Score=52.76 Aligned_cols=87 Identities=11% Similarity=0.191 Sum_probs=65.6
Q ss_pred ccceEeccCCcCCCceeeeeeCCC-cEEEEecC-cEEEEEEcCC--Cc---eeEEe---eecCCCCCceeECCCCCEEEE
Q 032726 41 KDLIKLGEGCVSHPEDVSVVVRKG-ALYTATND-GWVKYFILHN--ET---LVNWK---HIDSQSLLGLTTTKEGDVVIC 110 (135)
Q Consensus 41 ~~~e~l~~g~~~GPEdi~avd~~G-~lYTg~~d-G~I~ri~~~~--~~---~~~~~---~t~GRPpLGl~fd~~G~LiVa 110 (135)
..++++..+.+..|..+ ++++|| .+|..... ++|+|+..+. +. ...+. .--|+| =|++.|.+|++|+|
T Consensus 152 g~~~~l~~~~~~~~NGl-a~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~P-DG~~vDadG~lw~~ 229 (307)
T COG3386 152 GGVVRLLDDDLTIPNGL-AFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLP-DGMAVDADGNLWVA 229 (307)
T ss_pred CCEEEeecCcEEecCce-EECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCC-CceEEeCCCCEEEe
Confidence 45677777779999999 799999 78888765 9999996631 21 11122 234999 99999999999986
Q ss_pred eCCC--ceEEeCCCCeEEEEE
Q 032726 111 DSKK--VRQHTNSQALIIVCV 129 (135)
Q Consensus 111 Da~~--GLl~V~~~G~v~vl~ 129 (135)
-... ++.+.+|+|+..-.+
T Consensus 230 a~~~g~~v~~~~pdG~l~~~i 250 (307)
T COG3386 230 AVWGGGRVVRFNPDGKLLGEI 250 (307)
T ss_pred cccCCceEEEECCCCcEEEEE
Confidence 6554 799999998776543
No 10
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.23 E-value=0.0037 Score=60.21 Aligned_cols=77 Identities=14% Similarity=0.232 Sum_probs=55.0
Q ss_pred cCCCceeeeeeCCCc-EEEEec-CcEEEEEEcCCCceeEEe-----------e-----------ecCCCCCceeECCCCC
Q 032726 51 VSHPEDVSVVVRKGA-LYTATN-DGWVKYFILHNETLVNWK-----------H-----------IDSQSLLGLTTTKEGD 106 (135)
Q Consensus 51 ~~GPEdi~avd~~G~-lYTg~~-dG~I~ri~~~~~~~~~~~-----------~-----------t~GRPpLGl~fd~~G~ 106 (135)
...|..+ +++++|. +|.... +++|.+|+..++...... . .-.+| .|+++|++|+
T Consensus 739 ~~~P~GI-avspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P-~Gvavd~dG~ 816 (1057)
T PLN02919 739 FAQPSGI-SLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP-LGVLCAKDGQ 816 (1057)
T ss_pred ccCccEE-EEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC-ceeeEeCCCc
Confidence 4689999 7998885 997765 589999986444322111 0 11267 9999999999
Q ss_pred EEEEeCCCceEE-eCC-CCeEEEEE
Q 032726 107 VVICDSKKVRQH-TNS-QALIIVCV 129 (135)
Q Consensus 107 LiVaDa~~GLl~-V~~-~G~v~vl~ 129 (135)
+||+|.+-+-.+ +|+ .|.+++++
T Consensus 817 LYVADs~N~rIrviD~~tg~v~tia 841 (1057)
T PLN02919 817 IYVADSYNHKIKKLDPATKRVTTLA 841 (1057)
T ss_pred EEEEECCCCEEEEEECCCCeEEEEe
Confidence 999999887665 465 46776654
No 11
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=96.76 E-value=0.01 Score=41.93 Aligned_cols=57 Identities=12% Similarity=0.234 Sum_probs=39.1
Q ss_pred eeeeeeCC-CcEEEEec------------------CcEEEEEEcCCCceeEE-eeecCCCCCceeECCCCC-EEEEeCCC
Q 032726 56 DVSVVVRK-GALYTATN------------------DGWVKYFILHNETLVNW-KHIDSQSLLGLTTTKEGD-VVICDSKK 114 (135)
Q Consensus 56 di~avd~~-G~lYTg~~------------------dG~I~ri~~~~~~~~~~-~~t~GRPpLGl~fd~~G~-LiVaDa~~ 114 (135)
|+ .++++ |.+|.... +||++|+++..++.+.+ ...+ -| -|++++++++ |+||...+
T Consensus 2 dl-dv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~-fp-NGVals~d~~~vlv~Et~~ 78 (89)
T PF03088_consen 2 DL-DVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLY-FP-NGVALSPDESFVLVAETGR 78 (89)
T ss_dssp EE-EE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEES-SE-EEEEE-TTSSEEEEEEGGG
T ss_pred ce-eEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCC-cc-CeEEEcCCCCEEEEEeccC
Confidence 67 57877 89998754 89999999966665444 4454 46 9999999997 88888765
Q ss_pred c
Q 032726 115 V 115 (135)
Q Consensus 115 G 115 (135)
.
T Consensus 79 ~ 79 (89)
T PF03088_consen 79 Y 79 (89)
T ss_dssp T
T ss_pred c
Confidence 4
No 12
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.016 Score=49.29 Aligned_cols=70 Identities=16% Similarity=0.236 Sum_probs=54.0
Q ss_pred eccCCcCCCceeeeeeCCC-cEEEEec---CcEEEEEEcCCCceeEEeeecCCCCCceeECCCCC-EEEEeCCCceEEe
Q 032726 46 LGEGCVSHPEDVSVVVRKG-ALYTATN---DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGD-VVICDSKKVRQHT 119 (135)
Q Consensus 46 l~~g~~~GPEdi~avd~~G-~lYTg~~---dG~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~-LiVaDa~~GLl~V 119 (135)
+..| ..|..+ ++|++| .+|.+.. ++.|..++...........++.-| .|++++++|+ +||+|..-+.+.+
T Consensus 112 ~~vG--~~P~~~-~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~v 186 (381)
T COG3391 112 IPVG--LGPVGL-AVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSV 186 (381)
T ss_pred eeec--cCCceE-EECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEE
Confidence 4444 399999 799777 8999998 699999987545544446777678 9999999998 9999955555444
No 13
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=96.44 E-value=0.0031 Score=35.15 Aligned_cols=24 Identities=21% Similarity=0.446 Sum_probs=19.6
Q ss_pred CCCCceeECCCCCEEEEeCCCceEE
Q 032726 94 QSLLGLTTTKEGDVVICDSKKVRQH 118 (135)
Q Consensus 94 RPpLGl~fd~~G~LiVaDa~~GLl~ 118 (135)
+| -|+++|++|++||||....-++
T Consensus 3 ~P-~gvav~~~g~i~VaD~~n~rV~ 26 (28)
T PF01436_consen 3 YP-HGVAVDSDGNIYVADSGNHRVQ 26 (28)
T ss_dssp SE-EEEEEETTSEEEEEECCCTEEE
T ss_pred CC-cEEEEeCCCCEEEEECCCCEEE
Confidence 46 8999999999999997665443
No 14
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.90 E-value=0.21 Score=41.38 Aligned_cols=60 Identities=20% Similarity=0.270 Sum_probs=36.4
Q ss_pred CCcEEEEecCcEEEEEEcCCCceeEEe-eecCCCCC-ceeECCCCCEEEEeCCCceEEeCC-CCeE
Q 032726 63 KGALYTATNDGWVKYFILHNETLVNWK-HIDSQSLL-GLTTTKEGDVVICDSKKVRQHTNS-QALI 125 (135)
Q Consensus 63 ~G~lYTg~~dG~I~ri~~~~~~~~~~~-~t~GRPpL-Gl~fd~~G~LiVaDa~~GLl~V~~-~G~v 125 (135)
+|.+|++..+|.++.++..+|+ +.|. .+.++. . +... .++++||.+..--++.+|. +|++
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~-~~W~~~~~~~~-~~~p~v-~~~~v~v~~~~g~l~ald~~tG~~ 127 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGK-RLWRVDLDERL-SGGVGA-DGGLVFVGTEKGEVIALDAEDGKE 127 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCc-EeeeecCCCCc-ccceEE-cCCEEEEEcCCCEEEEEECCCCcE
Confidence 6799999999999999875554 3332 233322 1 1222 2456666665555666665 4554
No 15
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=95.66 E-value=0.068 Score=47.57 Aligned_cols=74 Identities=16% Similarity=0.235 Sum_probs=50.7
Q ss_pred cccccceEeccCC----cCCCceeeeeeCCCcEEEEecC---------------------------------cEEEEEEc
Q 032726 38 SSMKDLIKLGEGC----VSHPEDVSVVVRKGALYTATND---------------------------------GWVKYFIL 80 (135)
Q Consensus 38 ~~L~~~e~l~~g~----~~GPEdi~avd~~G~lYTg~~d---------------------------------G~I~ri~~ 80 (135)
..+.+.+.|..+. .|.=-.+ +|++||.||.++=| |+|+||++
T Consensus 128 ~~l~~~~~Il~~lP~~~~H~GgrI-~FgPDG~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~ 206 (454)
T TIGR03606 128 QTLEKPVDLLAGLPAGNDHNGGRL-VFGPDGKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNL 206 (454)
T ss_pred CccccceEEEecCCCCCCcCCceE-EECCCCcEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcC
Confidence 3455555555432 2445578 69999999986544 48999987
Q ss_pred CCCc------------eeEEeeecCCCCCceeECCCCCEEEEeCCC
Q 032726 81 HNET------------LVNWKHIDSQSLLGLTTTKEGDVVICDSKK 114 (135)
Q Consensus 81 ~~~~------------~~~~~~t~GRPpLGl~fd~~G~LiVaDa~~ 114 (135)
+++ .|.|+ .|=|=|.||+||++|+||+.|...
T Consensus 207 -DGsiP~dNPf~~g~~~eIyA-~G~RNp~Gla~dp~G~Lw~~e~Gp 250 (454)
T TIGR03606 207 -DGSIPKDNPSINGVVSHIFT-YGHRNPQGLAFTPDGTLYASEQGP 250 (454)
T ss_pred -CCCCCCCCCccCCCcceEEE-EeccccceeEECCCCCEEEEecCC
Confidence 443 24443 455656999999999999998654
No 16
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=95.33 E-value=0.16 Score=45.82 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=55.0
Q ss_pred eEeccCCcCCCceeeeee-CCCcEEEEe--------------------cCcEEEEEEcCCC-------ceeEEeeecCC-
Q 032726 44 IKLGEGCVSHPEDVSVVV-RKGALYTAT--------------------NDGWVKYFILHNE-------TLVNWKHIDSQ- 94 (135)
Q Consensus 44 e~l~~g~~~GPEdi~avd-~~G~lYTg~--------------------~dG~I~ri~~~~~-------~~~~~~~t~GR- 94 (135)
..++-=...-||++ .++ .+|.+|..+ ..|.|+|+.+... .++.+ ..||.
T Consensus 342 ~~~GAT~f~RpEgi-~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~-~~~g~~ 419 (524)
T PF05787_consen 342 DAVGATPFDRPEGI-TVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELF-LVGGDP 419 (524)
T ss_pred ccCccccccCccCe-eEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEE-EEecCc
Confidence 33444467899999 688 468999875 3468999987443 24433 34554
Q ss_pred ------------------CCCceeECCCCCEEEEeCCCc----eEEeCCCCeEEEE
Q 032726 95 ------------------SLLGLTTTKEGDVVICDSKKV----RQHTNSQALIIVC 128 (135)
Q Consensus 95 ------------------PpLGl~fd~~G~LiVaDa~~G----Ll~V~~~G~v~vl 128 (135)
| =+|.||++|+|+||.-.-+ |.-+.++|.+..+
T Consensus 420 ~~~~~~~~~~~~~~~f~sP-DNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~ 474 (524)
T PF05787_consen 420 TDASGNGSNKCDDNGFASP-DNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDF 474 (524)
T ss_pred ccccccccCcccCCCcCCC-CceEECCCCCEEEEeCCCCCCcccccccccCceeee
Confidence 4 6899999999999854443 4455666765544
No 17
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=95.17 E-value=0.11 Score=44.39 Aligned_cols=64 Identities=19% Similarity=0.282 Sum_probs=43.6
Q ss_pred CceeeeeeCCCc-EEEEecCcEEEEEEcCCCceeEEeeecCCCCCceeECCCCC-EEEEeCCCceEEe
Q 032726 54 PEDVSVVVRKGA-LYTATNDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGD-VVICDSKKVRQHT 119 (135)
Q Consensus 54 PEdi~avd~~G~-lYTg~~dG~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~-LiVaDa~~GLl~V 119 (135)
+-++ ++.+||+ +|....||+|-.|+..+.+...-..+|..| .|++++++|+ ++|+.-.-+-+.|
T Consensus 39 h~~~-~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~-~~i~~s~DG~~~~v~n~~~~~v~v 104 (369)
T PF02239_consen 39 HAGL-KFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNP-RGIAVSPDGKYVYVANYEPGTVSV 104 (369)
T ss_dssp EEEE-E-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEE-EEEEE--TTTEEEEEEEETTEEEE
T ss_pred eeEE-EecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCc-ceEEEcCCCCEEEEEecCCCceeE
Confidence 3445 5778885 999999999999988666554446889988 9999999997 5556544555544
No 18
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=95.09 E-value=0.033 Score=48.64 Aligned_cols=51 Identities=16% Similarity=0.216 Sum_probs=41.9
Q ss_pred cccceEeccCCcCCCceeeeeeCCC-cEEEEecCcEEEEEEcCCCceeEEeee
Q 032726 40 MKDLIKLGEGCVSHPEDVSVVVRKG-ALYTATNDGWVKYFILHNETLVNWKHI 91 (135)
Q Consensus 40 L~~~e~l~~g~~~GPEdi~avd~~G-~lYTg~~dG~I~ri~~~~~~~~~~~~t 91 (135)
....+.+......|||++ ++|..| ..|+|.+||+|++|.....+|..++.+
T Consensus 42 ~~~~~l~~~~~~~g~E~~-~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~~~~~ 93 (376)
T KOG1520|consen 42 PLLGKLIPNNHLTGPESL-LFDPQGGGPYTGVVDGRILKYTGNDDGWVKFADT 93 (376)
T ss_pred CcccccccccccCChhhh-eecccCCCceEEEECCceEEEeccCceEEEEEec
Confidence 345666788779999999 799665 799999999999998866777777665
No 19
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=94.91 E-value=0.036 Score=45.42 Aligned_cols=82 Identities=15% Similarity=0.140 Sum_probs=43.9
Q ss_pred CCcccccceEeccCCcCCCceeeeeeCCCcEEEEecCcEEEEEEcCCCceeEEeeecCCCCCc---------eeECCCCC
Q 032726 36 ESSSMKDLIKLGEGCVSHPEDVSVVVRKGALYTATNDGWVKYFILHNETLVNWKHIDSQSLLG---------LTTTKEGD 106 (135)
Q Consensus 36 ~N~~L~~~e~l~~g~~~GPEdi~avd~~G~lYTg~~dG~I~ri~~~~~~~~~~~~t~GRPpLG---------l~fd~~G~ 106 (135)
.|+-+...++|+.+.-..=.+| ++|++|.||+-..||.++|........++|..-.|+. +| +-|+++|-
T Consensus 65 ~~~~~~~~~~Ig~g~W~~F~~i-~~d~~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~-iG~~GW~~f~~vfa~~~Gv 142 (229)
T PF14517_consen 65 GNTWDSGSKQIGDGGWNSFKFI-FFDPTGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKK-IGGTGWNDFDAVFAGPNGV 142 (229)
T ss_dssp T--HHHH-EEEE-S-GGG-SEE-EE-TTS-EEEEETT-EEEEES---STT--HHH-HSEE-EE-SSGGGEEEEEE-TTS-
T ss_pred cccccccCcccccCcccceeEE-EecCCccEEEeccccceeeccCCCccCcchhhcccee-cccCCCccceEEEeCCCcc
Confidence 4566688899999933223389 7999999999999999999866554555554322332 22 34678888
Q ss_pred EEEEeCCCceEEe
Q 032726 107 VVICDSKKVRQHT 119 (135)
Q Consensus 107 LiVaDa~~GLl~V 119 (135)
||+.++..=+.+-
T Consensus 143 LY~i~~dg~~~~~ 155 (229)
T PF14517_consen 143 LYAITPDGRLYRR 155 (229)
T ss_dssp EEEEETTE-EEEE
T ss_pred EEEEcCCCceEEe
Confidence 8887744324444
No 20
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=94.89 E-value=0.35 Score=39.22 Aligned_cols=85 Identities=9% Similarity=0.104 Sum_probs=52.9
Q ss_pred CcccccceEeccCCcCCCceeeeeeCCCc-EEEEe-cCcEEEEEEcC-CCceeEE--eeecCCCCCceeECCCCC-EEEE
Q 032726 37 SSSMKDLIKLGEGCVSHPEDVSVVVRKGA-LYTAT-NDGWVKYFILH-NETLVNW--KHIDSQSLLGLTTTKEGD-VVIC 110 (135)
Q Consensus 37 N~~L~~~e~l~~g~~~GPEdi~avd~~G~-lYTg~-~dG~I~ri~~~-~~~~~~~--~~t~GRPpLGl~fd~~G~-LiVa 110 (135)
|..|...+.+..+ .+|..+ +++++|+ +|.+. .++.|.-++.+ ++..+.. ....|.| -++.|+++|+ ||++
T Consensus 22 ~g~l~~~~~~~~~--~~~~~l-~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p-~~i~~~~~g~~l~v~ 97 (330)
T PRK11028 22 EGALTLLQVVDVP--GQVQPM-VISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSP-THISTDHQGRFLFSA 97 (330)
T ss_pred CCceeeeeEEecC--CCCccE-EECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCc-eEEEECCCCCEEEEE
Confidence 3455555666543 579999 7998885 88875 47888544432 3433322 2356788 9999999997 6776
Q ss_pred eCCCceE---EeCCCCeE
Q 032726 111 DSKKVRQ---HTNSQALI 125 (135)
Q Consensus 111 Da~~GLl---~V~~~G~v 125 (135)
.-..|-+ .++.+|.+
T Consensus 98 ~~~~~~v~v~~~~~~g~~ 115 (330)
T PRK11028 98 SYNANCVSVSPLDKDGIP 115 (330)
T ss_pred EcCCCeEEEEEECCCCCC
Confidence 5444433 23445543
No 21
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=94.86 E-value=0.37 Score=40.07 Aligned_cols=76 Identities=12% Similarity=0.210 Sum_probs=51.2
Q ss_pred CCceeeeeeCCC-cEEEEecCc-EEEEEEc--CCCcee--EEeeecCC-CCCceeECCCCC-EEEEeCCCce---EEeCC
Q 032726 53 HPEDVSVVVRKG-ALYTATNDG-WVKYFIL--HNETLV--NWKHIDSQ-SLLGLTTTKEGD-VVICDSKKVR---QHTNS 121 (135)
Q Consensus 53 GPEdi~avd~~G-~lYTg~~dG-~I~ri~~--~~~~~~--~~~~t~GR-PpLGl~fd~~G~-LiVaDa~~GL---l~V~~ 121 (135)
.|.+| ++++|| .+|.+.... .|.-++. .++..+ ....++|+ | -+|+++++|+ |||+...-+- +++|.
T Consensus 246 ~~~~i-~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~P-r~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 246 APAEI-AISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFP-RHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp SEEEE-EE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSE-EEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred CceeE-EEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCc-cEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 68899 799998 589988654 4444433 334432 34567677 7 9999999997 7778766654 45564
Q ss_pred -CCeEEEEEE
Q 032726 122 -QALIIVCVC 130 (135)
Q Consensus 122 -~G~v~vl~~ 130 (135)
+|.++.+..
T Consensus 324 ~tG~l~~~~~ 333 (345)
T PF10282_consen 324 DTGKLTPVGS 333 (345)
T ss_dssp TTTEEEEEEE
T ss_pred CCCcEEEecc
Confidence 699888775
No 22
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.70 E-value=0.11 Score=43.44 Aligned_cols=60 Identities=15% Similarity=0.239 Sum_probs=42.3
Q ss_pred CCCceeeeeeCCCcEEEEecCcEEEEEEcCCCce-eEEee-------ecCCCCCceeECCC----CCEEEEeCCC
Q 032726 52 SHPEDVSVVVRKGALYTATNDGWVKYFILHNETL-VNWKH-------IDSQSLLGLTTTKE----GDVVICDSKK 114 (135)
Q Consensus 52 ~GPEdi~avd~~G~lYTg~~dG~I~ri~~~~~~~-~~~~~-------t~GRPpLGl~fd~~----G~LiVaDa~~ 114 (135)
.-|=+| ++.+||++|.+.+.|+|++++. ++.. ..+.. -.+.. |||+||++ +.|||+-...
T Consensus 2 ~~P~~~-a~~pdG~l~v~e~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gl-lgia~~p~f~~n~~lYv~~t~~ 73 (331)
T PF07995_consen 2 NNPRSM-AFLPDGRLLVAERSGRIWVVDK-DGSLKTPVADLPEVFADGERGL-LGIAFHPDFASNGYLYVYYTNA 73 (331)
T ss_dssp SSEEEE-EEETTSCEEEEETTTEEEEEET-TTEECEEEEE-TTTBTSTTBSE-EEEEE-TTCCCC-EEEEEEEEE
T ss_pred CCceEE-EEeCCCcEEEEeCCceEEEEeC-CCcCcceecccccccccccCCc-ccceeccccCCCCEEEEEEEcc
Confidence 357789 6999999999999999999984 4443 22211 11334 99999984 8899987754
No 23
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=94.32 E-value=1 Score=36.44 Aligned_cols=77 Identities=13% Similarity=0.206 Sum_probs=48.4
Q ss_pred cCCCceeeeeeCCC-cEEEEec-CcEEEEEEcC--CCceeEEeee--------cC-CCCCceeECCCCC-EEEEeCCCce
Q 032726 51 VSHPEDVSVVVRKG-ALYTATN-DGWVKYFILH--NETLVNWKHI--------DS-QSLLGLTTTKEGD-VVICDSKKVR 116 (135)
Q Consensus 51 ~~GPEdi~avd~~G-~lYTg~~-dG~I~ri~~~--~~~~~~~~~t--------~G-RPpLGl~fd~~G~-LiVaDa~~GL 116 (135)
..||..+ +++++| .+|.... ++.|.-|+.+ ++..+.+..+ ++ .| .+++|+++|+ |||++...+-
T Consensus 174 g~~p~~~-~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~i~~~pdg~~lyv~~~~~~~ 251 (330)
T PRK11028 174 GAGPRHM-VFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWA-ADIHITPDGRHLYACDRTASL 251 (330)
T ss_pred CCCCceE-EECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccc-eeEEECCCCCEEEEecCCCCe
Confidence 3689999 799888 4888887 8988776553 2232322221 12 23 5799999986 8998765443
Q ss_pred E---EeCCCC-eEEEEE
Q 032726 117 Q---HTNSQA-LIIVCV 129 (135)
Q Consensus 117 l---~V~~~G-~v~vl~ 129 (135)
+ .++.++ ..+...
T Consensus 252 I~v~~i~~~~~~~~~~~ 268 (330)
T PRK11028 252 ISVFSVSEDGSVLSFEG 268 (330)
T ss_pred EEEEEEeCCCCeEEEeE
Confidence 3 445554 444433
No 24
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.21 E-value=0.45 Score=40.92 Aligned_cols=47 Identities=11% Similarity=0.101 Sum_probs=36.9
Q ss_pred CcccccceEeccCCcCCCceeeeeeCCCcEEEEecCcEEEEEEcCCCc
Q 032726 37 SSSMKDLIKLGEGCVSHPEDVSVVVRKGALYTATNDGWVKYFILHNET 84 (135)
Q Consensus 37 N~~L~~~e~l~~g~~~GPEdi~avd~~G~lYTg~~dG~I~ri~~~~~~ 84 (135)
|-+--+++...+|...-|-.| ++++||..+.....--|.|+++.+..
T Consensus 89 dP~tGev~~ypLg~Ga~Phgi-v~gpdg~~Witd~~~aI~R~dpkt~e 135 (353)
T COG4257 89 DPATGEVETYPLGSGASPHGI-VVGPDGSAWITDTGLAIGRLDPKTLE 135 (353)
T ss_pred CCCCCceEEEecCCCCCCceE-EECCCCCeeEecCcceeEEecCcccc
Confidence 344567788889988999999 89999998887766689999764433
No 25
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.16 E-value=0.36 Score=36.56 Aligned_cols=65 Identities=17% Similarity=0.206 Sum_probs=47.2
Q ss_pred eeCCCcEEEEecCcEEEEEEcCCCceeEEeeecCCCCCcee-ECCCCCEEEEeCCCceEEeC-CCCeEE
Q 032726 60 VVRKGALYTATNDGWVKYFILHNETLVNWKHIDSQSLLGLT-TTKEGDVVICDSKKVRQHTN-SQALII 126 (135)
Q Consensus 60 vd~~G~lYTg~~dG~I~ri~~~~~~~~~~~~t~GRPpLGl~-fd~~G~LiVaDa~~GLl~V~-~~G~v~ 126 (135)
+..+|.+|++..+|.|+.++..+| ...|......+ .... .-.++.+||+.....|..+| .+|++.
T Consensus 33 ~~~~~~v~~~~~~~~l~~~d~~tG-~~~W~~~~~~~-~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~ 99 (238)
T PF13360_consen 33 VPDGGRVYVASGDGNLYALDAKTG-KVLWRFDLPGP-ISGAPVVDGGRVYVGTSDGSLYALDAKTGKVL 99 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTS-EEEEEEECSSC-GGSGEEEETTEEEEEETTSEEEEEETTTSCEE
T ss_pred EEeCCEEEEEcCCCEEEEEECCCC-CEEEEeecccc-ccceeeecccccccccceeeeEecccCCccee
Confidence 446789999999999999987444 45565555555 4444 44667788888666899999 678774
No 26
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.94 E-value=0.088 Score=44.07 Aligned_cols=52 Identities=13% Similarity=0.286 Sum_probs=34.9
Q ss_pred CCcEEEEec-CcEEEEEEcCCC-c---eeEE-eeecCCCCCceeECCCCCEEEEeCCCc
Q 032726 63 KGALYTATN-DGWVKYFILHNE-T---LVNW-KHIDSQSLLGLTTTKEGDVVICDSKKV 115 (135)
Q Consensus 63 ~G~lYTg~~-dG~I~ri~~~~~-~---~~~~-~~t~GRPpLGl~fd~~G~LiVaDa~~G 115 (135)
+|.++.+.. .++|+++..+.+ . .+.+ ...++|| .+++++++|+|||+|-..|
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~-~~v~~~pDG~Lyv~~d~~G 327 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRP-RDVAQGPDGALYVSDDSDG 327 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-E-EEEEEETTSEEEEEE-TTT
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCc-eEEEEcCCCeEEEEECCCC
Confidence 555666655 679999977433 2 2222 3466698 9999999999999986544
No 27
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=93.85 E-value=0.71 Score=35.21 Aligned_cols=66 Identities=9% Similarity=0.135 Sum_probs=42.0
Q ss_pred CceeeeeeCCCc-EEEEe-cCcEEEEEEcCCCceeEEeeecCCCCCceeECCCCCEE-EEeCCCc-eEEeCC
Q 032726 54 PEDVSVVVRKGA-LYTAT-NDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVV-ICDSKKV-RQHTNS 121 (135)
Q Consensus 54 PEdi~avd~~G~-lYTg~-~dG~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~Li-VaDa~~G-Ll~V~~ 121 (135)
|.++ +++++|+ +|.+. .+++|..|+..++........++.+ .+++|+++|+.+ ++....| +..+|.
T Consensus 209 ~~~i-~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 209 PVGI-KLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRV-WQLAFTPDEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred ccce-EECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCc-ceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 5678 6888886 47654 4668888876444433333445566 999999999754 4455444 444454
No 28
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=93.69 E-value=0.76 Score=39.15 Aligned_cols=78 Identities=15% Similarity=0.292 Sum_probs=56.3
Q ss_pred eccCCcCCCceeeeeeCCCc-EEEEe-cCcEEEEEEcCCCcee-E----EeeecCCCCCceeECCCCC-EEEEeCCC---
Q 032726 46 LGEGCVSHPEDVSVVVRKGA-LYTAT-NDGWVKYFILHNETLV-N----WKHIDSQSLLGLTTTKEGD-VVICDSKK--- 114 (135)
Q Consensus 46 l~~g~~~GPEdi~avd~~G~-lYTg~-~dG~I~ri~~~~~~~~-~----~~~t~GRPpLGl~fd~~G~-LiVaDa~~--- 114 (135)
++.|+ .|+.+ ++|++|. +|... .+++|..++....... . -...+.+| .+++++++|+ +||.+...
T Consensus 156 ~~vG~--~P~~~-a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P-~~i~v~~~g~~~yV~~~~~~~~ 231 (381)
T COG3391 156 IPVGN--TPTGV-AVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGP-AGIAVDPDGNRVYVANDGSGSN 231 (381)
T ss_pred EecCC--CcceE-EECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCC-ceEEECCCCCEEEEEeccCCCc
Confidence 55553 78999 7999997 99888 7888888865222111 1 14567788 9999999997 99999887
Q ss_pred ceEEeCC-CCeEEE
Q 032726 115 VRQHTNS-QALIIV 127 (135)
Q Consensus 115 GLl~V~~-~G~v~v 127 (135)
-+.++|. .+.+..
T Consensus 232 ~v~~id~~~~~v~~ 245 (381)
T COG3391 232 NVLKIDTATGNVTA 245 (381)
T ss_pred eEEEEeCCCceEEE
Confidence 6777774 455544
No 29
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=93.55 E-value=0.6 Score=35.62 Aligned_cols=59 Identities=14% Similarity=0.189 Sum_probs=38.7
Q ss_pred EEEEecCcEEEEEEcCCCceeEEeeecCCCCCceeECCCCC-EEEEeCCCc-eEEeCC-CCeE
Q 032726 66 LYTATNDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGD-VVICDSKKV-RQHTNS-QALI 125 (135)
Q Consensus 66 lYTg~~dG~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~-LiVaDa~~G-Ll~V~~-~G~v 125 (135)
++++..||.|..++..++........+++| -+++|+++|+ +|++....+ +..++. +|++
T Consensus 4 ~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~-~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~ 65 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLEVTRTFPVGQRP-RGITLSKDGKLLYVCASDSDTIQVIDLATGEV 65 (300)
T ss_pred EEEecCCCEEEEEECCCCceEEEEECCCCC-CceEECCCCCEEEEEECCCCeEEEEECCCCcE
Confidence 457788999999987544432222445677 8999999987 567765555 444564 3443
No 30
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=93.44 E-value=0.22 Score=45.84 Aligned_cols=67 Identities=19% Similarity=0.173 Sum_probs=48.6
Q ss_pred ceEeccCCcCCCceeeeee-CCCcEEEEecCc-----------------EEEEEEcCCC-------ceeEEeeec-----
Q 032726 43 LIKLGEGCVSHPEDVSVVV-RKGALYTATNDG-----------------WVKYFILHNE-------TLVNWKHID----- 92 (135)
Q Consensus 43 ~e~l~~g~~~GPEdi~avd-~~G~lYTg~~dG-----------------~I~ri~~~~~-------~~~~~~~t~----- 92 (135)
|.+++--...-||++ ++. ..|.+|....++ .|+||.+.++ .|+.|...+
T Consensus 408 A~~lGAT~mdRpE~i-~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~ 486 (616)
T COG3211 408 ADKLGATPMDRPEWI-AVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVL 486 (616)
T ss_pred HHHhCCccccCccce-eecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcccc
Confidence 455666667899999 677 457899886654 5999988554 466664322
Q ss_pred -------------CCCCCceeECCCCCEEEEe
Q 032726 93 -------------SQSLLGLTTTKEGDVVICD 111 (135)
Q Consensus 93 -------------GRPpLGl~fd~~G~LiVaD 111 (135)
+-| =||.||+.|+|+||-
T Consensus 487 ~~~~~~~~~~~~f~~P-Dnl~fD~~GrLWi~T 517 (616)
T COG3211 487 EGGASANINANWFNSP-DNLAFDPWGRLWIQT 517 (616)
T ss_pred ccccccCcccccccCC-CceEECCCCCEEEEe
Confidence 126 899999999999984
No 31
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=93.32 E-value=0.39 Score=42.80 Aligned_cols=66 Identities=15% Similarity=0.090 Sum_probs=47.5
Q ss_pred ceEeccCCcCCCceeeeeeCCCcEEEEec-CcEEEEEEcCCCceeE------Eee--ecCCCCCceeECCC-------CC
Q 032726 43 LIKLGEGCVSHPEDVSVVVRKGALYTATN-DGWVKYFILHNETLVN------WKH--IDSQSLLGLTTTKE-------GD 106 (135)
Q Consensus 43 ~e~l~~g~~~GPEdi~avd~~G~lYTg~~-dG~I~ri~~~~~~~~~------~~~--t~GRPpLGl~fd~~-------G~ 106 (135)
.+.+..| +..|-++ ++.+||++|..-+ .|+|++++..++..+. ... -.|.+ |||+||++ +.
T Consensus 22 ~~~va~G-L~~Pw~m-aflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GL-lglal~PdF~~~~~n~~ 98 (454)
T TIGR03606 22 KKVLLSG-LNKPWAL-LWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGL-LGLALHPDFMQEKGNPY 98 (454)
T ss_pred EEEEECC-CCCceEE-EEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCce-eeEEECCCccccCCCcE
Confidence 5667776 8899999 6999999999998 5999999763332211 111 13555 99999854 36
Q ss_pred EEEEe
Q 032726 107 VVICD 111 (135)
Q Consensus 107 LiVaD 111 (135)
|||+=
T Consensus 99 lYvsy 103 (454)
T TIGR03606 99 VYISY 103 (454)
T ss_pred EEEEE
Confidence 89984
No 32
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=92.76 E-value=0.54 Score=47.31 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=54.1
Q ss_pred CCCceeeeee-CCCcEEEEec-CcEEEEEEcCCC-----ceeEEe----------eecC-----------CCCCceeECC
Q 032726 52 SHPEDVSVVV-RKGALYTATN-DGWVKYFILHNE-----TLVNWK----------HIDS-----------QSLLGLTTTK 103 (135)
Q Consensus 52 ~GPEdi~avd-~~G~lYTg~~-dG~I~ri~~~~~-----~~~~~~----------~t~G-----------RPpLGl~fd~ 103 (135)
.----+ |+| -+|.||.+.- .-+|||+..-+. .+|..+ .-|| -| =||+||+
T Consensus 407 sh~Yy~-AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~P-kGIa~dk 484 (1899)
T KOG4659|consen 407 SHSYYI-AVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFP-KGIAFDK 484 (1899)
T ss_pred cceeEE-EecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccC-CceeEcc
Confidence 344457 577 4899998854 567999854221 123321 2254 36 8999999
Q ss_pred CCCEEEEeCCCceEEeCCCCeEEEEE
Q 032726 104 EGDVVICDSKKVRQHTNSQALIIVCV 129 (135)
Q Consensus 104 ~G~LiVaDa~~GLl~V~~~G~v~vl~ 129 (135)
+|+||.+|+-+ +=+||.+|-|++|-
T Consensus 485 ~g~lYfaD~t~-IR~iD~~giIstli 509 (1899)
T KOG4659|consen 485 MGNLYFADGTR-IRVIDTTGIISTLI 509 (1899)
T ss_pred CCcEEEecccE-EEEeccCceEEEec
Confidence 99999999998 88999999999873
No 33
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=92.67 E-value=1.6 Score=37.95 Aligned_cols=75 Identities=13% Similarity=0.147 Sum_probs=53.8
Q ss_pred CCceeeeeeCCCc-EEEEecCc---EEEEEEcCCCc--eeEEeeecCC-CCCceeECCCCCEEEEeCCCc----eEEeCC
Q 032726 53 HPEDVSVVVRKGA-LYTATNDG---WVKYFILHNET--LVNWKHIDSQ-SLLGLTTTKEGDVVICDSKKV----RQHTNS 121 (135)
Q Consensus 53 GPEdi~avd~~G~-lYTg~~dG---~I~ri~~~~~~--~~~~~~t~GR-PpLGl~fd~~G~LiVaDa~~G----Ll~V~~ 121 (135)
+--+| .+++||+ +|+....= ++.++++.++. ...+..|+|+ | =++.|+++|+++||-..++ ++++|+
T Consensus 245 ~~aaI-his~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~P-R~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 245 WAAAI-HISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFP-RDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred ceeEE-EECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCC-ccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 34455 4678885 77776533 34567664443 2446789999 7 9999999999998877665 788887
Q ss_pred -CCeEEEEE
Q 032726 122 -QALIIVCV 129 (135)
Q Consensus 122 -~G~v~vl~ 129 (135)
.|+++.+.
T Consensus 323 ~TG~L~~~~ 331 (346)
T COG2706 323 ETGRLTLLG 331 (346)
T ss_pred CCceEEecc
Confidence 59998774
No 34
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=91.96 E-value=1.5 Score=37.94 Aligned_cols=67 Identities=4% Similarity=0.019 Sum_probs=45.3
Q ss_pred CCceeeeeeCCC-cEEEEecC----------cEEEEEEcCCCceeEEeeecCCCCCceeECCCCC--EEEEeCCCc-eEE
Q 032726 53 HPEDVSVVVRKG-ALYTATND----------GWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGD--VVICDSKKV-RQH 118 (135)
Q Consensus 53 GPEdi~avd~~G-~lYTg~~d----------G~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~--LiVaDa~~G-Ll~ 118 (135)
|.|-+ ++.++| ++|...+. .+|+-++...........++.|| .||+|+++|+ ||+++..-| +..
T Consensus 249 g~q~i-a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~-~~iavS~Dgkp~lyvtn~~s~~VsV 326 (352)
T TIGR02658 249 GWQQV-AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEI-DSINVSQDAKPLLYALSTGDKTLYI 326 (352)
T ss_pred cceeE-EEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCce-eeEEECCCCCeEEEEeCCCCCcEEE
Confidence 33448 688665 79985432 47888877544444445677777 9999999987 566665556 666
Q ss_pred eCC
Q 032726 119 TNS 121 (135)
Q Consensus 119 V~~ 121 (135)
+|.
T Consensus 327 iD~ 329 (352)
T TIGR02658 327 FDA 329 (352)
T ss_pred EEC
Confidence 664
No 35
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=91.35 E-value=0.9 Score=31.79 Aligned_cols=63 Identities=16% Similarity=0.097 Sum_probs=42.9
Q ss_pred CCCceeeeeeCCC----------cEEEEecCcEEEEEEcCCCceeEEeeecCCCCCceeECCCC-CEEEEeCCCceEE
Q 032726 52 SHPEDVSVVVRKG----------ALYTATNDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKEG-DVVICDSKKVRQH 118 (135)
Q Consensus 52 ~GPEdi~avd~~G----------~lYTg~~dG~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G-~LiVaDa~~GLl~ 118 (135)
.|||++ .+..|+ ..|++...|.|+.+++ +++...+.-=.-| -||.+++++ .|||++...+-+.
T Consensus 6 vG~~sF-y~TNDhyf~~~~l~~lE~~l~~~~~~Vvyyd~--~~~~~va~g~~~a-NGI~~s~~~k~lyVa~~~~~~I~ 79 (86)
T PF01731_consen 6 VGPDSF-YVTNDHYFTDPFLRLLETYLGLPWGNVVYYDG--KEVKVVASGFSFA-NGIAISPDKKYLYVASSLAHSIH 79 (86)
T ss_pred ECcCcE-EEECchhhCcHHHHHHHHHhcCCCceEEEEeC--CEeEEeeccCCCC-ceEEEcCCCCEEEEEeccCCeEE
Confidence 589999 576543 2577888999999965 2233222211446 899999876 4899998766544
No 36
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.55 E-value=1.5 Score=36.51 Aligned_cols=68 Identities=13% Similarity=0.240 Sum_probs=49.5
Q ss_pred eeeeee-CCCcEEEEecCcE------EEEEEcCC--C---ce-----eEEeeecCCCCC--------ceeECCCCCEEEE
Q 032726 56 DVSVVV-RKGALYTATNDGW------VKYFILHN--E---TL-----VNWKHIDSQSLL--------GLTTTKEGDVVIC 110 (135)
Q Consensus 56 di~avd-~~G~lYTg~~dG~------I~ri~~~~--~---~~-----~~~~~t~GRPpL--------Gl~fd~~G~LiVa 110 (135)
.+ ..+ .+|++|+-+.+|. ++++.... + .. ..+....|+| + ||+++++|.+||.
T Consensus 24 gl-~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~-~~~~~~D~Egi~~~~~g~~~is 101 (326)
T PF13449_consen 24 GL-DYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQP-FPKNGLDPEGIAVPPDGSFWIS 101 (326)
T ss_pred eE-EEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCc-CCcCCCChhHeEEecCCCEEEE
Confidence 56 466 5678888888888 77654321 1 11 1234556998 8 9999999999999
Q ss_pred eCCC-------ceEEeCCCCeE
Q 032726 111 DSKK-------VRQHTNSQALI 125 (135)
Q Consensus 111 Da~~-------GLl~V~~~G~v 125 (135)
+-+. -+++++.+|++
T Consensus 102 ~E~~~~~~~~p~I~~~~~~G~~ 123 (326)
T PF13449_consen 102 SEGGRTGGIPPRIRRFDLDGRV 123 (326)
T ss_pred eCCccCCCCCCEEEEECCCCcc
Confidence 9887 78899988877
No 37
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=90.44 E-value=1.4 Score=38.89 Aligned_cols=58 Identities=10% Similarity=0.306 Sum_probs=43.3
Q ss_pred CcEEEEecCcE-EEEEEcCCCc----eeEEee--ecCCCCCceeECCCCCEEEEeCC-C-ceEEeCCCC
Q 032726 64 GALYTATNDGW-VKYFILHNET----LVNWKH--IDSQSLLGLTTTKEGDVVICDSK-K-VRQHTNSQA 123 (135)
Q Consensus 64 G~lYTg~~dG~-I~ri~~~~~~----~~~~~~--t~GRPpLGl~fd~~G~LiVaDa~-~-GLl~V~~~G 123 (135)
|.++-|.+..| +++..+ ++. .+.+-. .+||| -+++...||.|||.|-. . .|+||..+|
T Consensus 332 ~~lfV~~hgsw~~~~~~~-~g~~~~~~~~fl~~d~~gR~-~dV~v~~DGallv~~D~~~g~i~Rv~~~~ 398 (399)
T COG2133 332 GDLFVGAHGSWPVLRLRP-DGNYKVVLTGFLSGDLGGRP-RDVAVAPDGALLVLTDQGDGRILRVSYAG 398 (399)
T ss_pred CcEEEEeecceeEEEecc-CCCcceEEEEEEecCCCCcc-cceEECCCCeEEEeecCCCCeEEEecCCC
Confidence 57777777777 777765 443 233333 56999 99999999999998887 5 688888765
No 38
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=90.24 E-value=6.7 Score=32.59 Aligned_cols=92 Identities=15% Similarity=0.172 Sum_probs=58.4
Q ss_pred CCcccccceEeccCCcCCCceeeeeeCCC-cEEEEec----CcEEEEEEcC-C-CceeEE--eeecCCCCCceeECCCCC
Q 032726 36 ESSSMKDLIKLGEGCVSHPEDVSVVVRKG-ALYTATN----DGWVKYFILH-N-ETLVNW--KHIDSQSLLGLTTTKEGD 106 (135)
Q Consensus 36 ~N~~L~~~e~l~~g~~~GPEdi~avd~~G-~lYTg~~----dG~I~ri~~~-~-~~~~~~--~~t~GRPpLGl~fd~~G~ 106 (135)
.+..|...+.+.. ...|--+ ++++++ .+|+... +|.|..+... + ++.+.. ..+.|..|.-+++|++|+
T Consensus 23 ~~g~l~~~~~~~~--~~~Ps~l-~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~ 99 (345)
T PF10282_consen 23 ETGTLTLVQTVAE--GENPSWL-AVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGR 99 (345)
T ss_dssp TTTEEEEEEEEEE--SSSECCE-EE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSS
T ss_pred CCCCceEeeeecC--CCCCceE-EEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCC
Confidence 3445665555443 5789999 698665 7999987 5788655432 2 443332 333444449999999986
Q ss_pred -EEEEeCCCc---eEEeCCCCeEEEEEE
Q 032726 107 -VVICDSKKV---RQHTNSQALIIVCVC 130 (135)
Q Consensus 107 -LiVaDa~~G---Ll~V~~~G~v~vl~~ 130 (135)
||||.-.-| ++.++.+|.+....-
T Consensus 100 ~l~vany~~g~v~v~~l~~~g~l~~~~~ 127 (345)
T PF10282_consen 100 FLYVANYGGGSVSVFPLDDDGSLGEVVQ 127 (345)
T ss_dssp EEEEEETTTTEEEEEEECTTSEEEEEEE
T ss_pred EEEEEEccCCeEEEEEccCCcccceeee
Confidence 677754444 456677888877643
No 39
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.87 E-value=1.9 Score=24.44 Aligned_cols=39 Identities=10% Similarity=0.176 Sum_probs=27.8
Q ss_pred CCcEEEEec-CcEEEEEEcCCCceeEEeeecCCCCCceeEC
Q 032726 63 KGALYTATN-DGWVKYFILHNETLVNWKHIDSQSLLGLTTT 102 (135)
Q Consensus 63 ~G~lYTg~~-dG~I~ri~~~~~~~~~~~~t~GRPpLGl~fd 102 (135)
++.+|++.. ++.|..++..++.......++..| -+|.|+
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P-~~i~~~ 42 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYP-FGVAVS 42 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCC-ceEEeC
Confidence 346998875 788888877555554455677778 898875
No 40
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=89.84 E-value=0.78 Score=37.68 Aligned_cols=89 Identities=15% Similarity=0.096 Sum_probs=48.2
Q ss_pred CCCCCCCCccc-ccceEeccCCcCCCceeeeeeCCCcEEEEecCcEEEEEEcCCCceeEE----eeec--C--CCCCcee
Q 032726 30 LLSTSKESSSM-KDLIKLGEGCVSHPEDVSVVVRKGALYTATNDGWVKYFILHNETLVNW----KHID--S--QSLLGLT 100 (135)
Q Consensus 30 ~~p~~~~N~~L-~~~e~l~~g~~~GPEdi~avd~~G~lYTg~~dG~I~ri~~~~~~~~~~----~~t~--G--RPpLGl~ 100 (135)
..|....++=+ +.+++|+.......+.+ ++|++|.||+=..||+++|...+++....| ..+. | .+ --|.
T Consensus 107 ~~~~~~~~~W~~~~~~~iG~~GW~~f~~v-fa~~~GvLY~i~~dg~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~-~~i~ 184 (229)
T PF14517_consen 107 PRPTNGSDNWIGGSGKKIGGTGWNDFDAV-FAGPNGVLYAITPDGRLYRRYRPDGGSDRWLSGSGLVGGGGWDSF-HFIF 184 (229)
T ss_dssp S---STT--HHH-HSEEEE-SSGGGEEEE-EE-TTS-EEEEETTE-EEEE---SSTT--HHHH-EEEESSSGGGE-EEEE
T ss_pred cCCCccCcchhhccceecccCCCccceEE-EeCCCccEEEEcCCCceEEeCCCCCCCCccccccceeccCCcccc-eEEe
Confidence 33333333334 37899977668889999 899999999999999999984434432222 1111 1 13 3567
Q ss_pred ECCCCCEEEEeCCCceEEeC
Q 032726 101 TTKEGDVVICDSKKVRQHTN 120 (135)
Q Consensus 101 fd~~G~LiVaDa~~GLl~V~ 120 (135)
|.++|+|+.+|+.-=|++-.
T Consensus 185 ~~~~g~L~~V~~~G~lyr~~ 204 (229)
T PF14517_consen 185 FSPDGNLWAVKSNGKLYRGR 204 (229)
T ss_dssp E-TTS-EEEE-ETTEEEEES
T ss_pred eCCCCcEEEEecCCEEeccC
Confidence 77899999886554455444
No 41
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=89.76 E-value=2.2 Score=32.25 Aligned_cols=62 Identities=18% Similarity=0.250 Sum_probs=43.6
Q ss_pred CCCcEEEEecCcEEEEEEcCCCceeEEeeecCCCCCceeECCCCCEEEEeCCCceEEeCC-CCeE
Q 032726 62 RKGALYTATNDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVVICDSKKVRQHTNS-QALI 125 (135)
Q Consensus 62 ~~G~lYTg~~dG~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~LiVaDa~~GLl~V~~-~G~v 125 (135)
.+|.+|.+..+|+++.++..+++.. |...-+.+ .++....++.||+++....+..+|. +|++
T Consensus 172 ~~~~v~~~~~~g~~~~~d~~tg~~~-w~~~~~~~-~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 172 SDGRVYVSSGDGRVVAVDLATGEKL-WSKPISGI-YSLPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp CTTEEEEECCTSSEEEEETTTTEEE-EEECSS-E-CECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred ECCEEEEEcCCCeEEEEECCCCCEE-EEecCCCc-cCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 3569999999999888876555533 54433333 4544456678899998888999995 5765
No 42
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=89.10 E-value=3.6 Score=29.71 Aligned_cols=59 Identities=15% Similarity=0.221 Sum_probs=40.4
Q ss_pred eeeeeeCCC-cEEEEecCcEEEEEEcCCCc-eeEEeeecCCCCCceeECCCCCEEEEeCCCce
Q 032726 56 DVSVVVRKG-ALYTATNDGWVKYFILHNET-LVNWKHIDSQSLLGLTTTKEGDVVICDSKKVR 116 (135)
Q Consensus 56 di~avd~~G-~lYTg~~dG~I~ri~~~~~~-~~~~~~t~GRPpLGl~fd~~G~LiVaDa~~GL 116 (135)
++ .+.+++ .++++..||.|.-++..++. ...+....+.. ..+.++++++++++....|-
T Consensus 56 ~~-~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~ 116 (289)
T cd00200 56 DV-AASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYV-SSVAFSPDGRILSSSSRDKT 116 (289)
T ss_pred EE-EECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcE-EEEEEcCCCCEEEEecCCCe
Confidence 66 466776 79999999999988764432 23333333445 88999988888777663443
No 43
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=89.05 E-value=1.1 Score=24.45 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=19.6
Q ss_pred eeCCCcEEEEecCcEEEEEEcCCC
Q 032726 60 VVRKGALYTATNDGWVKYFILHNE 83 (135)
Q Consensus 60 vd~~G~lYTg~~dG~I~ri~~~~~ 83 (135)
+..+|.+|+++.+|.++.++..+|
T Consensus 3 ~~~~~~v~~~~~~g~l~a~d~~~G 26 (33)
T smart00564 3 VLSDGTVYVGSTDGTLYALDAKTG 26 (33)
T ss_pred EEECCEEEEEcCCCEEEEEEcccC
Confidence 345789999999999999987444
No 44
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=88.46 E-value=4.2 Score=29.36 Aligned_cols=64 Identities=14% Similarity=0.147 Sum_probs=40.2
Q ss_pred CCceeeeeeCCCcEEEEec-CcEEEEEEcCCCce-eEEeeecCCCCCceeECCCCCEEEEeCCCceEE
Q 032726 53 HPEDVSVVVRKGALYTATN-DGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKEGDVVICDSKKVRQH 118 (135)
Q Consensus 53 GPEdi~avd~~G~lYTg~~-dG~I~ri~~~~~~~-~~~~~t~GRPpLGl~fd~~G~LiVaDa~~GLl~ 118 (135)
...++ .+++++.++.+.. ||.|.-++...+.. ..+....+.. ..+.|+++|+.++.-...|-++
T Consensus 221 ~i~~~-~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 221 GVNSV-AFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSV-TSLAWSPDGKRLASGSADGTIR 286 (289)
T ss_pred ceEEE-EEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcE-EEEEECCCCCEEEEecCCCeEE
Confidence 45567 5777776555555 99998887643332 2233223445 8899999988777655555443
No 45
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=88.45 E-value=1.1 Score=24.67 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=18.9
Q ss_pred CCCceeeeeeCCCcEEEEecC-cEEEE
Q 032726 52 SHPEDVSVVVRKGALYTATND-GWVKY 77 (135)
Q Consensus 52 ~GPEdi~avd~~G~lYTg~~d-G~I~r 77 (135)
..|.++ ++|++|++|.+..+ .||.+
T Consensus 2 ~~P~gv-av~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 2 NYPHGV-AVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp SSEEEE-EEETTSEEEEEECCCTEEEE
T ss_pred cCCcEE-EEeCCCCEEEEECCCCEEEE
Confidence 578999 69999999988653 44443
No 46
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=88.14 E-value=2.3 Score=36.85 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=47.4
Q ss_pred eEeccCCcCCCceeeeeeCCCcEEEEe-cCcEEEEEEcCCCceeEEeeecCCCCCceeECCCCCEEEE
Q 032726 44 IKLGEGCVSHPEDVSVVVRKGALYTAT-NDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVVIC 110 (135)
Q Consensus 44 e~l~~g~~~GPEdi~avd~~G~lYTg~-~dG~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~LiVa 110 (135)
|.+..| +.=||+- -. .+|++|... ..|+|.++++++|+.+..+.+-|+| -||.|. |++.|.
T Consensus 196 evl~~G-LsmPhSP-RW-hdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~-rGL~f~--G~llvV 257 (335)
T TIGR03032 196 EVVASG-LSMPHSP-RW-YQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFT-RGLAFA--GDFAFV 257 (335)
T ss_pred CEEEcC-ccCCcCC-cE-eCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCC-ccccee--CCEEEE
Confidence 445555 5567777 23 578888875 4799999987558888899999999 999998 888765
No 47
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=87.44 E-value=2.7 Score=35.10 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=40.3
Q ss_pred eeCCCcEEEEecCcEEEEEEcCCCceeEEe-------eecCCCCCceeECCCCCEEEEeCCCceEEeCC-CCeEE
Q 032726 60 VVRKGALYTATNDGWVKYFILHNETLVNWK-------HIDSQSLLGLTTTKEGDVVICDSKKVRQHTNS-QALII 126 (135)
Q Consensus 60 vd~~G~lYTg~~dG~I~ri~~~~~~~~~~~-------~t~GRPpLGl~fd~~G~LiVaDa~~GLl~V~~-~G~v~ 126 (135)
++.+|.+|.++.||+|+.+++.++. ..|. ....-| ... .+|++|+-+...=++.+|. +|+..
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~-~~W~~~~~~~~~~~~~~-~~~---~~G~i~~g~~~g~~y~ld~~~G~~~ 134 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGL-VKWSYPLLGAVAQLSGP-ILG---SDGKIYVGSWDGKLYALDASTGTLV 134 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCc-EEecccCcCcceeccCc-eEE---eCCeEEEecccceEEEEECCCCcEE
Confidence 4578999999999999999885544 2232 122223 233 3777776665554777776 67643
No 48
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=87.03 E-value=2.3 Score=35.14 Aligned_cols=60 Identities=17% Similarity=0.224 Sum_probs=33.3
Q ss_pred CCcEEEEecCcEEEEEEcCCCceeEEee-ecCCCCCceeECCCCCEEEEeCCCceEEeCC-CCe
Q 032726 63 KGALYTATNDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKEGDVVICDSKKVRQHTNS-QAL 124 (135)
Q Consensus 63 ~G~lYTg~~dG~I~ri~~~~~~~~~~~~-t~GRPpLGl~fd~~G~LiVaDa~~GLl~V~~-~G~ 124 (135)
++.+|.++.||+++.++..+|. ..|.. +.+.. ..--.-.++.+|+......|..+|. +|+
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~-~~W~~~~~~~~-~~~p~v~~~~v~v~~~~g~l~a~d~~tG~ 166 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGK-ELWRAKLSSEV-LSPPLVANGLVVVRTNDGRLTALDAATGE 166 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCc-EeeeeccCcee-ecCCEEECCEEEEECCCCeEEEEEcCCCc
Confidence 6789999999999999874444 23322 22221 2111112345555555545666664 454
No 49
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.84 E-value=3.2 Score=36.14 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=46.6
Q ss_pred CceeeeeeCCC-cEEEEecCcEEEEEEcCCCce-eEEeeecCCCCCceeECCCCCEEEEeCCCceEEeC
Q 032726 54 PEDVSVVVRKG-ALYTATNDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKEGDVVICDSKKVRQHTN 120 (135)
Q Consensus 54 PEdi~avd~~G-~lYTg~~dG~I~ri~~~~~~~-~~~~~t~GRPpLGl~fd~~G~LiVaDa~~GLl~V~ 120 (135)
--++ .|.++| .+..|..|+.|.-|+..++.. ..+.--.+.- -+++|..+|+++++-.+.|.+++=
T Consensus 249 v~~~-~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~i-s~~~f~~d~~~l~s~s~d~~i~vw 315 (456)
T KOG0266|consen 249 VTSV-AFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGI-SGLAFSPDGNLLVSASYDGTIRVW 315 (456)
T ss_pred eEEE-EecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCce-EEEEECCCCCEEEEcCCCccEEEE
Confidence 3567 577888 788999999998887654443 3343333333 688899999988888888888774
No 50
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=85.65 E-value=4.4 Score=34.04 Aligned_cols=59 Identities=14% Similarity=0.266 Sum_probs=35.7
Q ss_pred CCcEEEEecCcEEEEEEcCCCceeEEeeecCCCCCceeECCCCCEEEEeCCCceEEeCC-CCe
Q 032726 63 KGALYTATNDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVVICDSKKVRQHTNS-QAL 124 (135)
Q Consensus 63 ~G~lYTg~~dG~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~LiVaDa~~GLl~V~~-~G~ 124 (135)
+|.+|.+..+|.++.++..+++ +.|...-+.+ -.+.. .+|++|+++..-.++.++. +|+
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~-~~W~~~~~~~-~~~~~-~~~~vy~~~~~g~l~ald~~tG~ 315 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQ-IVWKREYGSV-NDFAV-DGGRIYLVDQNDRVYALDTRGGV 315 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCC-EEEeecCCCc-cCcEE-ECCEEEEEcCCCeEEEEECCCCc
Confidence 6799999999999999875553 4454322222 22222 2445666666666666664 343
No 51
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=85.58 E-value=2.9 Score=34.27 Aligned_cols=59 Identities=15% Similarity=0.173 Sum_probs=32.5
Q ss_pred cCCCceeeeee-CCCcEEE-EecCcEEEEEEcCCCceeE-EeeecC---------CCCCceeECCCCCEEEEeC
Q 032726 51 VSHPEDVSVVV-RKGALYT-ATNDGWVKYFILHNETLVN-WKHIDS---------QSLLGLTTTKEGDVVICDS 112 (135)
Q Consensus 51 ~~GPEdi~avd-~~G~lYT-g~~dG~I~ri~~~~~~~~~-~~~t~G---------RPpLGl~fd~~G~LiVaDa 112 (135)
..-|-++ .+| ..|.+|. +....+|+.++. +|+... +.-..| +| =||+||++|+|||..-
T Consensus 170 ~~d~S~l-~~~p~t~~lliLS~es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~Qp-EGIa~d~~G~LYIvsE 240 (248)
T PF06977_consen 170 VRDLSGL-SYDPRTGHLLILSDESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQP-EGIAFDPDGNLYIVSE 240 (248)
T ss_dssp SS---EE-EEETTTTEEEEEETTTTEEEEE-T-T--EEEEEE-STTGGG-SS---SE-EEEEE-TT--EEEEET
T ss_pred eccccce-EEcCCCCeEEEEECCCCeEEEECC-CCCEEEEEEeCCcccCcccccCCc-cEEEECCCCCEEEEcC
Confidence 3456788 577 4576665 555777888864 665433 333332 57 8999999999999754
No 52
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=84.92 E-value=5.1 Score=36.97 Aligned_cols=68 Identities=16% Similarity=0.184 Sum_probs=51.4
Q ss_pred eeCCCcEEEEecCcEEEEEEcCCCce--eEEeeecCCCCCceeECCCCCEEEEeCCCceEEeCCCCeEEEE
Q 032726 60 VVRKGALYTATNDGWVKYFILHNETL--VNWKHIDSQSLLGLTTTKEGDVVICDSKKVRQHTNSQALIIVC 128 (135)
Q Consensus 60 vd~~G~lYTg~~dG~I~ri~~~~~~~--~~~~~t~GRPpLGl~fd~~G~LiVaDa~~GLl~V~~~G~v~vl 128 (135)
.+..|.+||-.-|-.+.++...+... .....++-.| +|++.+.+|++.|.-.++++.-+...+.++..
T Consensus 371 ~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP-~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~ 440 (603)
T KOG0318|consen 371 ASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQP-KGLAVLSDGGTAVVACISDIVLLQDQTKVSSI 440 (603)
T ss_pred ecCCCcEEEEecCCeEEEEecccCcccccceeecCCCc-eeEEEcCCCCEEEEEecCcEEEEecCCcceee
Confidence 44558999999999999986533332 2235788898 99999999988888888888888766655544
No 53
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=84.20 E-value=2.9 Score=35.11 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=18.4
Q ss_pred CCcEEEEecCcEEEEEEcCCCc
Q 032726 63 KGALYTATNDGWVKYFILHNET 84 (135)
Q Consensus 63 ~G~lYTg~~dG~I~ri~~~~~~ 84 (135)
+|.+|.+..+|.++.++..+|+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~ 141 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGE 141 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCC
Confidence 6789999999999999875443
No 54
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=83.25 E-value=7.1 Score=34.50 Aligned_cols=71 Identities=11% Similarity=0.118 Sum_probs=47.0
Q ss_pred eCCC-cEEEEecCcEEEEEEcCCCcee-EEeeecCCCCCceeECCCCCEEEEeCCCceEEeCCCCeEEEEEEE
Q 032726 61 VRKG-ALYTATNDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKEGDVVICDSKKVRQHTNSQALIIVCVCV 131 (135)
Q Consensus 61 d~~G-~lYTg~~dG~I~ri~~~~~~~~-~~~~t~GRPpLGl~fd~~G~LiVaDa~~GLl~V~~~G~v~vl~~~ 131 (135)
-++| ++.||..||.|+.|++..++.. ....+.||+.=++.+...|.+++.=..-|-..+-..+.-.|+.|-
T Consensus 199 ~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~ 271 (399)
T KOG0296|consen 199 IPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCN 271 (399)
T ss_pred cCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEec
Confidence 3567 7999999999999988555432 233455887668888888877665444455554444444455553
No 55
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=83.09 E-value=1.8 Score=25.08 Aligned_cols=21 Identities=29% Similarity=0.378 Sum_probs=16.9
Q ss_pred eeeCCCcEEEEecCcEEEEEEc
Q 032726 59 VVVRKGALYTATNDGWVKYFIL 80 (135)
Q Consensus 59 avd~~G~lYTg~~dG~I~ri~~ 80 (135)
+++ +|.+|.++.||+++.++.
T Consensus 18 ~v~-~g~vyv~~~dg~l~ald~ 38 (40)
T PF13570_consen 18 AVA-GGRVYVGTGDGNLYALDA 38 (40)
T ss_dssp EEC-TSEEEEE-TTSEEEEEET
T ss_pred EEE-CCEEEEEcCCCEEEEEeC
Confidence 354 789999999999999975
No 56
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=82.16 E-value=3.4 Score=36.30 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=26.9
Q ss_pred ceEeccCCcCCCceeeeee-CCCcEEEEecCcEEEEEEc
Q 032726 43 LIKLGEGCVSHPEDVSVVV-RKGALYTATNDGWVKYFIL 80 (135)
Q Consensus 43 ~e~l~~g~~~GPEdi~avd-~~G~lYTg~~dG~I~ri~~ 80 (135)
++++..+ ..||.+ ++| ..|.+|.|-.|--|||+..
T Consensus 201 VR~f~~~--sQ~EGC-VVDDe~g~LYvgEE~~GIW~y~A 236 (381)
T PF02333_consen 201 VREFKVG--SQPEGC-VVDDETGRLYVGEEDVGIWRYDA 236 (381)
T ss_dssp EEEEE-S--S-EEEE-EEETTTTEEEEEETTTEEEEEES
T ss_pred EEEecCC--CcceEE-EEecccCCEEEecCccEEEEEec
Confidence 3444443 579999 677 6799999999999999976
No 57
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=82.11 E-value=1 Score=26.69 Aligned_cols=15 Identities=13% Similarity=0.479 Sum_probs=13.6
Q ss_pred CceeECCCCCEEEEe
Q 032726 97 LGLTTTKEGDVVICD 111 (135)
Q Consensus 97 LGl~fd~~G~LiVaD 111 (135)
-||++|++||+||+=
T Consensus 16 ~~IavD~~GNiYv~G 30 (38)
T PF06739_consen 16 NGIAVDSNGNIYVTG 30 (38)
T ss_pred EEEEECCCCCEEEEE
Confidence 799999999999973
No 58
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=81.10 E-value=12 Score=32.69 Aligned_cols=77 Identities=10% Similarity=0.127 Sum_probs=51.9
Q ss_pred cCCCceeeeeeCCC-cEEEEecC---cEEE--EEEcCCCceeE--EeeecCCCCCceeECCCCCE-EEEeCCCceEEeC-
Q 032726 51 VSHPEDVSVVVRKG-ALYTATND---GWVK--YFILHNETLVN--WKHIDSQSLLGLTTTKEGDV-VICDSKKVRQHTN- 120 (135)
Q Consensus 51 ~~GPEdi~avd~~G-~lYTg~~d---G~I~--ri~~~~~~~~~--~~~t~GRPpLGl~fd~~G~L-iVaDa~~GLl~V~- 120 (135)
..-|-=+ ++++++ .+|++..+ |.|. +|++++|+.+. -..+-|-||.=+++|++|+. +++.=..|-.+|-
T Consensus 39 ~~nptyl-~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p 117 (346)
T COG2706 39 LGNPTYL-AVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYP 117 (346)
T ss_pred cCCCceE-EECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEE
Confidence 3567778 688877 79999887 5664 45544465443 34577888899999999975 4455555665555
Q ss_pred --CCCeEEEE
Q 032726 121 --SQALIIVC 128 (135)
Q Consensus 121 --~~G~v~vl 128 (135)
.+|.+...
T Consensus 118 ~~~dG~l~~~ 127 (346)
T COG2706 118 LQADGSLQPV 127 (346)
T ss_pred cccCCccccc
Confidence 35766554
No 59
>PTZ00421 coronin; Provisional
Probab=81.07 E-value=19 Score=32.26 Aligned_cols=63 Identities=16% Similarity=0.084 Sum_probs=39.4
Q ss_pred ceeeeeeCCC--cEEEEecCcEEEEEEcCCCce-eEEeeecCCCCCceeECCCCCEEEEeCCCceEEe
Q 032726 55 EDVSVVVRKG--ALYTATNDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKEGDVVICDSKKVRQHT 119 (135)
Q Consensus 55 Edi~avd~~G--~lYTg~~dG~I~ri~~~~~~~-~~~~~t~GRPpLGl~fd~~G~LiVaDa~~GLl~V 119 (135)
.++ .+.+++ .+.+|..||.|.-|+...+.. ..+..-.+ +...++|+++|+++++-+.-|-+++
T Consensus 129 ~~l-~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~-~V~sla~spdG~lLatgs~Dg~IrI 194 (493)
T PTZ00421 129 GIV-SFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSD-QITSLEWNLDGSLLCTTSKDKKLNI 194 (493)
T ss_pred EEE-EeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCC-ceEEEEEECCCCEEEEecCCCEEEE
Confidence 456 576654 589999999998887644432 22221122 2378889888887766555554443
No 60
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=80.87 E-value=6 Score=34.95 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=41.4
Q ss_pred CceeeeeeCCCcEEEEec--------------CcEEEEEEcCCC--------ceeEEeeecCCCCCceeECCC-CCEEEE
Q 032726 54 PEDVSVVVRKGALYTATN--------------DGWVKYFILHNE--------TLVNWKHIDSQSLLGLTTTKE-GDVVIC 110 (135)
Q Consensus 54 PEdi~avd~~G~lYTg~~--------------dG~I~ri~~~~~--------~~~~~~~t~GRPpLGl~fd~~-G~LiVa 110 (135)
=-.+ ++++||.||.++- -|+|+|++.... ..+.|+ .|-|=|-|+++|+. |.||..
T Consensus 179 g~~l-~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s-~G~RN~qGl~w~P~tg~Lw~~ 256 (399)
T COG2133 179 GGRL-VFGPDGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWS-YGHRNPQGLAWHPVTGALWTT 256 (399)
T ss_pred cccE-EECCCCcEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEE-eccCCccceeecCCCCcEEEE
Confidence 3467 7999999998754 368888865221 233444 34444489999976 999999
Q ss_pred eCCC
Q 032726 111 DSKK 114 (135)
Q Consensus 111 Da~~ 114 (135)
|...
T Consensus 257 e~g~ 260 (399)
T COG2133 257 EHGP 260 (399)
T ss_pred ecCC
Confidence 9876
No 61
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=79.95 E-value=13 Score=31.35 Aligned_cols=66 Identities=9% Similarity=0.165 Sum_probs=37.0
Q ss_pred eeeeeeCCCcEEEEecCcEEEEEEcCCCceeEEee------ecCCCCCceeECCCCCEEEEeCCCceEEeCCCC
Q 032726 56 DVSVVVRKGALYTATNDGWVKYFILHNETLVNWKH------IDSQSLLGLTTTKEGDVVICDSKKVRQHTNSQA 123 (135)
Q Consensus 56 di~avd~~G~lYTg~~dG~I~ri~~~~~~~~~~~~------t~GRPpLGl~fd~~G~LiVaDa~~GLl~V~~~G 123 (135)
++ .++++|.++...++|.|.+-+. ....+.|.. +.|.=.|-+++.++++++++=..-.|++-...|
T Consensus 191 ~~-gf~~~~~lw~~~~Gg~~~~s~~-~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgG 262 (302)
T PF14870_consen 191 SM-GFSPDGNLWMLARGGQIQFSDD-PDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGG 262 (302)
T ss_dssp EE-EE-TTS-EEEEETTTEEEEEE--TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTT
T ss_pred hc-eecCCCCEEEEeCCcEEEEccC-CCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCC
Confidence 56 4778888888888888876652 223344422 445433677898888898765555566644444
No 62
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=78.71 E-value=9.7 Score=31.50 Aligned_cols=70 Identities=13% Similarity=0.198 Sum_probs=40.7
Q ss_pred ccceEeccCCcCCCceeeeeeCCCcEEEE-ecCcEEEEEEcCCC----ceeEEee---ecCCCCCceeECC--CCCEEEE
Q 032726 41 KDLIKLGEGCVSHPEDVSVVVRKGALYTA-TNDGWVKYFILHNE----TLVNWKH---IDSQSLLGLTTTK--EGDVVIC 110 (135)
Q Consensus 41 ~~~e~l~~g~~~GPEdi~avd~~G~lYTg-~~dG~I~ri~~~~~----~~~~~~~---t~GRPpLGl~fd~--~G~LiVa 110 (135)
++.+.++.- ...--.+ +.|++|.+|.+ .....|.+|++... ..+.++. +==.| =|+.+++ +|+|||.
T Consensus 176 ~~v~~lG~k-~~~s~g~-~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~p-d~~~i~~~~~g~L~v~ 252 (287)
T PF03022_consen 176 SQVQDLGDK-GSQSDGM-AIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWP-DGLKIDPEGDGYLWVL 252 (287)
T ss_dssp HT-EEEEE----SECEE-EEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSE-EEEEE-T--TS-EEEE
T ss_pred ccceecccc-CCCCceE-EECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeecc-ceeeeccccCceEEEE
Confidence 344556541 1122346 68999998855 67889999987431 2233322 11345 7999999 9999986
Q ss_pred eCC
Q 032726 111 DSK 113 (135)
Q Consensus 111 Da~ 113 (135)
-..
T Consensus 253 snr 255 (287)
T PF03022_consen 253 SNR 255 (287)
T ss_dssp E-S
T ss_pred ECc
Confidence 543
No 63
>smart00284 OLF Olfactomedin-like domains.
Probab=78.20 E-value=4.3 Score=33.79 Aligned_cols=56 Identities=16% Similarity=0.209 Sum_probs=36.8
Q ss_pred eeeeeeCCC--cEEEEecC-cEEE--EEEcCCCce-eEEeeecCCCCCceeECCCCCEEEEeC
Q 032726 56 DVSVVVRKG--ALYTATND-GWVK--YFILHNETL-VNWKHIDSQSLLGLTTTKEGDVVICDS 112 (135)
Q Consensus 56 di~avd~~G--~lYTg~~d-G~I~--ri~~~~~~~-~~~~~t~GRPpLGl~fd~~G~LiVaDa 112 (135)
|+ ++|++| -||+..++ |.|+ |+++.+=+. +.|.-.+=++=.|=+|--.|-||+.++
T Consensus 132 Dl-AvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~~~k~sa~naFmvCGvLY~~~s 193 (255)
T smart00284 132 DL-AVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWITTYNKRSASNAFMICGILYVTRS 193 (255)
T ss_pred EE-EEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEcCCCcccccccEEEeeEEEEEcc
Confidence 78 699999 59998665 8888 786633233 445444444435556666677777765
No 64
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=77.34 E-value=15 Score=31.82 Aligned_cols=39 Identities=5% Similarity=-0.133 Sum_probs=30.5
Q ss_pred cEEEEEEcCCCceeEEeeecCCCCCceeECCCC-CEEEEeCC
Q 032726 73 GWVKYFILHNETLVNWKHIDSQSLLGLTTTKEG-DVVICDSK 113 (135)
Q Consensus 73 G~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G-~LiVaDa~ 113 (135)
|+|.-|+..+.+...-..+|-|| -|+ ++++| .||||..|
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P-~~~-~spDg~~lyva~~~ 66 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLP-NPV-VASDGSFFAHASTV 66 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCC-cee-ECCCCCEEEEEecc
Confidence 89999987555554445788999 886 99987 58999995
No 65
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=77.26 E-value=16 Score=30.26 Aligned_cols=70 Identities=10% Similarity=0.139 Sum_probs=48.0
Q ss_pred ceeeeee---CCCcEEEEecCcEEEEEEcCCCceeEE------eeecCCCCCceeECCC-CCEEEEeCCCceEEeCCC-C
Q 032726 55 EDVSVVV---RKGALYTATNDGWVKYFILHNETLVNW------KHIDSQSLLGLTTTKE-GDVVICDSKKVRQHTNSQ-A 123 (135)
Q Consensus 55 Edi~avd---~~G~lYTg~~dG~I~ri~~~~~~~~~~------~~t~GRPpLGl~fd~~-G~LiVaDa~~GLl~V~~~-G 123 (135)
|.+.-+| .+|.+|.-..+|+|+.|++..+..... ....|.+ .|+.|++. .+|-|.-..-==||++++ |
T Consensus 27 e~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~-~gvDFNP~aDRlRvvs~~GqNlR~npdtG 105 (236)
T PF14339_consen 27 ESLVGIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTA-FGVDFNPAADRLRVVSNTGQNLRLNPDTG 105 (236)
T ss_pred CeEEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCce-EEEecCcccCcEEEEccCCcEEEECCCCC
Confidence 4443344 689999999999999999866653332 2234556 89999964 678776444446888875 6
Q ss_pred eE
Q 032726 124 LI 125 (135)
Q Consensus 124 ~v 125 (135)
.+
T Consensus 106 av 107 (236)
T PF14339_consen 106 AV 107 (236)
T ss_pred Cc
Confidence 64
No 66
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=76.63 E-value=7 Score=22.50 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=17.8
Q ss_pred CcEEEEecCcEEEEEEcCCCc
Q 032726 64 GALYTATNDGWVKYFILHNET 84 (135)
Q Consensus 64 G~lYTg~~dG~I~ri~~~~~~ 84 (135)
|.+|.++.||.|+-++..+|.
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~ 21 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGK 21 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTS
T ss_pred CEEEEeCCCCEEEEEECCCCC
Confidence 579999999999999885554
No 67
>PRK13684 Ycf48-like protein; Provisional
Probab=76.29 E-value=21 Score=29.90 Aligned_cols=59 Identities=8% Similarity=0.059 Sum_probs=32.0
Q ss_pred eeCCCcEEEEecCcEEEEEEcCCC-ceeEEeeecCCCCCceeECCCCCEEEEeCCCceEEe
Q 032726 60 VVRKGALYTATNDGWVKYFILHNE-TLVNWKHIDSQSLLGLTTTKEGDVVICDSKKVRQHT 119 (135)
Q Consensus 60 vd~~G~lYTg~~dG~I~ri~~~~~-~~~~~~~t~GRPpLGl~fd~~G~LiVaDa~~GLl~V 119 (135)
++++|..+.....|.|++-..+++ +|+....-..+.+.++.+.++|+++++ +..|.+..
T Consensus 180 ~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~ 239 (334)
T PRK13684 180 RSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRF 239 (334)
T ss_pred ECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEE
Confidence 334444444444565655422122 244332222344478888888998776 45677766
No 68
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=75.81 E-value=11 Score=33.16 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=18.8
Q ss_pred CCcEEEEecCcEEEEEEcCCCc
Q 032726 63 KGALYTATNDGWVKYFILHNET 84 (135)
Q Consensus 63 ~G~lYTg~~dG~I~ri~~~~~~ 84 (135)
+|.+|.++.||+++.++..+++
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~ 82 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGK 82 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCCh
Confidence 7899999999999999875543
No 69
>PRK03629 tolB translocation protein TolB; Provisional
Probab=75.51 E-value=34 Score=29.40 Aligned_cols=72 Identities=14% Similarity=0.107 Sum_probs=41.5
Q ss_pred eeeeeeCCCc-E-EEEecCc--EEEEEEcCCCceeEEeeecCCCCCceeECCCCCEEEEeC-CC---ceEEeCC-CCeEE
Q 032726 56 DVSVVVRKGA-L-YTATNDG--WVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVVICDS-KK---VRQHTNS-QALII 126 (135)
Q Consensus 56 di~avd~~G~-l-YTg~~dG--~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~LiVaDa-~~---GLl~V~~-~G~v~ 126 (135)
+. .+.+||+ | |+...+| .|++++..++..+.+...++.. -...|.++|+.++.-+ .. -+..++. +|..+
T Consensus 291 ~~-~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~-~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~ 368 (429)
T PRK03629 291 EP-TWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQN-QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ 368 (429)
T ss_pred ce-EECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCc-cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence 44 4667885 5 4444444 6888876555555444334444 5678889987655432 22 2566664 46665
Q ss_pred EEE
Q 032726 127 VCV 129 (135)
Q Consensus 127 vl~ 129 (135)
.|.
T Consensus 369 ~Lt 371 (429)
T PRK03629 369 VLT 371 (429)
T ss_pred EeC
Confidence 543
No 70
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=74.70 E-value=11 Score=31.38 Aligned_cols=56 Identities=18% Similarity=0.465 Sum_probs=37.3
Q ss_pred CCceeeeeeCCCcEEEEecCc-------EEEEEEcCCCce-eEE---eee-------cCCC----CCceeECCCCC-EEE
Q 032726 53 HPEDVSVVVRKGALYTATNDG-------WVKYFILHNETL-VNW---KHI-------DSQS----LLGLTTTKEGD-VVI 109 (135)
Q Consensus 53 GPEdi~avd~~G~lYTg~~dG-------~I~ri~~~~~~~-~~~---~~t-------~GRP----pLGl~fd~~G~-LiV 109 (135)
=||++ +++.+|.+|-+...+ +|++++. +|+. +.+ ... .+|+ +=||++.++|+ ||+
T Consensus 86 D~Egi-~~~~~g~~~is~E~~~~~~~~p~I~~~~~-~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~ 163 (326)
T PF13449_consen 86 DPEGI-AVPPDGSFWISSEGGRTGGIPPRIRRFDL-DGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA 163 (326)
T ss_pred ChhHe-EEecCCCEEEEeCCccCCCCCCEEEEECC-CCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence 68999 688999999999877 8999976 4543 222 000 2222 13677888888 554
Q ss_pred E
Q 032726 110 C 110 (135)
Q Consensus 110 a 110 (135)
+
T Consensus 164 ~ 164 (326)
T PF13449_consen 164 A 164 (326)
T ss_pred E
Confidence 3
No 71
>PTZ00420 coronin; Provisional
Probab=74.45 E-value=21 Score=32.77 Aligned_cols=58 Identities=10% Similarity=0.054 Sum_probs=37.8
Q ss_pred ceeeeeeCCCc--EEEEecCcEEEEEEcCCCce-eEEeeecCCCCCceeECCCCCEEEEeCCCc
Q 032726 55 EDVSVVVRKGA--LYTATNDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKEGDVVICDSKKV 115 (135)
Q Consensus 55 Edi~avd~~G~--lYTg~~dG~I~ri~~~~~~~-~~~~~t~GRPpLGl~fd~~G~LiVaDa~~G 115 (135)
.++ ++.+++. +.|+..||.|.-|+..++.. ..+.+ .+.. ..+.|+++|+++++-..-|
T Consensus 129 ~sV-af~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~-~~~V-~SlswspdG~lLat~s~D~ 189 (568)
T PTZ00420 129 SII-DWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM-PKKL-SSLKWNIKGNLLSGTCVGK 189 (568)
T ss_pred EEE-EECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec-CCcE-EEEEECCCCCEEEEEecCC
Confidence 466 5777764 35889999998887644432 22222 2334 7899999999887655443
No 72
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=73.45 E-value=22 Score=31.06 Aligned_cols=64 Identities=5% Similarity=0.004 Sum_probs=44.4
Q ss_pred eeCCCcEEEEecCcEEEEEEcCCCc-eeEEeeecCCCCCceeECCCCCEEEEeCCCceEEeCCCC
Q 032726 60 VVRKGALYTATNDGWVKYFILHNET-LVNWKHIDSQSLLGLTTTKEGDVVICDSKKVRQHTNSQA 123 (135)
Q Consensus 60 vd~~G~lYTg~~dG~I~ri~~~~~~-~~~~~~t~GRPpLGl~fd~~G~LiVaDa~~GLl~V~~~G 123 (135)
...+|.++.-...|.++|-..+.+. |+....-..+.+-++.++.+|.++++-..-+++.-+.+|
T Consensus 246 ~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G 310 (398)
T PLN00033 246 RSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSKGTG 310 (398)
T ss_pred EcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEecCCC
Confidence 4467788888888888886543333 454433333344788999999999998888887766666
No 73
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=72.67 E-value=22 Score=31.97 Aligned_cols=62 Identities=15% Similarity=0.128 Sum_probs=37.0
Q ss_pred CCCcEEEEecCcEEEEEEcCCCceeEEeeecCCC----C--------CceeECCCCCEEEEeCCCceEEeCC-CCeE
Q 032726 62 RKGALYTATNDGWVKYFILHNETLVNWKHIDSQS----L--------LGLTTTKEGDVVICDSKKVRQHTNS-QALI 125 (135)
Q Consensus 62 ~~G~lYTg~~dG~I~ri~~~~~~~~~~~~t~GRP----p--------LGl~fd~~G~LiVaDa~~GLl~V~~-~G~v 125 (135)
.+|.+|.++.+|+|+.++..++ .+.|....+.+ + -|+++. ++.+|+++..-.|+.+|. +|++
T Consensus 68 ~~g~vyv~s~~g~v~AlDa~TG-k~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~~v~v~t~dg~l~ALDa~TGk~ 142 (527)
T TIGR03075 68 VDGVMYVTTSYSRVYALDAKTG-KELWKYDPKLPDDVIPVMCCDVVNRGVALY-DGKVFFGTLDARLVALDAKTGKV 142 (527)
T ss_pred ECCEEEEECCCCcEEEEECCCC-ceeeEecCCCCcccccccccccccccceEE-CCEEEEEcCCCEEEEEECCCCCE
Confidence 3789999999999999987444 34443322111 0 022222 346677666666777774 4654
No 74
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.64 E-value=17 Score=31.43 Aligned_cols=67 Identities=9% Similarity=0.026 Sum_probs=43.8
Q ss_pred ee-CCCcEEEEecCcEEEEEEcCCCceeEEeeecC-CCCCceeECC-CCCEEEEeCCCceEEeCCC-CeEEE
Q 032726 60 VV-RKGALYTATNDGWVKYFILHNETLVNWKHIDS-QSLLGLTTTK-EGDVVICDSKKVRQHTNSQ-ALIIV 127 (135)
Q Consensus 60 vd-~~G~lYTg~~dG~I~ri~~~~~~~~~~~~t~G-RPpLGl~fd~-~G~LiVaDa~~GLl~V~~~-G~v~v 127 (135)
+| ..|.||.|++||..+.+++ ....-.|...|| .--.+=..+. +|.||++-..--+++|+++ +.-++
T Consensus 101 ~d~~~glIycgshd~~~yalD~-~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~ 171 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDP-KTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTE 171 (354)
T ss_pred EcCCCceEEEecCCCcEEEecc-cccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcce
Confidence 45 4568999999999999976 332233444443 2212334454 7899999888888999864 54333
No 75
>PRK04792 tolB translocation protein TolB; Provisional
Probab=71.75 E-value=36 Score=29.54 Aligned_cols=71 Identities=13% Similarity=0.101 Sum_probs=41.5
Q ss_pred eeeeeeCCCc-E-EEEecCcE--EEEEEcCCCceeEEeeecCCCCCceeECCCCCEEEEeCCC----ceEEeCC-CCeEE
Q 032726 56 DVSVVVRKGA-L-YTATNDGW--VKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVVICDSKK----VRQHTNS-QALII 126 (135)
Q Consensus 56 di~avd~~G~-l-YTg~~dG~--I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~LiVaDa~~----GLl~V~~-~G~v~ 126 (135)
+. .+.+||+ + |+...+|+ |+.++..++..+.+....+.. ...+|+++|+-++.-+.+ -++.++. +|+++
T Consensus 266 ~~-~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~-~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 266 AP-RFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAID-TEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS 343 (448)
T ss_pred Ce-eECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCc-cceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 55 5778885 5 56777885 888876555444433322333 456778888755443332 2666664 35555
Q ss_pred EE
Q 032726 127 VC 128 (135)
Q Consensus 127 vl 128 (135)
.|
T Consensus 344 ~L 345 (448)
T PRK04792 344 RL 345 (448)
T ss_pred EE
Confidence 44
No 76
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=71.66 E-value=9.2 Score=32.60 Aligned_cols=54 Identities=20% Similarity=0.302 Sum_probs=29.2
Q ss_pred eeCCC-cEEEEecCcEEEEEEcCCCcee-EEeeecCCCCCceeEC-CCCCEEEEeCCCc
Q 032726 60 VVRKG-ALYTATNDGWVKYFILHNETLV-NWKHIDSQSLLGLTTT-KEGDVVICDSKKV 115 (135)
Q Consensus 60 vd~~G-~lYTg~~dG~I~ri~~~~~~~~-~~~~t~GRPpLGl~fd-~~G~LiVaDa~~G 115 (135)
|-.+| -.|||..||.+.-|+..+-..+ ++.+. -|---+..+ .+++||+||-.--
T Consensus 91 F~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~--spVn~vvlhpnQteLis~dqsg~ 147 (311)
T KOG0315|consen 91 FQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN--SPVNTVVLHPNQTELISGDQSGN 147 (311)
T ss_pred EeecCeEEEecCCCceEEEEeccCcccchhccCC--CCcceEEecCCcceEEeecCCCc
Confidence 44677 4999999999876655332221 12111 121223333 4567777775433
No 77
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=71.64 E-value=21 Score=29.81 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=18.9
Q ss_pred CCCcEEEEecCcEEEEEEcCCCc
Q 032726 62 RKGALYTATNDGWVKYFILHNET 84 (135)
Q Consensus 62 ~~G~lYTg~~dG~I~ri~~~~~~ 84 (135)
.+|++|.|+.+|.++.++.+++.
T Consensus 110 ~~G~i~~g~~~g~~y~ld~~~G~ 132 (370)
T COG1520 110 SDGKIYVGSWDGKLYALDASTGT 132 (370)
T ss_pred eCCeEEEecccceEEEEECCCCc
Confidence 38999999999999999874443
No 78
>PRK04922 tolB translocation protein TolB; Provisional
Probab=71.60 E-value=40 Score=28.84 Aligned_cols=70 Identities=14% Similarity=0.054 Sum_probs=39.3
Q ss_pred eeeeeeCCCc-E-EEEecCc--EEEEEEcCCCceeEEeeecCCCCCceeECCCCCEEEEeCCC-c---eEEeCC-CCeEE
Q 032726 56 DVSVVVRKGA-L-YTATNDG--WVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVVICDSKK-V---RQHTNS-QALII 126 (135)
Q Consensus 56 di~avd~~G~-l-YTg~~dG--~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~LiVaDa~~-G---Ll~V~~-~G~v~ 126 (135)
+. .+.+||+ + |+...+| .|+.++..++..+.+..-.+.. ...+|+++|+-++.-+.+ | ++.++- .|.++
T Consensus 252 ~~-~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~-~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~ 329 (433)
T PRK04922 252 AP-SFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGID-TEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE 329 (433)
T ss_pred Cc-eECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCc-cceEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 45 5778885 5 5666676 5988877555544433322333 456788888744433322 2 666664 34444
Q ss_pred E
Q 032726 127 V 127 (135)
Q Consensus 127 v 127 (135)
.
T Consensus 330 ~ 330 (433)
T PRK04922 330 R 330 (433)
T ss_pred E
Confidence 3
No 79
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=71.16 E-value=5.4 Score=32.71 Aligned_cols=27 Identities=22% Similarity=0.473 Sum_probs=18.8
Q ss_pred cCCCceeeeeeCCCcEEEEecCcEEEEE
Q 032726 51 VSHPEDVSVVVRKGALYTATNDGWVKYF 78 (135)
Q Consensus 51 ~~GPEdi~avd~~G~lYTg~~dG~I~ri 78 (135)
+..||.| ++|++|+||-.+.-..-+|+
T Consensus 221 ~~QpEGI-a~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 221 IPQPEGI-AFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp --SEEEE-EE-TT--EEEEETTTEEEEE
T ss_pred cCCccEE-EECCCCCEEEEcCCceEEEe
Confidence 5679999 79999999999887777665
No 80
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=70.87 E-value=12 Score=36.14 Aligned_cols=71 Identities=15% Similarity=0.129 Sum_probs=49.8
Q ss_pred EeccCCcCCCc--eeeeeeCCC-cEEEEecCcEEEEEEcCCCce--eEEeeecCCCCCceeECCCCCEEEEeCCCceEE
Q 032726 45 KLGEGCVSHPE--DVSVVVRKG-ALYTATNDGWVKYFILHNETL--VNWKHIDSQSLLGLTTTKEGDVVICDSKKVRQH 118 (135)
Q Consensus 45 ~l~~g~~~GPE--di~avd~~G-~lYTg~~dG~I~ri~~~~~~~--~~~~~t~GRPpLGl~fd~~G~LiVaDa~~GLl~ 118 (135)
.+.+-|.+=++ ++ +..+|| .|-||..||+|.-|+...+-. +.-+||.|-- |+.|.+.|+.+++-+.-|-.+
T Consensus 342 YVlKQQgH~~~i~~l-~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt--~v~f~~~g~~llssSLDGtVR 417 (893)
T KOG0291|consen 342 YVLKQQGHSDRITSL-AYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVT--AVQFTARGNVLLSSSLDGTVR 417 (893)
T ss_pred eeeeccccccceeeE-EECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceE--EEEEEecCCEEEEeecCCeEE
Confidence 44554444443 44 355888 699999999999887644432 3346888864 999999999988887766543
No 81
>PRK13684 Ycf48-like protein; Provisional
Probab=70.62 E-value=63 Score=27.07 Aligned_cols=67 Identities=10% Similarity=0.010 Sum_probs=36.7
Q ss_pred CCceeeeeeCCCcEEEEecCcEEEEEEcCCCceeEEee---ecCCCCCceeECCCCCEEEEeCCCceEEeCC
Q 032726 53 HPEDVSVVVRKGALYTATNDGWVKYFILHNETLVNWKH---IDSQSLLGLTTTKEGDVVICDSKKVRQHTNS 121 (135)
Q Consensus 53 GPEdi~avd~~G~lYTg~~dG~I~ri~~~~~~~~~~~~---t~GRPpLGl~fd~~G~LiVaDa~~GLl~V~~ 121 (135)
-.-|+ .|..+.+.|...++|.|+|-.....+|+.... ....+++.+.|+. ++.+++-.+-.+++-+.
T Consensus 47 ~l~~v-~F~d~~~g~avG~~G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~-~~~~~~G~~g~i~~S~D 116 (334)
T PRK13684 47 NLLDI-AFTDPNHGWLVGSNRTLLETNDGGETWEERSLDLPEENFRLISISFKG-DEGWIVGQPSLLLHTTD 116 (334)
T ss_pred ceEEE-EEeCCCcEEEEECCCEEEEEcCCCCCceECccCCcccccceeeeEEcC-CcEEEeCCCceEEEECC
Confidence 34467 45545566666678888887432224554321 1133457888874 35666655444665443
No 82
>PRK03629 tolB translocation protein TolB; Provisional
Probab=70.12 E-value=41 Score=28.96 Aligned_cols=71 Identities=11% Similarity=-0.011 Sum_probs=41.4
Q ss_pred eeeeeeCCCc-EE-EEecCc--EEEEEEcCCCceeEEeeecCCCCCceeECCCCCEEEEeCCC----ceEEeCCC-CeEE
Q 032726 56 DVSVVVRKGA-LY-TATNDG--WVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVVICDSKK----VRQHTNSQ-ALII 126 (135)
Q Consensus 56 di~avd~~G~-lY-Tg~~dG--~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~LiVaDa~~----GLl~V~~~-G~v~ 126 (135)
+. .+.+||+ ++ +...+| .|+.++..++..+.+....+.. ....|+++|+-++.-+.+ -++.++.+ |.++
T Consensus 247 ~~-~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~-~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~ 324 (429)
T PRK03629 247 AP-AFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNN-TEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ 324 (429)
T ss_pred Ce-EECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCc-CceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE
Confidence 45 5788885 54 445566 5888877555544443333344 677888888755443332 36666654 4454
Q ss_pred EE
Q 032726 127 VC 128 (135)
Q Consensus 127 vl 128 (135)
.+
T Consensus 325 ~l 326 (429)
T PRK03629 325 RI 326 (429)
T ss_pred Ee
Confidence 43
No 83
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=67.87 E-value=54 Score=27.11 Aligned_cols=68 Identities=9% Similarity=-0.071 Sum_probs=39.0
Q ss_pred eeCCCc-EEEEecC---cEEEEEEcCCCceeEEeeecCCCCCceeECCCCC-EEEEeCC---CceEEeCCC-CeEEEE
Q 032726 60 VVRKGA-LYTATND---GWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGD-VVICDSK---KVRQHTNSQ-ALIIVC 128 (135)
Q Consensus 60 vd~~G~-lYTg~~d---G~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~-LiVaDa~---~GLl~V~~~-G~v~vl 128 (135)
+.+||+ ++....+ ..|+.++..++..+.+....|.. ...+|+++|+ |++.... .-|+.++.+ |..+.+
T Consensus 197 ~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~-~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l 273 (417)
T TIGR02800 197 WSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMN-GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL 273 (417)
T ss_pred CCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCc-cceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC
Confidence 456774 4444433 46888876555555555555665 7788998886 4443322 237766643 444433
No 84
>PRK04922 tolB translocation protein TolB; Provisional
Probab=67.56 E-value=49 Score=28.30 Aligned_cols=71 Identities=6% Similarity=0.063 Sum_probs=40.0
Q ss_pred eeeeeeCCCc-E-EEEecCcE--EEEEEcCCCceeEEeeecCCCCCceeECCCCCEEEE-eCCC---ceEEeCC-CCeEE
Q 032726 56 DVSVVVRKGA-L-YTATNDGW--VKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVVIC-DSKK---VRQHTNS-QALII 126 (135)
Q Consensus 56 di~avd~~G~-l-YTg~~dG~--I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~LiVa-Da~~---GLl~V~~-~G~v~ 126 (135)
+. .+++||+ + |+...+|+ |+.++..++..+.+...++.. -..+|+++|+.++. .... -|..++. +|..+
T Consensus 296 ~~-~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~-~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 296 EP-TWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYN-ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred ce-EECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCc-cCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence 45 4677885 4 44455665 888876445554444333344 56788889875543 3222 2666664 45554
Q ss_pred EE
Q 032726 127 VC 128 (135)
Q Consensus 127 vl 128 (135)
.|
T Consensus 374 ~L 375 (433)
T PRK04922 374 TL 375 (433)
T ss_pred EC
Confidence 43
No 85
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=67.22 E-value=33 Score=28.35 Aligned_cols=64 Identities=13% Similarity=0.105 Sum_probs=41.7
Q ss_pred cEEEEe-cCcEEEEEEc---CCC----------ceeEEeeecCCCCCceeECCCCCEEEEeCCC-ceEEeCCCC-----e
Q 032726 65 ALYTAT-NDGWVKYFIL---HNE----------TLVNWKHIDSQSLLGLTTTKEGDVVICDSKK-VRQHTNSQA-----L 124 (135)
Q Consensus 65 ~lYTg~-~dG~I~ri~~---~~~----------~~~~~~~t~GRPpLGl~fd~~G~LiVaDa~~-GLl~V~~~G-----~ 124 (135)
.+|.+. ...+++|+.. .+. ..+.+...++.- =|+++|++|+||..|... ++...++++ +
T Consensus 144 ~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s-~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~ 222 (287)
T PF03022_consen 144 WLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQS-DGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPEN 222 (287)
T ss_dssp EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SE-CEEEEETTTEEEEEECCCTEEEEEETTTSB-GCC
T ss_pred EEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCC-ceEEECCCCcEEEecCCCCeEEEEeCCCCcCccc
Confidence 466665 5557888854 111 123333434455 799999999999999876 899999988 6
Q ss_pred EEEEE
Q 032726 125 IIVCV 129 (135)
Q Consensus 125 v~vl~ 129 (135)
+.+++
T Consensus 223 ~~~l~ 227 (287)
T PF03022_consen 223 FEILA 227 (287)
T ss_dssp EEEEE
T ss_pred hheeE
Confidence 76665
No 86
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=67.07 E-value=16 Score=30.56 Aligned_cols=47 Identities=17% Similarity=0.360 Sum_probs=31.8
Q ss_pred CCcEEEEe-cCcEEEEEEcCCCceeEEeeecC----------C--CCCceeECCCC-CEEE
Q 032726 63 KGALYTAT-NDGWVKYFILHNETLVNWKHIDS----------Q--SLLGLTTTKEG-DVVI 109 (135)
Q Consensus 63 ~G~lYTg~-~dG~I~ri~~~~~~~~~~~~t~G----------R--PpLGl~fd~~G-~LiV 109 (135)
||.+|+-. ++-+|.||++++|++..|-...| + -|-||++++++ ++||
T Consensus 185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~i 245 (262)
T COG3823 185 DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLI 245 (262)
T ss_pred ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEE
Confidence 67788765 57799999998887665532222 1 24788888765 5665
No 87
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=66.44 E-value=7.6 Score=20.56 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=12.5
Q ss_pred eeeeeeCCCcEEEEecC
Q 032726 56 DVSVVVRKGALYTATND 72 (135)
Q Consensus 56 di~avd~~G~lYTg~~d 72 (135)
++ ..|++|+++.|+.+
T Consensus 9 ~i-~~D~~G~lWigT~~ 24 (24)
T PF07494_consen 9 SI-YEDSDGNLWIGTYN 24 (24)
T ss_dssp EE-EE-TTSCEEEEETS
T ss_pred EE-EEcCCcCEEEEeCC
Confidence 67 68999999999864
No 88
>PRK04792 tolB translocation protein TolB; Provisional
Probab=65.73 E-value=51 Score=28.63 Aligned_cols=68 Identities=7% Similarity=-0.034 Sum_probs=38.9
Q ss_pred eeeCCCc--EEEEecCc--EEEEEEcCCCceeEEeeecCCCCCceeECCCCC-EEEEeCCCc---eEEeCC-CCeEEE
Q 032726 59 VVVRKGA--LYTATNDG--WVKYFILHNETLVNWKHIDSQSLLGLTTTKEGD-VVICDSKKV---RQHTNS-QALIIV 127 (135)
Q Consensus 59 avd~~G~--lYTg~~dG--~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~-LiVaDa~~G---Ll~V~~-~G~v~v 127 (135)
.+.+||+ .|+...+| .|+.++...+..+.+....|.- ...+|+++|+ |+++-...| |+.++. +|+++.
T Consensus 224 ~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~-~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~ 300 (448)
T PRK04792 224 AWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGIN-GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR 300 (448)
T ss_pred eECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCc-CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE
Confidence 4667884 45555555 5888876445444444444544 4668888887 444422233 676664 344443
No 89
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=65.41 E-value=62 Score=30.13 Aligned_cols=71 Identities=13% Similarity=0.027 Sum_probs=52.2
Q ss_pred ceeeeeeCCCcEEEEecCcEEEEEEcCCCceeEEeeecCCCCCceeECCCCCEEEEeCC---CceEEeCCCCeEEE
Q 032726 55 EDVSVVVRKGALYTATNDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVVICDSK---KVRQHTNSQALIIV 127 (135)
Q Consensus 55 Edi~avd~~G~lYTg~~dG~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~LiVaDa~---~GLl~V~~~G~v~v 127 (135)
|+. .|++.|.+-.|+..|+-+-++.++ ..-.-.++|+.|+--++|.++|+.+..-+. .=|++|+.+|+--+
T Consensus 411 ~~~-~fhpsg~va~Gt~~G~w~V~d~e~-~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~ 484 (626)
T KOG2106|consen 411 ECA-DFHPSGVVAVGTATGRWFVLDTET-QDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYS 484 (626)
T ss_pred eEe-eccCcceEEEeeccceEEEEeccc-ceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEE
Confidence 566 588889999999999998886533 323335888999667889999998765444 34778888886543
No 90
>PRK05137 tolB translocation protein TolB; Provisional
Probab=64.38 E-value=60 Score=27.69 Aligned_cols=48 Identities=10% Similarity=0.111 Sum_probs=26.6
Q ss_pred eeeCCCc--EEEEecCcE--EEEEEcCCCceeEEeeecCCCCCceeECCCCCE
Q 032726 59 VVVRKGA--LYTATNDGW--VKYFILHNETLVNWKHIDSQSLLGLTTTKEGDV 107 (135)
Q Consensus 59 avd~~G~--lYTg~~dG~--I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~L 107 (135)
.+.+||+ +|+...+|. |+.++..++....+....+.. ....|+++|+-
T Consensus 252 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~-~~~~~spDG~~ 303 (435)
T PRK05137 252 RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAID-TSPSYSPDGSQ 303 (435)
T ss_pred EECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCcc-CceeEcCCCCE
Confidence 4678885 467776665 888876444433333222222 33456666653
No 91
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=64.27 E-value=18 Score=33.47 Aligned_cols=38 Identities=18% Similarity=0.333 Sum_probs=25.4
Q ss_pred ceEeccCCcCCCceeeeeeCCC-cEEEEecCcEEEEEEcC
Q 032726 43 LIKLGEGCVSHPEDVSVVVRKG-ALYTATNDGWVKYFILH 81 (135)
Q Consensus 43 ~e~l~~g~~~GPEdi~avd~~G-~lYTg~~dG~I~ri~~~ 81 (135)
..++..|-..+=-.+ .+.+|| .||+|.+||.|.+|+-.
T Consensus 312 ~~~~i~GHnK~ITaL-tv~~d~~~i~SgsyDG~I~~W~~~ 350 (603)
T KOG0318|consen 312 VLKVISGHNKSITAL-TVSPDGKTIYSGSYDGHINSWDSG 350 (603)
T ss_pred hhheecccccceeEE-EEcCCCCEEEeeccCceEEEEecC
Confidence 334444443444455 366666 69999999999999753
No 92
>PRK01742 tolB translocation protein TolB; Provisional
Probab=63.61 E-value=67 Score=27.45 Aligned_cols=68 Identities=9% Similarity=0.011 Sum_probs=39.7
Q ss_pred eeeeeeCCCc-EE-EEecCc--EEEEEEcCCCceeEEeeecCCCCCceeECCCCCEEEEeCCCceEEeCC-CCeEEEE
Q 032726 56 DVSVVVRKGA-LY-TATNDG--WVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVVICDSKKVRQHTNS-QALIIVC 128 (135)
Q Consensus 56 di~avd~~G~-lY-Tg~~dG--~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~LiVaDa~~GLl~V~~-~G~v~vl 128 (135)
+. .+.+||+ |+ ++..+| +|++++...+..+.+.. .+ ...++.++|+.++.-+..+++.+|. +|..+.+
T Consensus 296 ~~-~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~-~~---~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~l 368 (429)
T PRK01742 296 EP-SWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG-RG---YSAQISADGKTLVMINGDNVVKQDLTSGSTEVL 368 (429)
T ss_pred CE-EECCCCCEEEEEECCCCCceEEEEECCCCCeEEecC-CC---CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEe
Confidence 45 4677885 44 444556 67777653333333211 12 3456888988766656678888885 4665544
No 93
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=63.40 E-value=43 Score=34.58 Aligned_cols=74 Identities=14% Similarity=0.174 Sum_probs=49.9
Q ss_pred cCCCceeeeeeCCCcEEEEecCcEEEEEEcCCCceeE--------Ee-eec-----------CCCCCceeECC-CCCEEE
Q 032726 51 VSHPEDVSVVVRKGALYTATNDGWVKYFILHNETLVN--------WK-HID-----------SQSLLGLTTTK-EGDVVI 109 (135)
Q Consensus 51 ~~GPEdi~avd~~G~lYTg~~dG~I~ri~~~~~~~~~--------~~-~t~-----------GRPpLGl~fd~-~G~LiV 109 (135)
+.-|-.| +||++|.+|.. ||+-+|.-..++.... +. .+| =.| --|+.|+ ++.|+|
T Consensus 474 L~~PkGI-a~dk~g~lYfa--D~t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWP-T~LaV~Pmdnsl~V 549 (1899)
T KOG4659|consen 474 LIFPKGI-AFDKMGNLYFA--DGTRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWP-TSLAVDPMDNSLLV 549 (1899)
T ss_pred eccCCce-eEccCCcEEEe--cccEEEEeccCceEEEeccCCCCccCccccccccchhheeeecc-cceeecCCCCeEEE
Confidence 4568889 79999999986 5554443232442111 10 111 235 6888886 677999
Q ss_pred EeCCCceEEeCCCCeEEEEE
Q 032726 110 CDSKKVRQHTNSQALIIVCV 129 (135)
Q Consensus 110 aDa~~GLl~V~~~G~v~vl~ 129 (135)
.|... ++++++++.|.+.+
T Consensus 550 ld~nv-vlrit~~~rV~Ii~ 568 (1899)
T KOG4659|consen 550 LDTNV-VLRITVVHRVRIIL 568 (1899)
T ss_pred eecce-EEEEccCccEEEEc
Confidence 99987 99999999998643
No 94
>COG4256 HemP Hemin uptake protein [Inorganic ion transport and metabolism]
Probab=63.25 E-value=15 Score=24.54 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=28.6
Q ss_pred CCCcccCCCCCCCCCC-cccccc-eEeccCCcCCCceeeeeeCCCcEEEE
Q 032726 22 PPVSSSASLLSTSKES-SSMKDL-IKLGEGCVSHPEDVSVVVRKGALYTA 69 (135)
Q Consensus 22 ~pi~P~~~~~p~~~~N-~~L~~~-e~l~~g~~~GPEdi~avd~~G~lYTg 69 (135)
+|.|-.+..++..++| ..+... +++-...+.||+.=.++|.+|.+|+-
T Consensus 2 sp~D~~~~~~s~da~~~~~~p~~~r~v~S~~Lfgg~~~i~I~H~Ga~Y~l 51 (63)
T COG4256 2 SPTDSRKLTPSTDANHKTALPQPIRRVSSQTLFGGDGKIIIDHDGAEYLL 51 (63)
T ss_pred CcccccccCCCcCCCccccCCCccceechhhcccCCCeEEEecCCceEEE
Confidence 4556665555544443 345444 44444457788764478899998863
No 95
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=63.11 E-value=9.4 Score=32.91 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=29.1
Q ss_pred eeC-CCcEEEEecCcEEEEEEcCCCc-eeEEeeecCCCC
Q 032726 60 VVR-KGALYTATNDGWVKYFILHNET-LVNWKHIDSQSL 96 (135)
Q Consensus 60 vd~-~G~lYTg~~dG~I~ri~~~~~~-~~~~~~t~GRPp 96 (135)
++. +|.+|.++..|++++.+.+.+. .+.|+.+++.|.
T Consensus 143 i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~Pi 181 (354)
T KOG4649|consen 143 IAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPI 181 (354)
T ss_pred ecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCcc
Confidence 454 7899999999999999875443 577888887773
No 96
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=63.08 E-value=21 Score=32.13 Aligned_cols=61 Identities=15% Similarity=0.167 Sum_probs=40.6
Q ss_pred eeeCCC-cEEEEecCcEEEEEEcCCCceeEEeeecCCC--CCceeECCCCCEEEEeCCCceEEeCCCCeEEE
Q 032726 59 VVVRKG-ALYTATNDGWVKYFILHNETLVNWKHIDSQS--LLGLTTTKEGDVVICDSKKVRQHTNSQALIIV 127 (135)
Q Consensus 59 avd~~G-~lYTg~~dG~I~ri~~~~~~~~~~~~t~GRP--pLGl~fd~~G~LiVaDa~~GLl~V~~~G~v~v 127 (135)
+|.++| .+-+|..||.|+-|+...+..|..-...+-+ ..-++|++ +.+||++.+.++.++.
T Consensus 394 vfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~--------sG~~Llsadk~~~v~l 457 (459)
T KOG0288|consen 394 VFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP--------SGSGLLSADKQKAVTL 457 (459)
T ss_pred EECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC--------CCchhhcccCCcceEe
Confidence 467777 5789999999999987656666543333333 13445655 5577888887776653
No 97
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=62.39 E-value=13 Score=32.21 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=36.5
Q ss_pred ceeeeee-CCCcEEEEecCcEEEEEEcCCC-ceeEEeeecCCCCCceeECCCCCE-EEEeCCC
Q 032726 55 EDVSVVV-RKGALYTATNDGWVKYFILHNE-TLVNWKHIDSQSLLGLTTTKEGDV-VICDSKK 114 (135)
Q Consensus 55 Edi~avd-~~G~lYTg~~dG~I~ri~~~~~-~~~~~~~t~GRPpLGl~fd~~G~L-iVaDa~~ 114 (135)
.++ +|- ..|.++||..||.|..|+..+. +..++..-.+-- --++|+.+|.+ =|+++|.
T Consensus 236 Nai-~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI-~slsfs~dG~~LAia~sy~ 296 (323)
T KOG1036|consen 236 NAI-AFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSI-SSLSFSMDGSLLAIASSYQ 296 (323)
T ss_pred cee-EeccccceEEecCCCceEEEccCcchhhhhhccCCCCce-EEEEeccCCCeEEEEechh
Confidence 467 466 4689999999999999976222 122232222222 35788888864 4566664
No 98
>PRK02889 tolB translocation protein TolB; Provisional
Probab=62.27 E-value=88 Score=26.77 Aligned_cols=71 Identities=8% Similarity=0.070 Sum_probs=38.2
Q ss_pred eeeeeeCCCc-EE-EEecCc--EEEEEEcCCCceeEEeeecCCCCCceeECCCCCEEEE-eCCCc---eEEeCC-CCeEE
Q 032726 56 DVSVVVRKGA-LY-TATNDG--WVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVVIC-DSKKV---RQHTNS-QALII 126 (135)
Q Consensus 56 di~avd~~G~-lY-Tg~~dG--~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~LiVa-Da~~G---Ll~V~~-~G~v~ 126 (135)
+. .+.+||+ ++ ++..+| .|++++.+++..+.....++.- ...+|+++|+.++. ....| |..++. +|..+
T Consensus 288 ~~-~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~-~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~ 365 (427)
T PRK02889 288 EP-FFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYN-TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT 365 (427)
T ss_pred Ce-EEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCc-CceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE
Confidence 45 4677885 54 444444 5777765444444443333333 46678888876543 32322 666663 35544
Q ss_pred EE
Q 032726 127 VC 128 (135)
Q Consensus 127 vl 128 (135)
.+
T Consensus 366 ~l 367 (427)
T PRK02889 366 AL 367 (427)
T ss_pred Ec
Confidence 43
No 99
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=61.94 E-value=70 Score=27.99 Aligned_cols=65 Identities=8% Similarity=0.005 Sum_probs=43.3
Q ss_pred eeeeeeCCCcEEEEecCcEEEEEEcCCCc-ee--EEee----ecCCCCCceeECCCCCEEEEeCCCceEEeCCCC
Q 032726 56 DVSVVVRKGALYTATNDGWVKYFILHNET-LV--NWKH----IDSQSLLGLTTTKEGDVVICDSKKVRQHTNSQA 123 (135)
Q Consensus 56 di~avd~~G~lYTg~~dG~I~ri~~~~~~-~~--~~~~----t~GRPpLGl~fd~~G~LiVaDa~~GLl~V~~~G 123 (135)
++ .++.+|.++...++|.|++-.. ++. ++ .|.. ..+..++++.|..+++++ +-...|++....||
T Consensus 285 ~v-~~~~dg~l~l~g~~G~l~~S~d-~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~-a~G~~G~v~~s~D~ 356 (398)
T PLN00033 285 NM-GWRADGGLWLLTRGGGLYVSKG-TGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAW-AAGGSGILLRSTDG 356 (398)
T ss_pred ee-eEcCCCCEEEEeCCceEEEecC-CCCcccccceeecccCCCCcceEEEEEcCCCcEE-EEECCCcEEEeCCC
Confidence 56 4667899999999999988754 332 22 3332 233334788898888876 55677877776553
No 100
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=61.83 E-value=19 Score=34.57 Aligned_cols=62 Identities=11% Similarity=0.169 Sum_probs=43.6
Q ss_pred eeeCCCcEEEEecCcEEEEEEcCCCceeEEeeecCCCCCceeECCCCCEEEEeCCCceEEeC
Q 032726 59 VVVRKGALYTATNDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVVICDSKKVRQHTN 120 (135)
Q Consensus 59 avd~~G~lYTg~~dG~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~LiVaDa~~GLl~V~ 120 (135)
+-+.+|.|-.|+.+|.|.-++..+.+....-+--|-|..||....||+-++|-+..=|+-++
T Consensus 584 aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~ 645 (794)
T PF08553_consen 584 ATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLID 645 (794)
T ss_pred EecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence 45588999999999999877542223333334458898999999999977755555455544
No 101
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=61.48 E-value=25 Score=19.13 Aligned_cols=26 Identities=19% Similarity=0.343 Sum_probs=20.0
Q ss_pred CCCceeeeeeCCC-cEEEEecCcEEEEE
Q 032726 52 SHPEDVSVVVRKG-ALYTATNDGWVKYF 78 (135)
Q Consensus 52 ~GPEdi~avd~~G-~lYTg~~dG~I~ri 78 (135)
..-.++ .+.+++ .+.||..||.|.-+
T Consensus 12 ~~i~~i-~~~~~~~~~~s~~~D~~i~vw 38 (39)
T PF00400_consen 12 SSINSI-AWSPDGNFLASGSSDGTIRVW 38 (39)
T ss_dssp SSEEEE-EEETTSSEEEEEETTSEEEEE
T ss_pred CcEEEE-EEecccccceeeCCCCEEEEE
Confidence 445678 577775 79999999999765
No 102
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=60.65 E-value=54 Score=26.36 Aligned_cols=66 Identities=14% Similarity=0.002 Sum_probs=42.1
Q ss_pred CCCceeeeeeCCCcEEEEec---CcEEEEEEcCCCceeEEeeecCCCCCceeECCCCCEEEEeCCCceEEeC
Q 032726 52 SHPEDVSVVVRKGALYTATN---DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVVICDSKKVRQHTN 120 (135)
Q Consensus 52 ~GPEdi~avd~~G~lYTg~~---dG~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~LiVaDa~~GLl~V~ 120 (135)
.++++. ++..+|..+.... ++.-++.-..++...... ++++ +..-.||.+|.+++++......++-
T Consensus 24 ~~~~s~-AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~-l~~PS~d~~g~~W~v~~~~~~~~~~ 92 (253)
T PF10647_consen 24 YDVTSP-AVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGS-LTRPSWDPDGWVWTVDDGSGGVRVV 92 (253)
T ss_pred ccccce-EECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCc-cccccccCCCCEEEEEcCCCceEEE
Confidence 378888 6888888776666 555555544344333322 4444 3777899999998887655554443
No 103
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=59.86 E-value=21 Score=30.40 Aligned_cols=52 Identities=19% Similarity=0.115 Sum_probs=33.9
Q ss_pred eeCCCcEEEEe----------cCcEEEEEEcCCCceeEEeeecCCCCCceeECCC-CCEEEEeCC
Q 032726 60 VVRKGALYTAT----------NDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKE-GDVVICDSK 113 (135)
Q Consensus 60 vd~~G~lYTg~----------~dG~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~-G~LiVaDa~ 113 (135)
+|++|+.|.|+ ..|.++++.. +++.+.+-+.-|-| -||++|.+ -..|+.|+.
T Consensus 116 vdP~Gryy~GtMad~~~~le~~~g~Ly~~~~-~h~v~~i~~~v~Is-Ngl~Wd~d~K~fY~iDsl 178 (310)
T KOG4499|consen 116 VDPDGRYYGGTMADFGDDLEPIGGELYSWLA-GHQVELIWNCVGIS-NGLAWDSDAKKFYYIDSL 178 (310)
T ss_pred cCCCCceeeeeeccccccccccccEEEEecc-CCCceeeehhccCC-ccccccccCcEEEEEccC
Confidence 46666666664 2466666644 55566555666777 89999954 357888764
No 104
>PTZ00421 coronin; Provisional
Probab=59.85 E-value=53 Score=29.37 Aligned_cols=61 Identities=18% Similarity=0.169 Sum_probs=35.7
Q ss_pred ceeeeeeC-CC-cEEEEecCcEEEEEEcCCCce--------eEEeeecCCCCCceeECCCC-CEEEEeCCCceE
Q 032726 55 EDVSVVVR-KG-ALYTATNDGWVKYFILHNETL--------VNWKHIDSQSLLGLTTTKEG-DVVICDSKKVRQ 117 (135)
Q Consensus 55 Edi~avd~-~G-~lYTg~~dG~I~ri~~~~~~~--------~~~~~t~GRPpLGl~fd~~G-~LiVaDa~~GLl 117 (135)
-++ .+++ ++ .++||..||.|.-|+.+++.. ..+..-.++. ..++|++++ ++++.-+.-|-+
T Consensus 79 ~~v-~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V-~~l~f~P~~~~iLaSgs~DgtV 150 (493)
T PTZ00421 79 IDV-AFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKV-GIVSFHPSAMNVLASAGADMVV 150 (493)
T ss_pred EEE-EEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcE-EEEEeCcCCCCEEEEEeCCCEE
Confidence 366 5766 55 699999999998776533221 1121112334 678898765 565544444433
No 105
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=59.51 E-value=28 Score=19.14 Aligned_cols=34 Identities=24% Similarity=0.224 Sum_probs=22.6
Q ss_pred eccCCcCCCceeeeeeC-CCcEEEEec-CcEEEEEEc
Q 032726 46 LGEGCVSHPEDVSVVVR-KGALYTATN-DGWVKYFIL 80 (135)
Q Consensus 46 l~~g~~~GPEdi~avd~-~G~lYTg~~-dG~I~ri~~ 80 (135)
+....+.-|+.+ ++|. ++.+|-... .+.|.|.+-
T Consensus 3 ~~~~~~~~~~~l-a~d~~~~~lYw~D~~~~~I~~~~~ 38 (43)
T smart00135 3 LLSEGLGHPNGL-AVDWIEGRLYWTDWGLDVIEVANL 38 (43)
T ss_pred EEECCCCCcCEE-EEeecCCEEEEEeCCCCEEEEEeC
Confidence 344468899999 7995 457886544 456666644
No 106
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=59.37 E-value=37 Score=29.40 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=20.2
Q ss_pred eeeeeeCCCcEEEEecCcEEEEEEcC
Q 032726 56 DVSVVVRKGALYTATNDGWVKYFILH 81 (135)
Q Consensus 56 di~avd~~G~lYTg~~dG~I~ri~~~ 81 (135)
|. +|-.+-.+|||..||.|.+++.+
T Consensus 59 ~c-~F~d~~~~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 59 DC-AFADESTIVTGGLDGQVRRYDLN 83 (323)
T ss_pred ee-eccCCceEEEeccCceEEEEEec
Confidence 55 45556689999999999999874
No 107
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=58.03 E-value=31 Score=30.36 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=31.7
Q ss_pred CCCcEEEEecCcEEEEEEcCCCceeEEe-eecCCCCCc--eeECCCCCEEEEeCC
Q 032726 62 RKGALYTATNDGWVKYFILHNETLVNWK-HIDSQSLLG--LTTTKEGDVVICDSK 113 (135)
Q Consensus 62 ~~G~lYTg~~dG~I~ri~~~~~~~~~~~-~t~GRPpLG--l~fd~~G~LiVaDa~ 113 (135)
.++.+|.|+.||+|+-++..+|+ +.|. +++++- .+ +.+..+|++||+...
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~-~lW~~~~~~~~-~a~P~~~~~~g~~yv~~~~ 457 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGK-ELWKFRTPSGI-QATPMTYEVNGKQYVGVMV 457 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCc-eeeEEECCCCc-eEcCEEEEeCCEEEEEEEe
Confidence 46799999999999999875554 3332 332211 11 234567888886543
No 108
>PRK00178 tolB translocation protein TolB; Provisional
Probab=57.91 E-value=1.1e+02 Score=25.67 Aligned_cols=71 Identities=14% Similarity=0.063 Sum_probs=40.5
Q ss_pred eeeeeeCCCc-E-EEEecCc--EEEEEEcCCCceeEEeeecCCCCCceeECCCCCEEEEeCC----CceEEeCC-CCeEE
Q 032726 56 DVSVVVRKGA-L-YTATNDG--WVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVVICDSK----KVRQHTNS-QALII 126 (135)
Q Consensus 56 di~avd~~G~-l-YTg~~dG--~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~LiVaDa~----~GLl~V~~-~G~v~ 126 (135)
+. .+.+||+ + |+...+| .|+.++..++..+.+....+.. ....|+++|+-++.-+. .-++.++. +|.++
T Consensus 247 ~~-~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~-~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~ 324 (430)
T PRK00178 247 AP-AWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAID-TEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE 324 (430)
T ss_pred Ce-EECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCc-CCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 35 5778884 4 4666666 6888877555444443333333 45678888874443232 23666664 45555
Q ss_pred EE
Q 032726 127 VC 128 (135)
Q Consensus 127 vl 128 (135)
.+
T Consensus 325 ~l 326 (430)
T PRK00178 325 RV 326 (430)
T ss_pred Ee
Confidence 44
No 109
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=57.87 E-value=51 Score=29.14 Aligned_cols=65 Identities=11% Similarity=0.122 Sum_probs=29.9
Q ss_pred eeCCCcEEEEecCcEEEEEEcCCCceeEEeeecCCC---CCceeECCCCCEEEEeC--------------CCceEEeCCC
Q 032726 60 VVRKGALYTATNDGWVKYFILHNETLVNWKHIDSQS---LLGLTTTKEGDVVICDS--------------KKVRQHTNSQ 122 (135)
Q Consensus 60 vd~~G~lYTg~~dG~I~ri~~~~~~~~~~~~t~GRP---pLGl~fd~~G~LiVaDa--------------~~GLl~V~~~ 122 (135)
.-++|.++.+.. .++.+++. .|+........+.. =--+.++++||+++..+ .-.++.||++
T Consensus 155 ~l~nG~ll~~~~-~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~t 232 (477)
T PF05935_consen 155 QLPNGNLLIGSG-NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPT 232 (477)
T ss_dssp E-TTS-EEEEEB-TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TT
T ss_pred EcCCCCEEEecC-CceEEEcC-CCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCC
Confidence 446677776666 66666755 34422112222211 02334458999887666 4468888887
Q ss_pred CeEE
Q 032726 123 ALII 126 (135)
Q Consensus 123 G~v~ 126 (135)
|+|.
T Consensus 233 G~vv 236 (477)
T PF05935_consen 233 GEVV 236 (477)
T ss_dssp S-EE
T ss_pred CCEE
Confidence 8764
No 110
>PRK01742 tolB translocation protein TolB; Provisional
Probab=57.73 E-value=1e+02 Score=26.40 Aligned_cols=70 Identities=10% Similarity=0.015 Sum_probs=38.8
Q ss_pred eeeeeeCCCc-E-EEEecC--cEEEEEEcCCCceeEEeeecCCCCCceeECCCCCEEE-EeCCCc---eEEeCCC-CeEE
Q 032726 56 DVSVVVRKGA-L-YTATND--GWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVVI-CDSKKV---RQHTNSQ-ALII 126 (135)
Q Consensus 56 di~avd~~G~-l-YTg~~d--G~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~LiV-aDa~~G---Ll~V~~~-G~v~ 126 (135)
+. .+.+||+ + |++..+ ..|+.++..++..+.+....|.- ...+|+++|+.++ +-...| |+.++.+ |.++
T Consensus 208 ~p-~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~-~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~ 285 (429)
T PRK01742 208 SP-AWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN-GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS 285 (429)
T ss_pred cc-eEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc-CceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE
Confidence 45 4678884 4 444333 36888876444444454444544 5678888887443 322233 5666643 4444
Q ss_pred E
Q 032726 127 V 127 (135)
Q Consensus 127 v 127 (135)
.
T Consensus 286 ~ 286 (429)
T PRK01742 286 Q 286 (429)
T ss_pred e
Confidence 3
No 111
>PRK00178 tolB translocation protein TolB; Provisional
Probab=57.43 E-value=82 Score=26.57 Aligned_cols=67 Identities=6% Similarity=-0.017 Sum_probs=37.8
Q ss_pred eeeCCCc-E-EEEecCc--EEEEEEcCCCceeEEeeecCCCCCceeECCCCCEEE--Ee--CCCceEEeCCC-CeEE
Q 032726 59 VVVRKGA-L-YTATNDG--WVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVVI--CD--SKKVRQHTNSQ-ALII 126 (135)
Q Consensus 59 avd~~G~-l-YTg~~dG--~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~LiV--aD--a~~GLl~V~~~-G~v~ 126 (135)
.+.+||+ | |+...+| .|+.++..++..+.+....|.- -..+|+++|+.++ .+ ...-|+.+|.+ |.++
T Consensus 205 ~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~-~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~ 280 (430)
T PRK00178 205 RWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLN-GAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS 280 (430)
T ss_pred eECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCc-CCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence 4667884 4 6665554 5888877555555554444544 4677888886433 22 11236666643 4443
No 112
>PF15018 InaF-motif: TRP-interacting helix
Probab=57.38 E-value=12 Score=22.67 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhhhCCCCcc
Q 032726 6 FLLACLLAFTLQFFFSPPVSS 26 (135)
Q Consensus 6 ~~~~~~la~~~~l~~~~pi~P 26 (135)
-+++..|+++|.++|.+...|
T Consensus 18 Sl~Ai~LsiYY~f~W~p~~~p 38 (38)
T PF15018_consen 18 SLAAIVLSIYYIFFWDPDMPP 38 (38)
T ss_pred HHHHHHHHHHHheeeCCCCCC
Confidence 345677888999999766554
No 113
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=56.61 E-value=81 Score=29.22 Aligned_cols=65 Identities=9% Similarity=0.053 Sum_probs=47.1
Q ss_pred CCCceeeeeeC-CCcEEEEecCcEEEEEEcCCCceeEEeeecCCCCCceeECCCCCEEEEeCCCceEEe
Q 032726 52 SHPEDVSVVVR-KGALYTATNDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVVICDSKKVRQHT 119 (135)
Q Consensus 52 ~GPEdi~avd~-~G~lYTg~~dG~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~LiVaDa~~GLl~V 119 (135)
..+=+. +.++ +-.+..|+.||-|+=++. +.+...++...=.| -=++++++|.+++.-..+|=++.
T Consensus 260 s~v~~c-a~sp~E~kLvlGC~DgSiiLyD~-~~~~t~~~ka~~~P-~~iaWHp~gai~~V~s~qGelQ~ 325 (545)
T PF11768_consen 260 SQVICC-ARSPSEDKLVLGCEDGSIILYDT-TRGVTLLAKAEFIP-TLIAWHPDGAIFVVGSEQGELQC 325 (545)
T ss_pred CcceEE-ecCcccceEEEEecCCeEEEEEc-CCCeeeeeeecccc-eEEEEcCCCcEEEEEcCCceEEE
Confidence 345566 5664 458999999999999976 44445555555556 78999999998877777776553
No 114
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=56.05 E-value=24 Score=28.93 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=35.2
Q ss_pred eeeeeeCCC--cEEEEecC-cEEE--EEEcCCCce-eEEeeecCCCCCceeECCCCCEEEEeCCC
Q 032726 56 DVSVVVRKG--ALYTATND-GWVK--YFILHNETL-VNWKHIDSQSLLGLTTTKEGDVVICDSKK 114 (135)
Q Consensus 56 di~avd~~G--~lYTg~~d-G~I~--ri~~~~~~~-~~~~~t~GRPpLGl~fd~~G~LiVaDa~~ 114 (135)
|+ ++|+.| -||+...+ |.|+ |+++.+-.. +.|.-.+=++=.|=+|--.|-||+.|...
T Consensus 127 D~-AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~~~k~~~~naFmvCGvLY~~~s~~ 190 (250)
T PF02191_consen 127 DF-AVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTSYPKRSAGNAFMVCGVLYATDSYD 190 (250)
T ss_pred EE-EEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEeccCchhhcceeeEeeEEEEEEECC
Confidence 78 699999 59988875 4554 565533232 44544444443566666666666665543
No 115
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=55.90 E-value=41 Score=31.22 Aligned_cols=69 Identities=19% Similarity=0.214 Sum_probs=42.5
Q ss_pred cCCC---ceeeeeeCCC-cEEEEecCcEEEEEEcC-CC-----c-e----eE-EeeecCCCCCceeECC-CCCEEEEeCC
Q 032726 51 VSHP---EDVSVVVRKG-ALYTATNDGWVKYFILH-NE-----T-L----VN-WKHIDSQSLLGLTTTK-EGDVVICDSK 113 (135)
Q Consensus 51 ~~GP---Edi~avd~~G-~lYTg~~dG~I~ri~~~-~~-----~-~----~~-~~~t~GRPpLGl~fd~-~G~LiVaDa~ 113 (135)
..|| +.+ ..+| .+|+|..||.|.-|..+ +. . . .. ..+++-+ -+++++. ..+|+.|++.
T Consensus 343 H~gPVl~v~v---~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdav--w~l~~s~~~~~Llscs~D 417 (577)
T KOG0642|consen 343 HEGPVLCVVV---PSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAV--WLLALSSTKDRLLSCSSD 417 (577)
T ss_pred ccCceEEEEe---cCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccce--eeeeecccccceeeecCC
Confidence 5788 555 3555 79999999999777332 11 1 0 11 1233332 3788874 4579999887
Q ss_pred CceEEeCCCCe
Q 032726 114 KVRQHTNSQAL 124 (135)
Q Consensus 114 ~GLl~V~~~G~ 124 (135)
--+.-.++.+.
T Consensus 418 gTvr~w~~~~~ 428 (577)
T KOG0642|consen 418 GTVRLWEPTEE 428 (577)
T ss_pred ceEEeeccCCc
Confidence 76666665443
No 116
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=55.32 E-value=11 Score=26.73 Aligned_cols=11 Identities=64% Similarity=0.824 Sum_probs=6.9
Q ss_pred CchhHHHHHHH
Q 032726 1 MAPKSFLLACL 11 (135)
Q Consensus 1 ~~~~~~~~~~~ 11 (135)
||.+.||++++
T Consensus 1 MaSK~~llL~l 11 (95)
T PF07172_consen 1 MASKAFLLLGL 11 (95)
T ss_pred CchhHHHHHHH
Confidence 88776665443
No 117
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=54.21 E-value=29 Score=33.00 Aligned_cols=66 Identities=21% Similarity=0.337 Sum_probs=47.0
Q ss_pred ceEeccCCcCCC-ceeeeeeCCC-cEEEEecCcEEEEEEcCCCce--eEEeeecCCCCCceeECCCCCEEEEeC
Q 032726 43 LIKLGEGCVSHP-EDVSVVVRKG-ALYTATNDGWVKYFILHNETL--VNWKHIDSQSLLGLTTTKEGDVVICDS 112 (135)
Q Consensus 43 ~e~l~~g~~~GP-Edi~avd~~G-~lYTg~~dG~I~ri~~~~~~~--~~~~~t~GRPpLGl~fd~~G~LiVaDa 112 (135)
..+|+.|- .|| +++ ++.++| .+-+|..||.|+-|+-.+++. +...+ -|-- --|.|..+|+++|.++
T Consensus 569 ~VRiF~GH-~~~V~al-~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H-t~ti-~SlsFS~dg~vLasgg 638 (707)
T KOG0263|consen 569 SVRIFTGH-KGPVTAL-AFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH-TGTI-YSLSFSRDGNVLASGG 638 (707)
T ss_pred EEEEecCC-CCceEEE-EEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc-cCce-eEEEEecCCCEEEecC
Confidence 35688884 566 566 688998 589999999999998765542 23344 3433 6788999999887654
No 118
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=54.10 E-value=42 Score=30.00 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=53.2
Q ss_pred ceeeeeeCCCcEEEEecCcEEEEEEcCCCceeEEeeecCCCCCceeECCCCCEEEEeCCCceEEe-CC---CCeEEEE
Q 032726 55 EDVSVVVRKGALYTATNDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVVICDSKKVRQHT-NS---QALIIVC 128 (135)
Q Consensus 55 Edi~avd~~G~lYTg~~dG~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~LiVaDa~~GLl~V-~~---~G~v~vl 128 (135)
+++ .+++.+.+|++..|-.|++|+...++. .-..+|+.+++-+...+.-+|++|-+---.+++ || +|.+...
T Consensus 264 s~V-~w~d~~v~yS~SwDHTIk~WDletg~~-~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~ 339 (423)
T KOG0313|consen 264 SSV-VWSDATVIYSVSWDHTIKVWDLETGGL-KSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQ 339 (423)
T ss_pred eeE-EEcCCCceEeecccceEEEEEeecccc-eeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEE
Confidence 567 677788999999999999998754443 235788888888888888899988665555554 44 4665543
No 119
>PRK05137 tolB translocation protein TolB; Provisional
Probab=52.89 E-value=1.4e+02 Score=25.53 Aligned_cols=51 Identities=8% Similarity=0.031 Sum_probs=29.9
Q ss_pred eeeCCCc-EEEEe-cCc--EEEEEEcCCCceeEEeeecCCCCCceeECCCCCEEEE
Q 032726 59 VVVRKGA-LYTAT-NDG--WVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVVIC 110 (135)
Q Consensus 59 avd~~G~-lYTg~-~dG--~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~LiVa 110 (135)
.+.+||+ +++.. .+| .|+.++.+++..+.+....|+- -..++.++|+.++.
T Consensus 296 ~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~-~~~~~SpdG~~ia~ 350 (435)
T PRK05137 296 SYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRY-STPVWSPRGDLIAF 350 (435)
T ss_pred eEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcc-cCeEECCCCCEEEE
Confidence 4667774 54443 444 6888876444445444334444 45678888875544
No 120
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=52.88 E-value=24 Score=33.98 Aligned_cols=51 Identities=14% Similarity=0.255 Sum_probs=38.4
Q ss_pred eeeeeeCCC-cEEEEecCcEEEEEEcCCCceeEEeeecCCCCCceeECCCCCEE
Q 032726 56 DVSVVVRKG-ALYTATNDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVV 108 (135)
Q Consensus 56 di~avd~~G-~lYTg~~dG~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~Li 108 (135)
++ ++..+| .+|+|.+.|-.++|....++.+-+-..++ |.+++.+.++++++
T Consensus 256 ~L-~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs-~I~~i~vS~ds~~~ 307 (792)
T KOG1963|consen 256 SL-SFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGS-PILHIVVSPDSDLY 307 (792)
T ss_pred ee-EEecCCceEeecccceEEEEEeecCCCcccccccCC-eeEEEEEcCCCCeE
Confidence 45 466666 79999999999999875555444444444 67999999999865
No 121
>PRK02889 tolB translocation protein TolB; Provisional
Probab=52.80 E-value=92 Score=26.67 Aligned_cols=49 Identities=12% Similarity=0.073 Sum_probs=28.4
Q ss_pred eeeCCCc-E-EEEecCc--EEEEEEcCCCceeEEeeecCCCCCceeECCCCCEE
Q 032726 59 VVVRKGA-L-YTATNDG--WVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVV 108 (135)
Q Consensus 59 avd~~G~-l-YTg~~dG--~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~Li 108 (135)
.+.+||+ + |+...+| .|+.++..++....+....|.- ...+|+++|+-+
T Consensus 202 ~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~-~~~~~SPDG~~l 254 (427)
T PRK02889 202 AWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSN-SAPAWSPDGRTL 254 (427)
T ss_pred eEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCc-cceEECCCCCEE
Confidence 3567874 4 4444443 5888876555544444444544 566777777533
No 122
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=52.17 E-value=74 Score=27.69 Aligned_cols=71 Identities=15% Similarity=0.239 Sum_probs=46.3
Q ss_pred cCCcCCCceeeeeeCCC-cEEEEecCcEEEEEEcCCC-c-eeEEeeecCCCCCceeECCCCCEEEEeCCCceEEeC
Q 032726 48 EGCVSHPEDVSVVVRKG-ALYTATNDGWVKYFILHNE-T-LVNWKHIDSQSLLGLTTTKEGDVVICDSKKVRQHTN 120 (135)
Q Consensus 48 ~g~~~GPEdi~avd~~G-~lYTg~~dG~I~ri~~~~~-~-~~~~~~t~GRPpLGl~fd~~G~LiVaDa~~GLl~V~ 120 (135)
.+...+=-++ .+.++| .+-++..|+.|.-|+..+. . ...+.--.... ..+.|+++|++++.=.+-|..++=
T Consensus 200 ~~h~~~v~~~-~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v-~~~~f~p~g~~i~Sgs~D~tvriW 273 (456)
T KOG0266|consen 200 SGHTRGVSDV-AFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYV-TSVAFSPDGNLLVSGSDDGTVRIW 273 (456)
T ss_pred cccccceeee-EECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCce-EEEEecCCCCEEEEecCCCcEEEE
Confidence 4445566678 588888 6888999998877765222 2 23332112223 678899999888877777766654
No 123
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=52.11 E-value=23 Score=30.76 Aligned_cols=29 Identities=10% Similarity=0.078 Sum_probs=23.4
Q ss_pred CCCCEEEEeCCCc-eEEeCCC-CeEEEEEEE
Q 032726 103 KEGDVVICDSKKV-RQHTNSQ-ALIIVCVCV 131 (135)
Q Consensus 103 ~~G~LiVaDa~~G-Ll~V~~~-G~v~vl~~~ 131 (135)
.+|+||++|.+.| +.++|++ |+.++++-+
T Consensus 211 hdgrLwvldsgtGev~~vD~~~G~~e~Va~v 241 (335)
T TIGR03032 211 YQGKLWLLNSGRGELGYVDPQAGKFQPVAFL 241 (335)
T ss_pred eCCeEEEEECCCCEEEEEcCCCCcEEEEEEC
Confidence 4789999999988 4568886 999888654
No 124
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=51.86 E-value=87 Score=30.48 Aligned_cols=59 Identities=10% Similarity=0.054 Sum_probs=40.3
Q ss_pred CCcEEEEecCcEEEEE----EcCCCceeEEeeecCCCCCceeECCCCCEEE-EeCCCceEEeCCC
Q 032726 63 KGALYTATNDGWVKYF----ILHNETLVNWKHIDSQSLLGLTTTKEGDVVI-CDSKKVRQHTNSQ 122 (135)
Q Consensus 63 ~G~lYTg~~dG~I~ri----~~~~~~~~~~~~t~GRPpLGl~fd~~G~LiV-aDa~~GLl~V~~~ 122 (135)
...++.++++|.|+.+ +..+...|....+.+-= ..+++.+|+++++ +....=|+..+.+
T Consensus 87 ~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI-~a~~WSPD~Ella~vT~~~~l~~mt~~ 150 (928)
T PF04762_consen 87 SESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGI-LAASWSPDEELLALVTGEGNLLLMTRD 150 (928)
T ss_pred CCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcE-EEEEECCCcCEEEEEeCCCEEEEEecc
Confidence 4579999999999999 44334556666666555 8999999998754 4434344444443
No 125
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=51.40 E-value=45 Score=28.67 Aligned_cols=53 Identities=13% Similarity=0.079 Sum_probs=35.9
Q ss_pred CCcEEEEecCcEEEEEEcCCCc-eeEE-eeecCCCCCceeECCCCCEEEEeCCCce
Q 032726 63 KGALYTATNDGWVKYFILHNET-LVNW-KHIDSQSLLGLTTTKEGDVVICDSKKVR 116 (135)
Q Consensus 63 ~G~lYTg~~dG~I~ri~~~~~~-~~~~-~~t~GRPpLGl~fd~~G~LiVaDa~~GL 116 (135)
.+.+..|..|+|++|++-..+. .+.+ ..--| |.+-++|.++|++|.--+.-|-
T Consensus 236 k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~g-pVhcVrFSPdGE~yAsGSEDGT 290 (334)
T KOG0278|consen 236 KEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFG-PVHCVRFSPDGELYASGSEDGT 290 (334)
T ss_pred CceEEecCcceEEEEEeccCCceeeecccCCCC-ceEEEEECCCCceeeccCCCce
Confidence 4678889999999999874332 2222 11124 3478999999999976555553
No 126
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=50.80 E-value=72 Score=26.97 Aligned_cols=59 Identities=8% Similarity=0.072 Sum_probs=30.1
Q ss_pred CCCcEEEEecCcEEEEEEcCCC-ceeEEeeecCCCCCceeECCCCCEEEEeCCCceEEeCC
Q 032726 62 RKGALYTATNDGWVKYFILHNE-TLVNWKHIDSQSLLGLTTTKEGDVVICDSKKVRQHTNS 121 (135)
Q Consensus 62 ~~G~lYTg~~dG~I~ri~~~~~-~~~~~~~t~GRPpLGl~fd~~G~LiVaDa~~GLl~V~~ 121 (135)
+||++....+.|.+++-..+.. .++.......|+.=-|.|+++++|++.. .-|-++.++
T Consensus 154 ~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 154 SDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD 213 (302)
T ss_dssp TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred CCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence 4555555555555554432122 2555555455665788899999999877 555555554
No 127
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=50.17 E-value=51 Score=29.02 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=37.3
Q ss_pred CCcEEEE--ecCcEEEEEEcC---CCce--eE--EeeecCCCCCceeEC-CCCCEEEEeCCCceEEeCC
Q 032726 63 KGALYTA--TNDGWVKYFILH---NETL--VN--WKHIDSQSLLGLTTT-KEGDVVICDSKKVRQHTNS 121 (135)
Q Consensus 63 ~G~lYTg--~~dG~I~ri~~~---~~~~--~~--~~~t~GRPpLGl~fd-~~G~LiVaDa~~GLl~V~~ 121 (135)
+|.+|.- .++|++.++... ++.. +. --...+.| =|+..| ..|.|||++-..|+++.+-
T Consensus 169 ~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~-EGCVVDDe~g~LYvgEE~~GIW~y~A 236 (381)
T PF02333_consen 169 TGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQP-EGCVVDDETGRLYVGEEDVGIWRYDA 236 (381)
T ss_dssp T--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-E-EEEEEETTTTEEEEEETTTEEEEEES
T ss_pred CCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcc-eEEEEecccCCEEEecCccEEEEEec
Confidence 5666654 477888766441 2221 11 12456777 899998 6799999999999999983
No 128
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=50.15 E-value=1.5e+02 Score=24.53 Aligned_cols=62 Identities=8% Similarity=0.058 Sum_probs=34.9
Q ss_pred eeeCCCc-EE-EEecCc--EEEEEEcCCCceeEEeeecCCCCCceeECCCCCEEEEeCCC----ceEEeCC
Q 032726 59 VVVRKGA-LY-TATNDG--WVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVVICDSKK----VRQHTNS 121 (135)
Q Consensus 59 avd~~G~-lY-Tg~~dG--~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~LiVaDa~~----GLl~V~~ 121 (135)
.+.+||+ ++ ++..+| .|+.++..++..+.+...++.. ....++++|+.++.-... -++.++.
T Consensus 284 ~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~-~~~~~spdg~~i~~~~~~~~~~~i~~~d~ 353 (417)
T TIGR02800 284 SWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYN-ASPSWSPDGDLIAFVHREGGGFNIAVMDL 353 (417)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc-cCeEECCCCCEEEEEEccCCceEEEEEeC
Confidence 3566774 54 444444 6888876544444444334444 677888888755433222 2555554
No 129
>PRK01029 tolB translocation protein TolB; Provisional
Probab=49.47 E-value=1.7e+02 Score=25.26 Aligned_cols=71 Identities=7% Similarity=-0.004 Sum_probs=36.9
Q ss_pred eeeeeeCCCc--EEEEecCc--EEEEEEcCC--CceeEEeeecCCCCCceeECCCCCEEEEe-CC---CceEEeCC-CCe
Q 032726 56 DVSVVVRKGA--LYTATNDG--WVKYFILHN--ETLVNWKHIDSQSLLGLTTTKEGDVVICD-SK---KVRQHTNS-QAL 124 (135)
Q Consensus 56 di~avd~~G~--lYTg~~dG--~I~ri~~~~--~~~~~~~~t~GRPpLGl~fd~~G~LiVaD-a~---~GLl~V~~-~G~ 124 (135)
+. .+.+||+ .|+...+| +|++++.+. +..+.+....+.. --..+.++|+.++.- .. .-|..+|. .|.
T Consensus 285 ~p-~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~-~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~ 362 (428)
T PRK01029 285 NP-SFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNS-SCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR 362 (428)
T ss_pred Ce-EECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCc-cceeECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 45 4778885 45555677 577775422 2233333323333 456788888754432 22 22555564 355
Q ss_pred EEEE
Q 032726 125 IIVC 128 (135)
Q Consensus 125 v~vl 128 (135)
.+.|
T Consensus 363 ~~~L 366 (428)
T PRK01029 363 DYQL 366 (428)
T ss_pred eEEc
Confidence 5444
No 130
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=49.40 E-value=78 Score=30.21 Aligned_cols=22 Identities=18% Similarity=0.040 Sum_probs=18.9
Q ss_pred CCCcEEEEecCcEEEEEEcCCC
Q 032726 62 RKGALYTATNDGWVKYFILHNE 83 (135)
Q Consensus 62 ~~G~lYTg~~dG~I~ri~~~~~ 83 (135)
.+|.+|.++.+|+|+.++..+|
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TG 214 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATG 214 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCC
Confidence 3789999999999999987544
No 131
>PRK01029 tolB translocation protein TolB; Provisional
Probab=49.17 E-value=1.7e+02 Score=25.36 Aligned_cols=71 Identities=4% Similarity=-0.108 Sum_probs=41.9
Q ss_pred eeeeeeCCCc--EEEEecCc--EEEEEEcCCCceeEEeeecCCCCCceeECCCCCEEEEeC----CCceEEeCCC-CeEE
Q 032726 56 DVSVVVRKGA--LYTATNDG--WVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVVICDS----KKVRQHTNSQ-ALII 126 (135)
Q Consensus 56 di~avd~~G~--lYTg~~dG--~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~LiVaDa----~~GLl~V~~~-G~v~ 126 (135)
+. .+.+||+ .|++..+| .|+.++..++..+.+....+.. -...+.++|+.++.-+ ..-|+.++.+ |..+
T Consensus 331 ~p-~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~-~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 331 CP-AWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENK-ESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR 408 (428)
T ss_pred ce-eECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCc-cceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 44 4667885 45555444 6888876555555544333343 5678889998655422 2457788864 5555
Q ss_pred EE
Q 032726 127 VC 128 (135)
Q Consensus 127 vl 128 (135)
.|
T Consensus 409 ~L 410 (428)
T PRK01029 409 KI 410 (428)
T ss_pred Ee
Confidence 44
No 132
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=49.08 E-value=86 Score=29.22 Aligned_cols=31 Identities=10% Similarity=0.176 Sum_probs=21.1
Q ss_pred ceeECCCCC-EEEEeCCCceEEeCC-CCeEEEE
Q 032726 98 GLTTTKEGD-VVICDSKKVRQHTNS-QALIIVC 128 (135)
Q Consensus 98 Gl~fd~~G~-LiVaDa~~GLl~V~~-~G~v~vl 128 (135)
.+..+++|. ++|+....-|+.+|- +|++++.
T Consensus 406 av~vs~dGK~~vvaNdr~el~vididngnv~~i 438 (668)
T COG4946 406 AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLI 438 (668)
T ss_pred EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEe
Confidence 344567776 677777777888884 5777654
No 133
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=48.95 E-value=87 Score=26.14 Aligned_cols=58 Identities=16% Similarity=0.144 Sum_probs=37.7
Q ss_pred EEecCcEEEEEEcCCCceeEEeeecCCCCCc--------eeECCCCCEEEEeCCCce-EEeCCCCeEE
Q 032726 68 TATNDGWVKYFILHNETLVNWKHIDSQSLLG--------LTTTKEGDVVICDSKKVR-QHTNSQALII 126 (135)
Q Consensus 68 Tg~~dG~I~ri~~~~~~~~~~~~t~GRPpLG--------l~fd~~G~LiVaDa~~GL-l~V~~~G~v~ 126 (135)
+....|+|+++++.+...+.....-..| -+ +..-++||.+|+.+..|- ..++++|++.
T Consensus 227 ~~~s~~~v~~ld~~~~~~~~~~~~~~~~-~~~~s~~~G~~Q~L~nGn~li~~g~~g~~~E~~~~G~vv 293 (299)
T PF14269_consen 227 TEPSRGLVLELDPETMTVTLVREYSDHP-DGFYSPSQGSAQRLPNGNVLIGWGNNGRISEFTPDGEVV 293 (299)
T ss_pred CcCCCceEEEEECCCCEEEEEEEeecCC-CcccccCCCcceECCCCCEEEecCCCceEEEECCCCCEE
Confidence 3456788999987544333222221122 22 345578999999999997 7889999763
No 134
>PRK02888 nitrous-oxide reductase; Validated
Probab=48.54 E-value=70 Score=30.16 Aligned_cols=70 Identities=13% Similarity=0.051 Sum_probs=44.3
Q ss_pred ccceEeccCCcCCCceeeeeeCCCc-EEEEec-CcEEEEEEcCCCc------------eeEEeeecCCCCCceeECCCCC
Q 032726 41 KDLIKLGEGCVSHPEDVSVVVRKGA-LYTATN-DGWVKYFILHNET------------LVNWKHIDSQSLLGLTTTKEGD 106 (135)
Q Consensus 41 ~~~e~l~~g~~~GPEdi~avd~~G~-lYTg~~-dG~I~ri~~~~~~------------~~~~~~t~GRPpLGl~fd~~G~ 106 (135)
.-...|..| ..|+.+ .+++||+ +|.+.. +..+-=|+..+-. ...-..+|=+| |-.+||.+|+
T Consensus 312 ~v~~yIPVG--KsPHGV-~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~ 387 (635)
T PRK02888 312 ALTRYVPVP--KNPHGV-NTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDGRGN 387 (635)
T ss_pred ceEEEEECC--CCccce-EECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-ceEEECCCCC
Confidence 445667787 699999 6999995 666644 4544444331111 11113457777 9999999999
Q ss_pred EEE---EeCCC
Q 032726 107 VVI---CDSKK 114 (135)
Q Consensus 107 LiV---aDa~~ 114 (135)
.|+ .|+.-
T Consensus 388 aytslf~dsqv 398 (635)
T PRK02888 388 AYTTLFLDSQI 398 (635)
T ss_pred EEEeEeeccee
Confidence 765 45543
No 135
>PRK12693 flgG flagellar basal body rod protein FlgG; Provisional
Probab=47.46 E-value=73 Score=25.85 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=25.3
Q ss_pred CCCceeeeeeCCCcEEEEecCcEEEEEEcCCCcee-----EEeeecCCCCCc
Q 032726 52 SHPEDVSVVVRKGALYTATNDGWVKYFILHNETLV-----NWKHIDSQSLLG 98 (135)
Q Consensus 52 ~GPEdi~avd~~G~lYTg~~dG~I~ri~~~~~~~~-----~~~~t~GRPpLG 98 (135)
-.|=|+ |++.+|.+..-+.+|.+. ++- +|... .+....|+|.|+
T Consensus 90 ~~~lD~-Ai~G~GfF~v~~~~G~~~-yTR-~G~F~~d~~G~Lvt~~G~~vl~ 138 (261)
T PRK12693 90 GNSLDV-AIEGQGFFQVQLPDGTIA-YTR-DGSFKLDQDGQLVTSGGYPLQP 138 (261)
T ss_pred CCcceE-EECCCcEEEEEcCCCCeE-Eee-CCCeeECCCCCEECCCCCEEee
Confidence 467788 687777666666677643 322 33211 234456777565
No 136
>PF08248 Tryp_FSAP: Tryptophyllin-3 skin active peptide; InterPro: IPR013266 PdT-3 or Tryptophyllin-3 peptide is a subfamily of the family Tryptophyllin and of the superfamily FSAP (Frog Skin Active Peptide). Originally identified in skin extracts of Neotropical leaf frogs, Phyllomedusa sp. This subfamily has an average length of 13 amino acids. The pharmacological activity of the tryptophyllins remains to be established [] but it seems that these peptides possess an action on liver protein synthesis and body weight []. It is thought to possesses insulin-releasing activity [].
Probab=44.12 E-value=12 Score=17.41 Aligned_cols=9 Identities=33% Similarity=0.992 Sum_probs=5.7
Q ss_pred hhCCCCccc
Q 032726 19 FFSPPVSSS 27 (135)
Q Consensus 19 ~~~~pi~P~ 27 (135)
||+.||-|+
T Consensus 4 fw~ppiyp~ 12 (12)
T PF08248_consen 4 FWPPPIYPV 12 (12)
T ss_pred cCCCCcccC
Confidence 577777553
No 137
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=43.96 E-value=1.2e+02 Score=27.14 Aligned_cols=51 Identities=16% Similarity=0.231 Sum_probs=34.5
Q ss_pred eeCCCcEEEEecCcEEEEEEcCCCceeEEeeecCC-CCCceeECCCCCEEEEe
Q 032726 60 VVRKGALYTATNDGWVKYFILHNETLVNWKHIDSQ-SLLGLTTTKEGDVVICD 111 (135)
Q Consensus 60 vd~~G~lYTg~~dG~I~ri~~~~~~~~~~~~t~GR-PpLGl~fd~~G~LiVaD 111 (135)
++.+-.+||++.||.|.+|+...|. ..+..+|-. +.|-++..++++++|--
T Consensus 335 w~~t~~l~t~c~~g~v~~wDaRtG~-l~~~y~GH~~~Il~f~ls~~~~~vvT~ 386 (399)
T KOG0296|consen 335 WLNTDYLLTACANGKVRQWDARTGQ-LKFTYTGHQMGILDFALSPQKRLVVTV 386 (399)
T ss_pred EcCcchheeeccCceEEeeeccccc-eEEEEecCchheeEEEEcCCCcEEEEe
Confidence 4455689999999999999775443 333444321 13677788888887643
No 138
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=43.25 E-value=33 Score=29.21 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=26.2
Q ss_pred CCCceeeeeeCCCcEEEEe-cCcEEEEEEcCCCc
Q 032726 52 SHPEDVSVVVRKGALYTAT-NDGWVKYFILHNET 84 (135)
Q Consensus 52 ~GPEdi~avd~~G~lYTg~-~dG~I~ri~~~~~~ 84 (135)
.=|..+ .+|.+|++|.++ +.|+|.|+++.+|.
T Consensus 212 ~~PDGm-~ID~eG~L~Va~~ng~~V~~~dp~tGK 244 (310)
T KOG4499|consen 212 LEPDGM-TIDTEGNLYVATFNGGTVQKVDPTTGK 244 (310)
T ss_pred CCCCcc-eEccCCcEEEEEecCcEEEEECCCCCc
Confidence 468889 699999999876 57899999886664
No 139
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=42.79 E-value=1e+02 Score=30.28 Aligned_cols=62 Identities=19% Similarity=0.256 Sum_probs=39.9
Q ss_pred eeeeeeCCCc-EEEEecCcEEEEEEcCCCce-eEEeeecCCCCCceeECCCCCEEEEeCCCceEEe
Q 032726 56 DVSVVVRKGA-LYTATNDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKEGDVVICDSKKVRQHT 119 (135)
Q Consensus 56 di~avd~~G~-lYTg~~dG~I~ri~~~~~~~-~~~~~t~GRPpLGl~fd~~G~LiVaDa~~GLl~V 119 (135)
++ +|+.+|. +-.|..|=.|+-++..+++. ..+....|-- |++.||++|++++.-+--|-+++
T Consensus 101 ~~-~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apV-l~l~~~p~~~fLAvss~dG~v~i 164 (933)
T KOG1274|consen 101 DL-AVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPV-LQLSYDPKGNFLAVSSCDGKVQI 164 (933)
T ss_pred EE-EEecCCcEEEeecCceeEEEEeccccchheeecccCCce-eeeeEcCCCCEEEEEecCceEEE
Confidence 45 6888885 55666666665555544433 3445556655 99999999998775555554443
No 140
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=42.32 E-value=98 Score=26.98 Aligned_cols=65 Identities=11% Similarity=0.203 Sum_probs=45.5
Q ss_pred eeeCCCc-EEEEecCcEEEEEEcCCCceeEEeee---cCCCCCceeECCCCCEEE-EeCCCceEEeCC-CCeE
Q 032726 59 VVVRKGA-LYTATNDGWVKYFILHNETLVNWKHI---DSQSLLGLTTTKEGDVVI-CDSKKVRQHTNS-QALI 125 (135)
Q Consensus 59 avd~~G~-lYTg~~dG~I~ri~~~~~~~~~~~~t---~GRPpLGl~fd~~G~LiV-aDa~~GLl~V~~-~G~v 125 (135)
.|+++|. +-||..|-.|+-|+. .+..+++... .|-- .+++|.++++.++ |-+.|-+...|. .|+.
T Consensus 54 ~F~P~gs~~aSgG~Dr~I~LWnv-~gdceN~~~lkgHsgAV-M~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~ 124 (338)
T KOG0265|consen 54 KFHPDGSCFASGGSDRAIVLWNV-YGDCENFWVLKGHSGAV-MELHGMRDGSHILSCGTDKTVRGWDAETGKR 124 (338)
T ss_pred EECCCCCeEeecCCcceEEEEec-cccccceeeecccccee-EeeeeccCCCEEEEecCCceEEEEeccccee
Confidence 3667884 778899999999976 5556664322 2555 7889999997544 777777777774 3543
No 141
>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=42.03 E-value=1.1e+02 Score=24.98 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=11.5
Q ss_pred CCceeeeeeCCCcEEEEecCc
Q 032726 53 HPEDVSVVVRKGALYTATNDG 73 (135)
Q Consensus 53 GPEdi~avd~~G~lYTg~~dG 73 (135)
.|=|+ +++.+|.+-.-..+|
T Consensus 77 ~~lDl-AI~G~GFF~V~~~~G 96 (238)
T PRK12690 77 GQFDF-AIEGEGFFMVETPQG 96 (238)
T ss_pred CceeE-EECCCcEEEEEcCCC
Confidence 56677 566556554444556
No 142
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=41.85 E-value=1.3e+02 Score=26.85 Aligned_cols=63 Identities=16% Similarity=0.178 Sum_probs=41.8
Q ss_pred CCCceeeeeeCCC-cEEEEecCcEEEEEEc-CCCc-eeEEe--eecCCCCCceeECCCCCEEEEeCCCc
Q 032726 52 SHPEDVSVVVRKG-ALYTATNDGWVKYFIL-HNET-LVNWK--HIDSQSLLGLTTTKEGDVVICDSKKV 115 (135)
Q Consensus 52 ~GPEdi~avd~~G-~lYTg~~dG~I~ri~~-~~~~-~~~~~--~t~GRPpLGl~fd~~G~LiVaDa~~G 115 (135)
.||=..-+|+++| .|-|++..|.|+|+.. ++++ ...|. ..|=+= .-|+|++++.++.|-+.-+
T Consensus 173 ~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~I-ySL~Fs~ds~~L~~sS~Te 240 (391)
T KOG2110|consen 173 KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSI-YSLSFSPDSQFLAASSNTE 240 (391)
T ss_pred CCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEE-EEEEECCCCCeEEEecCCC
Confidence 3443433688999 5889999999999754 2332 23332 234444 6789999999888876554
No 143
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=41.28 E-value=1.6e+02 Score=27.51 Aligned_cols=76 Identities=18% Similarity=0.158 Sum_probs=47.9
Q ss_pred ccceEeccCCcCCCceeeeeeCCCcEEEEecCcEEEEEEcCCCc-eeEEeeecCCCCCceeECCCCCEEEEeCCCceEEe
Q 032726 41 KDLIKLGEGCVSHPEDVSVVVRKGALYTATNDGWVKYFILHNET-LVNWKHIDSQSLLGLTTTKEGDVVICDSKKVRQHT 119 (135)
Q Consensus 41 ~~~e~l~~g~~~GPEdi~avd~~G~lYTg~~dG~I~ri~~~~~~-~~~~~~t~GRPpLGl~fd~~G~LiVaDa~~GLl~V 119 (135)
++.+.+..++-.||=-. +....+.||.|+..--|++=+.+++. .+.+.+ |+-++|++.+++.++++--+.-+.+++
T Consensus 318 ~k~r~~elPe~~G~iRt-v~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh--~delwgla~hps~~q~~T~gqdk~v~l 394 (626)
T KOG2106|consen 318 RKLRETELPEQFGPIRT-VAEGKGDILVGTTRNFILQGTLENGFTLTVQGH--GDELWGLATHPSKNQLLTCGQDKHVRL 394 (626)
T ss_pred cccccccCchhcCCeeE-EecCCCcEEEeeccceEEEeeecCCceEEEEec--ccceeeEEcCCChhheeeccCcceEEE
Confidence 33344455555777666 44455679999999999986553332 233333 444689999988877765555444443
No 144
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=41.16 E-value=42 Score=28.46 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=14.7
Q ss_pred cEEEEecCcEEEEEEcCC
Q 032726 65 ALYTATNDGWVKYFILHN 82 (135)
Q Consensus 65 ~lYTg~~dG~I~ri~~~~ 82 (135)
.+|.|...|.|||++..+
T Consensus 223 ~vYaGDl~GnlwR~dl~~ 240 (335)
T PF05567_consen 223 RVYAGDLGGNLWRFDLSS 240 (335)
T ss_dssp EEEEEETTSEEEEEE--T
T ss_pred EEEEEcCCCcEEEEECCC
Confidence 599999999999998744
No 145
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=40.78 E-value=79 Score=28.18 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=30.4
Q ss_pred EEEEecCcEEEEEEcCCCceeEEeeecCCCCCceeECCCCCEEEEeCCCceEEe
Q 032726 66 LYTATNDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVVICDSKKVRQHT 119 (135)
Q Consensus 66 lYTg~~dG~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~LiVaDa~~GLl~V 119 (135)
+|.-..||..+-+....|..|..-++--+-+.|++.++..||+.-=+.-||+++
T Consensus 452 iYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKL 505 (508)
T KOG0275|consen 452 IYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKL 505 (508)
T ss_pred EEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhh
Confidence 444444444444433333333332332333389999999999876666777664
No 146
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.69 E-value=68 Score=31.43 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=23.4
Q ss_pred CCcCCCceeeeeeC-CCcEEEEecCcEEEEEE
Q 032726 49 GCVSHPEDVSVVVR-KGALYTATNDGWVKYFI 79 (135)
Q Consensus 49 g~~~GPEdi~avd~-~G~lYTg~~dG~I~ri~ 79 (135)
....|+ ++..+++ .|.++.|++||+|+.++
T Consensus 21 ~~~~G~-~isc~~s~~~~vvigt~~G~V~~Ln 51 (933)
T KOG2114|consen 21 ENFVGN-AISCCSSSTGSVVIGTADGRVVILN 51 (933)
T ss_pred ccCCCC-ceeEEcCCCceEEEeeccccEEEec
Confidence 346676 6666774 56899999999999984
No 147
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.68 E-value=29 Score=29.97 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=25.9
Q ss_pred CcCCCceeeeeeCCCcEEEEecCcEEEEEEc
Q 032726 50 CVSHPEDVSVVVRKGALYTATNDGWVKYFIL 80 (135)
Q Consensus 50 ~~~GPEdi~avd~~G~lYTg~~dG~I~ri~~ 80 (135)
.+.+||.| +.|.+|+||-.+.=+.-+|+.+
T Consensus 282 dipqaEGi-amDd~g~lYIvSEPnlfy~F~~ 311 (316)
T COG3204 282 DIPQAEGI-AMDDDGNLYIVSEPNLFYRFTP 311 (316)
T ss_pred cCCCccee-EECCCCCEEEEecCCcceeccc
Confidence 57899999 7999999999998888888754
No 148
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=40.08 E-value=30 Score=30.81 Aligned_cols=25 Identities=28% Similarity=0.236 Sum_probs=20.2
Q ss_pred ceeeeeeCCC-cEEEEecCcEEEEEEc
Q 032726 55 EDVSVVVRKG-ALYTATNDGWVKYFIL 80 (135)
Q Consensus 55 Edi~avd~~G-~lYTg~~dG~I~ri~~ 80 (135)
+.+ -+|..| .+|||..+||++-+..
T Consensus 29 s~v-ef~~~Ge~LatGdkgGRVv~f~r 54 (433)
T KOG1354|consen 29 SAV-EFDHYGERLATGDKGGRVVLFER 54 (433)
T ss_pred eeE-EeecccceEeecCCCCeEEEeec
Confidence 356 478777 7999999999998854
No 149
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=39.72 E-value=1.1e+02 Score=26.62 Aligned_cols=62 Identities=13% Similarity=0.183 Sum_probs=37.8
Q ss_pred eEeccCCcCCCceeeeeeCCC-cEEEEecCcEEEEEEcCCCce-------eEEeeecCCCCCceeECCCCCEEEEeCC
Q 032726 44 IKLGEGCVSHPEDVSVVVRKG-ALYTATNDGWVKYFILHNETL-------VNWKHIDSQSLLGLTTTKEGDVVICDSK 113 (135)
Q Consensus 44 e~l~~g~~~GPEdi~avd~~G-~lYTg~~dG~I~ri~~~~~~~-------~~~~~t~GRPpLGl~fd~~G~LiVaDa~ 113 (135)
+++..|.+--=-++ -...|. +|.++++||+++-|+.-.... ..|..+|- |.++|+.+.|-..
T Consensus 48 rr~LkGH~~Ki~~~-~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA-------~sPSg~~VAcGGL 117 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAM-DWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCA-------YSPSGNFVACGGL 117 (343)
T ss_pred EEEecccccceeee-EecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEE-------ECCCCCeEEecCc
Confidence 35555533222244 233444 799999999999997633322 23566664 5579999887443
No 150
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=39.51 E-value=77 Score=28.47 Aligned_cols=65 Identities=11% Similarity=0.164 Sum_probs=43.8
Q ss_pred eeeeeeCCCcEEEEecCcEEEEEEcCCCce-eEE---e------eecCCCCCceeECCCC-CEEEEeCCCceEEeCCCC
Q 032726 56 DVSVVVRKGALYTATNDGWVKYFILHNETL-VNW---K------HIDSQSLLGLTTTKEG-DVVICDSKKVRQHTNSQA 123 (135)
Q Consensus 56 di~avd~~G~lYTg~~dG~I~ri~~~~~~~-~~~---~------~t~GRPpLGl~fd~~G-~LiVaDa~~GLl~V~~~G 123 (135)
.+ .+..||-+.+|..+|-|+.++-.++.. +.. . ...| .+--.||++| +||-|.|.|-+-....|-
T Consensus 365 tl-~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEag--I~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 365 TL-SVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAG--IFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred ee-eeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccc--eeEEeecccCceEEeccCCcceEEEeccc
Confidence 45 466899999999999999997755431 211 1 1112 1345699888 688899998776655443
No 151
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=39.38 E-value=1.1e+02 Score=28.72 Aligned_cols=53 Identities=17% Similarity=0.261 Sum_probs=34.0
Q ss_pred eeeCCC-cEEEEecCcEEEEEEcCCC---c---eeEEeeecCCCCCceeECCCCCEEEEeC
Q 032726 59 VVVRKG-ALYTATNDGWVKYFILHNE---T---LVNWKHIDSQSLLGLTTTKEGDVVICDS 112 (135)
Q Consensus 59 avd~~G-~lYTg~~dG~I~ri~~~~~---~---~~~~~~t~GRPpLGl~fd~~G~LiVaDa 112 (135)
++|+.| ++|||..|-.|.-|+. .+ + -..+..+.+.+---++|..+|+.|+|-.
T Consensus 174 ~~Dp~GaR~~sGs~Dy~v~~wDf-~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs 233 (641)
T KOG0772|consen 174 AVDPSGARFVSGSLDYTVKFWDF-QGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS 233 (641)
T ss_pred eecCCCceeeeccccceEEEEec-ccccccchhhhccCcccccccceeeecCCCCeEEEEe
Confidence 588888 8999999999988876 33 1 1223445555544566666665544433
No 152
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=38.97 E-value=1.2e+02 Score=26.49 Aligned_cols=60 Identities=12% Similarity=0.227 Sum_probs=45.9
Q ss_pred eCCCcEEEEecCcEEEEEEcCCCc-eeEEeeecCCCCCceeECC-CCCEEE---EeCCCceEEeCC
Q 032726 61 VRKGALYTATNDGWVKYFILHNET-LVNWKHIDSQSLLGLTTTK-EGDVVI---CDSKKVRQHTNS 121 (135)
Q Consensus 61 d~~G~lYTg~~dG~I~ri~~~~~~-~~~~~~t~GRPpLGl~fd~-~G~LiV---aDa~~GLl~V~~ 121 (135)
-.|+.|.||+-|....-|+-+.+. ...|.--.|-- ++|.+.+ ++|.|| ||++-=|+-+..
T Consensus 154 ~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV-~slsl~p~~~ntFvSg~cD~~aklWD~R~ 218 (343)
T KOG0286|consen 154 LDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDV-MSLSLSPSDGNTFVSGGCDKSAKLWDVRS 218 (343)
T ss_pred cCCCceEecCCCceEEEEEcccceEEEEecCCcccE-EEEecCCCCCCeEEecccccceeeeeccC
Confidence 358999999999999988775554 35555445666 8999998 899998 888776766554
No 153
>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=38.80 E-value=1.9e+02 Score=23.62 Aligned_cols=67 Identities=19% Similarity=0.306 Sum_probs=34.7
Q ss_pred CCCceeeeeeCCCcEEEEecCcEEEEEEcCCCce-----eEEeeecCCCCCceeECCCCCEEEEeCCCceEEeCCCCeEE
Q 032726 52 SHPEDVSVVVRKGALYTATNDGWVKYFILHNETL-----VNWKHIDSQSLLGLTTTKEGDVVICDSKKVRQHTNSQALII 126 (135)
Q Consensus 52 ~GPEdi~avd~~G~lYTg~~dG~I~ri~~~~~~~-----~~~~~t~GRPpLGl~fd~~G~LiVaDa~~GLl~V~~~G~v~ 126 (135)
-.|=|+ |++.+|.+-.-..||.+. ++- +|.. -.+....|+|.|| .+|.+.+ ... +=++|++||.|.
T Consensus 75 g~~lDl-AI~G~GFF~V~~~~G~~~-yTR-~G~F~~d~~G~Lvt~~G~~vlg----~~gpI~l-p~~-~~i~I~~dG~I~ 145 (246)
T PRK12640 75 GRPLDV-ALQGDGWLAVQAPDGSEA-YTR-NGSLQVDANGQLRTANGLPVLG----DGGPIAV-PPG-AKITIGADGTIS 145 (246)
T ss_pred CCcceE-EECCCcEEEEEcCCCCEE-EEe-CCCeeECCCCCEEcCCCCCccC----CCcceec-CCC-CCEEECCCCEEE
Confidence 467788 576666555555567443 322 3321 1234556777665 2333322 211 346667777664
Q ss_pred E
Q 032726 127 V 127 (135)
Q Consensus 127 v 127 (135)
+
T Consensus 146 ~ 146 (246)
T PRK12640 146 A 146 (246)
T ss_pred E
Confidence 4
No 154
>PRK12642 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=38.24 E-value=1.5e+02 Score=23.95 Aligned_cols=67 Identities=12% Similarity=0.122 Sum_probs=32.9
Q ss_pred CCCceeeeeeCCCcEEEEecCcEEEEEEcCCCce-----eEEeeecCCCCCceeECCCCCEEEEeCCCceEEeCCCCeEE
Q 032726 52 SHPEDVSVVVRKGALYTATNDGWVKYFILHNETL-----VNWKHIDSQSLLGLTTTKEGDVVICDSKKVRQHTNSQALII 126 (135)
Q Consensus 52 ~GPEdi~avd~~G~lYTg~~dG~I~ri~~~~~~~-----~~~~~t~GRPpLGl~fd~~G~LiVaDa~~GLl~V~~~G~v~ 126 (135)
..|=|+ +++.+|.+-.-..+|. +++- +|.. -.+....|.|.|| .+|+=|......+-++|++||.|.
T Consensus 74 g~~lDl-AI~G~GFF~V~~~~g~--~yTR-~G~F~~d~~G~Lvt~~G~~vl~----~~g~~I~ip~~~~~~~i~~dG~i~ 145 (241)
T PRK12642 74 GNPLDF-AVKGDAWFSFDTPAGQ--VYTR-DGRFTMTSTGELVSVTGYPVLD----AGGAPIQLNPGGGEPTIGADGAIY 145 (241)
T ss_pred CCcceE-EECCCcEEEEEcCCCC--EEEe-CCCeeECCCCCEECCCCCEecC----CCCCceEeCCCCCCceEcCCceEE
Confidence 356677 5766665555455663 2332 3321 1133445666444 334222333333457777777764
No 155
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=37.70 E-value=99 Score=27.82 Aligned_cols=49 Identities=16% Similarity=0.286 Sum_probs=30.2
Q ss_pred eeCCCcEEEEecCcEEEEEEcCCCceeEEe-eec----CCCCCceeECCCCCEEEEeC
Q 032726 60 VVRKGALYTATNDGWVKYFILHNETLVNWK-HID----SQSLLGLTTTKEGDVVICDS 112 (135)
Q Consensus 60 vd~~G~lYTg~~dG~I~ri~~~~~~~~~~~-~t~----GRPpLGl~fd~~G~LiVaDa 112 (135)
...+|.+|.|+.||.+.-++..+|+ +.|. .++ |-| +.|..+|++||+.+
T Consensus 469 ~t~g~lvf~g~~~G~l~a~D~~TGe-~lw~~~~g~~~~a~P---~ty~~~G~qYv~~~ 522 (527)
T TIGR03075 469 ATAGDLVFYGTLEGYFKAFDAKTGE-ELWKFKTGSGIVGPP---VTYEQDGKQYVAVL 522 (527)
T ss_pred EECCcEEEEECCCCeEEEEECCCCC-EeEEEeCCCCceecC---EEEEeCCEEEEEEE
Confidence 3455677888889988888775553 3332 222 233 34445788888765
No 156
>COG1218 CysQ 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase [Inorganic ion transport and metabolism]
Probab=37.43 E-value=36 Score=28.69 Aligned_cols=57 Identities=9% Similarity=-0.028 Sum_probs=43.8
Q ss_pred EEEEecCcEEEEEEcCCCceeE------E----e-eecCCCCCceeECC-CCCEEEEeCCCceEEeCCC
Q 032726 66 LYTATNDGWVKYFILHNETLVN------W----K-HIDSQSLLGLTTTK-EGDVVICDSKKVRQHTNSQ 122 (135)
Q Consensus 66 lYTg~~dG~I~ri~~~~~~~~~------~----~-~t~GRPpLGl~fd~-~G~LiVaDa~~GLl~V~~~ 122 (135)
.+...+.+|.|=++|-||+.+. | + --.|+|-||+-.-+ .|.+|.+....|..+...+
T Consensus 77 ~~~~~~~~rfWLiDPLDGTkeFi~~~~~faV~IaLie~g~Pvlgvv~~P~~~~~y~A~~g~g~~~~~~~ 145 (276)
T COG1218 77 WEERLHWDRFWLVDPLDGTKEFIKRNGDFAVNIALIENGVPVLGVVYAPETGKLYYAAAGGGAKREQSD 145 (276)
T ss_pred CCCcccCceEEEECCCcCcHHHhcCCCceEEEEEEEECCeeEEEEEecCCcccEEEEecCCceEEeccC
Confidence 5677788899999886664221 2 1 23499989999885 5899999999999999854
No 157
>PRK12689 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=37.38 E-value=2e+02 Score=23.54 Aligned_cols=66 Identities=17% Similarity=0.214 Sum_probs=33.5
Q ss_pred CCCceeeeeeCCCcEEEEecCcEEEEEEcCCCce-----eEEeeecCCCCCceeECCCCCEEEEeCCCceEEeCCCCeEE
Q 032726 52 SHPEDVSVVVRKGALYTATNDGWVKYFILHNETL-----VNWKHIDSQSLLGLTTTKEGDVVICDSKKVRQHTNSQALII 126 (135)
Q Consensus 52 ~GPEdi~avd~~G~lYTg~~dG~I~ri~~~~~~~-----~~~~~t~GRPpLGl~fd~~G~LiVaDa~~GLl~V~~~G~v~ 126 (135)
-.|=|+ +++.+|.+-.-..+|. +++- +|.. -.+....|+|.|| ..|.+. .....+=++|++||+|.
T Consensus 82 g~~lDl-AI~G~GFF~V~~~~G~--~yTR-~G~F~~d~~G~Lvt~~G~~vlg----~~gpI~-lp~~~~~i~I~~dG~I~ 152 (253)
T PRK12689 82 KNPLDV-AIDGDAFLAVQTPQGE--RYTR-DGALEINAQGQLVTSDGYPVLG----TGGPIT-FQPTDTGIAISPDGTVS 152 (253)
T ss_pred CCceeE-EECCCcEEEEEeCCCc--EEEe-CCceEECCCCCEEcCCCCEeec----CCCCeE-eCCCCCcEEECCCCeEE
Confidence 467788 5776665555555663 2432 3321 1234445777555 233332 32212346677777664
No 158
>PLN00181 protein SPA1-RELATED; Provisional
Probab=36.12 E-value=2.5e+02 Score=26.04 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=19.4
Q ss_pred eeeeeeC-CC-cEEEEecCcEEEEEEcCCC
Q 032726 56 DVSVVVR-KG-ALYTATNDGWVKYFILHNE 83 (135)
Q Consensus 56 di~avd~-~G-~lYTg~~dG~I~ri~~~~~ 83 (135)
++ .+.+ +| .+.||..||.|.-|+...+
T Consensus 580 ~l-~~~p~~~~~L~Sgs~Dg~v~iWd~~~~ 608 (793)
T PLN00181 580 SI-DYSSADPTLLASGSDDGSVKLWSINQG 608 (793)
T ss_pred EE-EEcCCCCCEEEEEcCCCEEEEEECCCC
Confidence 55 4653 55 5889999999988876433
No 159
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.53 E-value=1.1e+02 Score=26.55 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=36.1
Q ss_pred EEEEecCcEEEEEEcCCCc-eeEEeeecC---------CCCCceeECCCCCEEEEeCCCceEEeCCC
Q 032726 66 LYTATNDGWVKYFILHNET-LVNWKHIDS---------QSLLGLTTTKEGDVVICDSKKVRQHTNSQ 122 (135)
Q Consensus 66 lYTg~~dG~I~ri~~~~~~-~~~~~~t~G---------RPpLGl~fd~~G~LiVaDa~~GLl~V~~~ 122 (135)
+.-+..+++++.++. .+. .+..-.+.| ++ =|++.|.+|+|||+----+..+-.++
T Consensus 248 LVLS~ESr~l~Evd~-~G~~~~~lsL~~g~~gL~~dipqa-EGiamDd~g~lYIvSEPnlfy~F~~~ 312 (316)
T COG3204 248 LVLSDESRRLLEVDL-SGEVIELLSLTKGNHGLSSDIPQA-EGIAMDDDGNLYIVSEPNLFYRFTPQ 312 (316)
T ss_pred EEEecCCceEEEEec-CCCeeeeEEeccCCCCCcccCCCc-ceeEECCCCCEEEEecCCcceecccC
Confidence 455666778888765 333 333333332 45 69999999999998776666665554
No 160
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=35.39 E-value=2.6e+02 Score=25.72 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=42.0
Q ss_pred eeeeeeCCC-cEEEEecCcEEEEEEcCCCce-eEEeeecCCCCCceeE--CCCCCEEEEeCCCceEEeC
Q 032726 56 DVSVVVRKG-ALYTATNDGWVKYFILHNETL-VNWKHIDSQSLLGLTT--TKEGDVVICDSKKVRQHTN 120 (135)
Q Consensus 56 di~avd~~G-~lYTg~~dG~I~ri~~~~~~~-~~~~~t~GRPpLGl~f--d~~G~LiVaDa~~GLl~V~ 120 (135)
++ .++.|| .||....+|.||-++...... -.|..-|| - -|..+ ..+|.++.+=+..|+..|=
T Consensus 349 ~~-~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~-v-~gts~~~S~ng~ylA~GS~~GiVNIY 414 (514)
T KOG2055|consen 349 DF-TFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGS-V-HGTSLCISLNGSYLATGSDSGIVNIY 414 (514)
T ss_pred eE-EEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCc-c-ceeeeeecCCCceEEeccCcceEEEe
Confidence 56 477777 699999999999997743333 23443332 2 34444 4788888888888887764
No 161
>COG4787 FlgF Flagellar basal body rod protein [Cell motility and secretion]
Probab=35.33 E-value=58 Score=27.16 Aligned_cols=35 Identities=9% Similarity=0.205 Sum_probs=21.9
Q ss_pred eecCCCCCceeECCCCCEEEEeCC-------CceEEeCCCCeE
Q 032726 90 HIDSQSLLGLTTTKEGDVVICDSK-------KVRQHTNSQALI 125 (135)
Q Consensus 90 ~t~GRPpLGl~fd~~G~LiVaDa~-------~GLl~V~~~G~v 125 (135)
.+-||| |-++.+.||-|-|-|+. -|=++|+++|..
T Consensus 72 ~~TgR~-LDvaiq~DGwlaVq~~dG~EaYTRnG~~qI~a~g~l 113 (251)
T COG4787 72 DYTGRP-LDVAIQGDGWLAVQDADGSEAYTRNGNIQIDATGQL 113 (251)
T ss_pred cccCCc-ceEEEccCceEEEEcCCCcchheecCceEECcccce
Confidence 345777 77777777776665543 355666666643
No 162
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=35.10 E-value=46 Score=29.64 Aligned_cols=69 Identities=17% Similarity=0.282 Sum_probs=47.4
Q ss_pred eccCCcCCCceeeeeeCCC-cEEEEecCcEEEEEEcCCCc---------eeEEeeecCCCCCceeECCCCCEEEEeCCCc
Q 032726 46 LGEGCVSHPEDVSVVVRKG-ALYTATNDGWVKYFILHNET---------LVNWKHIDSQSLLGLTTTKEGDVVICDSKKV 115 (135)
Q Consensus 46 l~~g~~~GPEdi~avd~~G-~lYTg~~dG~I~ri~~~~~~---------~~~~~~t~GRPpLGl~fd~~G~LiVaDa~~G 115 (135)
|--|+-.-||.- .|.+|| .+.+|+.||-|--|+-.+|. .++|....--- |-|.|.+|.+++.--+.-|
T Consensus 208 IKFg~KSh~EcA-~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aV-lci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 208 IKFGQKSHVECA-RFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAV-LCISFSRDSEMLASGSQDG 285 (508)
T ss_pred eecccccchhhe-eeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccce-EEEeecccHHHhhccCcCC
Confidence 334445789999 799999 58999999999777554442 23454444544 8889988888765544444
Q ss_pred e
Q 032726 116 R 116 (135)
Q Consensus 116 L 116 (135)
=
T Consensus 286 k 286 (508)
T KOG0275|consen 286 K 286 (508)
T ss_pred c
Confidence 3
No 163
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=35.06 E-value=1.3e+02 Score=25.98 Aligned_cols=67 Identities=10% Similarity=0.023 Sum_probs=39.5
Q ss_pred cceEeccCCcC-CC-ceeeeee-CCCcEEEEecCcEEEEEEcCCCceeEEeeecCCCCCceeECCCCCEEEE
Q 032726 42 DLIKLGEGCVS-HP-EDVSVVV-RKGALYTATNDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVVIC 110 (135)
Q Consensus 42 ~~e~l~~g~~~-GP-Edi~avd-~~G~lYTg~~dG~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~LiVa 110 (135)
+-|+|+.-+.+ |. =.+ .+| ..-.+.||.+|-.+.-|+.+.|..--...+ +-|-=++.|+.+||++.+
T Consensus 41 nGerlGty~GHtGavW~~-Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~ 110 (327)
T KOG0643|consen 41 NGERLGTYDGHTGAVWCC-DIDWDSKHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSFGGNLILA 110 (327)
T ss_pred CCceeeeecCCCceEEEE-EecCCcceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEE
Confidence 55777754332 21 133 244 234799999999888887755543221222 333357788889987543
No 164
>PRK12691 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=34.75 E-value=1.7e+02 Score=23.84 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=13.1
Q ss_pred CCCceeeeeeCCCcEEEEecCcEE
Q 032726 52 SHPEDVSVVVRKGALYTATNDGWV 75 (135)
Q Consensus 52 ~GPEdi~avd~~G~lYTg~~dG~I 75 (135)
-.|=|+ |++.+|.+-.-+.+|..
T Consensus 90 g~~lDl-AI~G~GfF~V~~~~G~~ 112 (262)
T PRK12691 90 GNDLDL-AIQGRGYFQIQLPDGET 112 (262)
T ss_pred CCceeE-EEcCCcEEEEEcCCCCE
Confidence 456677 57655554444456643
No 165
>PLN00181 protein SPA1-RELATED; Provisional
Probab=34.64 E-value=2.5e+02 Score=26.08 Aligned_cols=58 Identities=12% Similarity=0.075 Sum_probs=32.4
Q ss_pred eeCCCcEEEEecCcEEEEEEcCCCc-------eeEEeeecCCCCCceeECCCCCEEEEeCCCceEE
Q 032726 60 VVRKGALYTATNDGWVKYFILHNET-------LVNWKHIDSQSLLGLTTTKEGDVVICDSKKVRQH 118 (135)
Q Consensus 60 vd~~G~lYTg~~dG~I~ri~~~~~~-------~~~~~~t~GRPpLGl~fd~~G~LiVaDa~~GLl~ 118 (135)
+.....++|+..||.|.-|+...+. ...+..-.... --+.|+.+|+++++-+.-|-+.
T Consensus 669 f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i-~~v~~s~~~~~lasgs~D~~v~ 733 (793)
T PLN00181 669 FVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVK-NFVGLSVSDGYIATGSETNEVF 733 (793)
T ss_pred EeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCe-eEEEEcCCCCEEEEEeCCCEEE
Confidence 4445579999999998877653211 11111111222 3466777777766655555433
No 166
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=34.05 E-value=1.1e+02 Score=21.16 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=9.0
Q ss_pred CceeECCCCCEEEEeC
Q 032726 97 LGLTTTKEGDVVICDS 112 (135)
Q Consensus 97 LGl~fd~~G~LiVaDa 112 (135)
..+.+..+|||++-|+
T Consensus 88 ~~~~L~ddGnlvl~~~ 103 (114)
T smart00108 88 YVLVLLDDGNLVIYDS 103 (114)
T ss_pred eEEEEeCCCCEEEECC
Confidence 4455556666665554
No 167
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=33.77 E-value=1.4e+02 Score=29.25 Aligned_cols=53 Identities=25% Similarity=0.351 Sum_probs=39.2
Q ss_pred ceeeeeeCCCc-EEEEecCcEEEEEEcCCCceeEEeeecCCCCCceeECCCCCEEE
Q 032726 55 EDVSVVVRKGA-LYTATNDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVVI 109 (135)
Q Consensus 55 Edi~avd~~G~-lYTg~~dG~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~LiV 109 (135)
.|+ .|.+||+ +.++..|+.|.-|+.+.+..-.--.+.--+ .-+.|.++|+.+.
T Consensus 580 td~-~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~-~sls~SPngD~LA 633 (910)
T KOG1539|consen 580 TDM-TFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPC-TSLSFSPNGDFLA 633 (910)
T ss_pred eee-EeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcc-eeeEECCCCCEEE
Confidence 488 5888985 999999999998987766543333344433 8899999998764
No 168
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=33.43 E-value=61 Score=20.81 Aligned_cols=10 Identities=10% Similarity=0.132 Sum_probs=4.8
Q ss_pred eEEeCCCCeE
Q 032726 116 RQHTNSQALI 125 (135)
Q Consensus 116 Ll~V~~~G~v 125 (135)
|.|.++||.+
T Consensus 31 l~Rln~DGsL 40 (55)
T TIGR02608 31 LARLNADGSL 40 (55)
T ss_pred EEEECCCCCc
Confidence 4455555443
No 169
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=33.03 E-value=91 Score=27.02 Aligned_cols=72 Identities=22% Similarity=0.126 Sum_probs=40.4
Q ss_pred CCCceeeeee-CCCcEEEEecCcEEEEEEcCCC-c-e-eEEeeecCCCCCceeECCCC-CEEEEeCCCceEEeCCCCeEE
Q 032726 52 SHPEDVSVVV-RKGALYTATNDGWVKYFILHNE-T-L-VNWKHIDSQSLLGLTTTKEG-DVVICDSKKVRQHTNSQALII 126 (135)
Q Consensus 52 ~GPEdi~avd-~~G~lYTg~~dG~I~ri~~~~~-~-~-~~~~~t~GRPpLGl~fd~~G-~LiVaDa~~GLl~V~~~G~v~ 126 (135)
..-|.+ +.| ..|.+|-+-.|=-|||+..+-+ + . +.+..+.+-| -|.-|-+| .+|+.--.+|-|..+.+|+=+
T Consensus 205 tQTEG~-VaDdEtG~LYIaeEdvaiWK~~Aep~~G~~g~~idr~~d~~--~LtdDvEGltiYy~pnGkGYL~aSSQGnNt 281 (364)
T COG4247 205 TQTEGM-VADDETGFLYIAEEDVAIWKYEAEPNRGNTGRLIDRIKDLS--YLTDDVEGLTIYYGPNGKGYLLASSQGNNT 281 (364)
T ss_pred Ccccce-eeccccceEEEeeccceeeecccCCCCCCccchhhhhcCch--hhcccccccEEEEcCCCcEEEEEecCCCce
Confidence 356788 455 7799999999999999965221 1 1 1222222222 22223333 355555556666656555543
No 170
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=32.55 E-value=38 Score=30.52 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=18.2
Q ss_pred CCCcEEEEecCcEEEEEEcCCC
Q 032726 62 RKGALYTATNDGWVKYFILHNE 83 (135)
Q Consensus 62 ~~G~lYTg~~dG~I~ri~~~~~ 83 (135)
.+|-||+|++|++|.-|+..+|
T Consensus 257 G~gliySgS~DrtIkvw~a~dG 278 (480)
T KOG0271|consen 257 GEGLIYSGSQDRTIKVWRALDG 278 (480)
T ss_pred CCceEEecCCCceEEEEEccch
Confidence 4778999999999988876554
No 171
>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=32.51 E-value=1.9e+02 Score=23.50 Aligned_cols=44 Identities=14% Similarity=0.187 Sum_probs=24.3
Q ss_pred CCCceeeeeeCCCcEEEEecCcEEEEEEcCCCcee-----EEeeecCCCCCc
Q 032726 52 SHPEDVSVVVRKGALYTATNDGWVKYFILHNETLV-----NWKHIDSQSLLG 98 (135)
Q Consensus 52 ~GPEdi~avd~~G~lYTg~~dG~I~ri~~~~~~~~-----~~~~t~GRPpLG 98 (135)
..|=|+ |++.+|.+-.-+.+|... ++- +|... .+....|+|.||
T Consensus 90 g~~lD~-AI~G~GfF~V~~~~G~~~-yTR-~G~F~~d~~G~Lvt~~G~~Vl~ 138 (260)
T PRK12694 90 GNSKDV-AINGQGFFQVLMPDGTTA-YTR-DGSFQTNAQGQLVTSSGYPLQP 138 (260)
T ss_pred CCcceE-EEcCCcEEEEEcCCCCeE-Eee-CCCceECCCCCEECCCCCEecc
Confidence 467788 687777665556677542 322 33211 134456777665
No 172
>PF03039 IL12: Interleukin-12 alpha subunit; InterPro: IPR004281 Interleukin 12 (IL-12) is a disulphide-bonded heterodimer consisting of a 35kDa alpha subunit and a 40kDa beta subunit. It is involved in the stimulation and maintenance of Th1 cellular immune responses, including the normal host defence against various intracellular pathogens, such as Leishmania, Toxoplasma, Measles virus and Human immunodeficiency virus 1 (HIV). IL-12 also has an important role in pathological Th1 responses, such as in inflammatory bowel disease and multiple sclerosis. Suppression of IL-12 activity in such diseases may have therapeutic benefit. On the other hand, administration of recombinant IL-12 may have therapeutic benefit in conditions associated with pathological Th2 responses [, ].; GO: 0005143 interleukin-12 receptor binding, 0008083 growth factor activity, 0006955 immune response, 0005576 extracellular region; PDB: 3HMX_B 1F45_B.
Probab=31.81 E-value=5.3 Score=32.73 Aligned_cols=50 Identities=24% Similarity=0.258 Sum_probs=12.4
Q ss_pred Cchh-HHHHHHHHHHHHHhhhCCCCcccCCCCCCC------C------------CCcccccceEeccCCcCCCcee
Q 032726 1 MAPK-SFLLACLLAFTLQFFFSPPVSSSASLLSTS------K------------ESSSMKDLIKLGEGCVSHPEDV 57 (135)
Q Consensus 1 ~~~~-~~~~~~~la~~~~l~~~~pi~P~~~~~p~~------~------------~N~~L~~~e~l~~g~~~GPEdi 57 (135)
|-++ +++++|+|.+.-++-| +|..|+. + .|+.|++|+...+.---.+|+|
T Consensus 1 m~~~r~l~l~a~lvll~~l~~-------ar~lp~~~~~p~~~~cl~~s~~ll~a~~~~l~karq~l~~y~ct~eei 69 (219)
T PF03039_consen 1 MCPSRSLLLLATLVLLNHLSL-------ARNLPVSTPGPGMAQCLNHSQNLLRAVSNTLQKARQTLEFYSCTSEEI 69 (219)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHGGCS-------
T ss_pred CCchHhHHHHHHHHHHhhhhH-------hhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhc
Confidence 4444 6777888877766655 3444422 1 5888999988888755688887
No 173
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=31.46 E-value=2.3e+02 Score=24.19 Aligned_cols=52 Identities=12% Similarity=0.107 Sum_probs=31.4
Q ss_pred ecCcEEEEEEcCCCceeEEeeecCCCCCceeECCCCC-EEEEeCCCceEEeCC
Q 032726 70 TNDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGD-VVICDSKKVRQHTNS 121 (135)
Q Consensus 70 ~~dG~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~-LiVaDa~~GLl~V~~ 121 (135)
..+|.|.=|+....+...--.++|.++.++.|.++|+ +||+...-.+-.+|.
T Consensus 13 ~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~ 65 (369)
T PF02239_consen 13 RGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDL 65 (369)
T ss_dssp GGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEET
T ss_pred cCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEEC
Confidence 3478888887643333333355676546788999886 899986655666664
No 174
>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=30.99 E-value=2.3e+02 Score=23.29 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=26.0
Q ss_pred CCCceeeeeeCCCcEEEEecCcEEEEEEcCCCcee-----EEeeecCCCCCc-eeE
Q 032726 52 SHPEDVSVVVRKGALYTATNDGWVKYFILHNETLV-----NWKHIDSQSLLG-LTT 101 (135)
Q Consensus 52 ~GPEdi~avd~~G~lYTg~~dG~I~ri~~~~~~~~-----~~~~t~GRPpLG-l~f 101 (135)
..|=|+ |++.+|.+-.-..+|... ++- +|... .+....|.|.|+ |.+
T Consensus 90 g~~lDl-AI~G~GFF~V~~~~G~~~-YTR-~G~F~~d~~G~Lvt~~G~~vl~~I~l 142 (264)
T PRK12816 90 GNKLDV-AIEGEGFFKILMPDGTYA-YTR-DGSFKIDANGQLVTSNGYRLLPEIIF 142 (264)
T ss_pred CCcceE-EECCCcEEEEEcCCCCeE-Eee-CCCeeECCCCCEECCCCCEecceeec
Confidence 467788 687777666666677542 322 33211 234456777666 444
No 175
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=30.89 E-value=1.6e+02 Score=26.71 Aligned_cols=62 Identities=18% Similarity=0.146 Sum_probs=39.6
Q ss_pred cCCcCCCceeeeeeCCCcE-EEEecC--cEEEEEEcCCCceeEEeeecCCCCCceeECCCCCEEEEeC
Q 032726 48 EGCVSHPEDVSVVVRKGAL-YTATND--GWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVVICDS 112 (135)
Q Consensus 48 ~g~~~GPEdi~avd~~G~l-YTg~~d--G~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~LiVaDa 112 (135)
+|--.|=-++ ++-.||.+ -||..| ||||-+. .++..-+-.---++.+++.|+++|..+.-=+
T Consensus 300 EGHs~~v~~i-af~~DGSL~~tGGlD~~~RvWDlR--tgr~im~L~gH~k~I~~V~fsPNGy~lATgs 364 (459)
T KOG0272|consen 300 EGHSKGVFSI-AFQPDGSLAATGGLDSLGRVWDLR--TGRCIMFLAGHIKEILSVAFSPNGYHLATGS 364 (459)
T ss_pred ccccccccee-EecCCCceeeccCccchhheeecc--cCcEEEEecccccceeeEeECCCceEEeecC
Confidence 5555677789 69899964 566554 8888774 4443332111223459999999998765433
No 176
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=30.87 E-value=1.2e+02 Score=21.09 Aligned_cols=17 Identities=35% Similarity=0.552 Sum_probs=13.8
Q ss_pred CceeECCCCCEEEEeCC
Q 032726 97 LGLTTTKEGDVVICDSK 113 (135)
Q Consensus 97 LGl~fd~~G~LiVaDa~ 113 (135)
.-+.|+.+|+|++.|..
T Consensus 57 ~~l~l~~dGnLvl~~~~ 73 (116)
T cd00028 57 CTLTLQSDGNLVIYDGS 73 (116)
T ss_pred EEEEEecCCCeEEEcCC
Confidence 66888889999988864
No 177
>PF04879 Molybdop_Fe4S4: Molybdopterin oxidoreductase Fe4S4 domain; InterPro: IPR006963 The molybdopterin oxidoreductase Fe4S4 domain is found in a number of reductase/dehydrogenase families, which include the periplasmic nitrate reductase precursor and the formate dehydrogenase alpha chain [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2VPZ_A 2VPY_A 2VPW_A 2VPX_A 2NYA_A 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 ....
Probab=30.85 E-value=17 Score=22.39 Aligned_cols=18 Identities=11% Similarity=-0.021 Sum_probs=14.3
Q ss_pred cEEEEecCcEEEEEEcCC
Q 032726 65 ALYTATNDGWVKYFILHN 82 (135)
Q Consensus 65 ~lYTg~~dG~I~ri~~~~ 82 (135)
.+...+.||+|+|++.+.
T Consensus 16 ~i~~~v~~g~i~~v~g~~ 33 (55)
T PF04879_consen 16 GIDVYVKDGKIVKVEGDP 33 (55)
T ss_dssp EEEEEEETTEEEEEEE-T
T ss_pred cEEEEEecCceEEEECCC
Confidence 577788999999997743
No 178
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=30.79 E-value=2.2e+02 Score=24.66 Aligned_cols=70 Identities=16% Similarity=0.234 Sum_probs=44.3
Q ss_pred CcccccceEeccCCcCCCceeeeeeCCCc-EEEEecCcEEEEEEcCCCce-eEE-eeecCCCCCceeECCCCCEEE
Q 032726 37 SSSMKDLIKLGEGCVSHPEDVSVVVRKGA-LYTATNDGWVKYFILHNETL-VNW-KHIDSQSLLGLTTTKEGDVVI 109 (135)
Q Consensus 37 N~~L~~~e~l~~g~~~GPEdi~avd~~G~-lYTg~~dG~I~ri~~~~~~~-~~~-~~t~GRPpLGl~fd~~G~LiV 109 (135)
|..--.+.+.+.|--+-=+|+ ++.+||+ ..++..||.+.-++...+.. ..| .|+-. -|+++|+++.+-+|
T Consensus 49 d~~~G~~~r~~~GHsH~v~dv-~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~d--Vlsva~s~dn~qiv 121 (315)
T KOG0279|consen 49 DIKYGVPVRRLTGHSHFVSDV-VLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKD--VLSVAFSTDNRQIV 121 (315)
T ss_pred ccccCceeeeeeccceEecce-EEccCCceEEeccccceEEEEEecCCcEEEEEEecCCc--eEEEEecCCCceee
Confidence 333444555666644445677 5778884 77889999998887755432 222 23323 38999998766554
No 179
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=30.75 E-value=1.3e+02 Score=27.51 Aligned_cols=62 Identities=8% Similarity=0.012 Sum_probs=42.4
Q ss_pred eeeeeeC-CCcEEEEecCcEEEEEEcCCCc-eeEEe--eecCCCCCceeECCCCCEEEEeCCCceEEe
Q 032726 56 DVSVVVR-KGALYTATNDGWVKYFILHNET-LVNWK--HIDSQSLLGLTTTKEGDVVICDSKKVRQHT 119 (135)
Q Consensus 56 di~avd~-~G~lYTg~~dG~I~ri~~~~~~-~~~~~--~t~GRPpLGl~fd~~G~LiVaDa~~GLl~V 119 (135)
++ +||. +-.+|.|-.+|.|++-+..... ...++ +--|-- .||..++..|.++.-..-|+..+
T Consensus 110 ~L-~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~V-Y~m~~~P~DN~~~~~t~~~~V~~ 175 (609)
T KOG4227|consen 110 SL-EFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDV-YHMDQHPTDNTLIVVTRAKLVSF 175 (609)
T ss_pred EE-EEccCCeeEecCCCcceeEeeecccceeeeeecccCcccce-eecccCCCCceEEEEecCceEEE
Confidence 56 5774 4579999999999987553222 22332 344677 89999988888776666666554
No 180
>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG, Gram-negative bacteria. This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes.
Probab=30.46 E-value=2.9e+02 Score=22.42 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=26.3
Q ss_pred CCCceeeeeeCCCcEEEEecCcEEEEEEcCCCcee-----EEeeecCCCCCc-eeEC
Q 032726 52 SHPEDVSVVVRKGALYTATNDGWVKYFILHNETLV-----NWKHIDSQSLLG-LTTT 102 (135)
Q Consensus 52 ~GPEdi~avd~~G~lYTg~~dG~I~ri~~~~~~~~-----~~~~t~GRPpLG-l~fd 102 (135)
-.|=|+ +++.+|.+-.-+.+|... ++- +|... .+....|+|.|+ |.+.
T Consensus 88 g~~lD~-AI~G~GfF~V~~~~g~~~-yTR-~G~F~~d~~G~Lvt~~G~~Vl~~I~lp 141 (259)
T TIGR02488 88 GNDLDL-AIEGEGFFQVLMPDGTTA-YTR-DGAFKINAEGQLVTSNGYPLQPEITIP 141 (259)
T ss_pred CCcceE-EEcCCcEEEEEcCCCCeE-Eee-CCceEECCCCCEECCCCCEecCceecC
Confidence 467788 677677655555677542 322 33211 134456777666 4443
No 181
>PRK12636 flgG flagellar basal body rod protein FlgG; Provisional
Probab=30.39 E-value=3e+02 Score=22.46 Aligned_cols=67 Identities=15% Similarity=0.251 Sum_probs=32.2
Q ss_pred CCCceeeeeeCCCcEEEEecCcEEEEEEcCCCcee-----EEeeecCCCCCceeECCCCCEEEEeCCCceEEeCCCCeEE
Q 032726 52 SHPEDVSVVVRKGALYTATNDGWVKYFILHNETLV-----NWKHIDSQSLLGLTTTKEGDVVICDSKKVRQHTNSQALII 126 (135)
Q Consensus 52 ~GPEdi~avd~~G~lYTg~~dG~I~ri~~~~~~~~-----~~~~t~GRPpLGl~fd~~G~LiVaDa~~GLl~V~~~G~v~ 126 (135)
-.|=|+ |++.+|.+-.-..+| + +++- +|... .+....|+|.||- ..|.+. .....+=++|++||.|.
T Consensus 89 g~~lDl-AI~G~GfF~V~~~~g-~-~YTR-~G~F~~d~~G~Lvt~~G~~vlg~---~g~pI~-~p~~~~~~~i~~dG~I~ 160 (263)
T PRK12636 89 GRPLDL-AISGDGFFRVGDGDN-T-AYTR-AGNFYLDNEGNIVNADGLYLLGM---NGGRIQ-IPTDAQSFSIGADGTVS 160 (263)
T ss_pred CCceeE-EEcCCcEEEEEeCCC-C-EEEe-CCCeEECCCCCEEcCCCCEeecC---CCCceE-eCCCCceEEECCCCeEE
Confidence 467788 577666555555566 2 2432 33211 1334456665551 112332 22222346666777663
No 182
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=29.93 E-value=2.6e+02 Score=24.52 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=39.0
Q ss_pred eeCCC-cEEEEecCcEEEEEEcC-CCc-eeEEee-ecCCCCCceeECCCCCEEEEeCCCceEEe
Q 032726 60 VVRKG-ALYTATNDGWVKYFILH-NET-LVNWKH-IDSQSLLGLTTTKEGDVVICDSKKVRQHT 119 (135)
Q Consensus 60 vd~~G-~lYTg~~dG~I~ri~~~-~~~-~~~~~~-t~GRPpLGl~fd~~G~LiVaDa~~GLl~V 119 (135)
...+| .+-|++..|.++||... +++ .+.+.. +.---..-|+|.+++.++.|-+.||=+.|
T Consensus 189 Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHi 252 (346)
T KOG2111|consen 189 LNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHI 252 (346)
T ss_pred EcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEE
Confidence 44677 57889999999998542 222 122210 00000256899999999999999997655
No 183
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=29.14 E-value=2.2e+02 Score=25.87 Aligned_cols=71 Identities=18% Similarity=0.276 Sum_probs=46.9
Q ss_pred eeCCC-cEEEEecCcEEEEEEcCCCce---------e-----EEe----eecCCCCCceeECCCCCEEEEeCCCceEEeC
Q 032726 60 VVRKG-ALYTATNDGWVKYFILHNETL---------V-----NWK----HIDSQSLLGLTTTKEGDVVICDSKKVRQHTN 120 (135)
Q Consensus 60 vd~~G-~lYTg~~dG~I~ri~~~~~~~---------~-----~~~----~t~GRPpLGl~fd~~G~LiVaDa~~GLl~V~ 120 (135)
..+|| .|-+|..||.|.-|++..++. + .|+ ....|- | -.-.+||+..|=|-..|-....
T Consensus 165 wsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~-l-as~skDg~vrIWd~~~~~~~~~ 242 (480)
T KOG0271|consen 165 WSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRR-L-ASSSKDGSVRIWDTKLGTCVRT 242 (480)
T ss_pred ECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccc-e-ecccCCCCEEEEEccCceEEEE
Confidence 55788 689999999999998744420 0 121 122332 1 1223789999999999888888
Q ss_pred CCCeEEEEEEEe
Q 032726 121 SQALIIVCVCVY 132 (135)
Q Consensus 121 ~~G~v~vl~~~~ 132 (135)
-.|.--...||.
T Consensus 243 lsgHT~~VTCvr 254 (480)
T KOG0271|consen 243 LSGHTASVTCVR 254 (480)
T ss_pred eccCccceEEEE
Confidence 777666666654
No 184
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=28.51 E-value=87 Score=26.74 Aligned_cols=24 Identities=4% Similarity=0.059 Sum_probs=20.6
Q ss_pred eECCCCCEEEEeCCCceEEeCCCC
Q 032726 100 TTTKEGDVVICDSKKVRQHTNSQA 123 (135)
Q Consensus 100 ~fd~~G~LiVaDa~~GLl~V~~~G 123 (135)
=|+.+|+|+..-+..|++++-+++
T Consensus 265 lf~r~G~LiA~~~QEG~~r~~~~~ 288 (289)
T COG1946 265 LFDRDGQLIASVVQEGLIRYHRAK 288 (289)
T ss_pred EEcCCCCEEEEEeeeEEEeccCCC
Confidence 389999999999999999987653
No 185
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=27.97 E-value=2.2e+02 Score=20.08 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=15.4
Q ss_pred CceeECCCCCEEEEeCCCc
Q 032726 97 LGLTTTKEGDVVICDSKKV 115 (135)
Q Consensus 97 LGl~fd~~G~LiVaDa~~G 115 (135)
.-+.+..+|||++-|....
T Consensus 55 ~~~~L~~~GNlvl~d~~~~ 73 (114)
T PF01453_consen 55 CYLVLQDDGNLVLYDSSGN 73 (114)
T ss_dssp EEEEEETTSEEEEEETTSE
T ss_pred eEEEEeCCCCEEEEeecce
Confidence 7788889999999996433
No 186
>PRK02888 nitrous-oxide reductase; Validated
Probab=27.92 E-value=2.2e+02 Score=26.92 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=27.7
Q ss_pred ecCcEEEEEEcCC-----CceeEEeeecCCCCCceeECCCCCEEEE
Q 032726 70 TNDGWVKYFILHN-----ETLVNWKHIDSQSLLGLTTTKEGDVVIC 110 (135)
Q Consensus 70 ~~dG~I~ri~~~~-----~~~~~~~~t~GRPpLGl~fd~~G~LiVa 110 (135)
..+++|.-++... ........++=|| -|+++++||+-+++
T Consensus 293 V~gn~V~VID~~t~~~~~~~v~~yIPVGKsP-HGV~vSPDGkylyV 337 (635)
T PRK02888 293 IGGSKVPVVDGRKAANAGSALTRYVPVPKNP-HGVNTSPDGKYFIA 337 (635)
T ss_pred ECCCEEEEEECCccccCCcceEEEEECCCCc-cceEECCCCCEEEE
Confidence 3566787776643 1234456788888 99999999975444
No 187
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.80 E-value=34 Score=31.24 Aligned_cols=72 Identities=15% Similarity=0.153 Sum_probs=41.0
Q ss_pred CcccccceEeccCCc-CCCceee----eeeCCCcEEEEecCcEEEEEEcCCCceeEEeeecCCCCCceeECCCCCEEEEe
Q 032726 37 SSSMKDLIKLGEGCV-SHPEDVS----VVVRKGALYTATNDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVVICD 111 (135)
Q Consensus 37 N~~L~~~e~l~~g~~-~GPEdi~----avd~~G~lYTg~~dG~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~LiVaD 111 (135)
+..|.+.+.+-.|.- ..|+.-. +++-.=.-..|++.|-|-.... +...|.+.+|.||| +.++.++.|+|
T Consensus 301 ~~~LsSLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAEGLvnyTRL-DDp~E~i~~TQGrP-----lsP~DEvrvvD 374 (542)
T COG1021 301 RADLSSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLVNYTRL-DDPPEIIIHTQGRP-----LSPDDEVRVVD 374 (542)
T ss_pred cCCchheeEEeecCcccCHHHHhhchhhhCchHHHHhhhhhhhhccccc-CCchHheeecCCCc-----CCCcceeEEec
Confidence 445666666666532 2333220 0111112344666666644333 34567788999999 26788999999
Q ss_pred CCC
Q 032726 112 SKK 114 (135)
Q Consensus 112 a~~ 114 (135)
+.-
T Consensus 375 ~dg 377 (542)
T COG1021 375 ADG 377 (542)
T ss_pred CCC
Confidence 875
No 188
>PRK04043 tolB translocation protein TolB; Provisional
Probab=27.67 E-value=4.1e+02 Score=23.07 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=23.7
Q ss_pred eeCCCc--EE-EEec--CcEEEEEEcCCCceeEEeeecCCCCCceeECCCCC
Q 032726 60 VVRKGA--LY-TATN--DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGD 106 (135)
Q Consensus 60 vd~~G~--lY-Tg~~--dG~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~ 106 (135)
..+||+ +| +... +..|+.++..++..+.+....|.. ..-+|.+||+
T Consensus 195 wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~-~~~~~SPDG~ 245 (419)
T PRK04043 195 WANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGML-VVSDVSKDGS 245 (419)
T ss_pred ECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcE-EeeEECCCCC
Confidence 446663 44 3333 245777766555445444434433 3345666664
No 189
>PRK06132 hypothetical protein; Provisional
Probab=26.60 E-value=4.1e+02 Score=23.21 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=18.9
Q ss_pred cCCCceeeeeeCCCcEEEEecCcEEEEE
Q 032726 51 VSHPEDVSVVVRKGALYTATNDGWVKYF 78 (135)
Q Consensus 51 ~~GPEdi~avd~~G~lYTg~~dG~I~ri 78 (135)
-.||-.| .+|....-.+-..||++++.
T Consensus 57 ~~~p~~I-vVsl~~qrL~Vy~nG~lV~~ 83 (359)
T PRK06132 57 PQGPLVI-VVSLDEQRLYVYDNGILIAV 83 (359)
T ss_pred CCCCeEE-EEECCCCEEEEEECCEEEEE
Confidence 3567788 79966666667778887764
No 190
>PF03989 DNA_gyraseA_C: DNA gyrase C-terminal domain, beta-propeller; InterPro: IPR006691 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. This entry represents the beta-pinwheel repeat found at the C-terminal end of subunit A of topoisomerase IV (ParC) and subunit A of DNA gyrase (GyrA). DNA gyrase is the topoisomerase II found primarily in bacteria and archaea that consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. This is distinct from the topoisomerase II found in most eukaryotes, which consists of a single polypeptide, with the N- and C-terminal regions corresponding to gyrB and gyrA, respectively, and which is not represented in this entry. The ability of DNA gyrase to introduce negative supercoils into DNA is mediated in part by the C-terminal domain of subunit A, which forms a beta-pinwheel fold that is similar to a beta-propeller but with a different blade topology, and which forms a superhelical spiral domain [, ]. This beta-pinwheel is capable of bending DNA by over 180 degrees over a 40 bp region, possibly by wrapping the DNA around the GyrA C-terminal beta-pinwheel domain. In topoisomerase IV, although the C-terminal domain forms a similar superhelical spiral to that of DNA gyrase A, it assembles as a broken form of a beta-pinwheel as distinct from that of gyrA, due to the absence of a DNA gyrase-specific GyrA box motif []. This difference may account for parC being less efficient than gyrA in mediating DNA-bending, leading to their divergence in terms of activity, where topoisomerase IV acts to relax positive supercoils, and DNA gyrase acts to introduce negative supercoils []. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 3L6V_A 3UC1_A 1ZI0_B 1SUU_A 1ZVU_A 1ZVT_B 3NO0_B.
Probab=26.46 E-value=86 Score=18.37 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=23.4
Q ss_pred cEEEEecCcEEEEEEcCCCceeEEeeecCCCCCceeECCCCCEE
Q 032726 65 ALYTATNDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVV 108 (135)
Q Consensus 65 ~lYTg~~dG~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~Li 108 (135)
.+...++.|+++|+... .-...-....|.+ ++.+.++++++
T Consensus 2 ~il~~T~~G~~~r~~~~-~i~~~~r~~~G~~--~~~l~~~d~iv 42 (48)
T PF03989_consen 2 EILLITSNGYVKRIPLS-EIPEQGRGSKGVK--IMKLKKGDEIV 42 (48)
T ss_dssp EEEEEETTSEEEEEEGG-GSHBCSTTSTTEE--SSECTTTCSEE
T ss_pred EEEEEeCCCeEEEeeec-cccccccCcceeE--EEecCCCCEEE
Confidence 46788999999999652 1111111233543 55666665554
No 191
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=26.40 E-value=1.4e+02 Score=26.80 Aligned_cols=38 Identities=32% Similarity=0.208 Sum_probs=23.1
Q ss_pred CCCcEEEEecCcEEEEEEcCCCceeEEeeecCCCCCceeECCCCCEEEEeCCCceEEe
Q 032726 62 RKGALYTATNDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVVICDSKKVRQHT 119 (135)
Q Consensus 62 ~~G~lYTg~~dG~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~LiVaDa~~GLl~V 119 (135)
.-|...++.+||+|+.-+. |..-|-++|.|+..|-+.|
T Consensus 329 ~~Ga~V~A~AdG~VvyA~~--------------------l~GYG~vvIldhG~gy~sl 366 (420)
T COG4942 329 SAGATVKAIADGRVVYADW--------------------LRGYGLVVILDHGGGYHSL 366 (420)
T ss_pred CCCCeeeeecCceEEechh--------------------hccCceEEEEEcCCccEEE
Confidence 5577777777777765421 2234556666666666554
No 192
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=26.18 E-value=4.1e+02 Score=23.05 Aligned_cols=61 Identities=16% Similarity=0.188 Sum_probs=40.9
Q ss_pred eeeeeeCCC-cEEEEecCcEEEEEEcCCCce-eEE--eeecCCCCCceeECCCCCEEEEeCCCceE
Q 032726 56 DVSVVVRKG-ALYTATNDGWVKYFILHNETL-VNW--KHIDSQSLLGLTTTKEGDVVICDSKKVRQ 117 (135)
Q Consensus 56 di~avd~~G-~lYTg~~dG~I~ri~~~~~~~-~~~--~~t~GRPpLGl~fd~~G~LiVaDa~~GLl 117 (135)
++ -|..|| .+--++..++|.-++.-+|.. ..+ ..-.|+-|+.-.|.++|+.+++-++.|-+
T Consensus 192 ~l-~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i 256 (311)
T KOG1446|consen 192 DL-EFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTI 256 (311)
T ss_pred ee-EEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcE
Confidence 45 366788 477888888888887655542 222 22334333888899999988887776644
No 193
>PRK12643 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=25.67 E-value=3.4e+02 Score=21.79 Aligned_cols=65 Identities=18% Similarity=0.313 Sum_probs=33.9
Q ss_pred CCCceeeeeeCCCcEEEEecCcEEEEEEcCCCcee-----EEeeecCCCCCceeECCCCCEEEEeCCCceEEeCCCCeEE
Q 032726 52 SHPEDVSVVVRKGALYTATNDGWVKYFILHNETLV-----NWKHIDSQSLLGLTTTKEGDVVICDSKKVRQHTNSQALII 126 (135)
Q Consensus 52 ~GPEdi~avd~~G~lYTg~~dG~I~ri~~~~~~~~-----~~~~t~GRPpLGl~fd~~G~LiVaDa~~GLl~V~~~G~v~ 126 (135)
-.|=|+ ++..+|.+-.-+.+|.+. ++- +|... .+ ...|.|.|| ..|.+.| ... +=++|++||+|.
T Consensus 75 g~~lDl-AI~G~GFF~V~~~~G~~~-YTR-~G~F~~d~~G~L-t~~G~~Vlg----~~gpI~i-p~~-~~i~I~~dG~I~ 144 (209)
T PRK12643 75 GRPLDV-ALQQDGYLAVQLPDGSEA-YTR-NGNIQISANGQM-TVQGYPLMG----DNGPIDV-PPQ-AAVTIAADGTIS 144 (209)
T ss_pred CCceeE-EECCCcEEEEEcCCCCeE-Eee-CCCceECCCCCC-cCCCcCccc----CCCceEc-CCC-CcEEECCCCeEE
Confidence 467788 677666666656677432 432 33211 13 455777564 2233332 221 346667777663
No 194
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=25.45 E-value=1.5e+02 Score=27.15 Aligned_cols=64 Identities=8% Similarity=0.144 Sum_probs=40.0
Q ss_pred ceeeeeeCCC-cEEEEecCcEEEEEEcCCCceeEEeeecCCCCCceeECCCC-CEEEEeCCC-ceEEeC
Q 032726 55 EDVSVVVRKG-ALYTATNDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKEG-DVVICDSKK-VRQHTN 120 (135)
Q Consensus 55 Edi~avd~~G-~lYTg~~dG~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G-~LiVaDa~~-GLl~V~ 120 (135)
-|+ .+..+| ++.++.-|+.|.-|+.+.|.... ...-|++|--+.|++++ |+++|=... =+..+|
T Consensus 262 rd~-~~s~~g~~fLS~sfD~~lKlwDtETG~~~~-~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wD 328 (503)
T KOG0282|consen 262 RDA-SFNNCGTSFLSASFDRFLKLWDTETGQVLS-RFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWD 328 (503)
T ss_pred hhh-hccccCCeeeeeecceeeeeeccccceEEE-EEecCCCceeeecCCCCCcEEEEecCCCcEEEEe
Confidence 355 466666 57777778888777665454433 33445555888899888 777664433 344555
No 195
>PF10055 DUF2292: Uncharacterized small protein (DUF2292); InterPro: IPR018743 Members of this family of hypothetical bacterial proteins have no known function.
Probab=25.15 E-value=98 Score=18.65 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=14.9
Q ss_pred CCcEEEEecCcEEEEEEc
Q 032726 63 KGALYTATNDGWVKYFIL 80 (135)
Q Consensus 63 ~G~lYTg~~dG~I~ri~~ 80 (135)
=|.+---.+||+|++++.
T Consensus 15 yGsV~iiiqdG~vvQIe~ 32 (38)
T PF10055_consen 15 YGSVTIIIQDGRVVQIEK 32 (38)
T ss_pred cceEEEEEECCEEEEEEh
Confidence 367778889999999965
No 196
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=24.91 E-value=85 Score=32.09 Aligned_cols=25 Identities=20% Similarity=0.112 Sum_probs=20.8
Q ss_pred eeeeeeCCCcEEEEecCcEEEEEEcC
Q 032726 56 DVSVVVRKGALYTATNDGWVKYFILH 81 (135)
Q Consensus 56 di~avd~~G~lYTg~~dG~I~ri~~~ 81 (135)
+- +.+.+|.+|||..|++|.+|+..
T Consensus 1310 ~~-~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1310 CG-VCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred ee-cccCCceeeecCCccceeeccCC
Confidence 44 46788999999999999999763
No 197
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=24.55 E-value=2.9e+02 Score=27.26 Aligned_cols=63 Identities=10% Similarity=0.138 Sum_probs=45.9
Q ss_pred eeeCCCc-EEEEecCcEEEEEEcCCCc-eeEE--eeecCCCCCceeECCCCCEEEEeCCCceEEeCC
Q 032726 59 VVVRKGA-LYTATNDGWVKYFILHNET-LVNW--KHIDSQSLLGLTTTKEGDVVICDSKKVRQHTNS 121 (135)
Q Consensus 59 avd~~G~-lYTg~~dG~I~ri~~~~~~-~~~~--~~t~GRPpLGl~fd~~G~LiVaDa~~GLl~V~~ 121 (135)
+++.=|+ .+-|.+.|+|=+++...|- ...| ..--++|.-|++.|..++++|.-.+.|+++.-.
T Consensus 455 ~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~ 521 (910)
T KOG1539|consen 455 CVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWD 521 (910)
T ss_pred EEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEe
Confidence 3555564 7889999999999774442 2333 123345568999999999999999999998763
No 198
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=24.54 E-value=1.4e+02 Score=26.10 Aligned_cols=81 Identities=19% Similarity=0.140 Sum_probs=52.9
Q ss_pred CcCCCceeeeee-CCCcEEEEecCcEEEEEEcCCCceeEEe-eecCCCCCceeECCCCCEEEE----eCCCceEEeCCC-
Q 032726 50 CVSHPEDVSVVV-RKGALYTATNDGWVKYFILHNETLVNWK-HIDSQSLLGLTTTKEGDVVIC----DSKKVRQHTNSQ- 122 (135)
Q Consensus 50 ~~~GPEdi~avd-~~G~lYTg~~dG~I~ri~~~~~~~~~~~-~t~GRPpLGl~fd~~G~LiVa----Da~~GLl~V~~~- 122 (135)
+++.=.|| +|- ..|.+-|...||++--|+. +.+..... .++..|.=-=+|+.+|++|+- |=.+|-.--+++
T Consensus 250 ~VYaVNsi-~FhP~hgtlvTaGsDGtf~FWDk-dar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYDWSkGhe~~n~~~ 327 (347)
T KOG0647|consen 250 DVYAVNSI-AFHPVHGTLVTAGSDGTFSFWDK-DARTKLKTSETHPQPITCCSFNRNGSIFAYALGYDWSKGHEGNNPQY 327 (347)
T ss_pred ceEEecce-EeecccceEEEecCCceEEEecc-hhhhhhhccCcCCCccceeEecCCCCEEEEEeecccccccccCCCCC
Confidence 46666788 465 5689999999999999965 44332222 566667334568999999873 334666665554
Q ss_pred CeEEEEEEEe
Q 032726 123 ALIIVCVCVY 132 (135)
Q Consensus 123 G~v~vl~~~~ 132 (135)
+..+.|--++
T Consensus 328 ~~~I~l~~~~ 337 (347)
T KOG0647|consen 328 KPQIFLHPVS 337 (347)
T ss_pred CCeEEEeecc
Confidence 4555554443
No 199
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=24.51 E-value=1.4e+02 Score=23.07 Aligned_cols=28 Identities=7% Similarity=0.082 Sum_probs=17.2
Q ss_pred CCCCCceeECCCCCEEEE--eCCCc--eEEeCCCCeEEE
Q 032726 93 SQSLLGLTTTKEGDVVIC--DSKKV--RQHTNSQALIIV 127 (135)
Q Consensus 93 GRPpLGl~fd~~G~LiVa--Da~~G--Ll~V~~~G~v~v 127 (135)
=|| +|.. ++|+ |...| |+.+|+.|...-
T Consensus 125 ~RP-~~v~------~li~G~D~~~g~~ly~~d~~G~~~~ 156 (213)
T cd03752 125 LRP-FGVS------FLYAGWDKHYGFQLYQSDPSGNYSG 156 (213)
T ss_pred ccc-ceeE------EEEEEEeCCCCCEEEEECCCCCeee
Confidence 366 8874 4443 54333 888888886554
No 200
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=24.41 E-value=33 Score=30.95 Aligned_cols=72 Identities=21% Similarity=0.195 Sum_probs=50.3
Q ss_pred eccCCcCCCceeeeeeCC-CcEEEEecCcEEEEEEcCCCcee---EEeeecCCCCCceeECCCCCEEEEeCCCc---eEE
Q 032726 46 LGEGCVSHPEDVSVVVRK-GALYTATNDGWVKYFILHNETLV---NWKHIDSQSLLGLTTTKEGDVVICDSKKV---RQH 118 (135)
Q Consensus 46 l~~g~~~GPEdi~avd~~-G~lYTg~~dG~I~ri~~~~~~~~---~~~~t~GRPpLGl~fd~~G~LiVaDa~~G---Ll~ 118 (135)
.++|+.+ ++ .+-++ +.+.||..|-.|.-|+...++.+ .++...|- ..-+.||.++.-.|+-.+-+ ++.
T Consensus 173 ~h~gev~---~v-~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~-it~~d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 173 AHEGEVH---DV-EFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGN-ITSIDFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred ccccccc---ee-EEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCC-cceeeecCCCceEEeecCCCceeeee
Confidence 4556554 66 35555 89999999998887765333322 23444443 48899999999999999999 887
Q ss_pred eCCC
Q 032726 119 TNSQ 122 (135)
Q Consensus 119 V~~~ 122 (135)
||..
T Consensus 248 vd~~ 251 (459)
T KOG0288|consen 248 VDSL 251 (459)
T ss_pred ccch
Confidence 7753
No 201
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=24.38 E-value=3.1e+02 Score=20.63 Aligned_cols=78 Identities=10% Similarity=-0.013 Sum_probs=46.3
Q ss_pred ccccceEeccCC----cCCCceeeeeeCCCcEEEEecCcEEEEEEcCCCce---eEEeeecCCCCCceeECCCC-CEEEE
Q 032726 39 SMKDLIKLGEGC----VSHPEDVSVVVRKGALYTATNDGWVKYFILHNETL---VNWKHIDSQSLLGLTTTKEG-DVVIC 110 (135)
Q Consensus 39 ~L~~~e~l~~g~----~~GPEdi~avd~~G~lYTg~~dG~I~ri~~~~~~~---~~~~~t~GRPpLGl~fd~~G-~LiVa 110 (135)
-+++++.+...+ -..|-|+ ++.+ .=+-.....+|.-+..-+++. +.+...+|+. +||..|... ..|++
T Consensus 17 v~~~~~~l~~~~~~~~~~~p~si-~lT~--~H~llL~~~~l~~vn~L~~~vV~e~~~~~~~~~~-~gl~~D~~~~t~W~y 92 (147)
T PF05131_consen 17 VLSNAKLLPYSELPNSSSPPLSI-ALTE--FHLLLLYSDRLIAVNRLNNKVVFEESLLETGGKI-LGLCRDPSSNTFWLY 92 (147)
T ss_pred cccchhhcccccCCCCCCCcceE-Eeec--eeeeEEeCCEEEEEEecCCcEEEEEEeccCCcce-eeEEEcCCCCeEEEE
Confidence 345555433322 2448888 5653 233444456777765434432 3456678998 999999765 45544
Q ss_pred eCCCceEEeCC
Q 032726 111 DSKKVRQHTNS 121 (135)
Q Consensus 111 Da~~GLl~V~~ 121 (135)
+...++++..
T Consensus 93 -s~~~I~ei~i 102 (147)
T PF05131_consen 93 -SSNSIFEIVI 102 (147)
T ss_pred -eCCeeEEEEc
Confidence 4557887764
No 202
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=23.97 E-value=3.6e+02 Score=23.33 Aligned_cols=24 Identities=8% Similarity=0.027 Sum_probs=16.3
Q ss_pred eEEeeecCCCCCceeECCCCCEEEEe
Q 032726 86 VNWKHIDSQSLLGLTTTKEGDVVICD 111 (135)
Q Consensus 86 ~~~~~t~GRPpLGl~fd~~G~LiVaD 111 (135)
+..-+..||| =.+||++|-++++-
T Consensus 135 qg~l~~~~~p--i~AfDp~GLifA~~ 158 (311)
T KOG1446|consen 135 QGLLNLSGRP--IAAFDPEGLIFALA 158 (311)
T ss_pred ceEEecCCCc--ceeECCCCcEEEEe
Confidence 3345667888 58999999655433
No 203
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.61 E-value=2.5e+02 Score=24.07 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=0.0
Q ss_pred eeeCCC-cEEEE-----ecCcEEEEEEcCCC--ceeEEeeecCCCCCceeECCCC-CEEEE
Q 032726 59 VVVRKG-ALYTA-----TNDGWVKYFILHNE--TLVNWKHIDSQSLLGLTTTKEG-DVVIC 110 (135)
Q Consensus 59 avd~~G-~lYTg-----~~dG~I~ri~~~~~--~~~~~~~t~GRPpLGl~fd~~G-~LiVa 110 (135)
+|++|| .+||. ...|+|--++..++ +...|..-|=-| -=|.++++| .|+||
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGP-Hel~l~pDG~tLvVA 116 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGP-HELLLMPDGETLVVA 116 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcCh-hhEEEcCCCCEEEEE
No 204
>PRK13613 lipoprotein LpqB; Provisional
Probab=23.54 E-value=5.1e+02 Score=24.07 Aligned_cols=72 Identities=15% Similarity=0.083 Sum_probs=43.1
Q ss_pred CCceeeeeeCCCcEEEEec-CcEEEEEEcCCCcee----EEeeecCCCCCceeECCCCCEEEEeCC-Cc---eEEeCCCC
Q 032726 53 HPEDVSVVVRKGALYTATN-DGWVKYFILHNETLV----NWKHIDSQSLLGLTTTKEGDVVICDSK-KV---RQHTNSQA 123 (135)
Q Consensus 53 GPEdi~avd~~G~lYTg~~-dG~I~ri~~~~~~~~----~~~~t~GRPpLGl~fd~~G~LiVaDa~-~G---Ll~V~~~G 123 (135)
.+++. ++..+|....+.. |+..+++.+-.+..+ ......|+.+.-=.||.+|.++++|.. -| +..+..+|
T Consensus 364 ~~~s~-avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g~vWtvd~~~~~~~vl~v~~~~G 442 (599)
T PRK13613 364 PLRRV-AVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRGDLWVVDRDPADPRLLWLLQGDG 442 (599)
T ss_pred Cccce-EEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCcccCCcCcCCCCEEEecCCCCCceEEEEEcCCC
Confidence 67788 6888888777766 466777643111111 112233444466689999999999872 22 33344555
Q ss_pred eE
Q 032726 124 LI 125 (135)
Q Consensus 124 ~v 125 (135)
..
T Consensus 443 ~~ 444 (599)
T PRK13613 443 EP 444 (599)
T ss_pred cE
Confidence 54
No 205
>PRK12818 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=22.99 E-value=3.6e+02 Score=21.97 Aligned_cols=69 Identities=13% Similarity=0.171 Sum_probs=37.8
Q ss_pred CCCceeeeeeCCCcEEEEecCcEEEEEEcCCCce-----eEEeeecCCCCCceeECC--CCCEEEEeCCCceEEeCCCCe
Q 032726 52 SHPEDVSVVVRKGALYTATNDGWVKYFILHNETL-----VNWKHIDSQSLLGLTTTK--EGDVVICDSKKVRQHTNSQAL 124 (135)
Q Consensus 52 ~GPEdi~avd~~G~lYTg~~dG~I~ri~~~~~~~-----~~~~~t~GRPpLGl~fd~--~G~LiVaDa~~GLl~V~~~G~ 124 (135)
..|=|+ |+..+|.+-.-+.+|.+. ++- +|.. -.+....|.|.||-.-+. .|.+.| + .+=++|++||.
T Consensus 90 g~~lDl-AI~G~GFF~V~~~~G~~~-YTR-~G~F~~d~~G~Lvt~~G~~vlg~~~~~~~~~pI~l-p--~~~i~i~~dG~ 163 (256)
T PRK12818 90 DKPTDF-AIQGRGFFTVERNAGNNY-YTR-DGHFHVDTQGYLVNDSGYYVLGRNNATGAREPINV-G--NGKFSTDADGN 163 (256)
T ss_pred CCcceE-EECCCceEEEEcCCCCeE-Eee-CCCeeECCCCCEEcCCCCEEeccccccCCcCCeEE-C--CCCceECCCCe
Confidence 467788 687777666656667543 322 3321 124555677766632111 134433 3 24577888887
Q ss_pred EE
Q 032726 125 II 126 (135)
Q Consensus 125 v~ 126 (135)
|.
T Consensus 164 i~ 165 (256)
T PRK12818 164 IS 165 (256)
T ss_pred EE
Confidence 74
No 206
>COG5226 CEG1 mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=22.99 E-value=1.3e+02 Score=26.51 Aligned_cols=72 Identities=13% Similarity=0.125 Sum_probs=44.5
Q ss_pred ceEeccCCcCCCceeeeeeCCCcEEEEecCcEEEEEEcCCCceeEEeeecCCCCCceeECCCCC-EEEEeCCCceEEeCC
Q 032726 43 LIKLGEGCVSHPEDVSVVVRKGALYTATNDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGD-VVICDSKKVRQHTNS 121 (135)
Q Consensus 43 ~e~l~~g~~~GPEdi~avd~~G~lYTg~~dG~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~-LiVaDa~~GLl~V~~ 121 (135)
.++|.+= -+|-..+ +|.+....|+..+||-+++|.+..-..-.|.-+ |-+.+..+|+ =|+|-+.+||-.+..
T Consensus 210 ~k~ip~L-~HgnDGL-IFTp~~~PY~~Gkd~~lLKWKP~~~NTiDF~lv-----l~~~~~e~~Dyny~~~p~f~l~Vw~g 282 (404)
T COG5226 210 YKKIPEL-KHGNDGL-IFTPADEPYSVGKDGALLKWKPASLNTIDFRLV-----LHKKWSEVDDYNYVCSPKFGLDVWFG 282 (404)
T ss_pred Hhhcccc-cCCCCce-EeccCCCCcccCccceeeecCccccCceeeeee-----eccccccccCcceeecccccccEEec
Confidence 3445542 3788888 899888999999999999997633232233221 2222223333 266777777766554
No 207
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=22.62 E-value=3.2e+02 Score=23.44 Aligned_cols=64 Identities=14% Similarity=0.218 Sum_probs=42.4
Q ss_pred CCCceeeeeeCCCcEEEEecCcEEEEEEcCCCceeEEeeecCCCCCceeECCCCCEEEEeCCCceEEe
Q 032726 52 SHPEDVSVVVRKGALYTATNDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVVICDSKKVRQHT 119 (135)
Q Consensus 52 ~GPEdi~avd~~G~lYTg~~dG~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~LiVaDa~~GLl~V 119 (135)
.|=-|| .+ .+-.|.+|+.||++.+++-..|+.. ..-=|.|.--+.|.++||-..+-..-+.+++
T Consensus 146 D~V~Si-~v-~~heIvaGS~DGtvRtydiR~G~l~--sDy~g~pit~vs~s~d~nc~La~~l~stlrL 209 (307)
T KOG0316|consen 146 DGVSSI-DV-AEHEIVAGSVDGTVRTYDIRKGTLS--SDYFGHPITSVSFSKDGNCSLASSLDSTLRL 209 (307)
T ss_pred CceeEE-Ee-cccEEEeeccCCcEEEEEeecceee--hhhcCCcceeEEecCCCCEEEEeeccceeee
Confidence 344455 23 3458999999999999876544321 2334667667888899987766666555554
No 208
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=22.51 E-value=1.2e+02 Score=25.44 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=16.9
Q ss_pred eeCCC-cEEEEecCcEEEEEEcC
Q 032726 60 VVRKG-ALYTATNDGWVKYFILH 81 (135)
Q Consensus 60 vd~~G-~lYTg~~dG~I~ri~~~ 81 (135)
.|.-| .+...+.||+|+|+.+.
T Consensus 6 ~~~~GC~i~v~~~~g~i~ri~~~ 28 (375)
T cd02773 6 LDAVGSNIRVDTRGGEVMRILPR 28 (375)
T ss_pred CCCCCCceEEEEeCCEEEEEeCC
Confidence 34445 68888899999999763
No 209
>COG3168 PilP Tfp pilus assembly protein PilP [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.45 E-value=65 Score=25.49 Aligned_cols=15 Identities=27% Similarity=0.173 Sum_probs=12.9
Q ss_pred EEEEecCcEEEEEEc
Q 032726 66 LYTATNDGWVKYFIL 80 (135)
Q Consensus 66 lYTg~~dG~I~ri~~ 80 (135)
-|-|-+||||.||+.
T Consensus 127 ~YlGqN~GrV~rI~d 141 (170)
T COG3168 127 QYLGQNYGRVVRITD 141 (170)
T ss_pred cEeeccCceEEEecC
Confidence 478999999999964
No 210
>PF04351 PilP: Pilus assembly protein, PilP; InterPro: IPR007446 The PilP family are periplasmic proteins involved in the biogenesis of type IV pili [].; PDB: 2Y4Y_B 2Y4X_A 2IVW_A 2LC4_A.
Probab=22.25 E-value=64 Score=24.20 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=19.8
Q ss_pred CCCceeeeeeCCCcEEE-------EecCcEEEEEEc
Q 032726 52 SHPEDVSVVVRKGALYT-------ATNDGWVKYFIL 80 (135)
Q Consensus 52 ~GPEdi~avd~~G~lYT-------g~~dG~I~ri~~ 80 (135)
.....+ +-+++|.+|. |.+.|+|.+|+.
T Consensus 89 ~~~~AL-v~~pdg~v~~V~~G~yiG~n~G~I~~Is~ 123 (149)
T PF04351_consen 89 GQPWAL-VQDPDGKVYRVKVGDYIGQNYGRITSISE 123 (149)
T ss_dssp TEEEEE-EEE-TTEEEEEETTEEETTTTEEEEEEET
T ss_pred CEEEEE-EEeCCCCEEEecCCCEeccCCCEEEEEeC
Confidence 456666 5667888765 567999999964
No 211
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=22.10 E-value=2.6e+02 Score=26.90 Aligned_cols=56 Identities=11% Similarity=0.248 Sum_probs=37.9
Q ss_pred CCcEEEEecCcEEEEEEcCCCceeEEeeecCCCCCceeECCCCCEEEEeCCCceEEe
Q 032726 63 KGALYTATNDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGDVVICDSKKVRQHT 119 (135)
Q Consensus 63 ~G~lYTg~~dG~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~LiVaDa~~GLl~V 119 (135)
|..+.+|+-||+|.=|.-.+.++..|..+..=- =.+.|-++|+-.|+=.+.|..++
T Consensus 422 DryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lI-TAvcy~PdGk~avIGt~~G~C~f 477 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISDKKVVDWNDLRDLI-TAVCYSPDGKGAVIGTFNGYCRF 477 (712)
T ss_pred CCcEeecccccceEEeecCcCeeEeehhhhhhh-eeEEeccCCceEEEEEeccEEEE
Confidence 557999999999866655555555554333222 34445558998899999998765
No 212
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=22.08 E-value=4e+02 Score=23.02 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=30.3
Q ss_pred CCcEEEEecCcEEEEEEcC-CCceeEEeeecCC--CCCceeECCCCC
Q 032726 63 KGALYTATNDGWVKYFILH-NETLVNWKHIDSQ--SLLGLTTTKEGD 106 (135)
Q Consensus 63 ~G~lYTg~~dG~I~ri~~~-~~~~~~~~~t~GR--PpLGl~fd~~G~ 106 (135)
.+-|+++..|-.|.-+... +..|+-.+...|+ ..-.+.||+.|+
T Consensus 162 ~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~ 208 (312)
T KOG0645|consen 162 EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS 208 (312)
T ss_pred cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc
Confidence 3568888899988777654 4556655666665 236788888884
No 213
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=22.05 E-value=4.9e+02 Score=24.99 Aligned_cols=55 Identities=15% Similarity=0.224 Sum_probs=32.9
Q ss_pred cEEEEecCcEEEEEEcCCC-c------eeEE-eeecCCCCCceeECCC-CCEEEEeCCCceEEeC
Q 032726 65 ALYTATNDGWVKYFILHNE-T------LVNW-KHIDSQSLLGLTTTKE-GDVVICDSKKVRQHTN 120 (135)
Q Consensus 65 ~lYTg~~dG~I~ri~~~~~-~------~~~~-~~t~GRPpLGl~fd~~-G~LiVaDa~~GLl~V~ 120 (135)
-+|-|+.+|+|.|+-.... . .|.+ .....-|...|..+.+ +.|||. ..-|+.+|.
T Consensus 427 VlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~~~~~LyVg-s~~gV~qvp 490 (737)
T KOG3611|consen 427 VLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSSKRGSLYVG-SRSGVVQVP 490 (737)
T ss_pred EEEEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeEEEecccCCeEEEE-ccCcEEEee
Confidence 3999999999999744222 1 1222 1222356678888854 456654 445666654
No 214
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=21.91 E-value=3.3e+02 Score=25.13 Aligned_cols=71 Identities=14% Similarity=0.166 Sum_probs=0.0
Q ss_pred eeeeee--CCC-cEEEEecCcEEEEEEcCCCceeEEeeecCCCCCceeECCCCC-EEEEeCCCceEEeC-CCCeEEE
Q 032726 56 DVSVVV--RKG-ALYTATNDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKEGD-VVICDSKKVRQHTN-SQALIIV 127 (135)
Q Consensus 56 di~avd--~~G-~lYTg~~dG~I~ri~~~~~~~~~~~~t~GRPpLGl~fd~~G~-LiVaDa~~GLl~V~-~~G~v~v 127 (135)
|++.+| .+| .|-||..||.+.-|+.+......+.+-.|-- +-|.+.++|+ ++-++..+-..-.| ..|++..
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI-~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPI-FSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCce-EEEEEcCCCCEEEeccCCccEEEEeccCceEEE
No 215
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=21.85 E-value=1.2e+02 Score=20.02 Aligned_cols=23 Identities=13% Similarity=0.092 Sum_probs=11.1
Q ss_pred hHHHHHHHHHH-HHHhhhCCCCcc
Q 032726 4 KSFLLACLLAF-TLQFFFSPPVSS 26 (135)
Q Consensus 4 ~~~~~~~~la~-~~~l~~~~pi~P 26 (135)
++.+++.+++| |.++..-.|-.|
T Consensus 14 ~~~lLiliis~~f~lI~~l~qq~~ 37 (61)
T PF06692_consen 14 SGPLLILIISFVFFLITSLGQQGN 37 (61)
T ss_pred hhHHHHHHHHHHHHHHhhhccCCC
Confidence 45566666666 333333343333
No 216
>PF15240 Pro-rich: Proline-rich
Probab=21.63 E-value=59 Score=25.94 Aligned_cols=12 Identities=33% Similarity=0.426 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHH
Q 032726 5 SFLLACLLAFTL 16 (135)
Q Consensus 5 ~~~~~~~la~~~ 16 (135)
+||+||||||.+
T Consensus 4 VLLSvALLALSS 15 (179)
T PF15240_consen 4 VLLSVALLALSS 15 (179)
T ss_pred HHHHHHHHHhhh
Confidence 455566665543
No 217
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=21.47 E-value=2.3e+02 Score=25.92 Aligned_cols=63 Identities=13% Similarity=0.100 Sum_probs=45.0
Q ss_pred eeeeeeCCCc-EEEEecCcEEEEEEcCCC-ceeEEeeecCCCCCceeEC-CCCCEEEEeCCCceEEeC
Q 032726 56 DVSVVVRKGA-LYTATNDGWVKYFILHNE-TLVNWKHIDSQSLLGLTTT-KEGDVVICDSKKVRQHTN 120 (135)
Q Consensus 56 di~avd~~G~-lYTg~~dG~I~ri~~~~~-~~~~~~~t~GRPpLGl~fd-~~G~LiVaDa~~GLl~V~ 120 (135)
.+ ++..||+ +-||..|-.|.-|+..+. ...+|+..+|-- .|++|- .+.+||.+-+.+++=.++
T Consensus 207 ~~-avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V-~~L~fr~gt~~lys~s~Drsvkvw~ 272 (479)
T KOG0299|consen 207 TL-AVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAV-SSLAFRKGTSELYSASADRSVKVWS 272 (479)
T ss_pred EE-EEcCCCcEEEecCCCceEEEecCcccchhhcccccccce-eeeeeecCccceeeeecCCceEEEe
Confidence 35 4678884 778888877766654332 345677778877 899995 567899999988876555
No 218
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=21.39 E-value=72 Score=21.68 Aligned_cols=20 Identities=15% Similarity=0.356 Sum_probs=14.2
Q ss_pred cCCCCCceeECCCC-CEEEEeC
Q 032726 92 DSQSLLGLTTTKEG-DVVICDS 112 (135)
Q Consensus 92 ~GRPpLGl~fd~~G-~LiVaDa 112 (135)
.+.- +|+.||+++ ++.+.|.
T Consensus 82 ~~ad-~g~~~DgDaDRl~~vd~ 102 (104)
T PF02879_consen 82 SGAD-LGIAFDGDADRLGVVDE 102 (104)
T ss_dssp STTS-EEEEE-TTSSBEEEEET
T ss_pred cCce-EEEEECCcCceeEEECC
Confidence 3556 999999987 5777764
No 219
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=21.32 E-value=1.3e+02 Score=27.04 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=18.4
Q ss_pred CCCcEEEEecCcEEEEEEcCCC
Q 032726 62 RKGALYTATNDGWVKYFILHNE 83 (135)
Q Consensus 62 ~~G~lYTg~~dG~I~ri~~~~~ 83 (135)
-|+.+|||++|+.|.-|+...+
T Consensus 288 ~dpqvit~S~D~tvrlWDl~ag 309 (460)
T KOG0285|consen 288 TDPQVITGSHDSTVRLWDLRAG 309 (460)
T ss_pred CCCceEEecCCceEEEeeeccC
Confidence 3889999999999988876544
No 220
>PRK12692 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=21.18 E-value=4.6e+02 Score=21.42 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=15.3
Q ss_pred CCCceeeeeeCCCcEEEEecCcEE
Q 032726 52 SHPEDVSVVVRKGALYTATNDGWV 75 (135)
Q Consensus 52 ~GPEdi~avd~~G~lYTg~~dG~I 75 (135)
-.|=|+ +++.+|.+..-+.+|.+
T Consensus 90 g~~lD~-AI~G~GFF~V~~~~G~~ 112 (262)
T PRK12692 90 GNQLDL-AVNGRGYFQVTSPNGEI 112 (262)
T ss_pred CCcceE-EEcCCceEEEECCCCCe
Confidence 467788 68777766555667754
No 221
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=20.87 E-value=2.1e+02 Score=27.81 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=20.4
Q ss_pred eeeeeeCCC-cEEEEecCcEEEEEEcC
Q 032726 56 DVSVVVRKG-ALYTATNDGWVKYFILH 81 (135)
Q Consensus 56 di~avd~~G-~lYTg~~dG~I~ri~~~ 81 (135)
++ +-.++| .+-|-++||+|.-+++.
T Consensus 725 ~~-AWSpdGr~~AtVcKDg~~rVy~Pr 750 (1012)
T KOG1445|consen 725 GI-AWSPDGRRIATVCKDGTLRVYEPR 750 (1012)
T ss_pred EE-EECCCCcceeeeecCceEEEeCCC
Confidence 78 577888 58888999999888763
No 222
>PF12124 Nsp3_PL2pro: Coronavirus polyprotein cleavage domain; InterPro: IPR022733 This domain is found in SARS coronaviruses, and is about 70 amino acids in length. It is found associated with various other coronavirus proteins due to the polyprotein nature of most viral translation. PL2pro is a domain of the non-structural protein nsp3. The domain performs three of the cleavages required to separate the translated polyprotein into its distinct proteins. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity, 0016788 hydrolase activity, acting on ester bonds, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2KAF_A 2KQW_A.
Probab=20.70 E-value=49 Score=21.91 Aligned_cols=41 Identities=15% Similarity=0.307 Sum_probs=21.3
Q ss_pred eEEeeecCCCCCceeECCCCCEEEEeCCCceEEeCCCCeEE
Q 032726 86 VNWKHIDSQSLLGLTTTKEGDVVICDSKKVRQHTNSQALII 126 (135)
Q Consensus 86 ~~~~~t~GRPpLGl~fd~~G~LiVaDa~~GLl~V~~~G~v~ 126 (135)
..|...|-|.-||+.|-+.|+-||--..--....--+|.|.
T Consensus 16 ~dwsysgqrtelgveflkrgdkivyht~~~~iefh~~gevl 56 (66)
T PF12124_consen 16 RDWSYSGQRTELGVEFLKRGDKIVYHTVENPIEFHMDGEVL 56 (66)
T ss_dssp TTEE----EETTEEEEEEETTEEEEE-SSSS--EEETTEEE
T ss_pred cccccccceehhhhHHHhcCCEEEEEecCCceEEEecCcEe
Confidence 34545555555888888888777765555444444556554
No 223
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=20.57 E-value=4e+02 Score=23.38 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=39.3
Q ss_pred eeeeeeC-CC-cEEEEecCcEEEEEEcCC-Cce--eEEeeecCCCCCceeECCCCC-EEEEeCCCceEEeC
Q 032726 56 DVSVVVR-KG-ALYTATNDGWVKYFILHN-ETL--VNWKHIDSQSLLGLTTTKEGD-VVICDSKKVRQHTN 120 (135)
Q Consensus 56 di~avd~-~G-~lYTg~~dG~I~ri~~~~-~~~--~~~~~t~GRPpLGl~fd~~G~-LiVaDa~~GLl~V~ 120 (135)
++ +|.+ .. .+-+|+-||.|.-|+..+ +.. +......| |+|-..+..+|+ ++..++.+-+-..|
T Consensus 32 ~l-~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~-PvL~v~WsddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 32 AL-AFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDG-PVLDVCWSDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred ee-EeccccCceEEecccCCceEEEEEecCCcccchhhhccCC-CeEEEEEccCCceEEeeccCCceEEEE
Confidence 35 4664 33 455899999876665533 221 22234456 459999999996 56777777665555
No 224
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=20.34 E-value=95 Score=20.85 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=13.8
Q ss_pred CchhHHHHHHHHHHHHHhhhC
Q 032726 1 MAPKSFLLACLLAFTLQFFFS 21 (135)
Q Consensus 1 ~~~~~~~~~~~la~~~~l~~~ 21 (135)
||-+.++ +++|++.+..+..
T Consensus 1 MA~Kl~v-ialLC~aLva~vQ 20 (65)
T PF10731_consen 1 MASKLIV-IALLCVALVAIVQ 20 (65)
T ss_pred CcchhhH-HHHHHHHHHHHHh
Confidence 7777665 7777777766544
No 225
>PTZ00420 coronin; Provisional
Probab=20.20 E-value=5.6e+02 Score=23.63 Aligned_cols=53 Identities=8% Similarity=-0.073 Sum_probs=30.6
Q ss_pred CceeeeeeCC-C-cEEEEecCcEEEEEEcCCCce--e-------EEeeecCCCCCceeECCCCCEE
Q 032726 54 PEDVSVVVRK-G-ALYTATNDGWVKYFILHNETL--V-------NWKHIDSQSLLGLTTTKEGDVV 108 (135)
Q Consensus 54 PEdi~avd~~-G-~lYTg~~dG~I~ri~~~~~~~--~-------~~~~t~GRPpLGl~fd~~G~Li 108 (135)
--++ .+.++ + .+.||..||.|.-|+.+++.. + .+..-.++- -.++|+++++.+
T Consensus 77 V~~l-afsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V-~sVaf~P~g~~i 140 (568)
T PTZ00420 77 ILDL-QFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI-SIIDWNPMNYYI 140 (568)
T ss_pred EEEE-EEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE-EEEEECCCCCeE
Confidence 3566 46654 3 689999999998776543211 1 111112333 567788776543
No 226
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=20.01 E-value=3.7e+02 Score=25.78 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=21.0
Q ss_pred ceeeeeeCCCcEEEEecCcEEEEEEcCC
Q 032726 55 EDVSVVVRKGALYTATNDGWVKYFILHN 82 (135)
Q Consensus 55 Edi~avd~~G~lYTg~~dG~I~ri~~~~ 82 (135)
|++ +..+.|+++....+|.|..|+..+
T Consensus 73 E~L-~W~e~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 73 ESL-AWAEGGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred eeE-EEccCCeEEeecCCceEEEEeccc
Confidence 456 455688999999999998887643
Done!