Query 032727
Match_columns 135
No_of_seqs 104 out of 324
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 07:58:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032727.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032727hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_Y RP50, 40S ribosomal pro 100.0 1.3E-58 4.6E-63 348.0 11.5 131 1-134 1-132 (135)
2 2xzm_P RPS24E; ribosome, trans 100.0 4.6E-57 1.6E-61 344.1 11.9 129 6-135 2-130 (149)
3 3iz6_U 40S ribosomal protein S 100.0 4.9E-59 1.7E-63 351.4 0.1 131 5-135 8-138 (138)
4 2v94_A RPS24, 30S ribosomal pr 100.0 8.6E-45 2.9E-49 263.8 11.5 97 6-103 8-104 (107)
5 2g1d_A 30S ribosomal protein S 100.0 2.2E-44 7.7E-49 258.1 10.1 95 8-103 2-96 (98)
6 1xn9_A 30S ribosomal protein S 100.0 3.2E-43 1.1E-47 253.3 11.9 93 8-102 2-94 (101)
7 1ywx_A 30S ribosomal protein S 100.0 7.4E-43 2.5E-47 251.8 12.3 93 8-102 2-94 (102)
8 2dgw_A Probable RNA-binding pr 78.6 9.8 0.00034 23.8 6.9 45 35-87 20-65 (91)
9 2cpf_A RNA binding motif prote 74.3 14 0.00047 23.4 7.4 50 35-87 15-65 (98)
10 3p5t_L Cleavage and polyadenyl 68.4 13 0.00046 23.3 5.5 47 35-87 11-60 (90)
11 3ue2_A Poly(U)-binding-splicin 63.4 12 0.00041 25.9 4.8 47 39-87 39-86 (118)
12 2dng_A Eukaryotic translation 62.6 14 0.00046 23.8 4.7 47 35-88 25-72 (103)
13 2dhg_A TRNA selenocysteine ass 62.4 27 0.00093 22.2 8.4 47 35-87 19-66 (104)
14 2d9p_A Polyadenylate-binding p 62.3 17 0.00059 23.2 5.2 45 35-87 25-70 (103)
15 2dnh_A Bruno-like 5, RNA bindi 62.1 28 0.00095 22.2 6.2 46 35-87 25-71 (105)
16 2dh8_A DAZ-associated protein 61.4 27 0.00091 22.3 6.0 47 35-87 26-73 (105)
17 3nmr_A Cugbp ELAV-like family 59.9 34 0.0012 23.1 6.6 49 35-87 13-62 (175)
18 3dxb_A Thioredoxin N-terminall 59.8 11 0.00037 27.8 4.3 30 58-87 160-190 (222)
19 2dha_A FLJ20171 protein; RRM d 58.4 18 0.00063 25.0 5.0 54 26-86 25-82 (123)
20 2lxi_A RNA-binding protein 10; 58.4 21 0.0007 22.8 5.0 47 35-87 11-59 (91)
21 1p27_B RNA-binding protein 8A; 58.3 33 0.0011 21.8 8.5 47 35-87 33-80 (106)
22 2cpz_A CUG triplet repeat RNA- 58.2 35 0.0012 22.2 6.8 47 35-87 35-82 (115)
23 4fxv_A ELAV-like protein 1; RN 55.3 40 0.0014 21.8 8.4 67 12-87 9-76 (99)
24 1p1t_A Cleavage stimulation fa 55.0 37 0.0013 21.4 6.5 47 35-87 18-65 (104)
25 2pe8_A Splicing factor 45; RRM 54.9 30 0.001 23.0 5.5 44 38-86 26-70 (105)
26 2cpx_A Hypothetical protein FL 54.2 20 0.00069 23.3 4.5 47 35-87 35-82 (115)
27 2mss_A Protein (musashi1); RNA 52.9 23 0.0008 21.1 4.3 48 35-88 9-57 (75)
28 2ek1_A RNA-binding protein 12; 52.5 39 0.0013 20.9 6.7 47 35-87 25-72 (95)
29 1oo0_B CG8781-PA, drosophila Y 52.2 44 0.0015 21.4 6.3 47 35-87 36-83 (110)
30 1jmt_A Splicing factor U2AF 35 51.2 16 0.00054 24.3 3.6 34 48-87 49-83 (104)
31 1u6f_A Tcubp1, RNA-binding pro 50.9 53 0.0018 22.0 8.8 47 35-87 52-99 (139)
32 2x1f_A MRNA 3'-END-processing 50.7 44 0.0015 21.0 6.2 47 35-87 12-59 (96)
33 1s79_A Lupus LA protein; RRM, 50.4 29 0.00099 22.9 4.8 46 35-87 21-67 (103)
34 2fy1_A RNA-binding motif prote 49.4 36 0.0012 22.6 5.2 46 35-87 17-63 (116)
35 1fj7_A Nucleolin RBD1, protein 49.2 7.7 0.00026 24.9 1.7 53 27-87 20-73 (101)
36 1uaw_A Mouse-musashi-1; RNP-ty 48.7 20 0.00069 21.4 3.5 46 35-86 10-56 (77)
37 1x5s_A Cold-inducible RNA-bind 48.7 34 0.0011 21.6 4.8 47 35-87 22-69 (102)
38 3s8s_A Histone-lysine N-methyl 48.1 57 0.002 21.6 8.2 47 35-87 16-63 (110)
39 2cqp_A RNA-binding protein 12; 48.0 48 0.0017 20.7 7.0 47 35-87 25-72 (98)
40 2cqg_A TDP-43, TAR DNA-binding 47.7 51 0.0017 20.9 8.2 47 35-87 25-72 (103)
41 1wez_A HnRNP H', FTP-3, hetero 47.3 30 0.001 22.6 4.4 44 35-86 25-69 (102)
42 2hvz_A Splicing factor, argini 46.7 52 0.0018 20.7 5.5 42 35-87 10-52 (101)
43 2cq0_A Eukaryotic translation 46.4 53 0.0018 20.7 6.4 47 35-87 25-72 (103)
44 2cph_A RNA binding motif prote 46.1 52 0.0018 20.8 5.5 47 35-87 25-73 (107)
45 2cqh_A IGF-II mRNA-binding pro 45.8 52 0.0018 20.4 5.6 41 35-87 18-59 (93)
46 2cqd_A RNA-binding region cont 45.8 59 0.002 21.1 6.0 47 35-87 27-74 (116)
47 2dgv_A HnRNP M, heterogeneous 45.8 50 0.0017 20.3 7.2 45 35-87 18-63 (92)
48 1wel_A RNA-binding protein 12; 45.3 40 0.0014 22.4 4.9 45 35-85 35-80 (124)
49 2dis_A Unnamed protein product 45.1 58 0.002 20.7 6.0 49 35-87 18-67 (109)
50 1x5u_A Splicing factor 3B subu 44.2 58 0.002 20.6 5.5 47 35-87 25-72 (105)
51 1l3k_A Heterogeneous nuclear r 43.8 77 0.0026 21.8 8.2 47 35-87 114-161 (196)
52 2dgs_A DAZ-associated protein 43.6 58 0.002 20.4 5.5 48 35-88 20-68 (99)
53 1x4b_A Heterogeneous nuclear r 43.4 36 0.0012 22.2 4.4 47 35-87 37-84 (116)
54 2cq3_A RNA-binding protein 9; 43.1 61 0.0021 20.4 5.6 45 35-87 25-70 (103)
55 2dnz_A Probable RNA-binding pr 43.0 57 0.002 20.1 6.3 47 35-87 15-62 (95)
56 2dgp_A Bruno-like 4, RNA bindi 42.9 38 0.0013 21.6 4.4 47 35-87 23-70 (106)
57 2kxn_B Transformer-2 protein h 42.7 47 0.0016 22.6 5.1 47 35-87 56-103 (129)
58 3pgw_A U1-A; protein-RNA compl 42.6 91 0.0031 23.2 7.1 48 35-87 19-67 (282)
59 2cqc_A Arginine/serine-rich sp 42.5 58 0.002 20.0 8.0 47 35-87 25-72 (95)
60 2ku7_A MLL1 PHD3-CYP33 RRM chi 42.4 72 0.0024 21.1 6.2 47 35-87 73-120 (140)
61 1wxv_A BAG-family molecular ch 42.1 57 0.0019 20.7 5.1 26 36-61 31-56 (92)
62 1nu4_A U1A RNA binding domain; 42.0 20 0.00069 22.5 2.8 48 35-87 18-66 (97)
63 3n9u_C Cleavage and polyadenyl 41.4 91 0.0031 22.0 8.9 49 35-87 65-114 (156)
64 2rs2_A Musashi-1, RNA-binding 41.3 47 0.0016 21.7 4.7 47 35-87 35-82 (109)
65 3ex7_B RNA-binding protein 8A; 41.2 65 0.0022 21.1 5.5 47 35-87 32-79 (126)
66 2pq0_A Hypothetical conserved 40.9 34 0.0012 25.0 4.3 33 26-62 174-206 (258)
67 2ki2_A SS-DNA binding protein 40.7 16 0.00053 22.7 2.1 49 35-89 11-60 (90)
68 1whw_A Hypothetical protein ri 40.7 65 0.0022 20.1 6.0 47 35-87 18-65 (99)
69 3bs9_A Nucleolysin TIA-1 isofo 40.7 59 0.002 19.6 8.6 47 35-87 16-63 (87)
70 2db1_A Heterogeneous nuclear r 40.6 54 0.0018 21.8 5.0 55 26-87 19-76 (118)
71 2xs2_A Deleted in azoospermia- 40.5 67 0.0023 20.2 6.7 45 35-86 19-64 (102)
72 2kt5_A RNA and export factor-b 40.4 62 0.0021 21.3 5.3 46 35-87 45-91 (124)
73 2do4_A Squamous cell carcinoma 40.3 67 0.0023 20.1 7.9 47 35-88 27-74 (100)
74 4f25_A Polyadenylate-binding p 40.1 77 0.0026 20.7 7.7 45 35-87 15-60 (115)
75 3md3_A Nuclear and cytoplasmic 40.1 79 0.0027 20.9 8.2 47 35-87 97-144 (166)
76 2a3j_A U1 small nuclear ribonu 40.0 31 0.0011 23.9 3.8 44 35-86 39-86 (127)
77 1h2v_Z 20 kDa nuclear CAP bind 39.5 89 0.0031 21.4 8.6 47 35-87 49-96 (156)
78 2cqi_A Nucleolysin TIAR; RNA r 39.4 67 0.0023 20.2 5.2 45 35-87 25-70 (103)
79 1x5o_A RNA binding motif, sing 39.4 75 0.0026 20.4 5.8 46 35-87 35-81 (114)
80 1iqt_A AUF1, heterogeneous nuc 39.3 11 0.00038 22.5 1.2 47 35-87 9-56 (75)
81 3fzq_A Putative hydrolase; YP_ 38.7 48 0.0016 24.1 4.8 26 36-62 198-223 (274)
82 4a17_R RPL23A, 60S ribosomal p 38.7 1.2E+02 0.0041 22.5 7.3 57 23-88 88-147 (150)
83 2zws_A Neutral ceramidase; pri 38.2 22 0.00075 31.8 3.3 44 26-70 58-103 (646)
84 3sde_A Paraspeckle component 1 38.0 78 0.0027 23.7 6.1 46 35-87 106-152 (261)
85 2dgo_A Cytotoxic granule-assoc 37.9 80 0.0027 20.3 8.6 47 35-87 25-72 (115)
86 3tve_T 50S ribosomal protein L 37.4 66 0.0023 21.7 5.0 45 13-64 12-56 (92)
87 2la6_A RNA-binding protein FUS 37.3 76 0.0026 19.9 7.0 47 35-87 23-78 (99)
88 2d9o_A DNAJ (HSP40) homolog, s 37.2 24 0.00083 23.6 2.7 41 35-86 27-68 (100)
89 3s7r_A Heterogeneous nuclear r 37.1 70 0.0024 19.4 7.7 47 35-87 21-68 (87)
90 3d2w_A TAR DNA-binding protein 36.6 36 0.0012 21.5 3.5 50 27-88 14-64 (89)
91 1wg1_A KIAA1579 protein, homol 36.5 26 0.00087 21.9 2.7 40 35-87 15-55 (88)
92 1fjc_A Nucleolin RBD2, protein 36.5 35 0.0012 21.3 3.3 42 35-87 26-68 (96)
93 3iz5_X 60S ribosomal protein L 36.4 1.3E+02 0.0044 22.4 6.8 62 18-88 84-149 (152)
94 2cq4_A RNA binding motif prote 36.3 68 0.0023 20.7 4.9 47 35-87 35-82 (114)
95 3u5e_X 60S ribosomal protein L 36.3 1.3E+02 0.0043 22.1 7.3 60 19-87 75-138 (142)
96 2cqb_A Peptidyl-prolyl CIS-tra 36.2 39 0.0013 21.3 3.6 47 35-87 22-69 (102)
97 4a8x_A RNA-binding protein wit 35.9 40 0.0014 20.4 3.5 48 35-87 14-62 (88)
98 2dnm_A SRP46 splicing factor; 35.6 52 0.0018 20.8 4.1 46 35-86 23-69 (103)
99 1x4e_A RNA binding motif, sing 35.4 44 0.0015 20.3 3.6 48 35-88 15-63 (85)
100 2io0_B Small ubiquitin-related 35.3 95 0.0032 20.4 6.6 51 1-62 1-51 (91)
101 2hgl_A HNRPF protein, heteroge 35.2 1.1E+02 0.0038 21.2 6.3 54 27-87 47-103 (136)
102 2kn4_A Immunoglobulin G-bindin 35.1 97 0.0033 21.0 5.8 53 28-87 74-127 (158)
103 2div_A TRNA selenocysteine ass 35.1 81 0.0028 19.6 6.8 47 35-87 19-67 (99)
104 2khc_A Testis-specific RNP-typ 34.6 51 0.0017 21.4 4.0 47 35-87 50-97 (118)
105 2dnn_A RNA-binding protein 12; 34.5 50 0.0017 22.1 4.1 54 25-87 17-71 (109)
106 3ulh_A THO complex subunit 4; 34.5 87 0.003 19.8 8.3 46 35-87 39-85 (107)
107 2qlc_A DNA repair protein RADC 34.5 33 0.0011 24.3 3.2 36 25-60 71-112 (126)
108 2e5h_A Zinc finger CCHC-type a 33.8 63 0.0022 19.9 4.3 47 35-87 26-73 (94)
109 1x4c_A Splicing factor, argini 33.6 62 0.0021 20.9 4.3 49 24-86 15-64 (108)
110 1x4h_A RNA-binding protein 28; 33.6 92 0.0031 19.7 5.9 47 35-87 25-72 (111)
111 2err_A Ataxin-2-binding protei 33.3 55 0.0019 21.3 4.0 45 35-87 39-84 (109)
112 2cpe_A RNA-binding protein EWS 33.2 40 0.0014 21.8 3.3 47 35-87 25-80 (113)
113 2e5j_A Methenyltetrahydrofolat 32.8 84 0.0029 19.6 4.8 42 35-87 29-71 (97)
114 1x5t_A Splicing factor 3B subu 32.6 64 0.0022 19.9 4.1 47 35-87 15-63 (96)
115 2krb_A Eukaryotic translation 32.5 21 0.00071 21.9 1.7 42 38-87 20-62 (81)
116 1wf1_A RNA-binding protein RAL 32.1 98 0.0033 19.8 5.1 36 37-86 40-76 (110)
117 3dnp_A Stress response protein 32.1 55 0.0019 24.2 4.3 31 28-62 195-225 (290)
118 2ywk_A Putative RNA-binding pr 31.9 90 0.0031 19.1 8.0 46 35-87 26-72 (95)
119 3r4c_A Hydrolase, haloacid deh 31.7 58 0.002 23.8 4.3 32 27-62 186-217 (268)
120 3ucg_A Polyadenylate-binding p 31.2 89 0.003 18.9 7.1 47 35-87 16-63 (89)
121 2f3j_A RNA and export factor b 31.2 70 0.0024 23.0 4.6 46 35-87 98-144 (177)
122 3q2s_C Cleavage and polyadenyl 31.0 1.7E+02 0.0057 21.9 7.8 54 27-86 71-126 (229)
123 2jrs_A RNA-binding protein 39; 31.0 1.1E+02 0.0037 19.8 8.6 48 35-88 36-84 (108)
124 1v6e_A Cytoskeleton-associated 30.8 94 0.0032 20.0 4.9 21 35-56 27-47 (95)
125 2fc8_A NCL protein; structure 30.3 56 0.0019 20.5 3.6 44 35-87 25-69 (102)
126 2dnl_A Cytoplasmic polyadenyla 30.2 27 0.00091 23.0 2.0 49 35-87 18-67 (114)
127 2cpy_A RNA-binding protein 12; 30.2 42 0.0014 22.0 3.0 48 35-88 25-73 (114)
128 3ns6_A Eukaryotic translation 30.0 98 0.0034 19.6 4.8 20 68-87 49-69 (100)
129 1wf0_A TDP-43, TAR DNA-binding 29.9 38 0.0013 20.9 2.6 43 35-88 15-58 (88)
130 1nrw_A Hypothetical protein, h 29.6 62 0.0021 24.2 4.2 33 26-62 207-239 (288)
131 1nf2_A Phosphatase; structural 29.6 64 0.0022 23.9 4.3 32 27-62 182-213 (268)
132 3abf_A 4-oxalocrotonate tautom 29.3 46 0.0016 19.4 2.8 33 27-60 4-41 (64)
133 1x5p_A Negative elongation fac 29.1 26 0.00087 22.2 1.7 40 36-87 24-64 (97)
134 2la4_A Nuclear and cytoplasmic 29.0 83 0.0029 19.7 4.3 41 35-87 37-78 (101)
135 1t0y_A Tubulin folding cofacto 28.7 1.2E+02 0.004 20.7 5.3 22 35-57 26-47 (122)
136 3ftb_A Histidinol-phosphate am 28.6 50 0.0017 24.9 3.6 26 35-61 59-84 (361)
137 3m1y_A Phosphoserine phosphata 28.3 40 0.0014 23.3 2.8 65 37-102 141-205 (217)
138 2raq_A Conserved protein MTH88 28.2 1.1E+02 0.0036 21.3 4.8 40 23-65 7-46 (97)
139 3mpo_A Predicted hydrolase of 28.2 69 0.0023 23.5 4.2 25 37-62 196-220 (279)
140 4dw8_A Haloacid dehalogenase-l 28.2 72 0.0025 23.4 4.3 25 37-62 196-220 (279)
141 1iv3_A 2-C-methyl-D-erythritol 28.1 50 0.0017 24.7 3.3 34 27-62 98-131 (152)
142 1rk8_A CG8781-PA, CG8781-PA pr 28.0 1.5E+02 0.0052 20.5 9.0 47 35-87 82-129 (165)
143 3p1t_A Putative histidinol-pho 27.8 34 0.0012 25.6 2.4 26 35-61 49-74 (337)
144 2bz2_A Negative elongation fac 27.5 44 0.0015 22.5 2.8 40 36-87 48-88 (121)
145 3fkd_A L-threonine-O-3-phospha 27.3 39 0.0013 25.7 2.7 25 37-62 50-74 (350)
146 1t0a_A 2C-methyl-D-erythritol 27.3 53 0.0018 24.7 3.4 33 29-63 102-134 (159)
147 2qfj_A FBP-interacting repress 27.2 1.6E+02 0.0054 20.5 8.2 47 35-87 135-182 (216)
148 3md1_A Nuclear and cytoplasmic 27.1 1E+02 0.0035 18.3 8.5 47 35-87 11-58 (83)
149 1gx1_A 2-C-methyl-D-erythritol 27.0 54 0.0018 24.7 3.4 33 29-63 101-133 (160)
150 1rlm_A Phosphatase; HAD family 26.7 76 0.0026 23.5 4.3 25 37-62 190-214 (271)
151 3r8s_T 50S ribosomal protein L 26.6 1.1E+02 0.0037 20.7 4.6 39 14-57 18-57 (93)
152 2nlw_A Eukaryotic translation 26.6 99 0.0034 19.8 4.4 41 38-86 34-75 (105)
153 3pgv_A Haloacid dehalogenase-l 26.5 77 0.0026 23.6 4.2 32 27-62 201-232 (285)
154 3dao_A Putative phosphatse; st 26.3 79 0.0027 23.6 4.3 25 37-62 210-234 (283)
155 2pmp_A 2-C-methyl-D-erythritol 26.1 56 0.0019 24.6 3.3 32 29-62 103-134 (160)
156 2g4b_A Splicing factor U2AF 65 26.0 1.5E+02 0.0051 19.8 7.2 47 35-87 104-151 (172)
157 2daf_A FLJ35834 protein; hypot 26.0 1.3E+02 0.0044 21.4 5.1 27 35-61 35-61 (118)
158 3mdf_A Peptidyl-prolyl CIS-tra 25.7 1.1E+02 0.0038 18.2 7.2 47 35-87 17-64 (85)
159 2okr_C MAP kinase-activated pr 25.6 2.7 9.3E-05 22.9 -3.0 15 9-23 3-17 (26)
160 1b7f_A Protein (SXL-lethal pro 25.5 1.5E+02 0.0051 19.6 8.0 47 35-87 99-146 (168)
161 2jwn_A Embryonic polyadenylate 25.4 1.4E+02 0.0049 19.3 7.3 48 35-88 46-94 (124)
162 1fxl_A Paraneoplastic encephal 25.3 1.5E+02 0.0051 19.5 8.4 47 35-87 12-59 (167)
163 3re3_A 2-C-methyl-D-erythritol 25.3 58 0.002 24.5 3.3 33 29-63 106-138 (162)
164 2x4k_A 4-oxalocrotonate tautom 25.2 45 0.0015 19.0 2.2 32 28-60 7-43 (63)
165 1x4g_A Nucleolysin TIAR; struc 24.9 1.2E+02 0.0043 19.2 4.6 41 35-87 35-76 (109)
166 3hdo_A Histidinol-phosphate am 24.5 46 0.0016 25.4 2.7 27 35-62 63-89 (360)
167 3lqv_A PRE-mRNA branch site pr 24.3 64 0.0022 20.8 3.1 43 35-86 18-61 (115)
168 1fg7_A Histidinol phosphate am 24.1 45 0.0016 25.7 2.6 25 36-61 57-81 (356)
169 3j21_T 50S ribosomal protein L 24.0 1.6E+02 0.0056 19.5 7.5 62 17-87 17-82 (86)
170 2yh0_A Splicing factor U2AF 65 23.9 1.8E+02 0.0061 19.9 7.1 46 35-86 124-170 (198)
171 2ytc_A PRE-mRNA-splicing facto 23.9 95 0.0033 18.6 3.7 41 35-87 22-63 (85)
172 3beg_B Splicing factor, argini 23.8 57 0.002 21.5 2.8 39 35-86 26-65 (115)
173 3b64_A Macrophage migration in 23.8 1.5E+02 0.005 19.4 4.9 35 25-60 58-97 (112)
174 1s2o_A SPP, sucrose-phosphatas 23.8 93 0.0032 22.8 4.2 33 26-62 153-185 (244)
175 2rbk_A Putative uncharacterize 23.8 67 0.0023 23.5 3.4 31 28-62 180-210 (261)
176 2voo_A Lupus LA protein; RNA-b 23.5 1.1E+02 0.0037 22.3 4.5 47 35-88 119-166 (193)
177 1rkq_A Hypothetical protein YI 22.9 96 0.0033 23.2 4.2 32 27-62 190-221 (282)
178 3f0d_A 2-C-methyl-D-erythritol 22.7 70 0.0024 24.6 3.3 31 34-65 127-157 (183)
179 3bs3_A Putative DNA-binding pr 22.6 34 0.0012 20.2 1.3 25 33-59 46-70 (76)
180 1l6r_A Hypothetical protein TA 22.6 1.1E+02 0.0037 22.4 4.4 32 27-62 145-176 (227)
181 2xcz_A Possible ATLS1-like lig 22.4 1.5E+02 0.0052 19.4 4.8 35 26-61 59-98 (115)
182 2cjk_A Nuclear polyadenylated 22.4 73 0.0025 21.3 3.1 46 35-86 13-59 (167)
183 2ad9_A Polypyrimidine tract-bi 22.2 1.9E+02 0.0066 19.7 5.4 41 35-87 41-82 (119)
184 2kzf_A RBFA, ribosome-binding 22.1 1.8E+02 0.0061 19.6 5.1 44 40-83 13-61 (106)
185 2zjr_Q 50S ribosomal protein L 22.1 74 0.0025 21.6 3.1 40 14-58 14-53 (95)
186 4hcn_B Polyubiquitin, ubiquiti 22.0 1.2E+02 0.0042 19.5 4.1 26 35-60 41-66 (98)
187 3egn_A RNA-binding protein 40; 21.7 1.9E+02 0.0064 19.3 5.7 49 35-86 55-106 (143)
188 2jvo_A Nucleolar protein 3; nu 21.7 1E+02 0.0035 20.0 3.7 39 35-87 41-80 (108)
189 2dnq_A RNA-binding protein 4B; 21.6 1.4E+02 0.0047 18.2 4.2 39 35-87 18-57 (90)
190 2ghp_A U4/U6 snRNA-associated 21.6 2.4E+02 0.0084 20.8 6.3 47 35-87 127-174 (292)
191 4f02_A Polyadenylate-binding p 21.5 2.3E+02 0.0077 20.2 7.1 47 35-87 25-72 (213)
192 3l7y_A Putative uncharacterize 21.3 1.1E+02 0.0037 23.1 4.2 25 37-62 227-251 (304)
193 1why_A Hypothetical protein ri 21.3 1E+02 0.0035 19.1 3.5 41 35-87 27-68 (97)
194 1sjq_A Polypyrimidine tract-bi 21.0 83 0.0028 21.3 3.2 39 35-85 26-65 (105)
195 3td3_A Outer membrane protein 21.0 1.2E+02 0.0043 20.2 4.1 49 19-68 6-58 (123)
196 3mtn_B UBA80, ubcep1, ubiquiti 21.0 1.5E+02 0.005 17.9 4.3 30 23-57 14-43 (85)
197 2do0_A HnRNP M, heterogeneous 21.0 1.7E+02 0.0058 18.5 5.9 46 35-87 25-71 (114)
198 1uh6_A Ubiquitin-like 5; beta- 20.8 1.9E+02 0.0064 19.6 5.0 31 25-60 41-71 (100)
199 1wi8_A EIF-4B, eukaryotic tran 20.7 1.2E+02 0.004 19.1 3.7 55 26-88 17-73 (104)
200 1y7y_A C.AHDI; helix-turn-heli 20.6 35 0.0012 20.0 1.0 24 33-58 49-72 (74)
201 2lea_A Serine/arginine-rich sp 20.6 42 0.0014 23.0 1.6 47 35-87 57-104 (135)
202 3mlf_A Transcriptional regulat 20.1 79 0.0027 20.9 2.9 26 33-60 59-84 (111)
203 3get_A Histidinol-phosphate am 20.0 64 0.0022 24.5 2.7 23 39-62 67-89 (365)
No 1
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=100.00 E-value=1.3e-58 Score=348.00 Aligned_cols=131 Identities=64% Similarity=0.992 Sum_probs=125.7
Q ss_pred CCCCccEEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEeeC
Q 032727 1 MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYD 80 (135)
Q Consensus 1 m~~~~~~~i~~~k~~~N~LL~RkEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYd 80 (135)
|+| +|||+|++|++||||+|+||+|+|+|||.||||+.||+++||+||++ |+|+||||+|+|+||+|+|+|||+|||
T Consensus 1 m~~--~vtirtrk~~~N~LL~Rke~v~dV~HpG~aTpsr~eIrekLAk~y~~-~~d~VvV~g~rT~fG~gkstGfa~IYd 77 (135)
T 3u5c_Y 1 MSD--AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVFGFRTQFGGGKSVGFGLVYN 77 (135)
T ss_dssp -CC--CCCEEEEEEEEEGGGTEEEEEEEEECSSSCCCCHHHHHHHHHTTTTS-CGGGEEEEEEEECTTSSEEEEEEEEES
T ss_pred CCC--cEEEEEEEeeeccCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEeccCCceEEEEEEEeC
Confidence 777 79999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CHHHHHhcCCcchhhhcCCcccccc-chhhHHHHhhhccccccccccccchhhhc
Q 032727 81 SVENAKKFEPKYRLIRNGLDTKVEK-SRKQLKERKNRAKKIRGVKKTKASDAAKK 134 (135)
Q Consensus 81 s~e~~kk~Epk~~l~Rn~~~e~~k~-~Rk~~ke~kn~~kk~rGt~k~~~~~~~k~ 134 (135)
|+|+|++|||+|+|+|||+.|+.++ ||+||||+||++||+|||+|++++++.++
T Consensus 78 s~d~akk~EPkyrL~R~gl~ek~~~~srk~~ke~knr~kk~rGt~k~~~~~~~~~ 132 (135)
T 3u5c_Y 78 SVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARR 132 (135)
T ss_dssp SHHHHHHHSCHHHHHHHTSSCCCCCSCHHHHHHHHHHHHTCCSCSHHHHHHHHHH
T ss_pred CHHHHHhcCchheEeeccccccccCccHHHHHHHHhcchhhcchhhhhccccccc
Confidence 9999999999999999999998885 99999999999999999999999877653
No 2
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=100.00 E-value=4.6e-57 Score=344.06 Aligned_cols=129 Identities=39% Similarity=0.673 Sum_probs=125.4
Q ss_pred cEEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEeeCCHHHH
Q 032727 6 AVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENA 85 (135)
Q Consensus 6 ~~~i~~~k~~~N~LL~RkEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~ 85 (135)
+|||+|++|++||||+|+||+|+|+|||.||||+.||+++||+||++ ++|+||||+|+|+||+|+|+|||+||||+|+|
T Consensus 2 ~vtirtrk~~~N~LL~RkE~v~dV~Hpg~aTpSk~eIrekLAkmy~~-~~d~VvV~g~rT~fGggkStGfa~IYDs~e~a 80 (149)
T 2xzm_P 2 TIVIRTKKILVNPLLSRRQLSLDVLHPDSPTASKEKIREELAKQLKV-DARNVVVYGFSTQYGGGKSTGFALVYDNQQYL 80 (149)
T ss_dssp CCEEEEEEEEEETTTTEEEEEEEEECSSSCSCCHHHHHHHHHHHHTC-CGGGEEEEEECCCSSSSEEEEEEEEESCHHHH
T ss_pred cEEEEecccccccCcCCEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEecCCCceEEEEEEEeCCHHHH
Confidence 79999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HhcCCcchhhhcCCccccccchhhHHHHhhhccccccccccccchhhhcC
Q 032727 86 KKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGVKKTKASDAAKKK 135 (135)
Q Consensus 86 kk~Epk~~l~Rn~~~e~~k~~Rk~~ke~kn~~kk~rGt~k~~~~~~~k~~ 135 (135)
++|||+|+|+|||+.++.+.||+||||+|||+||+|||+|++++.+++++
T Consensus 81 Kk~EPkyrL~Rngl~ek~~~sRkqrKe~knr~kkvrGt~k~~~~~~~k~~ 130 (149)
T 2xzm_P 81 LKYEPNYRLRKVKILGEKPNTRRSFKELKRKIKRTSGKAITKLLSEKKGD 130 (149)
T ss_dssp HHHSCHHHHHHTTSSCCCCCHHHHHHHHHHHHTTSCHHHHHHHHTTSCSC
T ss_pred HhhCchheeeeccccccccCcHHHHHHHHhhhhhhcchhhhhcccccccc
Confidence 99999999999999998888999999999999999999999998777653
No 3
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.9e-59 Score=351.40 Aligned_cols=131 Identities=87% Similarity=1.267 Sum_probs=93.7
Q ss_pred ccEEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEeeCCHHH
Q 032727 5 KAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN 84 (135)
Q Consensus 5 ~~~~i~~~k~~~N~LL~RkEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~ 84 (135)
++|||+|++|++||||+|+||+|+|+|||.||||+.||+++||+||+++|+|+||||+|+|+||+|+|+|||+||||+|+
T Consensus 8 ~~vtirtrk~~~N~LL~Rke~v~dV~HpG~aTpsk~eIrekLAk~y~~~~~d~VvV~g~rT~fGggkstGfa~IYds~d~ 87 (138)
T 3iz6_U 8 PAVTLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHFGGGKSTGFGLIYDNLDA 87 (138)
T ss_dssp SSCCCCCCCCCCBTTTTCCCCCCCCCCCSSCCCCSHHHHHHHHHTCCCCTTCSCCCCCCCCCSSCSCCCCCCCCSSCHHH
T ss_pred ccEEEEEEEeeeccCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeeEecCCCceEEEEEEEeCCHHH
Confidence 47999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred HHhcCCcchhhhcCCccccccchhhHHHHhhhccccccccccccchhhhcC
Q 032727 85 AKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGVKKTKASDAAKKK 135 (135)
Q Consensus 85 ~kk~Epk~~l~Rn~~~e~~k~~Rk~~ke~kn~~kk~rGt~k~~~~~~~k~~ 135 (135)
|++|||+|+|+|||+.|+.++||+||||+||++||+|||+|++++.+++++
T Consensus 88 aKk~EPkyrL~R~gl~ek~~~srk~~ke~knr~kk~rGt~k~~~~~~~~~~ 138 (138)
T 3iz6_U 88 AKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRGVKKTKAGDAGKKK 138 (138)
T ss_dssp HHSSCCCBTTTTTCC------------------------------------
T ss_pred HHhcCchheEeeccccccccccHHHHHHHHhcchhhcchheeeccccccCC
Confidence 999999999999999998888999999999999999999999999888764
No 4
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=100.00 E-value=8.6e-45 Score=263.84 Aligned_cols=97 Identities=29% Similarity=0.565 Sum_probs=91.7
Q ss_pred cEEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEeeCCHHHH
Q 032727 6 AVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENA 85 (135)
Q Consensus 6 ~~~i~~~k~~~N~LL~RkEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~ 85 (135)
...|+|+++++||||+|+||+|+|+|||+|||||.||+++||+||++ ++|+|||++|+|+||+|+|+|||+||||+|+|
T Consensus 8 ~mei~i~k~~~N~LL~Rke~~~~v~Hpg~~tpsk~eirekLA~~~~~-~~d~Vvv~~~~T~fG~gkstG~a~IYds~e~a 86 (107)
T 2v94_A 8 EMEIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDL-NPETTVIQYIRSYFGSYKSKGYAKYYYDKDRM 86 (107)
T ss_dssp CCEEEEEEEEEETTTTEEEEEEEEECTTSCCCCHHHHHHHHHHHHTC-CGGGEEEEEEECCTTCSEEEEEEEEESSHHHH
T ss_pred eeEEEEEEeeecCCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEecCCCceEEEEEEEECCHHHH
Confidence 47899999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HhcCCcchhhhcCCcccc
Q 032727 86 KKFEPKYRLIRNGLDTKV 103 (135)
Q Consensus 86 kk~Epk~~l~Rn~~~e~~ 103 (135)
++|||+|+|+|||+.+++
T Consensus 87 kk~Epky~L~R~g~~e~~ 104 (107)
T 2v94_A 87 LYIEPEYILIRDGIIEKK 104 (107)
T ss_dssp HHHSCHHHHHHTTC----
T ss_pred HhhCchheeeecCccccc
Confidence 999999999999998764
No 5
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=100.00 E-value=2.2e-44 Score=258.10 Aligned_cols=95 Identities=29% Similarity=0.398 Sum_probs=92.5
Q ss_pred EEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEeeCCHHHHHh
Q 032727 8 TLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKK 87 (135)
Q Consensus 8 ~i~~~k~~~N~LL~RkEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~kk 87 (135)
.|+|.++++||||+|+||+|+|+|||+|||||.||+++||+||++ ++|+|||++|+|+||+|+|+|||+||||+|+|++
T Consensus 2 ei~I~~~~~N~LL~Rke~~~~v~hp~~~tpsk~eirekLA~~~~~-~~~~vvv~~~~t~fG~gks~G~a~IYds~e~~kk 80 (98)
T 2g1d_A 2 DLIIKEKRDNPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGV-DKELVIVDNNKQLTGKHEIEGYTKIYADKPSAML 80 (98)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEECCTTSCCCHHHHHHHHHHHHHS-CSTTEECCCCCCCSSSSEEEEEEEEESHHHHHHH
T ss_pred cEEEEEeeecCCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEecCCCceEEEEEEEECCHHHHHh
Confidence 589999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCcchhhhcCCcccc
Q 032727 88 FEPKYRLIRNGLDTKV 103 (135)
Q Consensus 88 ~Epk~~l~Rn~~~e~~ 103 (135)
|||+|+|+||++.+++
T Consensus 81 ~Epky~l~R~~~~~~~ 96 (98)
T 2g1d_A 81 YEPDYELIRNGLKQKE 96 (98)
T ss_dssp HCTTSCSCSSCCCSSC
T ss_pred hCcceeeeecCccccc
Confidence 9999999999998763
No 6
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=100.00 E-value=3.2e-43 Score=253.31 Aligned_cols=93 Identities=24% Similarity=0.409 Sum_probs=91.0
Q ss_pred EEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEeeCCHHHHHh
Q 032727 8 TLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKK 87 (135)
Q Consensus 8 ~i~~~k~~~N~LL~RkEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~kk 87 (135)
.|+|.++++||||+|+||+|+|+| |+|||||.||+++||+||++ ++|+|||++|+|+||+|+|+|||+||||+|+|++
T Consensus 2 ei~I~~~~~N~LL~Rke~~~~v~H-~~~tpsk~eirekLAk~~~~-~~~~Vvv~~~~t~fG~gkstG~a~IYds~e~akk 79 (101)
T 1xn9_A 2 DIKIIKDKKNPLLNRRELDFIVKY-EGSTPSRNDVRNKLAAMLNA-PLELLVIQRIKTEYGMQESKGYAKLYEDADRMKQ 79 (101)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEC-SSSCCCHHHHHHHHHHHTTC-CTTTEEEEEEEECSSSSEEEEEEEECSCHHHHHH
T ss_pred cEEEEEeeecCCcCcEEEEEEEEc-CCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEecCCCceEEEEEEEECCHHHHHh
Confidence 589999999999999999999999 89999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCcchhhhcCCccc
Q 032727 88 FEPKYRLIRNGLDTK 102 (135)
Q Consensus 88 ~Epk~~l~Rn~~~e~ 102 (135)
|||+|+|+||++.++
T Consensus 80 ~Epky~L~R~g~~e~ 94 (101)
T 1xn9_A 80 VEQEYVLKRNAVPGS 94 (101)
T ss_dssp HHTGGGCCCCSCCCC
T ss_pred hCchheeeecCcccc
Confidence 999999999999875
No 7
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=100.00 E-value=7.4e-43 Score=251.83 Aligned_cols=93 Identities=22% Similarity=0.306 Sum_probs=90.5
Q ss_pred EEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEeeCCHHHHHh
Q 032727 8 TLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKK 87 (135)
Q Consensus 8 ~i~~~k~~~N~LL~RkEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~kk 87 (135)
.|.|.++++||||+|+||+|+|+| |+|||||.||+++||+||++ ++|+|||++|+|+||+|+|+|||+||||+|+|++
T Consensus 2 ei~I~~~~~N~LL~Rke~~~~v~H-~~~tpsk~eirekLAk~~~~-~~d~Vvv~~~~T~fG~gkstG~a~IYds~e~akk 79 (102)
T 1ywx_A 2 DISIISDRNNPLLQRREIKFTVSF-DAATPSIKDVKMKLVAVLNA-NKQVLVVDTLDQIFGKLEAEGYAKIYNDEKAMAT 79 (102)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEC-SSCCCCHHHHHHHHHHHHTS-CSTTEEEEEEEECSSSSEEEEEEEECSCHHHHHH
T ss_pred cEEEEEeeecCCcCcEEEEEEEEc-CCCCCCHHHHHHHHHHHHCC-CCCEEEEEccEecCCCceEEEEEEEECCHHHHHh
Confidence 488999999999999999999999 78999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCcchhhhcCCccc
Q 032727 88 FEPKYRLIRNGLDTK 102 (135)
Q Consensus 88 ~Epk~~l~Rn~~~e~ 102 (135)
|||+|+|+|||+.++
T Consensus 80 ~Epky~L~R~gl~e~ 94 (102)
T 1ywx_A 80 IETKSVLEKNKIEEE 94 (102)
T ss_dssp SSCHHHHHHSCSCCC
T ss_pred hCchhheeecCccch
Confidence 999999999999875
No 8
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.61 E-value=9.8 Score=23.84 Aligned_cols=45 Identities=24% Similarity=0.361 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+..||++.++.. ++ .++-++.+ ..|.+.|||.| |++.+.+.+
T Consensus 20 ~~~t~~~l~~~F~~~-~i--~~v~i~~~-----~~g~~~g~afV~f~~~~~a~~ 65 (91)
T 2dgw_A 20 FNVTEKNVMEFLAPL-KP--VAIRIVRN-----AHGNKTGYIFVDFSNEEEVKQ 65 (91)
T ss_dssp SSCCHHHHHHHHTTS-CC--SEEEEEEC-----TTSCEEEEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHhhC-Cc--eEEEEEEC-----CCCCCceEEEEEECCHHHHHH
Confidence 467788999988766 66 34444443 35778899988 677766554
No 9
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=74.27 E-value=14 Score=23.38 Aligned_cols=50 Identities=24% Similarity=0.303 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++ .|+. ...|.|..-...-|.+.+.|||.| |.|.+.|.+
T Consensus 15 ~~~t~~~l~~~F~-~~G~--i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~ 65 (98)
T 2cpf_A 15 FSTTEETLKGVFS-KVGA--IKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQK 65 (98)
T ss_dssp TTCCHHHHHHHHH-TTSC--EEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC--eEEEEEEecCCCCCCcCcccEEEEEECCHHHHHH
Confidence 4577889988885 4554 122222211222256799999988 788777655
No 10
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=68.42 E-value=13 Score=23.33 Aligned_cols=47 Identities=23% Similarity=0.250 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHhHhC--CCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYE--VKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~--~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.+||++.+ ..+| . =.++.++.+ -..|.+.|||.| |.|.+.|.+
T Consensus 11 ~~~t~~~l~~~F-~~~G~~~-v~~v~i~~~----~~~g~~kG~afV~f~~~~~a~~ 60 (90)
T 3p5t_L 11 WWTTDEDLTEAV-HSLGVND-ILEIKFFEN----RANGQSKGFALVGVGSEASSKK 60 (90)
T ss_dssp TTCCHHHHHHHH-HTTTCCC-CCCEEEEEC----TTTCCEEEEEEECC-CHHHHHH
T ss_pred CCCCHHHHHHHH-HHhCCCc-eEEEEEEec----CCCCccCcEEEEEECCHHHHHH
Confidence 456788999888 4566 2 234444432 235678999988 777776653
No 11
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=63.44 E-value=12 Score=25.86 Aligned_cols=47 Identities=9% Similarity=0.064 Sum_probs=28.7
Q ss_pred HHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 39 KAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 39 r~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
.+||++..+ .||. =.++.|+..-.+.-+.+.+.|||.| |.+.+.|.+
T Consensus 39 eedl~eef~-k~G~-V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~ 86 (118)
T 3ue2_A 39 EGEVTEECG-KFGA-VNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHK 86 (118)
T ss_dssp HHHHHHHHT-TTSC-EEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHH
T ss_pred HHHHHHHHh-ccCC-EeEEEEeecCCCcccCCcceEEEEEEECCHHHHHH
Confidence 356666664 5665 3344444444333356788899888 777776643
No 12
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=62.57 E-value=14 Score=23.80 Aligned_cols=47 Identities=17% Similarity=0.328 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHhc
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKKF 88 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk~ 88 (135)
...+.++|++.++.. ++ .++.++ ..-..+.+.|||.| |.+.+.+...
T Consensus 25 ~~~t~~~l~~~F~~~-gi--~~v~i~----~~~~~g~~~g~afV~f~~~~~a~~A 72 (103)
T 2dng_A 25 FNTVQGDIDAIFKDL-SI--RSVRLV----RDKDTDKFKGFCYVEFDEVDSLKEA 72 (103)
T ss_dssp TTCCHHHHHHHTTTS-CE--EEEEEE----ECSSSCSEEEEEEEEESSHHHHHHH
T ss_pred CCCCHHHHHHHHHhC-Cc--eEEEEe----ecCCCCccceEEEEEECCHHHHHHH
Confidence 567788888877544 55 233332 33344678888877 7787777654
No 13
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.39 E-value=27 Score=22.19 Aligned_cols=47 Identities=21% Similarity=0.394 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++..|+. =.++.++.+ . .+.+.|||.| |+|.+.|.+
T Consensus 19 ~~~t~~~l~~~F~~~~G~-v~~v~i~~~----~-~g~~~g~afV~f~~~~~a~~ 66 (104)
T 2dhg_A 19 PDVDDGMLYEFFVKVYPS-CRGGKVVLD----Q-TGVSKGYGFVKFTDELEQKR 66 (104)
T ss_dssp TTCCHHHHHHHHHHHCTT-EEEEEEEEC----T-TCCEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC-eEEEEEEEC----C-CCCccceEEEEECCHHHHHH
Confidence 457889999999775775 223333322 2 5568888877 777776644
No 14
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.27 E-value=17 Score=23.19 Aligned_cols=45 Identities=27% Similarity=0.578 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++ .|+. =.++.++. . .+.+.|||.| |.+.+.|.+
T Consensus 25 ~~~t~~~l~~~F~-~~G~-i~~v~i~~----~--~g~~~g~afV~f~~~~~A~~ 70 (103)
T 2d9p_A 25 DGIDDERLRKAFS-PFGT-ITSAKVMM----E--GGRSKGFGFVCFSSPEEATK 70 (103)
T ss_dssp TTCCHHHHHHTTT-TTSC-EEEEEEEE----C--SSSEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-EEEEEEEc----C--CCCcCEEEEEEECCHHHHHH
Confidence 4567788887774 4554 12333332 2 5778888877 777776654
No 15
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=62.08 E-value=28 Score=22.18 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++ .|+. =.++.++.+ . .+.+.|||.| |.+.+.|.+
T Consensus 25 ~~~t~~~l~~~F~-~~G~-i~~v~i~~~---~--~g~~~g~afV~f~~~~~A~~ 71 (105)
T 2dnh_A 25 KQQSEEDVLRLFQ-PFGV-IDECTVLRG---P--DGSSKGCAFVKFSSHTEAQA 71 (105)
T ss_dssp TTCCHHHHHHHHT-TTSC-EEEEEEEEC---S--SSCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEEEEEC---C--CCCcCcEEEEEeCCHHHHHH
Confidence 4567888888874 4554 123333322 1 3678888887 777776654
No 16
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.38 E-value=27 Score=22.34 Aligned_cols=47 Identities=13% Similarity=0.298 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.+||++.++. |+. =.++. |...-..+.+.|||.| |.+.+.+.+
T Consensus 26 ~~~t~~~l~~~F~~-~G~-v~~v~----i~~~~~~g~~~g~afV~f~~~~~a~~ 73 (105)
T 2dh8_A 26 WSTTQETLRSYFSQ-YGE-VVDCV----IMKDKTTNQSRGFGFVKFKDPNCVGT 73 (105)
T ss_dssp TTCCHHHHHHHHHT-TSC-EEEEE----EEECSSSCCEEEEEEEEESSTTHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEE----EeeCCCCCCcceEEEEEECCHHHHHH
Confidence 46788899988854 553 12222 3333345678889887 777766654
No 17
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=59.95 E-value=34 Score=23.15 Aligned_cols=49 Identities=14% Similarity=0.141 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
.+.+.++|++.+. .||. =.+..++.+-.| |.+.+.|||.| |.+.+.|..
T Consensus 13 ~~~te~~l~~~F~-~~G~-i~~v~i~~~~~~--~~~~~~g~afV~f~~~~~A~~ 62 (175)
T 3nmr_A 13 RTWSEKDLRELFE-QYGA-VYEINVLRDRSQ--NPPQSKGCCFVTFYTRKAALE 62 (175)
T ss_dssp TTCCHHHHHHHHH-TTSC-EEEEEEEEECSS--SSCEEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hCCC-EEEEEEEecCCC--CCCCcceEEEEEECCHHHHHH
Confidence 5678889998884 4554 223333322221 23489999988 777776654
No 18
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=59.83 E-value=11 Score=27.79 Aligned_cols=30 Identities=7% Similarity=-0.018 Sum_probs=20.3
Q ss_pred EEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 58 IFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 58 IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
.|+.+..+....+.+.||+.| |.+.+.|.+
T Consensus 160 ~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~ 190 (222)
T 3dxb_A 160 IIYQEKQGEEEDAEIIVKIFVEFSIASETHK 190 (222)
T ss_dssp EEEEEECCSSTTCCEEEEEEEEESSHHHHHH
T ss_pred EEecCCCCcccCcCceeEEEEEECCHHHHHH
Confidence 444444454455688999999 888877653
No 19
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.44 E-value=18 Score=24.99 Aligned_cols=54 Identities=15% Similarity=0.258 Sum_probs=33.1
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHhCCCC---CCeEEEeceeecCCCCEEEEEEEe-eCCHHHHH
Q 032727 26 VIDVLHPGRANVSKAELKEKLARMYEVKD---PNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAK 86 (135)
Q Consensus 26 ~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~---~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 86 (135)
.+-|..- -...+.+||++-++..-.+ . .++.++.+ . .|.++|||.| |.+.+.+.
T Consensus 25 ~v~V~nL-p~~~te~dl~~~F~~~g~v-~g~v~~v~i~~d-~----~gr~~G~aFV~F~~~~~A~ 82 (123)
T 2dha_A 25 IVRMRGL-PFTATAEEVVAFFGQHCPI-TGGKEGILFVTY-P----DGRPTGDAFVLFACEEYAQ 82 (123)
T ss_dssp EEEECSC-CTTCCHHHHHHHHHTTSCC-TTGGGGEEEEEC-T----TSCEEEEEEECCSSHHHHH
T ss_pred EEEEeCC-CCCCCHHHHHHHHHhhCCc-cCCcceEEEEEC-C----CCCEeeEEEEEECCHHHHH
Confidence 4444443 3567889999999654323 1 35556554 2 3678899988 55655554
No 20
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=58.41 E-value=21 Score=22.78 Aligned_cols=47 Identities=15% Similarity=0.405 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHhHhCCCC-CCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKD-PNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~-~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
.+.+-+||++.++ .||. . .++-++. .-..+.+.|||.| |.|.+.|.+
T Consensus 11 ~~~te~~l~~~F~-~~G~-~v~~v~i~~----d~~t~~~rg~aFV~F~~~~~A~~ 59 (91)
T 2lxi_A 11 QAATEDDIRGQLQ-SHGV-QAREVRLMR----NKSSGQSRGFAFVEFSHLQDATR 59 (91)
T ss_dssp SSCCHHHHHHHHH-HHTC-CCSBCCSSS----CSSSCCCSSEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHH-HhCC-EeEEEEEEe----cCCCCCcCceEEEEecCHHHHHH
Confidence 5677889999985 5663 2 2332322 2345677888877 788777765
No 21
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=58.33 E-value=33 Score=21.85 Aligned_cols=47 Identities=17% Similarity=0.372 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+..+|++.+ ..||. =.++ .|......+.+.|||.| |.+.+.|..
T Consensus 33 ~~~t~~~l~~~f-~~~G~-i~~v----~i~~~~~~~~~~g~afV~f~~~~~a~~ 80 (106)
T 1p27_B 33 EEATEEDIHDKF-AEYGE-IKNI----HLNLDRRTGYLKGYTLVEYETYKEAQA 80 (106)
T ss_dssp TTCCHHHHHHHH-GGGSC-EEEE----EEEECTTTSSEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHH-hccCC-eEEE----EEEecCCCCceeeEEEEEECCHHHHHH
Confidence 467888998888 44554 1222 23344455788899988 788777654
No 22
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=58.20 E-value=35 Score=22.16 Aligned_cols=47 Identities=17% Similarity=0.226 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++ .|+. =.++.++.+- -.+.+.|||.| |.+.+.+.+
T Consensus 35 ~~~t~~~l~~~F~-~~G~-i~~v~i~~~~----~~g~~~g~afV~f~~~~~a~~ 82 (115)
T 2cpz_A 35 QEFGDQDLLQMFM-PFGN-VVSAKVFIDK----QTNLSKCFGFVSYDNPVSAQA 82 (115)
T ss_dssp SSCCHHHHHHHHG-GGSC-CSEEEEEECS----SSCSEEEEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEEEEECC----CCCCcCccEEEEECCHHHHHH
Confidence 4567889998885 5664 2344443332 34678888887 778777654
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=55.34 E-value=40 Score=21.84 Aligned_cols=67 Identities=18% Similarity=0.313 Sum_probs=36.0
Q ss_pred eeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 12 RKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 12 ~k~~~N~LL~RkEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
....+|-..+-.-|. |..- ....+.+||++.++ .||. =.++-++ ..-..|.+.|||.| |.|.+.|.+
T Consensus 9 ~~~~en~~~~gt~lf--V~nL-p~~~te~~L~~~F~-~~G~-I~~v~i~----~d~~tg~~kG~afV~f~~~~~A~~ 76 (99)
T 4fxv_A 9 HHHHENLYFQGTNLI--VNYL-PQNMTQDELRSLFS-SIGE-VESAKLI----RDKVAGHSLGYGFVNYVTAKDAER 76 (99)
T ss_dssp -------CCCCSEEE--EESC-CTTCCHHHHHHHHH-TTSC-EEEEEEE----ECSSSCCEEEEEEEEESSHHHHHH
T ss_pred ccccccccCCCCEEE--EeCC-CCCCCHHHHHHHHH-hcCC-EEEeEee----ecCCCCcccccEEEEECCHHHHHH
Confidence 344556555444333 4443 35678899998885 4554 1222222 23345778899988 888887754
No 24
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.99 E-value=37 Score=21.43 Aligned_cols=47 Identities=21% Similarity=0.305 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+..+|++.++. ||. =.++.++ .....+.+.|||.| |.|.+.|.+
T Consensus 18 ~~~~~~~l~~~f~~-~G~-i~~~~i~----~~~~~g~~~g~afV~f~~~~~a~~ 65 (104)
T 1p1t_A 18 YEATEEQLKDIFSE-VGP-VVSFRLV----YDRETGKPKGYGFCEYQDQETALS 65 (104)
T ss_dssp TTSCHHHHHHHHHT-TSC-CSEEEEE----EETTTTEEEEEEEEECSCHHHHHH
T ss_pred CcCCHHHHHHHHHh-cCC-eeEEEEE----eCCCCCccceEEEEEECCHHHHHH
Confidence 45678899988854 554 2333333 22335788999988 777776654
No 25
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=54.93 E-value=30 Score=23.05 Aligned_cols=44 Identities=16% Similarity=0.085 Sum_probs=26.9
Q ss_pred CHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHH
Q 032727 38 SKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAK 86 (135)
Q Consensus 38 sr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 86 (135)
...||++.. ..||. =.++.++.. .-.++.+.|||.| |.|.+.|.
T Consensus 26 ~~~dl~~~f-~~~G~-V~~v~i~~~---~~~~~~~~G~~FV~f~~~~~A~ 70 (105)
T 2pe8_A 26 LEVETKEEC-EKYGK-VGKCVIFEI---PGAPDDEAVRIFLEFERVESAI 70 (105)
T ss_dssp CHHHHHHHG-GGGSC-EEEEEEEEC---SSCCTTTSEEEEEEESSHHHHH
T ss_pred HHHHHHHHH-HhcCC-EEEEEEecC---CCCCCCCcEEEEEEECCHHHHH
Confidence 467888877 57776 334444332 2223567788877 77877664
No 26
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.16 E-value=20 Score=23.27 Aligned_cols=47 Identities=23% Similarity=0.346 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++..=.+ .++++...+. .+.+.|||.| |+|.+.|..
T Consensus 35 ~~~t~~~l~~~f~~~G~v--~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~ 82 (115)
T 2cpx_A 35 PRVTERDLVSLFARFQEK--KGPPIQFRMM----TGRMRGQAFITFPNKEIAWQ 82 (115)
T ss_dssp TTCCHHHHHHHTHHHHHS--SSSCCEEEEE----CSSSCSEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCc--cceEEEEEcC----CCccceEEEEEECCHHHHHH
Confidence 567889999888654444 3333333333 4566677776 677766654
No 27
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=52.94 E-value=23 Score=21.07 Aligned_cols=48 Identities=17% Similarity=0.369 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHhc
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKKF 88 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk~ 88 (135)
...+.++|++-++. +|. =.+.. +...-..+.+.|||.| |+|.+.+...
T Consensus 9 ~~~t~~~l~~~F~~-~G~-i~~v~----i~~~~~~~~~~g~afV~f~~~~~a~~a 57 (75)
T 2mss_A 9 VNTTVEDVKHYFEQ-FGK-VDDAM----LMFDKTTNRHRGFGFVTFESEDIVEKV 57 (75)
T ss_dssp SSCCHHHHHHHHHT-TSC-CSEEC----CCBCSSSTTSCBEEEEECSCHHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-EEEEE----EEecCCCCCcCcEEEEEECCHHHHHHH
Confidence 45678899988855 554 12222 2233335678889887 7888877664
No 28
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=52.47 E-value=39 Score=20.94 Aligned_cols=47 Identities=23% Similarity=0.315 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.+||++.++ .|+. -.+..++.. -..+.+.|||.| |.+.+.|.+
T Consensus 25 ~~~t~~~l~~~F~-~~G~-i~~~~~~~~----~~~g~~~g~afV~f~~~~~a~~ 72 (95)
T 2ek1_A 25 FTVSIDEILDFFY-GYQV-IPGSVCLKY----NEKGMPTGEAMVAFESRDEATA 72 (95)
T ss_dssp TTCCHHHHHHHTT-TSCB-CTTCCEEEE----CTTSCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-ccceEEEEe----CCCCCEeeEEEEEECCHHHHHH
Confidence 4577889988874 4554 233333332 245678889888 777776654
No 29
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=52.17 E-value=44 Score=21.43 Aligned_cols=47 Identities=23% Similarity=0.367 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+..+|++.+ ..||. |.-..+......+.+.|||.| |.|.+.+..
T Consensus 36 ~~~t~~~l~~~F-~~~G~-----i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 83 (110)
T 1oo0_B 36 EEAQEDEIQEKF-CDYGE-----IKNIHLNLDRRTGFSKGYALVEYETHKQALA 83 (110)
T ss_dssp TTCCHHHHHHHH-GGGSC-----EEEEECCBCTTTSSBCSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHH-HhcCC-----EEEEEEEecCCCCCcceEEEEEECCHHHHHH
Confidence 456788998887 44554 222223333345677788877 777777654
No 30
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=51.17 E-value=16 Score=24.29 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=20.9
Q ss_pred hHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 48 RMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 48 ~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
..||. =.++.++.+ .+ +.+.|||.| |.+.+.|.+
T Consensus 49 ~~~G~-V~~v~i~~~----~~-~~~~G~~fV~f~~~~~A~~ 83 (104)
T 1jmt_A 49 EKYGE-VEEMNVCDN----LG-DHLVGNVYVKFRREEDAEK 83 (104)
T ss_dssp HHTCC-EEEEEECCS----SS-SSSEEEEEEEESCHHHHHH
T ss_pred ccCCc-eEEEEEEeC----CC-CCccEEEEEEECCHHHHHH
Confidence 56676 334433332 12 478899988 888887754
No 31
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=50.92 E-value=53 Score=21.98 Aligned_cols=47 Identities=21% Similarity=0.407 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.+||++.++. ||. =.++ .|...-..+.+.|||.| |+|.+.|.+
T Consensus 52 ~~~~~~~l~~~F~~-~G~-i~~v----~i~~~~~~~~~~g~afV~f~~~~~a~~ 99 (139)
T 1u6f_A 52 TTVDEVQLRQLFER-YGP-IESV----KIVCDRETRQSRGYGFVKFQSGSSAQQ 99 (139)
T ss_dssp TTCCHHHHHHHHHH-HSC-EEEE----EEEEETTTTEEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEE----EEEEcCCCCCcceEEEEEECCHHHHHH
Confidence 45678899988855 554 1222 23333346789999987 788877654
No 32
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=50.71 E-value=44 Score=20.95 Aligned_cols=47 Identities=13% Similarity=0.281 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+..||++.++ .||. |.-..+......+.+.|||.| |+|.+.|..
T Consensus 12 ~~~t~~~l~~~F~-~~G~-----i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~ 59 (96)
T 2x1f_A 12 YDQTEEQILDLCS-NVGP-----VINLKMMFDPQTGRSKGYAFIEFRDLESSAS 59 (96)
T ss_dssp TTCCHHHHHHHHH-TTSC-----EEEEECCBCTTTCCBCSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-----EEEEEEEeCCCCCccceEEEEEECCHHHHHH
Confidence 4567888888885 4453 111223333345677888877 778777654
No 33
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.42 E-value=29 Score=22.86 Aligned_cols=46 Identities=24% Similarity=0.209 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+..+|++-++ .||. =.++.++. ... +.+.|||.| |++.+.+.+
T Consensus 21 ~~~te~~L~~~F~-~~G~-v~~v~i~~----d~~-g~~rG~aFV~F~~~e~a~~ 67 (103)
T 1s79_A 21 TDATLDDIKEWLE-DKGQ-VLNIQMRR----TLH-KAFKGSIFVVFDSIESAKK 67 (103)
T ss_dssp TTCCHHHHHHHHH-TSSC-EEEEEEEC----CCT-TSCCCEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHh-hcCC-EEEEEEEE----CCC-CCCccEEEEEECCHHHHHH
Confidence 4577889988885 4564 12333332 223 677888876 888877765
No 34
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=49.38 E-value=36 Score=22.59 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++ .||. =.++.++.+- .+.+.|||.| |+|.+.|.+
T Consensus 17 ~~~t~~~l~~~F~-~~G~-i~~v~i~~~~-----~g~~~g~afV~F~~~~~A~~ 63 (116)
T 2fy1_A 17 RETNEKMLKAVFG-KHGP-ISEVLLIKDR-----TSKSRGFAFITFENPADAKN 63 (116)
T ss_dssp TTCCHHHHHHHHH-TSSC-CSEEEEECST-----TTTCCCEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-EEEEEEEECC-----CCCcccEEEEEECCHHHHHH
Confidence 4577889988885 4554 2344443332 4567788877 777776654
No 35
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=49.24 E-value=7.7 Score=24.87 Aligned_cols=53 Identities=28% Similarity=0.496 Sum_probs=31.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 27 IDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 27 ~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
+-|-.. ....+..+|++.++..-.+ . + .++..-.| +.+.|||.| |.|.+.|.+
T Consensus 20 l~V~nL-p~~~t~~~l~~~F~~~G~v-~-~-~~~~~~~~----g~~~g~afV~f~~~~~a~~ 73 (101)
T 1fj7_A 20 LFIGNL-NPNKSVAELKVAISELFAK-N-D-LAVVDVRT----GTNRKFGYVDFESAEDLEK 73 (101)
T ss_dssp EEEECC-CTTSCHHHHHHHHHHHHHH-H-T-CCCCEEEE----ETTTTEEEEEESSHHHHHH
T ss_pred EEEeCC-CCCCCHHHHHHHHHHhCCc-c-e-EEEecCCC----CCcCcEEEEEECCHHHHHH
Confidence 334443 3567889999999776556 3 3 44444444 345566666 667665544
No 36
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=48.70 E-value=20 Score=21.36 Aligned_cols=46 Identities=13% Similarity=0.239 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHH
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAK 86 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 86 (135)
...+.+||++.++ .+|. =.+..++.+- ..+.+.|||.| |.|.+.+.
T Consensus 10 ~~~t~~~l~~~F~-~~G~-v~~v~i~~~~----~~~~~~g~afV~f~~~~~a~ 56 (77)
T 1uaw_A 10 WQTTQEGLREYFG-QFGE-VKECLVMRDP----LTKRSRGFGFVTFMDQAGVD 56 (77)
T ss_dssp SSCCSHHHHHHHT-TTSC-CCCEEEECCC----CSSSCSSEEEECCCCTTHHH
T ss_pred CCCCHHHHHHHHH-hcCC-EEEEEEecCC----CCCCcCceEEEEEcCHHHHH
Confidence 4567788988884 4554 2444444332 34567788877 56666554
No 37
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.66 E-value=34 Score=21.64 Aligned_cols=47 Identities=19% Similarity=0.473 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++. |+. =.++.++.+- ..+.+.|||.| |.+.+.|..
T Consensus 22 ~~~t~~~l~~~f~~-~G~-i~~v~i~~~~----~~~~~~g~afV~f~~~~~A~~ 69 (102)
T 1x5s_A 22 FDTNEQSLEQVFSK-YGQ-ISEVVVVKDR----ETQRSRGFGFVTFENIDDAKD 69 (102)
T ss_dssp TTCCHHHHHHHHHH-HSC-CCEEEECCCS----SSCSCCSEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEEEEeCC----CCCCcccEEEEEECCHHHHHH
Confidence 45788899998855 554 2333333322 23556777776 777776654
No 38
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=48.11 E-value=57 Score=21.56 Aligned_cols=47 Identities=26% Similarity=0.323 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.+ ..||. =.++.++. .-..+.+.|||.| |++.+.|.+
T Consensus 16 ~~~te~~L~~~F-~~~G~-i~~v~i~~----d~~tg~~rG~aFV~f~~~~~A~~ 63 (110)
T 3s8s_A 16 DNVRETFLKDMC-RKYGE-VEEVEILL----HPRTRKHLGLARVLFTSTRGAKE 63 (110)
T ss_dssp TTCCHHHHHHHH-TTTSC-EEEEEEEE----CTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHH-HhcCC-eeEEEEEE----CCCCCceeeEEEEEECCHHHHHH
Confidence 457888888877 45564 23333333 3344688999887 788777654
No 39
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=47.97 E-value=48 Score=20.68 Aligned_cols=47 Identities=23% Similarity=0.315 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.+||++.++ .|+. -.+..++.. -..+.+.|||.| |.+.+.|.+
T Consensus 25 ~~~t~~~l~~~F~-~~G~-v~~~~~~~~----~~~g~~~g~afV~f~~~~~a~~ 72 (98)
T 2cqp_A 25 FTVSIDEILDFFY-GYQV-IPGSVCLKY----NEKGMPTGEAMVAFESRDEATA 72 (98)
T ss_dssp TTCCHHHHHHHTT-TSCC-CTTTCEEEE----CSSSCEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHH-HcCC-ccceEEEEE----CCCCCeeeEEEEEECCHHHHHH
Confidence 5667889988874 4554 234444332 245678888877 778776654
No 40
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.74 E-value=51 Score=20.85 Aligned_cols=47 Identities=21% Similarity=0.386 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+..+|++.++ .|+. =.++.+ ...-..+.+.|||.| |.|.+.+.+
T Consensus 25 ~~~t~~~l~~~F~-~~G~-i~~v~i----~~~~~~g~~~g~afV~f~~~~~a~~ 72 (103)
T 2cqg_A 25 WKTTEQDLKEYFS-TFGE-VLMVQV----KKDLKTGHSKGFGFVRFTEYETQVK 72 (103)
T ss_dssp SSCCHHHHHHHHG-GGSC-EEEEEE----EECSSSCSEEEEEEEEESSHHHHHH
T ss_pred CcCCHHHHHHHHH-hcCC-eEEEEE----EecCCCCCccceEEEEECCHHHHHH
Confidence 4567889888884 4554 123322 233334778888887 777776654
No 41
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.30 E-value=30 Score=22.61 Aligned_cols=44 Identities=11% Similarity=0.142 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHH
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAK 86 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 86 (135)
...+.+||++-++ .+++ - ++.++.+ . .+.+.|||.| |.+.+.|.
T Consensus 25 ~~~te~~l~~~F~-~~G~-~-~v~i~~d---~--~g~~~G~afV~F~~~~~a~ 69 (102)
T 1wez_A 25 YRATENDIYNFFS-PLNP-M-RVHIEIG---P--DGRVTGEADVEFATHEDAV 69 (102)
T ss_dssp TTCCHHHHHHSSC-SCCC-S-EEEEEES---S--SSCEEEEEEEECSSSHHHH
T ss_pred CCCCHHHHHHHHH-HcCc-e-EEEEEEC---C--CCCEeeEEEEEECCHHHHH
Confidence 4567888888774 4665 3 5544444 2 4788889887 55555443
No 42
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=46.68 E-value=52 Score=20.71 Aligned_cols=42 Identities=17% Similarity=0.366 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++. ||. =.++.++.+ +.|||.| |.|.+.|..
T Consensus 10 ~~~t~~~l~~~F~~-~G~-i~~v~i~~~---------~~g~afV~f~~~~~a~~ 52 (101)
T 2hvz_A 10 TGAGKGELERAFSY-YGP-LRTVWIARN---------PPGFAFVEFEDPRDAED 52 (101)
T ss_dssp SSCSHHHHHHHHHH-HCC-CSEEEEESS---------SSSEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEEEeeC---------CCCEEEEEECCHHHHHH
Confidence 45678899988854 554 245555544 5567766 666666544
No 43
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.42 E-value=53 Score=20.74 Aligned_cols=47 Identities=21% Similarity=0.388 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++ .|+. |.-..|...-..+.+.|||.| |.|.+.|.+
T Consensus 25 ~~~t~~~l~~~f~-~~G~-----i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 72 (103)
T 2cq0_A 25 EDTRETDLQELFR-PFGS-----ISRIYLAKDKTTGQSKGFAFISFHRREDAAR 72 (103)
T ss_dssp TTCCHHHHHTTST-TTCC-----EEEEEEEECSSSCSEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hCCC-----eEEEEEeecCCCCceeeEEEEEECCHHHHHH
Confidence 4577788877663 3443 222223333345678888887 777776654
No 44
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=46.06 E-value=52 Score=20.83 Aligned_cols=47 Identities=23% Similarity=0.475 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeec-CCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTH-FGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~-fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++. |+. +.-| .|... -..+.+.|||.| |.+.+.|.+
T Consensus 25 ~~~t~~~l~~~F~~-~G~----i~~v-~i~~~~~~~~~~~g~afV~f~~~~~a~~ 73 (107)
T 2cph_A 25 FQANQREIRELFST-FGE----LKTV-RLPKKMTGTGAHRGFGFVDFITKQDAKK 73 (107)
T ss_dssp TTCCHHHHHHHHHT-TSC----EEEE-ECCCCCSSSCSSCSEEEEEESSHHHHHH
T ss_pred CcCCHHHHHHHHHc-cCC----eEEE-EEecCCCCCCCcCceEEEEECCHHHHHH
Confidence 45778899888854 553 1111 12222 235666777776 777776654
No 45
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.82 E-value=52 Score=20.39 Aligned_cols=41 Identities=12% Similarity=0.302 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.+||++.++. |+. -...+++ .+.|||.| |+|.+.|.+
T Consensus 18 ~~~t~~~l~~~F~~-~G~-vv~~~~~----------~~~g~afV~f~~~~~A~~ 59 (93)
T 2cqh_A 18 PAVTADDLRQLFGD-RKL-PLAGQVL----------LKSGYAFVDYPDQNWAIR 59 (93)
T ss_dssp TTCCHHHHHHHHHH-TTC-CCSSCEE----------EETTEEEECCSCHHHHHH
T ss_pred CCCCHHHHHHHHHH-cCC-ceEEEEE----------cCCCEEEEEECCHHHHHH
Confidence 45678899988855 453 2233333 25678877 777776644
No 46
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.78 E-value=59 Score=21.06 Aligned_cols=47 Identities=21% Similarity=0.366 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.+||++.++ .|+. =.++.++ ..--.+.+.|||.| |.+.+.|.+
T Consensus 27 ~~~t~~~l~~~F~-~~G~-i~~v~i~----~~~~~~~~~g~afV~f~~~~~a~~ 74 (116)
T 2cqd_A 27 YHTTDASLRKYFE-GFGD-IEEAVVI----TDRQTGKSRGYGFVTMADRAAAER 74 (116)
T ss_dssp SSCCHHHHHHHHH-TTSC-EEEEEES----CCSSSCCCCSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hCCC-eeEEEEE----EcCCCCccceEEEEEECCHHHHHH
Confidence 4578889998885 4554 1222222 22223567778777 777777654
No 47
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=45.78 E-value=50 Score=20.27 Aligned_cols=45 Identities=27% Similarity=0.321 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+..||++.++. |+. =.++.++ . ..+.+.|||.| |.|.+.|.+
T Consensus 18 ~~~t~~~l~~~f~~-~G~-v~~~~i~----~--~~g~~~g~afV~f~~~~~a~~ 63 (92)
T 2dgv_A 18 FDFTWKMLKDKFNE-CGH-VLYADIK----M--ENGKSKGCGVVKFESPEVAER 63 (92)
T ss_dssp TTCCHHHHHHHHHT-TSC-EEEEEEE----E--SSSCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-EEEEEEE----c--cCCCcceEEEEEECCHHHHHH
Confidence 45678899888855 554 1222222 2 35678888877 777776654
No 48
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.35 E-value=40 Score=22.41 Aligned_cols=45 Identities=13% Similarity=0.286 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHH
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENA 85 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~ 85 (135)
...+..||++.++ .|+. -.+.+++..-. .+.+.|||.| |.+.+.|
T Consensus 35 ~~~te~~l~~~F~-~~G~-v~~~~~~~~~~----~g~~~G~afV~F~~~~~a 80 (124)
T 1wel_A 35 FEAENKHVIDFFK-KLDI-VEDSIYIAYGP----NGKATGEGFVEFRNEADY 80 (124)
T ss_dssp TTCCHHHHHHHSC-SSCB-CTTTCEEEECT----TSSEEEEEEEEBSSSHHH
T ss_pred CCCCHHHHHHHHH-hcCC-ccceEEEEECC----CCCCCeEEEEEECCHHHH
Confidence 5677889988874 4554 34433332222 4677888887 4554443
No 49
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.13 E-value=58 Score=20.74 Aligned_cols=49 Identities=20% Similarity=0.345 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++.. +. ....|.+. ...-+.+.+.|||.| |.|.+.|..
T Consensus 18 ~~~t~~~l~~~f~~~-G~-~v~~v~i~--~~~~~~g~~~g~afV~f~~~~~A~~ 67 (109)
T 2dis_A 18 KMKKREEILEEIAKV-TE-GVLDVIVY--ASAADKMKNRGFAFVEYESHRAAAM 67 (109)
T ss_dssp TTSCHHHHHHHHHHH-ST-TEEEEECC--SSSCTTTTTCCEEEEEESSHHHHHH
T ss_pred CcCCHHHHHHHHHHh-cC-CceEEEEE--ccCCCCCCcCcEEEEEecCHHHHHH
Confidence 457788999888654 32 11222221 133345567777776 666665543
No 50
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.22 E-value=58 Score=20.58 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++. |+. +.-| .|......+.+.|||.| |++.+.|.+
T Consensus 25 ~~~t~~~l~~~F~~-~G~----i~~v-~i~~~~~~~~~~g~afV~f~~~~~a~~ 72 (105)
T 1x5u_A 25 EKVSEPLLWELFLQ-AGP----VVNT-HMPKDRVTGQHQGYGFVEFLSEEDADY 72 (105)
T ss_dssp TTCCHHHHHHHHHT-TSC----EEEE-ECCBCSSSCSBCSCEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC----eEEE-EEEecCCCCcCCcEEEEEECCHHHHHH
Confidence 45778898888854 443 1111 22233334567777766 677766654
No 51
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=43.80 E-value=77 Score=21.83 Aligned_cols=47 Identities=21% Similarity=0.408 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++ .||. =.++.+ ...-..+.+.|||.| |+|.+.|.+
T Consensus 114 ~~~t~~~l~~~F~-~~G~-i~~v~i----~~~~~~g~~~g~afV~F~~~~~A~~ 161 (196)
T 1l3k_A 114 EDTEEHHLRDYFE-QYGK-IEVIEI----MTDRGSGKKRGFAFVTFDDHDSVDK 161 (196)
T ss_dssp TTCCHHHHHHHHT-TTSC-EEEEEE----EECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHh-cCCC-eEEEEE----eecCCCCCccceEEEEECCHHHHHH
Confidence 4567788888774 5554 122222 233345778888888 777776653
No 52
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.65 E-value=58 Score=20.39 Aligned_cols=48 Identities=19% Similarity=0.461 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHhc
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKKF 88 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk~ 88 (135)
...+.+||++.++. |+. =.++.++ ..-..+.+.|||.| |+|.+.+.+.
T Consensus 20 ~~~t~~~l~~~F~~-~G~-i~~v~i~----~~~~~~~~~g~afV~f~~~~~a~~A 68 (99)
T 2dgs_A 20 HNCGETELREYFKK-FGV-VTEVVMI----YDAEKQRPRGFGFITFEDEQSVDQA 68 (99)
T ss_dssp SSCCHHHHHHHHSS-SSC-EEEEEEC----CCTTTCSCCSEEEEEESSHHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEEEE----eCCCCCCCCceEEEEECCHHHHHHH
Confidence 45778888888744 553 1222222 22234566777776 7777766543
No 53
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.41 E-value=36 Score=22.17 Aligned_cols=47 Identities=13% Similarity=0.323 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.+ ..|+. =.++.++.+ ...+.+.|||.| |.+.+.+..
T Consensus 37 ~~~te~~l~~~F-~~~G~-i~~v~i~~~----~~~g~~~g~afV~f~~~~~a~~ 84 (116)
T 1x4b_A 37 FETTEESLRNYY-EQWGK-LTDCVVMRD----PASKRSRGFGFVTFSSMAEVDA 84 (116)
T ss_dssp TCCCHHHHHHHH-TSSCC-CSEEEEECC----TTTSSCCSEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHH-HhcCC-EEEEEEEEC----CCCCCcCceEEEEeCCHHHHHH
Confidence 467788998888 45664 234444433 233556777776 677766644
No 54
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.06 E-value=61 Score=20.45 Aligned_cols=45 Identities=18% Similarity=0.465 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++ .|+. =.++.++.+ -+. +.|||.| |.+.+.|.+
T Consensus 25 ~~~t~~~l~~~f~-~~G~-v~~v~i~~~----~~~--~~g~afV~f~~~~~a~~ 70 (103)
T 2cq3_A 25 FRFRDPDLRQMFG-QFGK-ILDVEIIFN----ERG--SKGFGFVTFENSADADR 70 (103)
T ss_dssp TTCCHHHHHHHGG-GTSC-EEEEEEECC----TTT--TCCEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEEEEec----CCC--CcEEEEEEECCHHHHHH
Confidence 4678889988884 4554 123333322 222 6677776 777776654
No 55
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.01 E-value=57 Score=20.12 Aligned_cols=47 Identities=21% Similarity=0.451 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++ .|+. =.++.++ ..-..+.+.|||.| |.|.+.|.+
T Consensus 15 ~~~t~~~l~~~f~-~~G~-v~~v~i~----~~~~~~~~~g~afV~f~~~~~a~~ 62 (95)
T 2dnz_A 15 FNITEDMLRGIFE-PFGK-IDNIVLM----KDSDTGRSKGYGFITFSDSECARR 62 (95)
T ss_dssp TTCCHHHHHHHHT-TTSC-EEEEEEE----CCSSSCCCCSEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-EeEEEEe----ecCCCCceeeEEEEEECCHHHHHH
Confidence 4567888888884 4554 1233332 22234567777776 777777654
No 56
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=42.92 E-value=38 Score=21.56 Aligned_cols=47 Identities=19% Similarity=0.196 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
.+.+.++|++.++. |+. =.++.++.+- ..+.+.|||.| |.+.+.|.+
T Consensus 23 ~~~t~~~l~~~F~~-~G~-i~~v~i~~~~----~~g~~~g~afV~f~~~~~A~~ 70 (106)
T 2dgp_A 23 RNLDEKDLKPLFEE-FGK-IYELTVLKDR----FTGMHKGCAFLTYCERESALK 70 (106)
T ss_dssp TTCCHHHHHHHHHH-HSC-CCEEECCCCS----SSCSCCSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eeEEEEEecC----CCCCcceEEEEEECCHHHHHH
Confidence 56788899998855 553 1333332222 23456677766 566655543
No 57
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=42.72 E-value=47 Score=22.62 Aligned_cols=47 Identities=21% Similarity=0.434 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.+||++.++ .||. =.++.++ .....+.+.|||.| |++.+.|.+
T Consensus 56 ~~~te~~L~~~F~-~~G~-I~~v~i~----~d~~tg~~~G~afV~F~~~~~A~~ 103 (129)
T 2kxn_B 56 LYTTERDLREVFS-KYGP-IADVSIV----YDQQSRRSRGFAFVYFENVDDAKE 103 (129)
T ss_dssp TSCCHHHHHHHHT-TTSC-EEEEEEE----CCSSSSCCCCEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEEEE----ecCCCCccceEEEEEECCHHHHHH
Confidence 4567888888874 4554 1233232 22234567778776 778777654
No 58
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=42.62 E-value=91 Score=23.16 Aligned_cols=48 Identities=21% Similarity=0.312 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.|...|.. --.++-|.=++ .+.+.|||.| |.+.+.+..
T Consensus 19 ~~~~~~~l~~~L~~~F~~-~G~i~~v~~~~----~~~~~g~afV~f~~~~~a~~ 67 (282)
T 3pgw_A 19 EKIKKDELKKSLYAIFSQ-FGQILDILVSR----SLKMRGQAFVIFKEVSSATN 67 (282)
T ss_pred CCCCHHHHHHHHHHHHhc-cCCeEEEEEcC----CCCcceEEEEEECCHHHHHH
Confidence 457788988766666654 22333232222 3456667666 666665543
No 59
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.48 E-value=58 Score=20.03 Aligned_cols=47 Identities=19% Similarity=0.425 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++. |+. =.++.+ ...-..+.+.|||.| |.+.+.+.+
T Consensus 25 ~~~t~~~l~~~f~~-~G~-v~~v~i----~~~~~~~~~~g~afV~f~~~~~A~~ 72 (95)
T 2cqc_A 25 LYTTERDLREVFSK-YGP-IADVSI----VYDQQSRRSRGFAFVYFENVDDAKE 72 (95)
T ss_dssp SSCCHHHHHHHHHT-TSC-EEEEEE----EECSSSSSEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eeEEEE----EEcCCCCCcccEEEEEECCHHHHHH
Confidence 45788899888854 554 123333 233344678888887 788777754
No 60
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=42.42 E-value=72 Score=21.07 Aligned_cols=47 Identities=15% Similarity=0.309 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++ .||. =.++ .+......+.+.|||.| |+|.+.|.+
T Consensus 73 ~~~~~~~l~~~f~-~~G~-i~~v----~i~~~~~~~~~~g~afV~f~~~~~a~~ 120 (140)
T 2ku7_A 73 EEVDDKVLHAAFI-PFGD-ITDI----QIPLDYETEKHRGFAFVEFELAEDAAA 120 (140)
T ss_dssp TTCCHHHHHHHHG-GGSC-EEEE----ECCCCTTTCCCCSEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-EEEE----EEeecCCCCCcCcEEEEEECCHHHHHH
Confidence 4567889988884 4554 1122 12222234567788877 777777654
No 61
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=42.07 E-value=57 Score=20.74 Aligned_cols=26 Identities=12% Similarity=0.202 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHhHhCCCCCCeEEEe
Q 032727 36 NVSKAELKEKLARMYEVKDPNAIFVF 61 (135)
Q Consensus 36 Tpsr~eIk~kLA~~~~~~~~~~IvV~ 61 (135)
+.+-.+++++|++..+++..++-+++
T Consensus 31 ~~TV~~LK~~i~~~~gip~~~qrL~~ 56 (92)
T 1wxv_A 31 EPVVQDLAQVVEEVIGVPQSFQKLIF 56 (92)
T ss_dssp SCBHHHHHHHHHHHTCCCTTTCEEEE
T ss_pred cCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 46779999999999999444444443
No 62
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=42.02 E-value=20 Score=22.46 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+..||++.|...+.. -..+.-|.=.+| +.+.|||.| |.|.+.|..
T Consensus 18 ~~~~~~~l~~~l~~~f~~-~G~i~~v~i~~~----~~~~g~afV~f~~~~~A~~ 66 (97)
T 1nu4_A 18 EKIKKDELKKSLHAIFSR-FGQILDILVSRS----LKMRGQAFVIFKEVSSATN 66 (97)
T ss_dssp TTSCHHHHHHHHHHHHGG-GSCEEEEECCHH----HHHTTCEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh-CCCEEEEEEEcC----CCcCcEEEEEeCCHHHHHH
Confidence 456788898544444433 222222222222 445567766 777776644
No 63
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=41.42 E-value=91 Score=21.98 Aligned_cols=49 Identities=20% Similarity=0.289 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.+||++.+ ..||. .+++-| .|...--.|.+.|||.| |.|.+.|.+
T Consensus 65 ~~~te~~L~~~F-~~~G~--i~v~~v-~i~~d~~tg~skGfaFV~f~~~~~A~~ 114 (156)
T 3n9u_C 65 WWTTDQQLIQVI-RSIGV--YDVVEL-KFAENRANGQSKGYAEVVVASENSVHK 114 (156)
T ss_dssp TTCCHHHHHHHH-HHTTC--CCEEEE-EEEECTTTCCEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHH-HHHCC--ccEEEE-EEEecCCCCccceEEEEEECCHHHHHH
Confidence 567788999888 55662 011111 22222335678999988 888876654
No 64
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=41.28 E-value=47 Score=21.69 Aligned_cols=47 Identities=15% Similarity=0.277 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++ .||. =.++.++ ..-..|.+.|||.| |.|.+.+.+
T Consensus 35 ~~~te~~L~~~F~-~~G~-i~~v~i~----~~~~tg~~kg~afV~f~~~~~A~~ 82 (109)
T 2rs2_A 35 WQTTQEGLREYFG-QFGE-VKECLVM----RDPLTKRSRGFGFVTFMDQAGVDK 82 (109)
T ss_dssp TTCCHHHHHHHHT-TTSC-EEEEEEC----CCTTTCCCTTCEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-ccCC-eEEEEEE----ECCCCCCcCcEEEEEECCHHHHHH
Confidence 4677888888774 4554 1222222 22234667778877 777776654
No 65
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=41.21 E-value=65 Score=21.12 Aligned_cols=47 Identities=19% Similarity=0.393 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
.+.+.++|++.++ .|+. =.++ .|......+.+.|||.| |.|.+.|..
T Consensus 32 ~~~t~~~l~~~F~-~~G~-i~~v----~i~~~~~~~~~~g~afV~f~~~~~a~~ 79 (126)
T 3ex7_B 32 EEATEEDIHDKFA-EYGE-IKNI----HLNLDRRTGYLKGYTLVEYETYKEAQA 79 (126)
T ss_dssp TTCCHHHHHHHHH-TTSC-EEEE----ECCBCTTTSSBCSCEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEE----EEEecCCCCccceEEEEEECCHHHHHH
Confidence 4577889998885 4554 1122 22222235566777766 777776643
No 66
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A
Probab=40.90 E-value=34 Score=25.02 Aligned_cols=33 Identities=30% Similarity=0.395 Sum_probs=24.9
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEec
Q 032727 26 VIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFK 62 (135)
Q Consensus 26 ~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~ 62 (135)
.++|.++| .|+...-..|++.||+ +++.++++|
T Consensus 174 ~~ei~~~~---~~K~~~l~~l~~~lgi-~~~~~ia~G 206 (258)
T 2pq0_A 174 STDVLPAG---GSKAEGIRMMIEKLGI-DKKDVYAFG 206 (258)
T ss_dssp EEEEEESS---CCHHHHHHHHHHHHTC-CGGGEEEEC
T ss_pred eEEEEECC---CChHHHHHHHHHHhCC-CHHHEEEEC
Confidence 35566654 6899999999999999 776666654
No 67
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=40.73 E-value=16 Score=22.74 Aligned_cols=49 Identities=14% Similarity=0.303 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHhcC
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKKFE 89 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk~E 89 (135)
...+.++|++-++. +|. =.++.++.+- ..+.+.|||.| |+|.++.+.++
T Consensus 11 ~~~t~~~l~~~F~~-~G~-i~~v~i~~~~----~~~~~~g~afV~f~~~~a~~a~~ 60 (90)
T 2ki2_A 11 YSATSEQVKELFSQ-FGK-VFNVKLIYDR----ETKKPKGFGFVEMQEESVSEAIA 60 (90)
T ss_dssp TTSSHHHHTTTHHH-HTC-CSEEEECCCS----SSCCCCEEEEEEECTTHHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-EEEEEEEEcC----CCCCcceEEEEEECCHHHHHHHH
Confidence 45778899988865 554 2343333322 23566777776 77777444443
No 68
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=40.71 E-value=65 Score=20.09 Aligned_cols=47 Identities=19% Similarity=0.255 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++ .|+. =.++ .|......+.+.|||.| |.|.+.|.+
T Consensus 18 ~~~t~~~l~~~F~-~~G~-i~~v----~i~~~~~~~~~~g~afV~f~~~~~a~~ 65 (99)
T 1whw_A 18 YTSSEEDLEKLFS-AYGP-LSEL----HYPIDSLTKKPKGFAFVTFMFPEHAVK 65 (99)
T ss_dssp TTCCHHHHHHHHH-TTSC-EEEE----ECCCCTTTCCCCSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-EeEE----EEEecCCCCCcCeEEEEEECCHHHHHH
Confidence 4577889998885 4553 1121 22223334667777776 777776654
No 69
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=40.69 E-value=59 Score=19.63 Aligned_cols=47 Identities=19% Similarity=0.360 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.+||++.++ .||. =.++.+ ...-..+.+.|||.| |+|.+.|..
T Consensus 16 ~~~t~~~l~~~F~-~~G~-i~~v~i----~~~~~~~~~~g~afV~f~~~~~A~~ 63 (87)
T 3bs9_A 16 PEITTAAIAAAFA-PFGR-ISDARV----VKDMATGKSKGYGFVSFFNKWDAEN 63 (87)
T ss_dssp TTCCHHHHHHHHG-GGSC-EEEEEE----EECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-EeEEEE----EecCCCCccceEEEEEECCHHHHHH
Confidence 4578889998885 4554 122222 233345678888877 777777654
No 70
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=40.60 E-value=54 Score=21.77 Aligned_cols=55 Identities=16% Similarity=0.351 Sum_probs=32.1
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHhCCCC--CCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 26 VIDVLHPGRANVSKAELKEKLARMYEVKD--PNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 26 ~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~--~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
.+-|-.- ..+.+.+||++.+.. |+... .++.++.+ . . +.+.|||.| |.+.+.+.+
T Consensus 19 ~l~V~nL-p~~~te~~l~~~F~~-~G~~~~v~~v~i~~~---~-~-g~~~G~afV~F~~~~~a~~ 76 (118)
T 2db1_A 19 VVKLRGL-PWSCSIEDVQNFLSD-CTIHDGVAGVHFIYT---R-E-GRQSGEAFVELESEDDVKL 76 (118)
T ss_dssp EEEEESC-CTTCCHHHHHHHTTT-SCBTTGGGGEEEEEC---S-S-SCEEEEEEEEBSSHHHHHH
T ss_pred EEEEeCC-CCCCCHHHHHHHHHH-cCCccCceeEEEEEC---C-C-CCCCeEEEEEECCHHHHHH
Confidence 3444443 356778899888854 45301 23333332 2 2 678899987 777776654
No 71
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=40.51 E-value=67 Score=20.20 Aligned_cols=45 Identities=13% Similarity=0.314 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHH
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAK 86 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 86 (135)
...+.++|++-+ ..||. =.++.++. .- .+.+.|||.| |.|.+.+.
T Consensus 19 ~~~t~~~l~~~F-~~~G~-i~~v~i~~----~~-~g~~~g~afV~f~~~~~a~ 64 (102)
T 2xs2_A 19 VRMDETEIRSFF-ARYGS-VKEVKIIT----DR-TGVSKGYGFVSFYNDVDVQ 64 (102)
T ss_dssp TTCCHHHHHHHH-GGGSC-EEEEEEEE----CT-TSCEEEEEEEEESSCCCHH
T ss_pred CCCCHHHHHHHH-HhCCC-eEEEEEEE----CC-CCCccceEEEEECCHHHHH
Confidence 467888998877 44554 12222222 22 5678888877 55554443
No 72
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=40.41 E-value=62 Score=21.28 Aligned_cols=46 Identities=24% Similarity=0.346 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.+||++.++. ||. =.++.++.+- .+.+.|||.| |.|.+.|.+
T Consensus 45 ~~~t~~~l~~~F~~-~G~-v~~v~i~~~~-----~g~~~g~afV~f~~~~~A~~ 91 (124)
T 2kt5_A 45 FGVSDADIQELFAE-FGT-LKKAAVDYDR-----SGRSLGTADVHFERRADALK 91 (124)
T ss_dssp SSCCHHHHHHHHHT-TSC-CSEEEEECCS-----SSSCCSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eeEEEEEECC-----CCCEeeEEEEEECCHHHHHH
Confidence 45788899988855 554 2344333332 3566777776 777776654
No 73
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.30 E-value=67 Score=20.12 Aligned_cols=47 Identities=23% Similarity=0.314 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHhc
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKKF 88 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk~ 88 (135)
...+.+||++.++ .|+. =.++.++ ..- .+.+.|||.| |++.+.|.+.
T Consensus 27 ~~~t~~~l~~~F~-~~G~-i~~v~i~----~~~-~g~~~g~afV~f~~~~~a~~A 74 (100)
T 2do4_A 27 FSCTKEELEEICK-AHGT-VKDLRLV----TNR-AGKPKGLAYVEYENESQASQA 74 (100)
T ss_dssp TTCCHHHHHHHHT-TTSC-EEEEEEE----ECT-TSCEEEEEEEEESSHHHHHHH
T ss_pred CCCCHHHHHHHHH-hCCC-eEEEEEE----ECC-CCCEEeEEEEEECCHHHHHHH
Confidence 4567889988884 4553 1222222 222 5778888877 7887776543
No 74
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=40.13 E-value=77 Score=20.75 Aligned_cols=45 Identities=16% Similarity=0.375 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
.+.+.++|++.+ ..||. =.++-++.+ .+.+.|||.| |++.+.|.+
T Consensus 15 ~~~te~~L~~~F-~~~G~-v~~v~i~~d------~~~~kg~afV~f~~~~~A~~ 60 (115)
T 4f25_A 15 KSIDNKALYDTF-SAFGN-ILSCKVVCD------ENGSKGYGFVHFETQEAAER 60 (115)
T ss_dssp TTCCHHHHHHHH-GGGSC-EEEEEEEEE------TTEEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHH-hccCC-EEEEEEeec------CCCCCceEEEEECCHHHHHH
Confidence 567788999887 45664 223333322 2346788876 677776644
No 75
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=40.10 E-value=79 Score=20.91 Aligned_cols=47 Identities=19% Similarity=0.430 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.+ ..||. =.+..++ .....+.+.|||.| |+|.+.|.+
T Consensus 97 ~~~t~~~l~~~f-~~~G~-i~~~~i~----~~~~~~~~~g~afV~f~~~~~A~~ 144 (166)
T 3md3_A 97 VNVDDETLRNAF-KDFPS-YLSGHVM----WDMQTGSSRGYGFVSFTSQDDAQN 144 (166)
T ss_dssp TTCCHHHHHHHH-TTSTT-EEEEEEE----ECTTTCCEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHH-hccCC-eeEEEEE----ecCCCCCcceEEEEEeCCHHHHHH
Confidence 456788888888 44554 2233333 23345678888887 777777654
No 76
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=40.01 E-value=31 Score=23.89 Aligned_cols=44 Identities=23% Similarity=0.206 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHH---hHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHH
Q 032727 35 ANVSKAELKEKLA---RMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAK 86 (135)
Q Consensus 35 ~Tpsr~eIk~kLA---~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 86 (135)
...+..++++.|- ..||. -..|.+. . .+.+.|||.| |+|.+.|.
T Consensus 39 ~~~~e~~L~~~L~~~F~~~G~--I~~v~i~--~----~~~~rG~aFV~F~~~~~A~ 86 (127)
T 2a3j_A 39 PEVPKEKLQALLYALASSQGD--ILDIVVD--L----SDDNSGKAYIVFATQESAQ 86 (127)
T ss_dssp TTSCHHHHHHHHHHHHHHHSC--EEEEEEC--C----CCSSCCCEEEEESSHHHHH
T ss_pred CCCCHHHHHHHHHHHhccCCC--eEEEEec--c----CCCcCCEEEEEECCHHHHH
Confidence 5567778876443 45554 1223332 2 2456677766 67766554
No 77
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=39.54 E-value=89 Score=21.35 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.+||++.++ .|+. =.++. |...-..+.+.|||.| |.|.+.|.+
T Consensus 49 ~~~t~~~l~~~F~-~~G~-i~~v~----i~~~~~~~~~~g~afV~f~~~~~A~~ 96 (156)
T 1h2v_Z 49 FYTTEEQIYELFS-KSGD-IKKII----MGLDKMKKTACGFCFVEYYSRADAEN 96 (156)
T ss_dssp TTCCHHHHHHHHG-GGSC-EEEEE----EEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEE----EEecCCCCccceEEEEEECCHHHHHH
Confidence 4567889888884 4554 12222 3333345678888887 778776654
No 78
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.45 E-value=67 Score=20.24 Aligned_cols=45 Identities=4% Similarity=0.129 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++. |+. =.++.++.+ -+. +.|||.| |.|.+.|.+
T Consensus 25 ~~~t~~~l~~~F~~-~G~-i~~v~i~~~----~~~--~~g~afV~f~~~~~a~~ 70 (103)
T 2cqi_A 25 RDVTEVLILQLFSQ-IGP-CKSCKMITE----HTS--NDPYCFVEFYEHRDAAA 70 (103)
T ss_dssp TTCCHHHHHHHHHH-HSC-EEEEEEECC----CCS--SCCEEEEEESSHHHHHH
T ss_pred ccCCHHHHHHHHHh-cCC-EeEEEEEec----CCC--CCCEEEEEECCHHHHHH
Confidence 45688899988854 554 233434433 122 3567766 677666643
No 79
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.43 E-value=75 Score=20.41 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++ .|+. =.++- |...- .+.+.|||.| |.+.+.+.+
T Consensus 35 ~~~t~~~l~~~F~-~~G~-i~~~~----i~~~~-~g~~~g~afV~f~~~~~a~~ 81 (114)
T 1x5o_A 35 LSMDEQELENMLK-PFGQ-VISTR----ILRDS-SGTSRGVGFARMESTEKCEA 81 (114)
T ss_dssp TTCCHHHHHHTTT-TTSC-EEEEE----EEECS-SSCEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-EEEEE----EEECC-CCCcceEEEEEECCHHHHHH
Confidence 4567788877763 3443 12222 22222 5778888887 777776654
No 80
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=39.32 E-value=11 Score=22.54 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++-++. +|. =.+..++ .....+.+.|||.| |.|.+.+..
T Consensus 9 ~~~t~~~l~~~F~~-~G~-i~~v~i~----~~~~~~~~~g~afV~f~~~~~a~~ 56 (75)
T 1iqt_A 9 PDTPEEKIREYFGG-FGE-VESIELP----MDNKTNKRRGFCFITFKEEEPVKK 56 (75)
T ss_dssp SSCCHHHHHHHHHH-HSC-CSEECCC----CSCCCSSSCCCEEEECSSSHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEEEE----ecCCCCCcCCEEEEEECCHHHHHH
Confidence 45678899988855 554 2333222 22334567777776 666665544
No 81
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0
Probab=38.74 E-value=48 Score=24.08 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHHhHhCCCCCCeEEEec
Q 032727 36 NVSKAELKEKLARMYEVKDPNAIFVFK 62 (135)
Q Consensus 36 Tpsr~eIk~kLA~~~~~~~~~~IvV~~ 62 (135)
..++...-..|++.+|+ +++.++++|
T Consensus 198 ~~~K~~~l~~l~~~lgi-~~~~~i~~G 223 (274)
T 3fzq_A 198 DFHKGKAIKRLQERLGV-TQKETICFG 223 (274)
T ss_dssp TCSHHHHHHHHHHHHTC-CSTTEEEEC
T ss_pred CCCHHHHHHHHHHHcCC-CHHHEEEEC
Confidence 36888999999999999 766666654
No 82
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=38.73 E-value=1.2e+02 Score=22.53 Aligned_cols=57 Identities=23% Similarity=0.323 Sum_probs=40.4
Q ss_pred eEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe---eCCHHHHHhc
Q 032727 23 KQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI---YDSVENAKKF 88 (135)
Q Consensus 23 kEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I---Yds~e~~kk~ 88 (135)
.+++|.|.-. .++.||++.+-.+|++ ++.-|..+... +|.=.+|+.. ||.+|.|.++
T Consensus 88 N~~vF~Vd~k----AnK~qIK~AVEklf~V---kV~kVNTl~~p--~g~KKAyV~La~~~dAldvAnki 147 (150)
T 4a17_R 88 NTMVFYVHNR----STKPQIKSAFEKLYNV---KVRSVNTLNTI--TGNKKAYIRLAADSDSLTLANKI 147 (150)
T ss_dssp SEEEEEECTT----CCHHHHHHHHHHHHCC---CEEEEEEEECT--TSCEEEEEEECSSSCHHHHHHHH
T ss_pred CEEEEEEcCC----CCHHHHHHHHHHHhCC---ceeEEEeeEcC--CCcEEEEEEcCCCCcHHHHHHhh
Confidence 5778877543 6799999999999999 56666666654 3455667666 6666666543
No 83
>2zws_A Neutral ceramidase; prism fold and beta-sandwich fold, hydrolase, lipid metaboli secreted; HET: PLM; 1.40A {Pseudomonas aeruginosa} PDB: 2zxc_A*
Probab=38.17 E-value=22 Score=31.75 Aligned_cols=44 Identities=18% Similarity=0.201 Sum_probs=34.3
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHhC--CCCCCeEEEeceeecCCCC
Q 032727 26 VIDVLHPGRANVSKAELKEKLARMYE--VKDPNAIFVFKFRTHFGGG 70 (135)
Q Consensus 26 ~~~v~H~g~~Tpsr~eIk~kLA~~~~--~~~~~~IvV~~~~T~fG~~ 70 (135)
.+.+.-.+....-+.+|+++|++.|+ . ++++|+|..-.||-|-+
T Consensus 58 ~Vs~D~~~~~~~v~~~V~~~L~~~~g~~~-~~~nV~isaTHTHSgP~ 103 (646)
T 2zws_A 58 YVNTDLGMIFQAVHLKVLARLKAKYPGVY-DENNVMLAATHTHSGPG 103 (646)
T ss_dssp EEEESSSCCCHHHHHHHHHHHHHHSTTTC-CTTTEEEEECCBSBEEC
T ss_pred EEEECcccCCHHHHHHHHHHHHHHhCCCC-ChhHEEEEeeeeCCCCc
Confidence 33333333344457899999999999 8 99999999999999875
No 84
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=37.97 E-value=78 Score=23.68 Aligned_cols=46 Identities=24% Similarity=0.411 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
.+.+..+|++.+ ..||. =.++.++.+ ..|.+.|||.| |+|.+.|.+
T Consensus 106 ~~~t~~~l~~~F-~~~G~-i~~v~i~~~-----~~g~~~g~afV~f~~~~~A~~ 152 (261)
T 3sde_A 106 PVVSNELLEQAF-SQFGP-VEKAVVVVD-----DRGRATGKGFVEFAAKPPARK 152 (261)
T ss_dssp TTCCHHHHHHHH-GGGSC-EEEEEEEEE-----TTSCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHH-HhcCC-eEEEEeeeC-----CCCCcCcEEEEEeCCHHHHHH
Confidence 456788998888 45665 234444333 24667888876 777766543
No 85
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=37.91 E-value=80 Score=20.30 Aligned_cols=47 Identities=19% Similarity=0.388 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.+||++.++ .|+. =.++. |......+.+.|||.| |++.+.|.+
T Consensus 25 ~~~t~~~l~~~F~-~~G~-i~~v~----i~~~~~~~~~~g~afV~f~~~~~a~~ 72 (115)
T 2dgo_A 25 PEITTEDIKAAFA-PFGR-ISDAR----VVKDMATGKSKGYGFVSFFNKWDAEN 72 (115)
T ss_dssp TTCCHHHHHHHHG-GGSC-EEEEE----EEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEE----EEEcCCCCCcceEEEEEECCHHHHHH
Confidence 4577889988885 5554 12222 2333345778888877 677776654
No 86
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=37.36 E-value=66 Score=21.74 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=32.2
Q ss_pred eeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEecee
Q 032727 13 KFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFR 64 (135)
Q Consensus 13 k~~~N~LL~RkEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~ 64 (135)
.+....|+...+++|.|.-. .++.||++.+-++|++ ++.-|..+.
T Consensus 12 TEKa~~~~e~n~~~F~V~~~----AnK~qIK~aVe~lf~V---kV~~VnT~~ 56 (92)
T 3tve_T 12 SEKAYAGFAEGKYTFWVHPK----ATKTEIKNAVETAFKV---KVVKVNTLH 56 (92)
T ss_dssp SHHHHTTTTTTEEEEEECTT----CCHHHHHHHHHHHTTC---CEEEEEEEE
T ss_pred CHHHHHHhhCCEEEEEECCC----CCHHHHHHHHHHHhCC---ceeeeeeee
Confidence 34445567778889887543 6799999999999999 444444443
No 87
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=37.26 E-value=76 Score=19.87 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHhHhCCCCCC--------eEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPN--------AIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~--------~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.+||++.++ .+|. -.+ .-+ ...-..+.+.|||.| |.|.+.+.+
T Consensus 23 ~~~t~~~l~~~F~-~~G~-i~~~~~~~~~~v~i----~~~~~~g~~~G~afV~f~~~~~a~~ 78 (99)
T 2la6_A 23 ENVTIESVADYFK-QIGI-IKTNKKTGQPMINL----YTDRETGKLKGEATVSFDDPPSAKA 78 (99)
T ss_dssp SSCCHHHHHHHHT-TTSC-BCEETTTTEESEEE----EECTTTCSEEEEEEEEBSSHHHHHH
T ss_pred CCCCHHHHHHHHH-HhCC-EeeccccccccEEE----EecCCCCCeeeEEEEEECCHHHHHH
Confidence 4577889988885 4554 222 222 232345678889887 777776654
No 88
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.18 E-value=24 Score=23.56 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHH
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAK 86 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 86 (135)
+..+..+|++.+ ..||. =.++.++ +.+.|||.| |++.+.|.
T Consensus 27 ~~~te~~L~~~F-~~~G~-V~~v~i~---------~~~rGfaFVeF~~~~~A~ 68 (100)
T 2d9o_A 27 GGYSKDVLLRLL-QKYGE-VLNLVLS---------SKKPGTAVVEFATVKAAE 68 (100)
T ss_dssp CSCCHHHHHHHH-HTTSC-EEEEEEE---------SSSSSEEEEEESCHHHHH
T ss_pred CCCCHHHHHHHH-HhcCC-EEEEEEc---------cCCCCEEEEEECCHHHHH
Confidence 456788888888 45664 2333333 356788876 66666553
No 89
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=37.10 E-value=70 Score=19.41 Aligned_cols=47 Identities=23% Similarity=0.412 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+..+|++.+ ..||. =.++.++ ..-..+.+.|||.| |.|.+.+.+
T Consensus 21 ~~~t~~~l~~~F-~~~G~-i~~v~i~----~~~~~g~~~g~afV~f~~~~~a~~ 68 (87)
T 3s7r_A 21 WDTSKKDLKDYF-TKFGE-VVDCTIK----MDPNTGRSRGFGFILFKDAASVEK 68 (87)
T ss_dssp TTCCHHHHHHHH-TTTSC-EEEEEEE----ECTTTCCEEEEEEEEESSTHHHHH
T ss_pred CCCCHHHHHHHH-HhCCC-EEEEEEe----ecCCCCccccEEEEEECCHHHHHH
Confidence 456788888887 44554 1223222 33345678888887 677666654
No 90
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=36.58 E-value=36 Score=21.51 Aligned_cols=50 Identities=12% Similarity=0.170 Sum_probs=31.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHhc
Q 032727 27 IDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKKF 88 (135)
Q Consensus 27 ~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk~ 88 (135)
+-|-+- ....+.++|++.++ .||. =.++.++. .+.|||.| |++.+.|...
T Consensus 14 l~V~~L-p~~~te~~L~~~F~-~~G~-i~~v~i~~---------~srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 14 VFVGRC-TEDMTAEELQQFFC-QYGE-VVDVFIPK---------PFRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp EEEESC-CTTCCHHHHHHHHT-TTSC-EEEEECCS---------SCCSEEEEEESCHHHHHHH
T ss_pred EEEeCC-CCCCCHHHHHHHHh-ccCC-EEEEEEee---------CCCCEEEEEECCHHHHHHH
Confidence 344443 45667888888884 4564 22333322 27788887 8999988743
No 91
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=36.52 E-value=26 Score=21.85 Aligned_cols=40 Identities=13% Similarity=0.204 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.+||++.++.. .+ .++ .|. .+.|||.| |.+.+.+..
T Consensus 15 ~~~t~~~l~~~F~~~-~v--~~~-~i~---------~~~g~afV~f~~~~~a~~ 55 (88)
T 1wg1_A 15 QDSNCQEVHDLLKDY-DL--KYC-YVD---------RNKRTAFVTLLNGEQAQN 55 (88)
T ss_dssp SSCCHHHHHHHTCSS-CC--CCE-EEE---------GGGTEEEECCSCHHHHHH
T ss_pred CCCCHHHHHHHHhhC-Ce--EEE-EEe---------CCCcEEEEEECCHHHHHH
Confidence 567788999888666 66 333 332 56678877 667666543
No 92
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=36.52 E-value=35 Score=21.31 Aligned_cols=42 Identities=31% Similarity=0.381 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+..+|++.++. ++. |..+ ...+.+.|||.| |.|.+.|.+
T Consensus 26 ~~~t~~~l~~~F~~-~g~-------v~~~---~~~~~~~g~afV~f~~~~~a~~ 68 (96)
T 1fjc_A 26 FNITEDELKEVFED-ALE-------IRLV---SQDGKSKGIAYIEFKSEADAEK 68 (96)
T ss_dssp SSCCHHHHHHHHCS-EEE-------ECCE---EETTEEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHhh-CCc-------EEEe---CCCCCcceEEEEEECCHHHHHH
Confidence 45678888887754 332 1111 345678899988 777776654
No 93
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=36.45 E-value=1.3e+02 Score=22.37 Aligned_cols=62 Identities=23% Similarity=0.370 Sum_probs=42.6
Q ss_pred cCccc-eEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe---eCCHHHHHhc
Q 032727 18 RLLSR-KQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI---YDSVENAKKF 88 (135)
Q Consensus 18 ~LL~R-kEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I---Yds~e~~kk~ 88 (135)
.|+.. .+++|.|.-. -++.||++.+-.+|++ ++.-|..+... .|.=.+|+.. ||.+|.+.++
T Consensus 84 ~~~E~~N~~vF~Vd~~----AnK~qIK~AVEklf~V---kV~kVNTl~~~--~g~KKAyV~L~~~~daldvAnki 149 (152)
T 3iz5_X 84 KKIEDNNTLVFIVDLK----ADKKKIKAAVKKMYDI---QAKKVNTLIRP--DGKKKAYVKLTPDYDALDVANKI 149 (152)
T ss_dssp HHHHHHSEEEEEECSS----CCSHHHHHHHHHHHTC---CEEEEEEEECT--TSSEEEEEEECTTSCHHHHHGGG
T ss_pred HHHHhCCEEEEEEcCC----CCHHHHHHHHHHHhCC---cceEEEeeEcC--CCceEEEEEcCCCCcHHHHHHhh
Confidence 34443 5788887553 6799999999999999 66666666654 4555667766 5556665543
No 94
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.32 E-value=68 Score=20.69 Aligned_cols=47 Identities=9% Similarity=0.171 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+..||++.+ ..||. =.++. |...-..+.+.|||.| |.+.+.+.+
T Consensus 35 ~~~t~~~l~~~F-~~~G~-i~~v~----i~~~~~~g~~~g~afV~f~~~~~a~~ 82 (114)
T 2cq4_A 35 ARIRPRDLEDFF-SAVGK-VRDVR----IISDRNSRRSKGIAYVEFCEIQSVPL 82 (114)
T ss_dssp TTCCHHHHHHHH-TTTSC-EEEEE----ECCSCCSSSCCCCEEEEESCGGGHHH
T ss_pred CCCCHHHHHHHH-HhCCC-EeEEE----EEecCCCCccCcEEEEEeCcHHHHHH
Confidence 456788888877 44553 12222 2222333567778876 777666654
No 95
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=36.32 E-value=1.3e+02 Score=22.15 Aligned_cols=60 Identities=20% Similarity=0.376 Sum_probs=41.4
Q ss_pred Cccc-eEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe---eCCHHHHHh
Q 032727 19 LLSR-KQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI---YDSVENAKK 87 (135)
Q Consensus 19 LL~R-kEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I---Yds~e~~kk 87 (135)
|+.. .+++|.|.-. -++.||++.+-++|++ ++.-|..+... +|.=.+|+.. ||.+|.|.+
T Consensus 75 ~~E~~N~~vF~Vd~~----AnK~qIK~AVEklf~V---kV~kVNTl~~~--~g~KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 75 KVEDGNILVFQVSMK----ANKYQIKKAVKELYEV---DVLKVNTLVRP--NGTKKAYVRLTADYDALDIANR 138 (142)
T ss_dssp HHHHHCEEEEEECTT----CCHHHHHHHHHHHHSC---CEEEEEEEECT--TSCEEEEEEECTTCCHHHHHHH
T ss_pred HHHhCCEEEEEEcCC----CCHHHHHHHHHHHhCC---ceeEEEeeEcC--CCceEEEEEeCCCCcHHHHHHh
Confidence 4443 5788887553 5699999999999999 56666666554 3555667776 555665554
No 96
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.16 E-value=39 Score=21.31 Aligned_cols=47 Identities=15% Similarity=0.314 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++. |+. =.++.++.+ ...+.+.|||.| |.|.+.|.+
T Consensus 22 ~~~t~~~l~~~f~~-~G~-i~~v~i~~~----~~~~~~~g~afV~f~~~~~A~~ 69 (102)
T 2cqb_A 22 EEVDDKVLHAAFIP-FGD-ITDIQIPLD----YETEKHRGFAFVEFELAEDAAA 69 (102)
T ss_dssp SSCCHHHHHHHHTT-TSC-CCCEECCCC----SSSCCCSSEEEECCSSHHHHHH
T ss_pred CCCCHHHHHHHhhc-cCC-EEEEEEEec----CCCCCcceEEEEEECCHHHHHH
Confidence 45678899888855 554 244443332 233567788877 667666644
No 97
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=35.90 E-value=40 Score=20.42 Aligned_cols=48 Identities=19% Similarity=0.301 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.+||++.++. ||. ..-|.=+.....++.+.|||.| |.|.+.|.+
T Consensus 14 ~~~t~~~l~~~F~~-~G~----i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~ 62 (88)
T 4a8x_A 14 RNVTKDHIMEIFST-YGK----IKMIDMPVERMHPHLSKGYAYVEFENPDEAEK 62 (88)
T ss_dssp TTCCHHHHHHHHHT-TSC----EEEEECCEETTEEEEECSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-CCC----EEEEEEEeCCCCCCCCCcEEEEEEecHHHHHH
Confidence 45678899888844 553 1222222233333457888876 777776654
No 98
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.64 E-value=52 Score=20.81 Aligned_cols=46 Identities=13% Similarity=0.210 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHH
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAK 86 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 86 (135)
...+.++|++.++ .|+. =.++ .|...-..+.+.|||.| |.|.+.|.
T Consensus 23 ~~~t~~~l~~~f~-~~G~-i~~v----~i~~~~~~~~~~g~afV~f~~~~~A~ 69 (103)
T 2dnm_A 23 YRTSPDSLRRVFE-KYGR-VGDV----YIPREPHTKAPRGFAFVRFHDRRDAQ 69 (103)
T ss_dssp TTCCHHHHHHHHT-TTSC-EEEE----ECCBCSSSCSBCSCEEEEESSSSHHH
T ss_pred CCCCHHHHHHHHH-hcCC-EEEE----EEEeCCCCCCCCeEEEEEECCHHHHH
Confidence 4577889888774 4443 1122 22222233556677766 66655544
No 99
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.37 E-value=44 Score=20.28 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHhc
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKKF 88 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk~ 88 (135)
...+.++|++.++ .|+. |.-..+...-..+.+.|||.| |.|.+.|...
T Consensus 15 ~~~t~~~l~~~f~-~~G~-----i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A 63 (85)
T 1x4e_A 15 PGTTDQDLVKLCQ-PYGK-----IVSTKAILDKTTNKCKGYGFVDFDSPSAAQKA 63 (85)
T ss_dssp TTCCHHHHHTTST-TTSC-----EEEEEEECCSSSCSCCSEEEEEESCHHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-----eEEEEEEecCCCCCcCcEEEEEECCHHHHHHH
Confidence 4567778776663 3443 221223333345677888877 7888777653
No 100
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=35.30 E-value=95 Score=20.41 Aligned_cols=51 Identities=12% Similarity=0.164 Sum_probs=32.6
Q ss_pred CCCCccEEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEec
Q 032727 1 MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFK 62 (135)
Q Consensus 1 m~~~~~~~i~~~k~~~N~LL~RkEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~ 62 (135)
|+.. .++|++.. .+.+++.|.|.- |=+-..|.++.|+..+++...+-|+|+
T Consensus 1 ~~~~-~i~ikVk~------~~g~~v~~~vk~----~t~l~kl~~~y~~~~gi~~~~~rf~Fd 51 (91)
T 2io0_B 1 MAND-HINLKVAG------QDGSVVQFKIKR----HTPLSKLMKAYCERQGLSMRQIRFRFD 51 (91)
T ss_dssp ---C-EEEEEEEC------TTSCEEEEEEET----TSCTHHHHHHHHHHTTCCSTTEEEEET
T ss_pred CCCC-eEEEEEEC------CCCCEEEEEECC----CChHHHHHHHHHHHhCCCcccEEEEEC
Confidence 5544 58888874 234578888743 344678999999999994444455553
No 101
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=35.21 E-value=1.1e+02 Score=21.21 Aligned_cols=54 Identities=15% Similarity=0.327 Sum_probs=31.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHhCCCC--CCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 27 IDVLHPGRANVSKAELKEKLARMYEVKD--PNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 27 ~~v~H~g~~Tpsr~eIk~kLA~~~~~~~--~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
+-|-.- ..+.+.+||++-++. ++.-+ .++.++.+ . - |.+.|||.| |+|.+.|.+
T Consensus 47 lfVgnL-p~~~te~dL~~~F~~-~G~v~~v~~v~i~~d---~-~-g~srG~aFV~F~~~e~a~~ 103 (136)
T 2hgl_A 47 VKLRGL-PWSCSVEDVQNFLSD-CTIHDGAAGVHFIYT---R-E-GRQSGEAFVELGSEDDVKM 103 (136)
T ss_dssp EEEESC-CTTCCHHHHHHHTTT-CCCSSSSTTEEEEEC---S-S-SCEEEEEEEECSSHHHHHH
T ss_pred EEEeCC-CCCCCHHHHHHHHHH-hCCcCceeEEEEEEC---C-C-CCCCeEEEEEECCHHHHHH
Confidence 334443 356788899888854 55301 24444433 1 2 678899987 667666543
No 102
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=35.15 E-value=97 Score=21.03 Aligned_cols=53 Identities=15% Similarity=0.170 Sum_probs=29.9
Q ss_pred EEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 28 DVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 28 ~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
-|-.- ....+.++|++.+ ..||. =.++.++. .-..|.+.|||.| |.|.+.+.+
T Consensus 74 ~v~nl-~~~~~~~~l~~~F-~~~G~-v~~~~i~~----~~~~g~~~g~afV~f~~~~~a~~ 127 (158)
T 2kn4_A 74 KVDNL-TYRTSPDTLRRVF-EKYGR-VGDVYIPR----DRYTKESRGFAFVRFHDKRDAED 127 (158)
T ss_dssp EEESC-CTTCCHHHHHHHH-HHHSC-EEEEECCC----CSSCTTSCCEEEEEESBHHHHHH
T ss_pred EEeCC-CCCCCHHHHHHHH-HhcCC-eEEEEEee----cCCCCccceEEEEEECCHHHHHH
Confidence 34443 3567889999888 55664 12222222 2124556777776 777766644
No 103
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.13 E-value=81 Score=19.60 Aligned_cols=47 Identities=11% Similarity=0.196 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHhHhCCCCC-CeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDP-NAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~-~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.+||++.++. |+. -. ++-++. .-..+.+.|||.| |.|.+.|.+
T Consensus 19 ~~~t~~~l~~~F~~-~G~-i~~~v~i~~----~~~~g~~~g~afV~f~~~~~a~~ 67 (99)
T 2div_A 19 PYMDENFISRAFAT-MGE-TVMSVKIIR----NRLTGIPAGYCFVEFADLATAEK 67 (99)
T ss_dssp TTCCHHHHHHHHHH-TTC-CCCEEEEEE----CSSSCCEEEEEEEECSCHHHHHH
T ss_pred CCCCHHHHHHHHHH-hCC-cceEEEEee----cCCCCCcCCEEEEEeCCHHHHHH
Confidence 45778899988854 554 23 443433 2235678889887 677776654
No 104
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=34.63 E-value=51 Score=21.41 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.+||++.++ .||. |.-..|...-..+.+.|||.| |.|.+.+.+
T Consensus 50 ~~~t~~~l~~~F~-~~G~-----i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ 97 (118)
T 2khc_A 50 QEFTDTDLASTFL-PFGN-----VISAKVFIDKQTSLSKCFGFVSFDNPDSAQV 97 (118)
T ss_dssp TTCCHHHHHHHTT-TSCE-----EEEEEECCCSSSSCCCCEEEEEEESSHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-----EEEEEEEeCCCCCCcCcEEEEEECCHHHHHH
Confidence 4567888888774 4553 221222222234566777766 666555543
No 105
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.55 E-value=50 Score=22.08 Aligned_cols=54 Identities=15% Similarity=0.302 Sum_probs=32.6
Q ss_pred EEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 25 FVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 25 i~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
..+-|-.- ..+.+.+||++-+... ++ .++.++.+ .- |.+.|||.| |.+.+.|.+
T Consensus 17 ~~v~V~nL-p~~~te~dl~~~F~~~-~v--~~v~i~~d---~~--g~~~G~afV~F~~~~~a~~ 71 (109)
T 2dnn_A 17 LYVSVHGM-PFSAMENDVRDFFHGL-RV--DAVHLLKD---HV--GRNNGNGLVKFLSPQDTFE 71 (109)
T ss_dssp HEEEEECC-CSSCCHHHHHHHTTTS-CC--CEEEECCC---TT--CCCCSEEEEECSSHHHHHH
T ss_pred CEEEEeCC-CCCCCHHHHHHHhccC-Ce--eEEEEEEC---CC--CCCCeEEEEEECCHHHHHH
Confidence 34445443 3567889999988665 66 35555443 22 566788877 556555543
No 106
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=34.53 E-value=87 Score=19.76 Aligned_cols=46 Identities=24% Similarity=0.286 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.+. .|+. =.++.++ ... .+.+.|||.| |.+.+.|.+
T Consensus 39 ~~~t~~~l~~~F~-~~G~-i~~v~i~----~~~-~g~~~g~afV~f~~~~~a~~ 85 (107)
T 3ulh_A 39 FGVSDADIQELFA-EFGT-LKKAAVH----YDR-SGRSLGTADVHFERKADALK 85 (107)
T ss_dssp TTCCHHHHHHHHH-TTSC-EEEEEEE----ECT-TSCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEEEE----ECC-CCCcceEEEEEECCHHHHHH
Confidence 4567888988885 4554 1222222 222 6678888887 788777754
No 107
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=34.45 E-value=33 Score=24.34 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=21.2
Q ss_pred EEEEEEcC-CCCCCCHHHHH--HHH---HhHhCCCCCCeEEE
Q 032727 25 FVIDVLHP-GRANVSKAELK--EKL---ARMYEVKDPNAIFV 60 (135)
Q Consensus 25 i~~~v~H~-g~~Tpsr~eIk--~kL---A~~~~~~~~~~IvV 60 (135)
+.+.=.|| |.++||.+|+. ++| ++++++.=-|-|+|
T Consensus 71 vIl~HNHPSG~~~PS~~D~~~T~~l~~a~~ll~I~llDHiIi 112 (126)
T 2qlc_A 71 IILVHNHPSGDVQPSNADKQVTSILKKAGDLLQIELLDHVIV 112 (126)
T ss_dssp EEEEEECSSSCCSCCHHHHHHHHHHHHHHHHHTCEEEEEEEE
T ss_pred EEEEecCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEeeeEEE
Confidence 44445788 67999999764 333 45556522344444
No 108
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.82 E-value=63 Score=19.87 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.+. .|+. =.++. +...-..+.+.|||.| |.|.+.+.+
T Consensus 26 ~~~t~~~l~~~f~-~~G~-v~~v~----i~~~~~~~~~~g~afV~f~~~~~A~~ 73 (94)
T 2e5h_A 26 FSLTNNDLYRIFS-KYGK-VVKVT----IMKDKDTRKSKGVAFILFLDKDSAQN 73 (94)
T ss_dssp TTSCHHHHHHHTT-TTSC-EEEEE----ECCCSSSCCCTTCEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEE----EEeCCCCCCcccEEEEEECCHHHHHH
Confidence 4567788887773 3443 11222 2222233556677766 777776654
No 109
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=33.61 E-value=62 Score=20.86 Aligned_cols=49 Identities=16% Similarity=0.045 Sum_probs=27.6
Q ss_pred EEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHH
Q 032727 24 QFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAK 86 (135)
Q Consensus 24 Ei~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 86 (135)
...+-|-.. ....+.+||++.++ .|+. =.++-++.+ |||.| |.+.+.|.
T Consensus 15 ~~~l~V~nL-p~~~t~~~l~~~F~-~~G~-i~~~~i~~~-----------g~afV~f~~~~~a~ 64 (108)
T 1x4c_A 15 ENRVVVSGL-PPSGSWQDLKDHMR-EAGD-VCYADVYRD-----------GTGVVEFVRKEDMT 64 (108)
T ss_dssp CCEEEEESC-CSSCCHHHHHHHHG-GGSC-EEEEEEETT-----------TEEEEEESSHHHHH
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHH-hcCC-EeEEEEecC-----------CEEEEEECCHHHHH
Confidence 344455554 35678889988774 5554 133333333 56665 66665543
No 110
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=33.58 E-value=92 Score=19.73 Aligned_cols=47 Identities=21% Similarity=0.190 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++ .|+. =.++.++ ...-.+.+.|||.| |.|.+.|.+
T Consensus 25 ~~~t~~~l~~~F~-~~G~-i~~v~i~----~~~~~g~~~g~afV~f~~~~~A~~ 72 (111)
T 1x4h_A 25 FDSEEEALGEVLQ-QFGD-LKYVRVV----LHPDTEHSKGCAFAQFMTQEAAQK 72 (111)
T ss_dssp TTCCHHHHHHHHH-TTSC-EEEEECC----BCSSSCCBCSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEEEE----ecCCCCCCccEEEEEECCHHHHHH
Confidence 4577889988885 4553 1222222 22234566777776 667666543
No 111
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.30 E-value=55 Score=21.26 Aligned_cols=45 Identities=16% Similarity=0.397 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.+ ..||. =.++.++.+ -| .+.|||.| |++.+.|.+
T Consensus 39 ~~~te~~l~~~F-~~~G~-i~~v~i~~~----~~--~~kg~afV~f~~~~~A~~ 84 (109)
T 2err_A 39 FRFRDPDLRQMF-GQFGK-ILDVEIIFN----ER--GSKGFGFVTFENSADADR 84 (109)
T ss_dssp TTCCHHHHHHHG-GGTCC-CSCEEECCB----TT--BCTTEEEEECCCSHHHHH
T ss_pred CcCCHHHHHHHH-HhcCC-EEEEEEEEC----CC--CCceEEEEEECCHHHHHH
Confidence 457788998888 45664 244444433 12 36677776 666655543
No 112
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.22 E-value=40 Score=21.77 Aligned_cols=47 Identities=19% Similarity=0.225 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHhHhCCCCC--------CeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDP--------NAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~--------~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++. |+. =. ++-++. .-..+.+.|||.| |.|.+.|.+
T Consensus 25 ~~~t~~~l~~~F~~-~G~-i~~~~~~~~~~v~i~~----~~~~g~~~g~afV~f~~~~~A~~ 80 (113)
T 2cpe_A 25 DSVTLDDLADFFKQ-CGV-VKMNKRTGQPMIHIYL----DKETGKPKGDATVSYEDPPTAKA 80 (113)
T ss_dssp TTCCHHHHHHHHTT-TSC-BCBCSSSCCBSEECCB----CTTTCSBCSEEEEEBSSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-EeEccccCccCEEEEE----eCCCCCeeeEEEEEECCHHHHHH
Confidence 45678899888754 454 12 232222 2234567788877 777776654
No 113
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.81 E-value=84 Score=19.64 Aligned_cols=42 Identities=12% Similarity=0.157 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+..+|++.++ .||. = ...++. | .+.|||.| |++.+.+.+
T Consensus 29 ~~~t~~~l~~~F~-~~G~-v-~~~~~~------~--~~~g~afV~f~~~~~a~~ 71 (97)
T 2e5j_A 29 RDARVSDLKRALR-ELGS-V-PLRLTW------Q--GPRRRAFLHYPDSAAAQQ 71 (97)
T ss_dssp TTCCHHHHHHHHH-HTTC-C-CSEEEE------E--TTTTEEEEECSSHHHHHH
T ss_pred CcCcHHHHHHHHH-hcCC-E-EEEEEc------C--CCCcEEEEEECCHHHHHH
Confidence 4577889998885 4554 1 233332 2 45567766 777776644
No 114
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.62 E-value=64 Score=19.95 Aligned_cols=47 Identities=15% Similarity=0.317 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCe-EEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNA-IFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~-IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++. |+. =.++ -++.+ -..+.+.|||.| |.|.+.|.+
T Consensus 15 ~~~t~~~l~~~F~~-~G~-i~~~~~i~~~----~~~g~~~g~afV~f~~~~~A~~ 63 (96)
T 1x5t_A 15 PEIDEKLLYDTFSA-FGV-ILQTPKIMRD----PDTGNSKGYAFINFASFDASDA 63 (96)
T ss_dssp TTCCHHHHHHHHHT-TSC-BSSCCEECCC----TTTCSCCSEEEEEBSSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eeEEEEEEEc----CCCCCcCeEEEEEECCHHHHHH
Confidence 45678899888855 554 2344 23322 234556677766 777776654
No 115
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=32.51 E-value=21 Score=21.88 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=23.7
Q ss_pred CHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 38 SKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 38 sr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
+.++|++.+ ..||. ...|.+. . ..|.+.|||.| |+|.+.|..
T Consensus 20 t~~~l~~~F-~~~G~--i~~v~i~---~--~~g~~~g~afV~f~~~~~A~~ 62 (81)
T 2krb_A 20 LKNVIHKIF-SKFGK--ITNDFYP---E--EDGKTKGYIFLEYASPAHAVD 62 (81)
T ss_dssp HHHHHHHHH-HTTCC--EEEEECC---C--BTTBCCCEEEEEESSHHHHHH
T ss_pred HHHHHHHHH-hhcCC--eEEEEec---C--CCCcEeEEEEEEECCHHHHHH
Confidence 346676666 34554 1222222 2 34577888877 777776654
No 116
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=32.09 E-value=98 Score=19.79 Aligned_cols=36 Identities=19% Similarity=0.437 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHH
Q 032727 37 VSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAK 86 (135)
Q Consensus 37 psr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 86 (135)
.+.+||++.++ .|+. ...|.+ +.|||.| |++.+.|.
T Consensus 40 ~t~~~l~~~F~-~~G~--v~~v~i-----------~~g~afV~f~~~~~A~ 76 (110)
T 1wf1_A 40 VKKSDVETIFS-KYGR--VAGCSV-----------HKGYAFVQYSNERHAR 76 (110)
T ss_dssp CCHHHHHHHHG-GGSC--CSEEEE-----------ETTEEEEECSSSHHHH
T ss_pred CCHHHHHHHHH-hCCC--eEEEEE-----------eCCEEEEEECCHHHHH
Confidence 67889998885 5664 344444 4567766 55555544
No 117
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0
Probab=32.05 E-value=55 Score=24.16 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=23.3
Q ss_pred EEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEec
Q 032727 28 DVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFK 62 (135)
Q Consensus 28 ~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~ 62 (135)
++..+| .++...-..|++.||+ +++.++++|
T Consensus 195 ei~~~~---~~K~~~l~~l~~~lgi-~~~~~i~~G 225 (290)
T 3dnp_A 195 NIVPKG---VSKEAGLALVASELGL-SMDDVVAIG 225 (290)
T ss_dssp EEEETT---CCHHHHHHHHHHHTTC-CGGGEEEEE
T ss_pred EEEECC---CCHHHHHHHHHHHcCC-CHHHEEEEC
Confidence 455543 6789999999999999 776666653
No 118
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=31.92 E-value=90 Score=19.15 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++ .|+. =.++.++. ... +.+.|||.| |.+.+.+.+
T Consensus 26 ~~~~~~~l~~~F~-~~G~-i~~v~i~~----~~~-g~~~g~afV~f~~~~~a~~ 72 (95)
T 2ywk_A 26 ARVREEILYELFL-QAGP-LTKVTICK----DRE-GKPKSFGFVCFKHPESVSY 72 (95)
T ss_dssp TTCCHHHHHHHHG-GGSC-EEEEEEEE----CTT-SCEEEEEEEEESSTHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-EEEEEEEE----CCC-CCCceEEEEEECCHHHHHH
Confidence 4567889988884 4554 12222222 222 678888877 666666654
No 119
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=31.75 E-value=58 Score=23.76 Aligned_cols=32 Identities=31% Similarity=0.287 Sum_probs=24.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEec
Q 032727 27 IDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFK 62 (135)
Q Consensus 27 ~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~ 62 (135)
++|.++| .++...-+.|++.|++ +++.++.+|
T Consensus 186 ~ei~~~~---~~K~~~l~~l~~~lgi-~~~~~ia~G 217 (268)
T 3r4c_A 186 ADVNVAG---TSKATGLSLFADYYRV-KVSEIMACG 217 (268)
T ss_dssp EEEEETT---CCHHHHHHHHHHHTTC-CGGGEEEEE
T ss_pred EEEeeCC---CCHHHHHHHHHHHcCC-CHHHEEEEC
Confidence 4566653 6889999999999999 777666664
No 120
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=31.23 E-value=89 Score=18.86 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++ .||. =.++.++ .....+.+.|||.| |.|.+.+.+
T Consensus 16 ~~~t~~~l~~~F~-~~G~-i~~v~i~----~~~~~~~~~g~afV~f~~~~~a~~ 63 (89)
T 3ucg_A 16 YGATAEELEAHFH-GCGS-VNRVTIL----CDKFSGHPKGFAYIEFSDKESVRT 63 (89)
T ss_dssp TTCCHHHHHHHHG-GGCC-EEEEEEE----ESCSSSSCCEEEEEEESSTHHHHH
T ss_pred CCCCHHHHHHHHH-hCCC-EEEEEEE----ecCCCCCcceEEEEEECCHHHHHH
Confidence 4567889998885 4554 1233232 33334566677766 666665544
No 121
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=31.16 E-value=70 Score=23.05 Aligned_cols=46 Identities=24% Similarity=0.346 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.+||++.++. |+. =.++.++.+- .+.+.|||.| |.+.+.|..
T Consensus 98 ~~~te~~L~~~F~~-~G~-I~~v~i~~d~-----~g~~kG~afV~F~~~~~A~~ 144 (177)
T 2f3j_A 98 FGVSDADIQELFAE-FGT-LKKAAVDYDR-----SGRSLGTADVHFERRADALK 144 (177)
T ss_dssp SCCCHHHHHHHHHH-TSC-CSEEEECCCT-----TSSCSCCEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEEEEECC-----CCCEeeEEEEEeCCHHHHHH
Confidence 45788999998865 554 2333333321 3566777766 677776654
No 122
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=31.00 E-value=1.7e+02 Score=21.90 Aligned_cols=54 Identities=20% Similarity=0.252 Sum_probs=30.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHhCCC-CCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHH
Q 032727 27 IDVLHPGRANVSKAELKEKLARMYEVK-DPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAK 86 (135)
Q Consensus 27 ~~v~H~g~~Tpsr~eIk~kLA~~~~~~-~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 86 (135)
|-|-.- ....+..+|++.+ ..|++. =.++.|+ +.--.+.+.|||.| |++.+.|.
T Consensus 71 lfVgnL-~~~~te~~L~~~F-~~~G~~~v~~v~i~----~d~~tg~skGfaFV~f~~~~~a~ 126 (229)
T 3q2s_C 71 LYIGNL-TWWTTDEDLTEAV-HSLGVNDILEIKFF----ENRANGQSKGFALVGVGSEASSK 126 (229)
T ss_dssp EEEESC-CTTCCHHHHHHHH-HTTTCCCEEEEEEE----ECTTTCCEEEEEEEEESCTTHHH
T ss_pred EEEeCC-CCCCCHHHHHHHH-HHHCCcceEEEEEE----ecCCCCccceEEEEEECCHHHHH
Confidence 334433 3567788999888 566630 1222222 23235677888877 66655443
No 123
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=30.96 E-value=1.1e+02 Score=19.81 Aligned_cols=48 Identities=25% Similarity=0.400 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHhc
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKKF 88 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk~ 88 (135)
...+..+|++.+ ..||. |.-..+...-..+.+.|||.| |.|.+.|...
T Consensus 36 ~~~te~~l~~~F-~~~G~-----i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A 84 (108)
T 2jrs_A 36 FNITEDMLRGIF-EPFGR-----IESIQLMMDSETGRSKGYGFITFSDSECAKKA 84 (108)
T ss_dssp SSCCHHHHHHHH-TTTSC-----EEEEEEEEETTTTEEEEEEEEEESCHHHHHHH
T ss_pred CCCCHHHHHHHH-HhcCC-----eEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 457788888887 44554 222223333456788999987 7888877653
No 124
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=30.81 E-value=94 Score=20.02 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=17.2
Q ss_pred CCCCHHHHHHHHHhHhCCCCCC
Q 032727 35 ANVSKAELKEKLARMYEVKDPN 56 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~ 56 (135)
++-+-.+|+++|+...|+ +++
T Consensus 27 ~~~TV~~lK~ki~~~~gi-p~~ 47 (95)
T 1v6e_A 27 RSLTIAEFKCKLELVVGS-PAS 47 (95)
T ss_dssp TTSBHHHHHHHHHHHTCS-CTT
T ss_pred ccCHHHHHHHHHHHHHCC-CHH
Confidence 456679999999999999 444
No 125
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.28 E-value=56 Score=20.54 Aligned_cols=44 Identities=32% Similarity=0.489 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.+||++.++. . .++.++..- ..+.+.|||.| |.|.+.|.+
T Consensus 25 ~~~t~~~l~~~F~~---~--~~~~~~~~~----~~~~~~g~afV~f~~~~~A~~ 69 (102)
T 2fc8_A 25 EDTTEETLKESFDG---S--VRARIVTDR----ETGSSKGFGFVDFNSEEDAKA 69 (102)
T ss_dssp TTCCHHHHHHTSTT---C--SEEEEEECS----SSCSEEEEEEEECSSHHHHHH
T ss_pred CccCHHHHHHHhcC---C--eEEEEEecC----CCCCcCcEEEEEECCHHHHHH
Confidence 45678888877752 2 233333322 34678888888 777777654
No 126
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.21 E-value=27 Score=23.00 Aligned_cols=49 Identities=6% Similarity=0.177 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++ .||. = ..+++..-.|. ..|.+.|||.| |++.+.|.+
T Consensus 18 ~~~te~~L~~~F~-~~G~-i-~~~~~~~~~~~-~~g~~~G~aFV~f~~~~~a~~ 67 (114)
T 2dnl_A 18 PDIDEDEITASFR-RFGP-L-VVDWPHKAESK-SYFPPKGYAFLLFQEESSVQA 67 (114)
T ss_dssp TTCCHHHHHHHTT-TTCC-C-CEECTTSSSSC-CCSCTTSEEEECCSSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-E-EEEEeecCCCC-CCCCcccEEEEEECCHHHHHH
Confidence 4577888888774 4554 1 23333222221 12678889988 888887654
No 127
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.19 E-value=42 Score=21.98 Aligned_cols=48 Identities=17% Similarity=0.315 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHhc
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKKF 88 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk~ 88 (135)
...+.+||++.++. ++.-+.++.++.+- .+.+.|||.| |.+.+.|.+.
T Consensus 25 ~~~t~~~l~~~F~~-~g~v~~~v~i~~d~-----~g~~~G~afV~F~~~~~a~~A 73 (114)
T 2cpy_A 25 FSITKMDVLQFLEG-IPVDENAVHVLVDN-----NGQGLGQALVQFKNEDDARKS 73 (114)
T ss_dssp TTSCHHHHHHHTTT-SCCCSTTEEECCCT-----TSSCSSCEEEECSSHHHHHHH
T ss_pred CcCCHHHHHHHHHh-CCCcCCeEEEEECC-----CCCcceEEEEEECCHHHHHHH
Confidence 56788899888854 56612445544432 4567788876 6677766553
No 128
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=30.01 E-value=98 Score=19.64 Aligned_cols=20 Identities=40% Similarity=0.674 Sum_probs=14.3
Q ss_pred CCCEEEEEEEe-eCCHHHHHh
Q 032727 68 GGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 68 G~~~s~g~a~I-Yds~e~~kk 87 (135)
..|.+.|||.| |.+.+.|.+
T Consensus 49 ~tg~~kG~afV~f~~~~~A~~ 69 (100)
T 3ns6_A 49 ATGKTKGFLFVECGSMNDAKK 69 (100)
T ss_dssp TTTEECSEEEEEESSHHHHHH
T ss_pred CCCccceEEEEEECCHHHHHH
Confidence 44788899987 777666543
No 129
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.93 E-value=38 Score=20.88 Aligned_cols=43 Identities=14% Similarity=0.257 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHhc
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKKF 88 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk~ 88 (135)
...+.++|++.+ ..||. =.++.++.. +.|||.| |+|.+.|...
T Consensus 15 ~~~te~~l~~~F-~~~G~-i~~v~i~~~---------~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 15 GDMTEDELREFF-SQYGD-VMDVFIPKP---------FRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp SSSCHHHHHHHS-TTTSC-CCEEECCSS---------CCSCCEEECSCHHHHHHT
T ss_pred CCCCHHHHHHHH-HHcCC-eeEEEEecC---------CCCEEEEEECCHHHHHHH
Confidence 456788888877 45554 233333321 6788877 8899988753
No 130
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10
Probab=29.58 E-value=62 Score=24.25 Aligned_cols=33 Identities=12% Similarity=0.138 Sum_probs=24.4
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEec
Q 032727 26 VIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFK 62 (135)
Q Consensus 26 ~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~ 62 (135)
.++|.++| .++...-..|++.+++ +++.++++|
T Consensus 207 ~lei~~~~---~~K~~~~~~~~~~~~~-~~~~~~~~G 239 (288)
T 1nrw_A 207 NFELSSRK---ASKGQALKRLAKQLNI-PLEETAAVG 239 (288)
T ss_dssp EEEEEETT---CSHHHHHHHHHHHTTC-CGGGEEEEE
T ss_pred cEEEecCC---CChHHHHHHHHHHhCC-CHHHEEEEc
Confidence 35666654 6788889999999999 766666554
No 131
>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10
Probab=29.57 E-value=64 Score=23.94 Aligned_cols=32 Identities=19% Similarity=0.273 Sum_probs=24.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEec
Q 032727 27 IDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFK 62 (135)
Q Consensus 27 ~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~ 62 (135)
++|.++| .++...-..|++.++. +++.++++|
T Consensus 182 ~ei~~~~---~~K~~~~~~~~~~~~~-~~~~~~~~G 213 (268)
T 1nf2_A 182 LEIVPKN---VDKGKALRFLRERMNW-KKEEIVVFG 213 (268)
T ss_dssp EEEECTT---CCHHHHHHHHHHHHTC-CGGGEEEEE
T ss_pred EEEeCCC---CChHHHHHHHHHHcCC-CHHHeEEEc
Confidence 5666654 6788999999999999 766666554
No 132
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=29.30 E-value=46 Score=19.40 Aligned_cols=33 Identities=18% Similarity=0.110 Sum_probs=19.2
Q ss_pred EEEEcCCCCCCC-H----HHHHHHHHhHhCCCCCCeEEE
Q 032727 27 IDVLHPGRANVS-K----AELKEKLARMYEVKDPNAIFV 60 (135)
Q Consensus 27 ~~v~H~g~~Tps-r----~eIk~kLA~~~~~~~~~~IvV 60 (135)
+.|...++-|+. + .+|-+.|++.+|. +++.|+|
T Consensus 4 i~i~~~~g~s~eqk~~l~~~lt~~l~~~lg~-~~~~v~V 41 (64)
T 3abf_A 4 LKVTLLEGRPPEKKRELVRRLTEMASRLLGE-PYEEVRV 41 (64)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHHHHHHHTTC-CGGGEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHhCC-CcccEEE
Confidence 344443344554 2 2566677788899 6665554
No 133
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.15 E-value=26 Score=22.21 Aligned_cols=40 Identities=10% Similarity=0.263 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 36 NVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 36 Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
..+.+||++.+ ..|+. -..|.| +.+.|||.| |++.+.|.+
T Consensus 24 ~~t~~~l~~~F-~~~G~--i~~v~i---------~~~~g~afV~f~~~~~a~~ 64 (97)
T 1x5p_A 24 DMTPTLLRGAF-SPFGN--IIDLSM---------DPPRNCAFVTYEKMESADQ 64 (97)
T ss_dssp SCCHHHHHHHH-TTTSC--EEEEEE---------ETTTTEEEEEESSHHHHHH
T ss_pred CCCHHHHHHHH-hhCCC--EEEEEe---------cCCCCEEEEEECCHHHHHH
Confidence 67788888877 45554 222333 134556665 666665544
No 134
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=28.98 E-value=83 Score=19.69 Aligned_cols=41 Identities=20% Similarity=0.196 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++ .||. =.++-++ .+.|||.| |+|.+.+..
T Consensus 37 ~~~~~~~l~~~f~-~~G~-i~~~~~~----------~~~g~afV~f~~~~~A~~ 78 (101)
T 2la4_A 37 HFATEADLIPLFQ-NFGF-ILDFKHY----------PEKGCCFIKYDTHEQAAV 78 (101)
T ss_dssp TTCCHHHHHHHHH-TTSC-CSEEEEE----------TTTTEEEEECSSHHHHHH
T ss_pred cccCHHHHHHHHH-hCCC-EEEEEEe----------cCCCEEEEEECCHHHHHH
Confidence 4567888888774 4554 1233222 24567766 667766543
No 135
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=28.68 E-value=1.2e+02 Score=20.70 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=17.8
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCe
Q 032727 35 ANVSKAELKEKLARMYEVKDPNA 57 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~ 57 (135)
++-+-.+|+++|+...|+ +++.
T Consensus 26 ~~~TV~~lK~ki~~~~Gi-p~~~ 47 (122)
T 1t0y_A 26 AGMSLNDLKKKLELVVGT-TVDS 47 (122)
T ss_dssp TTSBHHHHHHHHHHHHCC-CTTT
T ss_pred CCCcHHHHHHHHHHHhCC-CHHH
Confidence 456779999999999999 5544
No 136
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=28.55 E-value=50 Score=24.94 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEe
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVF 61 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~ 61 (135)
+.+.-.++++.||+.+++ +++.|++.
T Consensus 59 ~~~~~~~l~~~la~~~~~-~~~~i~~~ 84 (361)
T 3ftb_A 59 PDVNYRRLNKSIENYLKL-KDIGIVLG 84 (361)
T ss_dssp CCTTCHHHHHHHHHHHTC-CSCEEEEE
T ss_pred CCccHHHHHHHHHHHhCC-CcceEEEc
Confidence 345568999999999999 88877764
No 137
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0
Probab=28.31 E-value=40 Score=23.27 Aligned_cols=65 Identities=17% Similarity=0.117 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEeeCCHHHHHhcCCcchhhhcCCccc
Q 032727 37 VSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTK 102 (135)
Q Consensus 37 psr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~kk~Epk~~l~Rn~~~e~ 102 (135)
-++.++-..+++.++++..++++|.+=.+-.-.....|..-++.+.+.++ -.+.|++.-|.+.+-
T Consensus 141 k~k~~~~~~~~~~~g~~~~~~i~vGDs~~Di~~a~~aG~~~~~~~~~~l~-~~ad~v~~~~dl~~~ 205 (217)
T 3m1y_A 141 HSKGEMLLVLQRLLNISKTNTLVVGDGANDLSMFKHAHIKIAFNAKEVLK-QHATHCINEPDLALI 205 (217)
T ss_dssp THHHHHHHHHHHHHTCCSTTEEEEECSGGGHHHHTTCSEEEEESCCHHHH-TTCSEEECSSBGGGG
T ss_pred CChHHHHHHHHHHcCCCHhHEEEEeCCHHHHHHHHHCCCeEEECccHHHH-HhcceeecccCHHHH
Confidence 34568888889999994455666655434333334445555565556565 458898888776653
No 138
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=28.25 E-value=1.1e+02 Score=21.32 Aligned_cols=40 Identities=20% Similarity=0.322 Sum_probs=32.7
Q ss_pred eEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceee
Q 032727 23 KQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRT 65 (135)
Q Consensus 23 kEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T 65 (135)
|-+++||+-| --|+--|+...||+.-++ +.=+|.|..+.-
T Consensus 7 rRlVLDVlKP--h~p~i~d~A~~l~~~~gV-~gVnItv~EvD~ 46 (97)
T 2raq_A 7 IRIVLDILKP--HEPIIPEYAKYLSELRGV-EGVNITLMEIDK 46 (97)
T ss_dssp EEEEEEEECC--SCSCHHHHHHHHHHSTTC-CEEEEEEEEECS
T ss_pred eEEEEEecCC--CCCCHHHHHHHHHhCCCc-ceEEEEEEEeec
Confidence 3489999977 569999999999999999 766777766543
No 139
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0
Probab=28.20 E-value=69 Score=23.49 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHhHhCCCCCCeEEEec
Q 032727 37 VSKAELKEKLARMYEVKDPNAIFVFK 62 (135)
Q Consensus 37 psr~eIk~kLA~~~~~~~~~~IvV~~ 62 (135)
.++...-..|++.||+ +++.++++|
T Consensus 196 ~~K~~~l~~l~~~lgi-~~~~~i~~G 220 (279)
T 3mpo_A 196 ASKGGTLSELVDQLGL-TADDVMTLG 220 (279)
T ss_dssp CCHHHHHHHHHHHTTC-CGGGEEEC-
T ss_pred CChHHHHHHHHHHcCC-CHHHEEEEC
Confidence 5799999999999999 777777664
No 140
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=28.17 E-value=72 Score=23.38 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHhHhCCCCCCeEEEec
Q 032727 37 VSKAELKEKLARMYEVKDPNAIFVFK 62 (135)
Q Consensus 37 psr~eIk~kLA~~~~~~~~~~IvV~~ 62 (135)
.++.+.-..|++.||+ +++.++++|
T Consensus 196 ~~K~~~l~~l~~~lgi-~~~~~i~~G 220 (279)
T 4dw8_A 196 IDKALSLSVLLENIGM-TREEVIAIG 220 (279)
T ss_dssp CCHHHHHHHHHHHHTC-CGGGEEEEE
T ss_pred CChHHHHHHHHHHcCC-CHHHEEEEC
Confidence 5789999999999999 776666654
No 141
>1iv3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, non-mevalonate, riken structural genomics/proteomics initiative, RSGI; 1.52A {Thermus thermophilus} SCOP: d.79.5.1 PDB: 1iv2_A 1iv4_A* 1iv1_A
Probab=28.08 E-value=50 Score=24.66 Aligned_cols=34 Identities=15% Similarity=0.261 Sum_probs=27.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEec
Q 032727 27 IDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFK 62 (135)
Q Consensus 27 ~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~ 62 (135)
+...-| +=.|-+.++++.||+.+++ +++.|-|.-
T Consensus 98 ii~q~P-Ki~p~~~~m~~~ia~~L~~-~~~~V~vKA 131 (152)
T 1iv3_A 98 LTLDRP-KLGPHRKALVDSLSRLMRL-PQDRIGLTF 131 (152)
T ss_dssp EECSSS-CCGGGHHHHHHHHHHHHTC-CGGGEEEEE
T ss_pred EEecCC-cCHHHHHHHHHHHHHHhCC-CCceEEEEE
Confidence 333344 5689999999999999999 999988864
No 142
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=27.98 E-value=1.5e+02 Score=20.50 Aligned_cols=47 Identities=23% Similarity=0.367 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+..+|++.+ ..||. |.-..|...-..|.+.|||.| |.+.+.|..
T Consensus 82 ~~~t~~~L~~~F-~~~G~-----i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~ 129 (165)
T 1rk8_A 82 EEAQEDEIQEKF-CDYGE-----IKNIHLNLDRRTGFSKGYALVEYETHKQALA 129 (165)
T ss_dssp TTCCHHHHHHHH-GGGSC-----EEEEEEEECTTTSSEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHh-hcCCC-----EEEEEEEecCCCCcEeeEEEEEECCHHHHHH
Confidence 456788888888 45554 222223333345678888887 777776654
No 143
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=27.83 E-value=34 Score=25.63 Aligned_cols=26 Identities=12% Similarity=0.247 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEe
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVF 61 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~ 61 (135)
+.|.-.++++.||+.+++ +++.|++.
T Consensus 49 ~~~~~~~lr~~la~~~~~-~~~~i~~t 74 (337)
T 3p1t_A 49 PFDAEPRVMRKLAEHFSC-PEDNLMLV 74 (337)
T ss_dssp CTTHHHHHHHHHHHHHTS-CGGGEEEE
T ss_pred CCCchHHHHHHHHHHhCc-CHHHEEEe
Confidence 456678999999999999 77666654
No 144
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=27.47 E-value=44 Score=22.55 Aligned_cols=40 Identities=10% Similarity=0.226 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 36 NVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 36 Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
..+.++|++.+ ..||. =.++.++ .+.|||.| |++.+.|..
T Consensus 48 ~~te~~L~~~F-~~~G~-I~~v~i~----------~~kg~aFV~f~~~~~A~~ 88 (121)
T 2bz2_A 48 DMTPTLLRGAF-SPFGN-IIDLSMD----------PPRNCAFVTYEKMESADQ 88 (121)
T ss_dssp SCCHHHHHHHH-STTCC-CSCEEEE----------TTTTEEEEECSSHHHHHH
T ss_pred CCCHHHHHHHH-HccCC-EEEEEEe----------CCCCEEEEEECCHHHHHH
Confidence 46788888877 45664 2333332 34567766 777765543
No 145
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=27.28 E-value=39 Score=25.67 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHhHhCCCCCCeEEEec
Q 032727 37 VSKAELKEKLARMYEVKDPNAIFVFK 62 (135)
Q Consensus 37 psr~eIk~kLA~~~~~~~~~~IvV~~ 62 (135)
|.-.++++.||+.+++ +++.|++.+
T Consensus 50 ~~~~~lr~~la~~~~~-~~~~i~~t~ 74 (350)
T 3fkd_A 50 PDAGTLRQMLAKRNSV-DNNAILVTN 74 (350)
T ss_dssp TTCHHHHHHHHHHTTC-CGGGEEEES
T ss_pred CcHHHHHHHHHHHhCc-CHHHEEEcC
Confidence 4447999999999999 877777643
No 146
>1t0a_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synth; mixed alpha beta, homotrimer, synthase, lyase; HET: FPP; 1.60A {Shewanella oneidensis} SCOP: d.79.5.1 PDB: 1vh8_A* 1vha_A* 1jn1_A 3fpi_A* 3f6m_A*
Probab=27.26 E-value=53 Score=24.68 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=27.1
Q ss_pred EEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEece
Q 032727 29 VLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKF 63 (135)
Q Consensus 29 v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~ 63 (135)
..-| +=.|-+.++++.||+.+++ +++.|-|.-=
T Consensus 102 ~q~P-Ki~p~~~~m~~~ia~~L~~-~~~~V~vKAt 134 (159)
T 1t0a_A 102 AQAP-KMAPHIEDMRQVLAADLNA-DVADINVKAT 134 (159)
T ss_dssp CSSS-CCGGGHHHHHHHHHHHTTC-CGGGEEEEEE
T ss_pred cCCC-cChHHHHHHHHHHHHHhCC-CCceEEEEEe
Confidence 3344 5689999999999999999 9999988643
No 147
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=27.23 E-value=1.6e+02 Score=20.49 Aligned_cols=47 Identities=19% Similarity=0.446 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.+||++.+ ..||. =.++.++ ..--.+.+.|||.| |+|.+.|.+
T Consensus 135 ~~~t~~~l~~~f-~~~G~-v~~v~i~----~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 135 QDLSDDDIKSVF-EAFGK-IKSATLA----RDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp TTCCHHHHHHHH-TTSSC-EEEEEEE----ECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CcCCHHHHHHHH-hccCC-eeEEEEE----ecCCCCCcCceEEEEecCHHHHHH
Confidence 456778888777 34553 1222222 22235677888877 677766543
No 148
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=27.08 E-value=1e+02 Score=18.27 Aligned_cols=47 Identities=19% Similarity=0.426 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+..+|++.+ ..+|. =.+. .+......+.+.|||.| |.|.+.|..
T Consensus 11 ~~~t~~~l~~~f-~~~G~-i~~~----~i~~~~~~~~~~g~afV~f~~~~~a~~ 58 (83)
T 3md1_A 11 VNVDDETLRNAF-KDFPS-YLSG----HVMWDMQTGSSRGYGFVSFTSQDDAQN 58 (83)
T ss_dssp TTCCHHHHHHHH-TTSTT-EEEE----EEEECTTTCCEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHH-HhcCC-eeEE----EEEEcCCCCCccceEEEEECCHHHHHH
Confidence 456778888877 44554 1222 22333345678888876 777777654
No 149
>1gx1_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, lyase, isoprene biosynthesis; HET: CDP; 1.8A {Escherichia coli} SCOP: d.79.5.1 PDB: 1h47_A* 1h48_A* 3ern_A* 3eor_A* 3elc_A* 3esj_A* 3fba_A* 2amt_A* 1knj_A* 1knk_A 1u3l_A* 1u3p_A 1u40_A* 1u43_A* 1jy8_A* 2gzl_A* 1yqn_A* 3ghz_A* 3t80_A*
Probab=27.01 E-value=54 Score=24.67 Aligned_cols=33 Identities=9% Similarity=0.020 Sum_probs=27.2
Q ss_pred EEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEece
Q 032727 29 VLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKF 63 (135)
Q Consensus 29 v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~ 63 (135)
..-| +=.|-+.++++.||+.+++ +++.|-|.-=
T Consensus 101 ~q~P-Ki~p~~~~m~~~ia~~L~~-~~~~V~vKAt 133 (160)
T 1gx1_A 101 AQAP-KMLPHIPQMRVFIAEDLGC-HMDDVNVKAT 133 (160)
T ss_dssp CSSS-CCGGGHHHHHHHHHHHTTC-CGGGEEEEEE
T ss_pred cCCC-cchHHHHHHHHHHHHHhCC-CCceEEEEEc
Confidence 3344 5689999999999999999 9999988643
No 150
>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A
Probab=26.72 E-value=76 Score=23.51 Aligned_cols=25 Identities=16% Similarity=0.383 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHhHhCCCCCCeEEEec
Q 032727 37 VSKAELKEKLARMYEVKDPNAIFVFK 62 (135)
Q Consensus 37 psr~eIk~kLA~~~~~~~~~~IvV~~ 62 (135)
.++.+.-..|++.+++ +++.++++|
T Consensus 190 ~~K~~~~~~l~~~l~i-~~~~~~~~G 214 (271)
T 1rlm_A 190 LHKANGISRLLKRWDL-SPQNVVAIG 214 (271)
T ss_dssp CSHHHHHHHHHHHHTC-CGGGEEEEE
T ss_pred CChHHHHHHHHHHhCC-CHHHEEEEC
Confidence 5788899999999999 666555543
No 151
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=26.58 E-value=1.1e+02 Score=20.68 Aligned_cols=39 Identities=21% Similarity=0.441 Sum_probs=28.4
Q ss_pred eeeccCccc-eEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCe
Q 032727 14 FMTNRLLSR-KQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNA 57 (135)
Q Consensus 14 ~~~N~LL~R-kEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~ 57 (135)
+....|+.. .+++|.|.- ..++.||++.+-++|++ +..-
T Consensus 18 EKa~~~~e~~n~~~F~V~~----~AnK~eIK~AVE~lf~V-kV~~ 57 (93)
T 3r8s_T 18 EKASTAMEKSNTIVLKVAK----DATKAEIKAAVQKLFEV-EVEV 57 (93)
T ss_dssp HHHHHHHHTTSEEEEEECS----SCCHHHHHHHHHHHSCC-CCCE
T ss_pred HHHHHHHHhCCEEEEEECC----CCCHHHHHHHHHHHcCC-ceEE
Confidence 334445555 678888754 36799999999999999 5443
No 152
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=26.58 E-value=99 Score=19.75 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=22.4
Q ss_pred CHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHH
Q 032727 38 SKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAK 86 (135)
Q Consensus 38 sr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 86 (135)
+..+|++.+ ..||. ...|.|. . ..|.+.|||.| |.|.+.|.
T Consensus 34 t~~~l~~~F-~~~G~--v~~v~i~---~--~~g~~~G~afV~f~~~~~A~ 75 (105)
T 2nlw_A 34 LKNVIHKIF-SKFGK--ITNDFYP---E--EDGKTKGYIFLEYASPAHAV 75 (105)
T ss_dssp HHHHHHHHH-GGGSC--EEEEECC---C--BTTBSCCEEEEEECSSSHHH
T ss_pred HHHHHHHHH-hcCCC--EEEEEee---C--CCCCeeeEEEEEECCHHHHH
Confidence 356777766 44564 1222222 1 34577788877 66665443
No 153
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=26.46 E-value=77 Score=23.63 Aligned_cols=32 Identities=28% Similarity=0.407 Sum_probs=22.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEec
Q 032727 27 IDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFK 62 (135)
Q Consensus 27 ~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~ 62 (135)
++|.++| .++...-+.|++.||+ +++.++.+|
T Consensus 201 ~ei~~~~---~~K~~al~~l~~~lgi-~~~~~ia~G 232 (285)
T 3pgv_A 201 LEVMAGG---VSKGHALEAVAKMLGY-TLSDCIAFG 232 (285)
T ss_dssp EEEEETT---CSHHHHHHHHHHHTTC-CGGGEEEEE
T ss_pred EEEecCC---CChHHHHHHHHHHhCC-CHHHEEEEC
Confidence 3444443 5788888999999999 776666654
No 154
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=26.32 E-value=79 Score=23.59 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHhHhCCCCCCeEEEec
Q 032727 37 VSKAELKEKLARMYEVKDPNAIFVFK 62 (135)
Q Consensus 37 psr~eIk~kLA~~~~~~~~~~IvV~~ 62 (135)
.++...-+.|++.||+ +++.++++|
T Consensus 210 ~~K~~~l~~l~~~lgi-~~~e~ia~G 234 (283)
T 3dao_A 210 VSKWTALSYLIDRFDL-LPDEVCCFG 234 (283)
T ss_dssp CCHHHHHHHHHHHTTC-CGGGEEEEE
T ss_pred CcHHHHHHHHHHHhCC-CHHHEEEEC
Confidence 5789999999999999 777666654
No 155
>2pmp_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; plant enzymes, MEP pathway, isoprenoid proteins, CMP, zinc IONS, lyase; HET: C5P; 2.30A {Arabidopsis thaliana}
Probab=26.13 E-value=56 Score=24.57 Aligned_cols=32 Identities=16% Similarity=0.419 Sum_probs=26.6
Q ss_pred EEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEec
Q 032727 29 VLHPGRANVSKAELKEKLARMYEVKDPNAIFVFK 62 (135)
Q Consensus 29 v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~ 62 (135)
..-| +=.|-+.++++.||+.+++ +++.|-|.-
T Consensus 103 ~q~P-Ki~p~~~~m~~~ia~~L~~-~~~~V~vKA 134 (160)
T 2pmp_A 103 LQRP-KISPHKETIRSNLSKLLGA-DPSVVNLKA 134 (160)
T ss_dssp CSSS-CCGGGHHHHHHHHHHHHTC-CGGGEEEEE
T ss_pred ecCC-cCHHHHHHHHHHHHHHHCC-CcceEEEEE
Confidence 3345 5679999999999999999 999988864
No 156
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=26.01 E-value=1.5e+02 Score=19.79 Aligned_cols=47 Identities=15% Similarity=0.228 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++ .||. =.++.+ ...-..|.+.|||.| |+|.+.|.+
T Consensus 104 ~~~t~~~l~~~f~-~~G~-v~~v~i----~~~~~~g~~~g~afV~f~~~~~A~~ 151 (172)
T 2g4b_A 104 NYLNDDQVKELLT-SFGP-LKAFNL----VKDSATGLSKGYAFCEYVDINVTDQ 151 (172)
T ss_dssp TTCCHHHHHHHHH-TTSC-EEEEEE----EECTTTCSEEEEEEEEESSTTHHHH
T ss_pred CcCCHHHHHHHHH-hcCC-ceEEEE----EecCCCCCcceEEEEEeCCHHHHHH
Confidence 3567889988885 4554 122222 223235667788876 666665543
No 157
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.99 E-value=1.3e+02 Score=21.40 Aligned_cols=27 Identities=7% Similarity=0.170 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEe
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVF 61 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~ 61 (135)
+.-+-.|+++.||..++++...+.++|
T Consensus 35 ~d~TV~dLKe~ls~~~~iP~e~qrLIy 61 (118)
T 2daf_A 35 VDTILKYLKDHFSHLLGIPHSVLQIRY 61 (118)
T ss_dssp SSSCSHHHHHHHHHHHTCCTTTEEEEE
T ss_pred CCCcHHHHHHHHHhhhCCChHHEEEEE
Confidence 556789999999999999444444444
No 158
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=25.72 E-value=1.1e+02 Score=18.20 Aligned_cols=47 Identities=15% Similarity=0.309 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+..+|++.++ .||. =.+. .+......+.+.|||.| |+|.+.|.+
T Consensus 17 ~~~~~~~l~~~f~-~~G~-i~~v----~i~~~~~~~~~~g~afV~f~~~~~a~~ 64 (85)
T 3mdf_A 17 EEVDDKVLHAAFI-PFGD-ITDI----QIPLDYETEKHRGFAFVEFELAEDAAA 64 (85)
T ss_dssp TTCCHHHHHHHHG-GGSC-EEEE----ECCEETTTTEECSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHh-ccCC-EEEE----EEEECCCCCccccEEEEEECCHHHHHH
Confidence 4567888888874 4554 1121 22233345678888875 777777654
No 159
>2okr_C MAP kinase-activated protein kinase 2; NLS, NES, heterodimer, docking groove, transferase; 2.00A {Homo sapiens}
Probab=25.64 E-value=2.7 Score=22.85 Aligned_cols=15 Identities=20% Similarity=0.332 Sum_probs=10.4
Q ss_pred EEeeeeeeccCccce
Q 032727 9 LRTRKFMTNRLLSRK 23 (135)
Q Consensus 9 i~~~k~~~N~LL~Rk 23 (135)
|+....-.||||++|
T Consensus 3 iK~L~~snNpLL~kR 17 (26)
T 2okr_C 3 IKKIEDASNPLLLKR 17 (26)
T ss_dssp CCCTTTCCCHHHHHH
T ss_pred ccccccccCHHHHHH
Confidence 444566789999865
No 160
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=25.48 E-value=1.5e+02 Score=19.63 Aligned_cols=47 Identities=15% Similarity=0.292 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++ .||. =.+. .+...--.+.+.|||.| |+|.+.|.+
T Consensus 99 ~~~t~~~l~~~f~-~~G~-i~~~----~i~~~~~~~~~~g~afV~f~~~~~A~~ 146 (168)
T 1b7f_A 99 RTITDDQLDTIFG-KYGS-IVQK----NILRDKLTGRPRGVAFVRYNKREEAQE 146 (168)
T ss_dssp TTCCHHHHHHHHT-SSSC-EEEE----EEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHhhh-cCCc-EEEE----EEEEcCCCCCcceEEEEEECCHHHHHH
Confidence 4567778887773 4443 1122 22222235667888887 778777654
No 161
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=25.37 E-value=1.4e+02 Score=19.30 Aligned_cols=48 Identities=8% Similarity=0.151 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHhc
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKKF 88 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk~ 88 (135)
...+.+||++-++ .||. =.++.++ ..-..+.+.|||.| |.|.+.+...
T Consensus 46 ~~~t~~~l~~~F~-~~G~-i~~v~i~----~~~~~~~~~g~afV~f~~~~~a~~A 94 (124)
T 2jwn_A 46 YGSTAQDLEAHFS-SCGS-INRITIL----CDKFSGHPKGYAYIEFAERNSVDAA 94 (124)
T ss_dssp TTCCHHHHHHHHH-TTSC-EEEEEEE----EECTTSSCEEEEEEEESSHHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-EEEEEEE----ecCCCCCcccEEEEEECCHHHHHHH
Confidence 3467889988885 4553 1222222 22345667788876 7777766543
No 162
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=25.28 E-value=1.5e+02 Score=19.50 Aligned_cols=47 Identities=21% Similarity=0.351 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.+||++.++ .+|. =.+..++ ..-..|.+.|||.| |.+.+.|..
T Consensus 12 ~~~~~~~l~~~f~-~~G~-i~~v~~~----~~~~~~~~~g~afV~f~~~~~A~~ 59 (167)
T 1fxl_A 12 QNMTQEEFRSLFG-SIGE-IESCKLV----RDKITGQSLGYGFVNYIDPKDAEK 59 (167)
T ss_dssp TTCCHHHHHHHHH-TTSC-EEEEEEE----ECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEEEE----eCCCCCcceeEEEEEECCHHHHHH
Confidence 4567889988885 4553 1222222 23335678888887 777777654
No 163
>3re3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; structural genomics, center for structural genomics of infec diseases, csgid; 2.65A {Francisella tularensis subsp} SCOP: d.79.5.0
Probab=25.26 E-value=58 Score=24.53 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=26.8
Q ss_pred EEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEece
Q 032727 29 VLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKF 63 (135)
Q Consensus 29 v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~ 63 (135)
...| +=.|-+.++++.||+.+++ +++.|-|.-=
T Consensus 106 ~q~P-Kl~p~~~~m~~~la~~L~~-~~~~V~vKAt 138 (162)
T 3re3_A 106 AQAP-KMLPHIEKMRACLANILEI-QISQINIKAT 138 (162)
T ss_dssp CSSS-CCGGGHHHHHHHHHHHHTS-CGGGEEEEEE
T ss_pred cCCC-cchhHHHHHHHHHHHHHCC-CCceEEEEEe
Confidence 3344 5678899999999999999 8899988643
No 164
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=25.19 E-value=45 Score=19.04 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=19.0
Q ss_pred EEEcCCCCCCC-HH----HHHHHHHhHhCCCCCCeEEE
Q 032727 28 DVLHPGRANVS-KA----ELKEKLARMYEVKDPNAIFV 60 (135)
Q Consensus 28 ~v~H~g~~Tps-r~----eIk~kLA~~~~~~~~~~IvV 60 (135)
.|...++.|+. +. +|-+.|++.++. +++.++|
T Consensus 7 ~i~~~~g~s~e~k~~l~~~l~~~l~~~lg~-p~~~v~v 43 (63)
T 2x4k_A 7 NVKLLEGRSDEQLKNLVSEVTDAVEKTTGA-NRQAIHV 43 (63)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHHHHHHCC-CGGGCEE
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHHHHHhCc-CcccEEE
Confidence 44444444554 32 556677778899 6665555
No 165
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.87 E-value=1.2e+02 Score=19.23 Aligned_cols=41 Identities=7% Similarity=0.259 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+..+|++.++ .||. =.++.++.+ .|||.| |++.+.|..
T Consensus 35 ~~~t~~~l~~~F~-~~G~-i~~v~i~~~----------~g~afV~f~~~~~a~~ 76 (109)
T 1x4g_A 35 SGLTDQLMRQTFS-PFGQ-IMEIRVFPE----------KGYSFVRFSTHESAAH 76 (109)
T ss_dssp SCCCHHHHHHHHH-HHSC-EEEEEEETT----------TTEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEEEeCC----------CCEEEEEECCHHHHHH
Confidence 4678889998885 4664 223333332 466666 777776543
No 166
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=24.46 E-value=46 Score=25.44 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEec
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFK 62 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~ 62 (135)
+.|.-.++++.||+.+++ +++.|++.+
T Consensus 63 ~~~~~~~lr~~la~~~g~-~~~~i~~t~ 89 (360)
T 3hdo_A 63 PSASSQKLREVAGELYGF-DPSWIIMAN 89 (360)
T ss_dssp CCSSCHHHHHHHHHHHTC-CGGGEEEES
T ss_pred CCCchHHHHHHHHHHhCc-CcceEEEcC
Confidence 344558999999999998 777777643
No 167
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=24.33 E-value=64 Score=20.80 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHH
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAK 86 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 86 (135)
...+..+|++.++ .||. =.++.++.+ |.. .|||.| |.|.+.|.
T Consensus 18 ~~~t~~~l~~~F~-~~G~-v~~v~i~~~-----~~~--~g~afV~f~~~~~A~ 61 (115)
T 3lqv_A 18 YKITAEEMYDIFG-KYGP-IRQIRVGNT-----PET--RGTAYVVYEDIFDAK 61 (115)
T ss_dssp TTCCHHHHHHHHH-TTSC-EEEEEEECS-----TTT--TTCEEEEESSHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEEEeeC-----CCC--CcEEEEEECCHHHHH
Confidence 5678889998885 4554 233333321 333 555555 56665544
No 168
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=24.15 E-value=45 Score=25.68 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHhHhCCCCCCeEEEe
Q 032727 36 NVSKAELKEKLARMYEVKDPNAIFVF 61 (135)
Q Consensus 36 Tpsr~eIk~kLA~~~~~~~~~~IvV~ 61 (135)
.|.-.++++.||+.+++ +++.|++.
T Consensus 57 ~~~~~~lr~~la~~~~~-~~~~v~~~ 81 (356)
T 1fg7_A 57 ECQPKAVIENYAQYAGV-KPEQVLVS 81 (356)
T ss_dssp CSSCHHHHHHHHHHHTS-CGGGEEEE
T ss_pred CccHHHHHHHHHHHhCC-ChHHEEEc
Confidence 34567999999999999 77776654
No 169
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.97 E-value=1.6e+02 Score=19.54 Aligned_cols=62 Identities=18% Similarity=0.306 Sum_probs=41.4
Q ss_pred ccCccc-eEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe---eCCHHHHHh
Q 032727 17 NRLLSR-KQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI---YDSVENAKK 87 (135)
Q Consensus 17 N~LL~R-kEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I---Yds~e~~kk 87 (135)
..|+.. .+++|.|.- ..++.||++.+-++|++ ++.-|..+.+. .|.=.+|+.. |+.+|.|.+
T Consensus 17 ~~~~e~~n~~~F~Vd~----~AnK~qIK~AVe~lf~V---kV~~VNTl~~~--~~~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 17 ISLIEKENKLTFIVDR----RATKQDIKRAVEEIFNV---KVEKVNTLITP--RGEKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp HHHHHTSCEEEEEECT----TCCHHHHHHHHHHHTTC---CEEEEEEEECT--TSCEEEEEEECTTSCHHHHHHH
T ss_pred HHHHHhCCEEEEEEcC----CCCHHHHHHHHHHHcCC---CceEEEEeEcC--CCceEEEEEcCCCCcHHHHHHh
Confidence 344443 678888754 36799999999999999 66666777665 3445556665 444554443
No 170
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=23.95 E-value=1.8e+02 Score=19.91 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHH
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAK 86 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 86 (135)
...+..+|++.++. ||. =.++.+ ...-..+.+.|||.| |+|.+.+.
T Consensus 124 ~~~~~~~l~~~f~~-~G~-v~~~~~----~~~~~~~~~~g~afV~f~~~~~a~ 170 (198)
T 2yh0_A 124 NYLNDDQVKELLTS-FGP-LKAFNL----VKDSATGLSKGYAFCEYVDINVTD 170 (198)
T ss_dssp TTCCHHHHHHHHHT-BSC-EEEEEE----EECTTTCSEEEEEEEEESSSSHHH
T ss_pred CCCCHHHHHHHHHH-cCC-ccEEEE----eecCCCCCcceEEEEEECCHHHHH
Confidence 35678888888854 554 122222 222235667788876 66655554
No 171
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.87 E-value=95 Score=18.60 Aligned_cols=41 Identities=10% Similarity=0.214 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++ .||. =.++.++. +.|||.| |+|.+.|..
T Consensus 22 ~~~t~~~l~~~f~-~~G~-i~~~~~~~----------~kg~afV~f~~~~~A~~ 63 (85)
T 2ytc_A 22 DTITETDLRNHFY-QFGE-IRTITVVQ----------RQQCAFIQFATRQAAEV 63 (85)
T ss_dssp TTSCHHHHHHHHH-TTSC-EEEEEEEG----------GGTEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hCCC-EeEEEEEC----------CCCEEEEEECCHHHHHH
Confidence 4578889988885 4554 12333332 2467766 677776644
No 172
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=23.84 E-value=57 Score=21.45 Aligned_cols=39 Identities=18% Similarity=0.112 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHH
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAK 86 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 86 (135)
...+.+||++.++ .++. =.++.++.+ |||.| |++.+.|.
T Consensus 26 ~~~t~~~l~~~F~-~~G~-v~~~~i~~~-----------g~afV~f~~~~~a~ 65 (115)
T 3beg_B 26 PSGSWQDLKDHMR-EAGD-VCYADVYRD-----------GTGVVEFVRKEDMT 65 (115)
T ss_dssp SSCCTTHHHHHHG-GGSC-EEEEEECTT-----------SEEEEEESSHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEEEecC-----------CEEEEEECCHHHHH
Confidence 4567788988774 4553 122222222 67766 66666554
No 173
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=23.84 E-value=1.5e+02 Score=19.42 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=23.8
Q ss_pred EEEEEEcCCCCCCCHH-----HHHHHHHhHhCCCCCCeEEE
Q 032727 25 FVIDVLHPGRANVSKA-----ELKEKLARMYEVKDPNAIFV 60 (135)
Q Consensus 25 i~~~v~H~g~~Tpsr~-----eIk~kLA~~~~~~~~~~IvV 60 (135)
+.+.|.-.|+-||..+ +|-+.|++.+|+ +++.|+|
T Consensus 58 ~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi-~~~~v~I 97 (112)
T 3b64_A 58 ACVRVEALGGYGPSEPEKVTSIVTAAITKECGI-VADRIFV 97 (112)
T ss_dssp EEEEEECTTCCCTTHHHHHHHHHHHHHHHHHCC-CGGGEEE
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCc-CcceEEE
Confidence 4556665555667643 577788889999 7666654
No 174
>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily, cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10 PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A* 2b1r_A* 2d2v_A*
Probab=23.83 E-value=93 Score=22.85 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=24.7
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEec
Q 032727 26 VIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFK 62 (135)
Q Consensus 26 ~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~ 62 (135)
.++|.++| .++...-..|++.+++ +++.++.+|
T Consensus 153 ~lei~~~~---~~K~~~l~~l~~~~~~-~~~~~~~~G 185 (244)
T 1s2o_A 153 DVDLLPQR---SNKGNATQYLQQHLAM-EPSQTLVCG 185 (244)
T ss_dssp EEEEEETT---CSHHHHHHHHHHHTTC-CGGGEEEEE
T ss_pred eEEeccCC---CChHHHHHHHHHHhCC-CHHHEEEEC
Confidence 35666654 6788899999999999 766666654
No 175
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Probab=23.82 E-value=67 Score=23.53 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=22.0
Q ss_pred EEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEec
Q 032727 28 DVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFK 62 (135)
Q Consensus 28 ~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~ 62 (135)
+|.++| .++.+.-..|++.+++ +++.++++|
T Consensus 180 ei~~~~---~~K~~~~~~~~~~~~~-~~~~~~~iG 210 (261)
T 2rbk_A 180 DVTAKG---DTKQKGIDEIIRHFGI-KLEETMSFG 210 (261)
T ss_dssp EEESTT---CSHHHHHHHHHHHHTC-CGGGEEEEE
T ss_pred EecCCC---CChHHHHHHHHHHcCC-CHHHEEEEC
Confidence 445443 5788888999999999 666655554
No 176
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=23.48 E-value=1.1e+02 Score=22.27 Aligned_cols=47 Identities=26% Similarity=0.209 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHhc
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKKF 88 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk~ 88 (135)
...+.++|++-++ .||. =.++.++. . ..+.+.|||.| |++.+.|.+.
T Consensus 119 ~~~t~~~L~~~F~-~~G~-v~~v~i~~----~-~~~~~kG~aFVeF~~~e~A~~A 166 (193)
T 2voo_A 119 TDATLDDIKEWLE-DKGQ-VLNIQMRR----T-LHKAFKGSIFVVFDSIESAKKF 166 (193)
T ss_dssp TTCCHHHHHHHHT-TSCC-EEEEEEEE----C-TTCCEEEEEEEEESSHHHHHHH
T ss_pred CcCCHHHHHHHHh-cCCC-EEEEEEEE----C-CCCCcccEEEEEECCHHHHHHH
Confidence 3467788887774 4554 12222222 1 23778899987 8888877654
No 177
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10
Probab=22.85 E-value=96 Score=23.21 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=24.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEec
Q 032727 27 IDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFK 62 (135)
Q Consensus 27 ~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~ 62 (135)
++|.++| .++...-..|++.+++ +++.++++|
T Consensus 190 lei~~~~---~~K~~~l~~l~~~~~~-~~~~~~~~G 221 (282)
T 1rkq_A 190 LEILDKR---VNKGTGVKSLADVLGI-KPEEIMAIG 221 (282)
T ss_dssp EEEEETT---CSHHHHHHHHHHHHTC-CGGGEEEEE
T ss_pred EEecCCC---CCCHHHHHHHHHHhCC-CHHHEEEEC
Confidence 5666654 6788899999999999 766666554
No 178
>3f0d_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; ssgcid, niaid, isoprene biosynthe lyase, metal-binding, structural genomics; 1.20A {Burkholderia pseudomallei} PDB: 3f0e_A 3f0f_A* 3f0g_A* 3ieq_A* 3iew_A* 3jvh_A* 3k14_A* 3k2x_A* 3ke1_A* 3mbm_A* 3p0z_A* 3p10_A* 3q8h_A* 3qhd_A* 3ikf_A* 3ike_A*
Probab=22.71 E-value=70 Score=24.59 Aligned_cols=31 Identities=6% Similarity=0.051 Sum_probs=26.0
Q ss_pred CCCCCHHHHHHHHHhHhCCCCCCeEEEeceee
Q 032727 34 RANVSKAELKEKLARMYEVKDPNAIFVFKFRT 65 (135)
Q Consensus 34 ~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T 65 (135)
+=.|-+.++++.||+.+++ +++.|-|.-=-|
T Consensus 127 Kl~p~~~~mr~~la~~L~i-~~~~VnVKATT~ 157 (183)
T 3f0d_A 127 KLAPHIDAMRANIAADLDL-PLDRVNVKAKTN 157 (183)
T ss_dssp CCGGGHHHHHHHHHHHHTC-CGGGEEEEEECC
T ss_pred cchhHHHHHHHHHHHHHCC-CcceEEEEEecC
Confidence 5678899999999999999 889998864333
No 179
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=22.63 E-value=34 Score=20.23 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=17.6
Q ss_pred CCCCCCHHHHHHHHHhHhCCCCCCeEE
Q 032727 33 GRANVSKAELKEKLARMYEVKDPNAIF 59 (135)
Q Consensus 33 g~~Tpsr~eIk~kLA~~~~~~~~~~Iv 59 (135)
|...|+.. ...+||..|++ +++.++
T Consensus 46 g~~~~~~~-~l~~ia~~l~~-~~~~l~ 70 (76)
T 3bs3_A 46 NKSQPSLD-MLVKVAELLNV-DPRQLI 70 (76)
T ss_dssp TSSCCCHH-HHHHHHHHHTS-CGGGGB
T ss_pred CCCCCCHH-HHHHHHHHHCc-CHHHHh
Confidence 45556554 45789999999 777654
No 180
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Probab=22.60 E-value=1.1e+02 Score=22.38 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=23.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEec
Q 032727 27 IDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFK 62 (135)
Q Consensus 27 ~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~ 62 (135)
++|.++| .++.+.-..|++.++. +++.++.+|
T Consensus 145 ~ei~~~~---~~K~~~l~~l~~~~~~-~~~~~~~iG 176 (227)
T 1l6r_A 145 WHLMNRG---EDKAFAVNKLKEMYSL-EYDEILVIG 176 (227)
T ss_dssp EEEEETT---CSHHHHHHHHHHHTTC-CGGGEEEEC
T ss_pred EEEecCC---CCHHHHHHHHHHHhCc-CHHHEEEEC
Confidence 5566654 6788899999999999 766665554
No 181
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=22.42 E-value=1.5e+02 Score=19.35 Aligned_cols=35 Identities=11% Similarity=0.202 Sum_probs=23.4
Q ss_pred EEEEEcCCCCCCCHH-----HHHHHHHhHhCCCCCCeEEEe
Q 032727 26 VIDVLHPGRANVSKA-----ELKEKLARMYEVKDPNAIFVF 61 (135)
Q Consensus 26 ~~~v~H~g~~Tpsr~-----eIk~kLA~~~~~~~~~~IvV~ 61 (135)
.+.|.-.|+-||..+ +|-+.|++.+|+ +++.|+|.
T Consensus 59 ~v~i~~~~g~t~eqk~~l~~~i~~~l~~~lgi-~~~~v~I~ 98 (115)
T 2xcz_A 59 YVEVKSIGALDGSRTQEVSELVCGHIEQNLGI-PADRIYIG 98 (115)
T ss_dssp EEEEEESSCCCTTHHHHHHHHHHHHHHHHHCC-CGGGEEEE
T ss_pred EEEEEEecCCCHHHHHHHHHHHHHHHHHHhCc-CcccEEEE
Confidence 444544455677754 677788889999 77766654
No 182
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=22.37 E-value=73 Score=21.33 Aligned_cols=46 Identities=17% Similarity=0.380 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHH
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAK 86 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 86 (135)
...+.++|++.+ ..||. =.++. +...-..|.+.|||.| |.|.+.+.
T Consensus 13 ~~~t~~~l~~~F-~~~G~-i~~v~----i~~~~~~g~~~g~afV~f~~~~~a~ 59 (167)
T 2cjk_A 13 WDTTEDNLREYF-GKYGT-VTDLK----IMKDPATGRSRGFGFLSFEKPSSVD 59 (167)
T ss_dssp TTCCHHHHHHHH-TTTCC-EEEEE----CCCCTTTSSCCSCEEEEESSTHHHH
T ss_pred CCCCHHHHHHHH-HhCCC-EEEEE----EEECCCCCCccceEEEEEccHHHHH
Confidence 456778888777 44553 11222 2222234556666665 55555443
No 183
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.23 E-value=1.9e+02 Score=19.72 Aligned_cols=41 Identities=15% Similarity=0.142 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+..||++.+ ..||. =.++.++.+ .|||.| |++.+.|..
T Consensus 41 ~~vte~dL~~lF-~~fG~-V~~v~i~~~----------kG~AFVeF~~~e~A~~ 82 (119)
T 2ad9_A 41 IDVTEGEVISLG-LPFGK-VTNLLMLKG----------KNQAFIEMNTEEAANT 82 (119)
T ss_dssp TTCCHHHHHHHH-TTTSC-CCEEEEEGG----------GTEEEEECSCHHHHHH
T ss_pred CCCCHHHHHHHH-HhcCC-EEEEEEeCC----------CCEEEEEECCHHHHHH
Confidence 457788888776 66776 355555543 467766 667666543
No 184
>2kzf_A RBFA, ribosome-binding factor A; JCSG, joint center structural genomics, PSI-biology, protein structure initiative; NMR {Thermotoga maritima}
Probab=22.09 E-value=1.8e+02 Score=19.58 Aligned_cols=44 Identities=11% Similarity=0.164 Sum_probs=34.4
Q ss_pred HHHHHHHHhH-hCCCCCCe----EEEeceeecCCCCEEEEEEEeeCCHH
Q 032727 40 AELKEKLARM-YEVKDPNA----IFVFKFRTHFGGGKSTGFGLIYDSVE 83 (135)
Q Consensus 40 ~eIk~kLA~~-~~~~~~~~----IvV~~~~T~fG~~~s~g~a~IYds~e 83 (135)
++|+..||.+ ..+.||.+ |-|.+++-.=....++.|.-++.+.+
T Consensus 13 ~~i~~~ls~i~~eikDprl~~~~vtVt~V~vs~Dl~~AkVyvs~~g~~~ 61 (106)
T 2kzf_A 13 SEIQKLLMEALQQLRDPRLKKDFVTFSRVELSKDKRYADVYVSFLGTPE 61 (106)
T ss_dssp HHHHHHHHHHHHTTCCSSCCGGGCCEEEEEECTTSCEEEEEECCSSCHH
T ss_pred HHHHHHHHHHHHhccCccccCCceEEEEEEECCCCCEEEEEEEeCCChh
Confidence 3677777764 44667765 89999999999999999999997543
No 185
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=22.08 E-value=74 Score=21.64 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=28.8
Q ss_pred eeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeE
Q 032727 14 FMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAI 58 (135)
Q Consensus 14 ~~~N~LL~RkEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~I 58 (135)
+....|+...++.|.|.- ..++.||++.+-++|++ +..-|
T Consensus 14 EKs~~~~e~n~y~F~V~~----~anK~eIK~aVE~lf~V-kV~~V 53 (95)
T 2zjr_Q 14 EKAYSAMERGVYSFWVSP----KATKTEIKDAIQQAFGV-RVIGI 53 (95)
T ss_dssp HHHHHHHTTTCCEEEECS----SCTHHHHHHHHHHHHCC-CCSEE
T ss_pred HHHHHHHHCCEEEEEEcC----CCCHHHHHHHHHHHhCC-CceEE
Confidence 334445665668888754 37799999999999999 54443
No 186
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=22.04 E-value=1.2e+02 Score=19.47 Aligned_cols=26 Identities=8% Similarity=0.120 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEE
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFV 60 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV 60 (135)
++-+-.+++++|++..+++..++-++
T Consensus 41 ~~~TV~~LK~~I~~~~gip~~~qrLi 66 (98)
T 4hcn_B 41 SSDTIDNVKSKIQDKEGIPPDQQRLI 66 (98)
T ss_dssp TTCBHHHHHHHHHHHHCCCGGGCEEE
T ss_pred CCCcHHHHHHHHHHHhCCChhHEEEE
Confidence 45578899999999999933334444
No 187
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=21.68 E-value=1.9e+02 Score=19.33 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCe--EEEeceeecCCCCEEEEEEEe-eCCHHHHH
Q 032727 35 ANVSKAELKEKLARMYEVKDPNA--IFVFKFRTHFGGGKSTGFGLI-YDSVENAK 86 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~--IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 86 (135)
.+.+-.+|++.++ .||. =..+ .++..++.. -.+.+.|||.| |.+.+.|.
T Consensus 55 ~~~te~~L~~~F~-~~G~-i~~~~~~~~~di~~~-~~g~~~g~afV~f~~~~~A~ 106 (143)
T 3egn_A 55 KHVQEKDLKYIFG-RYVD-FSSETQRIMFDIRLM-KEGRMKGQAFIGLPNEKAAA 106 (143)
T ss_dssp TTCCHHHHHHHHG-GGCC-TTCHHHHHHCEEEEE-EETTTEEEEEEECSSHHHHH
T ss_pred CCCCHHHHHHHHH-HhCC-cccccccceeeEEec-cCCCcccEEEEEeCCHHHHH
Confidence 4578889998884 5564 2332 011111110 02445667666 66666554
No 188
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=21.68 E-value=1e+02 Score=20.03 Aligned_cols=39 Identities=23% Similarity=0.471 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.+||++.++ .||. =.++.++ .|||.| |.|.+.|.+
T Consensus 41 ~~~t~~~L~~~F~-~~G~-i~~v~i~------------kg~afV~f~~~~~A~~ 80 (108)
T 2jvo_A 41 LDVQESELNEIFG-PFGP-MKEVKIL------------NGFAFVEFEEAESAAK 80 (108)
T ss_dssp TTCCHHHHHHHHT-TTSC-CCEEEEE------------TTEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-EEEEEEE------------CCEEEEEECCHHHHHH
Confidence 4567889888884 4554 2333333 466666 666666543
No 189
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.63 E-value=1.4e+02 Score=18.22 Aligned_cols=39 Identities=10% Similarity=0.298 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.++|++.++ .|+. =.++.++ .|||.| |+|.+.|..
T Consensus 18 ~~~t~~~l~~~F~-~~G~-i~~v~~~------------~g~afV~f~~~~~A~~ 57 (90)
T 2dnq_A 18 REATEQEIRSLFE-QYGK-VLECDII------------KNYGFVHIEDKTAAED 57 (90)
T ss_dssp SSCCHHHHHHHHH-TSSC-EEEEEEE------------TTEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hCCC-EEEEEEE------------CCEEEEEECCHHHHHH
Confidence 4577889988885 4554 1233332 245555 667666544
No 190
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=21.58 E-value=2.4e+02 Score=20.82 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+..+|++.++. +|. ....|.+.. ... +.+.|||.| |.+.+.+..
T Consensus 127 ~~~t~~~l~~~f~~-~G~-~i~~v~i~~--~~~--~~~~g~afV~f~~~~~a~~ 174 (292)
T 2ghp_A 127 PSYTQRNIRDLLQD-INV-VALSIRLPS--LRF--NTSRRFAYIDVTSKEDARY 174 (292)
T ss_dssp TTCCHHHHHHHHHH-TTC-CCCEEECC-----------CCEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHH-hCC-CeEEEEEEe--CCC--CCcceEEEEEECCHHHHHH
Confidence 45678899988855 663 234444432 222 446667766 666665544
No 191
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=21.50 E-value=2.3e+02 Score=20.24 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
.+.+.++|++.+ ..||. =.++.++ ..-..+.+.|||.| |.+.+.+.+
T Consensus 25 ~~~te~~L~~~F-~~~G~-I~~v~i~----~d~~tg~~~G~afV~F~~~~~A~~ 72 (213)
T 4f02_A 25 PDVTEAMLYEKF-SPAGP-ILSIRVC----RDMITRRSLGYAYVNFQQPADAER 72 (213)
T ss_dssp TTCCHHHHHHHH-GGGSC-EEEEEEE----ECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHH-HhhCC-EEEEEEe----cccCCCCccccccceeCCHHHHHH
Confidence 456788888877 45554 1233333 33345678888877 666666554
No 192
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}
Probab=21.30 E-value=1.1e+02 Score=23.06 Aligned_cols=25 Identities=12% Similarity=0.295 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHhHhCCCCCCeEEEec
Q 032727 37 VSKAELKEKLARMYEVKDPNAIFVFK 62 (135)
Q Consensus 37 psr~eIk~kLA~~~~~~~~~~IvV~~ 62 (135)
.++...-..|++.+|+ +++.++++|
T Consensus 227 ~~K~~al~~l~~~lgi-~~~e~i~~G 251 (304)
T 3l7y_A 227 LHKGWALQQLLKRWNF-TSDHLMAFG 251 (304)
T ss_dssp CSHHHHHHHHHHHTTC-CGGGEEEEE
T ss_pred CCHHHHHHHHHHHhCc-CHHHEEEEC
Confidence 5788899999999999 766666654
No 193
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=21.27 E-value=1e+02 Score=19.13 Aligned_cols=41 Identities=27% Similarity=0.396 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.+||++.++ .|+. =.++.++ + + .|||.| |.|.+.|.+
T Consensus 27 ~~~t~~~l~~~F~-~~G~-v~~v~~~----~--~----~g~afV~f~~~~~A~~ 68 (97)
T 1why_A 27 PNTSLAALAREFD-RFGS-IRTIDHV----K--G----DSFAYIQYESLDAAQA 68 (97)
T ss_dssp SSCCHHHHHHHHH-TTSC-EEEEEEC----S--S----SCCEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eeEEEEe----C--C----CCEEEEEECCHHHHHH
Confidence 4567889988774 4554 1222222 2 2 346655 666666543
No 194
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.01 E-value=83 Score=21.26 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHH
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENA 85 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~ 85 (135)
...+.+||++.+ ..||. =.++.++.+ .|||.| |++.+.|
T Consensus 26 ~~vte~dL~~lF-~~fG~-V~~v~i~~~----------kGfaFVeF~~~~~A 65 (105)
T 1sjq_A 26 IDVTEGEVISLG-LPFGK-VTNLLMLKG----------KNQAFIEMNTEEAA 65 (105)
T ss_dssp TTSCHHHHHHHH-HHHCC-EEEEEEETT----------TTEEEEEESSHHHH
T ss_pred CCCCHHHHHHHH-HhcCC-EEEEEEEcC----------CCEEEEEECCHHHH
Confidence 345678888777 56775 345555542 467766 6666654
No 195
>3td3_A Outer membrane protein OMP38; OMPA-like fold, cell-WALL attachment, peptidoglycan-binding, protein,peptide binding protein; 1.59A {Acinetobacter baumannii} PDB: 3td4_A* 3td5_A*
Probab=21.00 E-value=1.2e+02 Score=20.19 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=33.0
Q ss_pred CccceEEEEEEEcC-CCCC--CCHHHHHHHHHhHhCCCCCC-eEEEeceeecCC
Q 032727 19 LLSRKQFVIDVLHP-GRAN--VSKAELKEKLARMYEVKDPN-AIFVFKFRTHFG 68 (135)
Q Consensus 19 LL~RkEi~~~v~H~-g~~T--psr~eIk~kLA~~~~~~~~~-~IvV~~~~T~fG 68 (135)
+...-.+.+.|+|+ |+++ |.-.+....||..+.. .++ .|.|.|.--..|
T Consensus 6 ~~~~~~~~~~v~F~~~s~~l~~~~~~~L~~~a~~l~~-~~~~~i~I~GhtD~~g 58 (123)
T 3td3_A 6 LTEDLNMELRVFFDTNKSNIKDQYKPEIAKVAEKLSE-YPNATARIEGHTDNTG 58 (123)
T ss_dssp EEEEEEEEEEEECCTTCCCCCGGGHHHHHHHHHHHHH-STTCEEEEEECCCSCS
T ss_pred ccccccceeEEEeCCCChhcCHHHHHHHHHHHHHHHh-CCCceEEEEEEeCCCC
Confidence 33445677888887 4554 4444778889999987 666 477777655555
No 196
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=21.00 E-value=1.5e+02 Score=17.87 Aligned_cols=30 Identities=17% Similarity=0.296 Sum_probs=21.7
Q ss_pred eEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCe
Q 032727 23 KQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNA 57 (135)
Q Consensus 23 kEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~ 57 (135)
+.+.++|. ++-+-.++++.|++..++ +++.
T Consensus 14 ~~~~~~v~----~~~tV~~lK~~i~~~~~i-~~~~ 43 (85)
T 3mtn_B 14 KTITLEVE----PSDTIENVKAKIQDKEGI-PPDQ 43 (85)
T ss_dssp CEEEEEEC----TTCBHHHHHHHHHHHHCC-CGGG
T ss_pred CEEEEEEC----CCCCHHHHHHHHHHHHCc-ChHH
Confidence 34555543 456789999999999999 5443
No 197
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.98 E-value=1.7e+02 Score=18.55 Aligned_cols=46 Identities=28% Similarity=0.336 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.+||++.++ .|+. =.++.++.+ . .+.+.|||.| |.|.+.+..
T Consensus 25 ~~~~~~~l~~~f~-~~G~-i~~~~i~~~---~--~g~~~g~afV~f~~~~~a~~ 71 (114)
T 2do0_A 25 YKVGWKKLKEVFS-MAGV-VVRADILED---K--DGKSRGIGTVTFEQSIEAVQ 71 (114)
T ss_dssp TTCCHHHHHHHHT-TTSC-EEEEEEEEC---T--TCSEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEEEEEC---C--CCCeeeEEEEEECCHHHHHH
Confidence 4567889888774 4553 122222222 2 2677788876 677666543
No 198
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=20.82 E-value=1.9e+02 Score=19.61 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEE
Q 032727 25 FVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV 60 (135)
Q Consensus 25 i~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV 60 (135)
+.++|. ++-+-.+|+++|++..|+ +++.+.+
T Consensus 41 i~lev~----p~dTV~~lK~~Ia~k~Gi-p~~qQrL 71 (100)
T 1uh6_A 41 VRVKCN----TDDTIGDLKKLIAAQTGT-RWNKIVL 71 (100)
T ss_dssp EEEEEE----TTSBHHHHHHHHHHHHCC-CGGGCEE
T ss_pred EEEEeC----CCCcHHHHHHHHHHHhCC-CHHHEEE
Confidence 445543 345678999999999999 5554443
No 199
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.74 E-value=1.2e+02 Score=19.15 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=30.1
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCC-CEEEEEEEe-eCCHHHHHhc
Q 032727 26 VIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGG-GKSTGFGLI-YDSVENAKKF 88 (135)
Q Consensus 26 ~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~-~~s~g~a~I-Yds~e~~kk~ 88 (135)
.+-|-.. ....+.+||++.++ .|++ +-| .|...... +.+.|||.| |.+.+.|.+.
T Consensus 17 ~l~V~nl-p~~~t~~~l~~~F~-~~Gi-----~~v-~i~~~~~~~g~~~g~afV~f~~~~~a~~A 73 (104)
T 1wi8_A 17 TAFLGNL-PYDVTEESIKEFFR-GLNI-----SAV-RLPREPSNPERLKGFGYAEFEDLDSLLSA 73 (104)
T ss_dssp EEEEESC-CSSCCHHHHHHHTT-TSCE-----EEE-ECCBCSSCTTSBCSCEEEEESSHHHHHHH
T ss_pred EEEEeCC-CCcCCHHHHHHHHH-HCCc-----eEE-EEecCCCCCCCcCeEEEEEECCHHHHHHH
Confidence 3334443 34577888887774 3343 112 22222222 677788877 7777777653
No 200
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=20.62 E-value=35 Score=19.98 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=16.5
Q ss_pred CCCCCCHHHHHHHHHhHhCCCCCCeE
Q 032727 33 GRANVSKAELKEKLARMYEVKDPNAI 58 (135)
Q Consensus 33 g~~Tpsr~eIk~kLA~~~~~~~~~~I 58 (135)
|...|+... ..+||..|++ +++.+
T Consensus 49 g~~~~~~~~-l~~l~~~l~~-~~~~l 72 (74)
T 1y7y_A 49 GQRNVSLVN-ILKLATALDI-EPREL 72 (74)
T ss_dssp TCSCCBHHH-HHHHHHHTTS-CGGGG
T ss_pred CCCCCCHHH-HHHHHHHhCc-CHHHH
Confidence 455566544 5689999999 76643
No 201
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=20.61 E-value=42 Score=22.97 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHh
Q 032727 35 ANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKK 87 (135)
Q Consensus 35 ~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 87 (135)
...+.+||++.++ .||. =.++.++.+- -.+.+.|||.| |+|.+.+.+
T Consensus 57 ~~~te~~L~~~F~-~~G~-i~~v~i~~~~----~~g~~~G~afV~F~~~~~A~~ 104 (135)
T 2lea_A 57 YRTSPDTLRRVFE-KYGR-VGDVYIPRDR----YTKESRGFAFVRFHDKRDAED 104 (135)
T ss_dssp SSCHHHHHHHHHG-GGSC-CSEEECCCCS----SSSSCCSCCEEECSCHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-EEEEEEEecC----CCCccceEEEEEECCHHHHHH
Confidence 4567788888884 4664 2333333222 23556777776 777776654
No 202
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=20.08 E-value=79 Score=20.91 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=19.2
Q ss_pred CCCCCCHHHHHHHHHhHhCCCCCCeEEE
Q 032727 33 GRANVSKAELKEKLARMYEVKDPNAIFV 60 (135)
Q Consensus 33 g~~Tpsr~eIk~kLA~~~~~~~~~~IvV 60 (135)
|...|+. +...+||..|++ +++.++.
T Consensus 59 G~~~ps~-~~l~~ia~~l~v-~~~~l~~ 84 (111)
T 3mlf_A 59 DSTNIKD-SLLSKYMSAFNV-KYDDIFL 84 (111)
T ss_dssp CCTTCCH-HHHHHHHHHHTC-CGGGEEC
T ss_pred CCCCCCH-HHHHHHHHHhCc-CHHHHhC
Confidence 4556664 566899999999 8887653
No 203
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=20.04 E-value=64 Score=24.51 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=18.8
Q ss_pred HHHHHHHHHhHhCCCCCCeEEEec
Q 032727 39 KAELKEKLARMYEVKDPNAIFVFK 62 (135)
Q Consensus 39 r~eIk~kLA~~~~~~~~~~IvV~~ 62 (135)
-.++++.||+.+++ +++.|++.+
T Consensus 67 ~~~lr~~la~~~~~-~~~~v~~~~ 89 (365)
T 3get_A 67 MIELKSTLAQKYKV-QNENIIIGA 89 (365)
T ss_dssp CHHHHHHHHHHHTC-CGGGEEEES
T ss_pred hHHHHHHHHHHhCC-CcceEEECC
Confidence 37999999999999 777777643
Done!