Your job contains 1 sequence.
>032728
MICFWFCVIETKLFVNVQVYVDGMPALSSKERKATLREFYAIIYPSLRQLESEFSELEDN
SKRDQCSEISSRKRVEERRKLSDKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWN
ARSQSCLFAVAAYRE
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 032728
(135 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2149750 - symbol:AIRP2 "ABA Insensitive RING P... 295 4.0e-26 1
TAIR|locus:505006703 - symbol:AT5G58787 "AT5G58787" speci... 286 3.6e-25 1
TAIR|locus:505006120 - symbol:AT1G13195 species:3702 "Ara... 286 3.6e-25 1
TAIR|locus:2024026 - symbol:AT1G24440 species:3702 "Arabi... 276 4.2e-24 1
DICTYBASE|DDB_G0292408 - symbol:DDB_G0292408 "RING finger... 118 3.7e-07 1
ZFIN|ZDB-GENE-040625-71 - symbol:rnf141 "ring finger prot... 108 6.0e-06 1
UNIPROTKB|O76064 - symbol:RNF8 "E3 ubiquitin-protein liga... 109 2.1e-05 1
UNIPROTKB|Q5ZM74 - symbol:RNF141 "RING finger protein 141... 103 2.4e-05 1
UNIPROTKB|I3LUY7 - symbol:I3LUY7 "Uncharacterized protein... 98 3.0e-05 1
UNIPROTKB|Q32L15 - symbol:RNF141 "RING finger protein 141... 102 3.1e-05 1
UNIPROTKB|F1Q4F0 - symbol:RNF141 "RING finger protein 141... 102 3.1e-05 1
UNIPROTKB|Q8WVD5 - symbol:RNF141 "RING finger protein 141... 102 3.1e-05 1
MGI|MGI:1914400 - symbol:Rnf141 "ring finger protein 141"... 102 3.1e-05 1
RGD|1303154 - symbol:rnf141 "ring finger protein 141" spe... 102 3.1e-05 1
UNIPROTKB|Q6IV57 - symbol:Rnf141 "RING finger protein 141... 102 3.1e-05 1
UNIPROTKB|Q2XNS1 - symbol:RNF141 "RING finger protein 141... 102 3.2e-05 1
UNIPROTKB|I3LDC9 - symbol:RNF141 "Uncharacterized protein... 100 5.3e-05 1
UNIPROTKB|Q5R4I2 - symbol:RNF8 "E3 ubiquitin-protein liga... 105 5.7e-05 1
UNIPROTKB|Q7ZX20 - symbol:rnf8-a "E3 ubiquitin-protein li... 105 6.6e-05 1
UNIPROTKB|E2RKD8 - symbol:RNF8 "Uncharacterized protein" ... 104 7.3e-05 1
UNIPROTKB|J9P6M8 - symbol:RNF8 "Uncharacterized protein" ... 104 7.3e-05 1
MGI|MGI:1929069 - symbol:Rnf8 "ring finger protein 8" spe... 103 9.4e-05 1
UNIPROTKB|Q6LFN2 - symbol:PFF0165c "RING finger protein P... 107 9.7e-05 1
UNIPROTKB|Q6NRG0 - symbol:rnf8-b "E3 ubiquitin-protein li... 103 0.00011 1
UNIPROTKB|F1RVS2 - symbol:LOC100153408 "Uncharacterized p... 102 0.00012 1
UNIPROTKB|I3L6W2 - symbol:LOC100153408 "Uncharacterized p... 102 0.00012 1
POMBASE|SPBC17A3.10 - symbol:pas4 "peroxisomal ubiquitin-... 99 0.00012 1
UNIPROTKB|Q2HJ46 - symbol:RNF8 "E3 ubiquitin-protein liga... 101 0.00015 1
ZFIN|ZDB-GENE-040426-849 - symbol:rnf8 "ring finger prote... 101 0.00017 1
UNIPROTKB|E9PN08 - symbol:RNF5 "E3 ubiquitin-protein liga... 86 0.00057 1
DICTYBASE|DDB_G0289719 - symbol:DDB_G0289719 "SFRS2-inter... 100 0.00072 1
FB|FBgn0035233 - symbol:Pex10 "Peroxin 10" species:7227 "... 96 0.0010 1
>TAIR|locus:2149750 [details] [associations]
symbol:AIRP2 "ABA Insensitive RING Protein 2"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0015996 "chlorophyll
catabolic process" evidence=RCA] InterPro:IPR001841 PROSITE:PS50089
SMART:SM00184 Prosite:PS00518 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907
EMBL:AL161946 HOGENOM:HOG000241127 ProtClustDB:CLSN2685154
EMBL:AY050835 EMBL:AY091165 EMBL:DQ059129 IPI:IPI00537853
PIR:T48173 RefSeq:NP_195772.1 UniGene:At.22936
ProteinModelPortal:Q9M022 SMR:Q9M022 STRING:Q9M022
EnsemblPlants:AT5G01520.1 GeneID:831747 KEGG:ath:AT5G01520
TAIR:At5g01520 InParanoid:Q9M022 OMA:RNWRARS PhylomeDB:Q9M022
Genevestigator:Q9M022 Uniprot:Q9M022
Length = 242
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 49/111 (44%), Positives = 77/111 (69%)
Query: 18 QVYVDGMPALSSKERKATLREFYAIIYPSLRQLESEFSELEDNSKRDQCSEISSRKRVEE 77
+ YVDG +S ERK ++REFY +++PSL QL +++E+ +++ C + +K +
Sbjct: 72 KAYVDGKTTMSLHERKTSIREFYDVLFPSLLQLHGGITDVEERKQKEICDKRYRKKDRTD 131
Query: 78 RRKLSDKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCLF 128
+ K+S+ DL+R +ECGIC+E K+VLP C HS+C+NC+ +W ARSQSC F
Sbjct: 132 KGKMSEIDLEREEECGICLEIRNKVVLPTCNHSMCINCYRNWRARSQSCPF 182
>TAIR|locus:505006703 [details] [associations]
symbol:AT5G58787 "AT5G58787" species:3702 "Arabidopsis
thaliana" [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] InterPro:IPR001841 PROSITE:PS50089 SMART:SM00184
Prosite:PS00518 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 eggNOG:NOG273394 EMBL:AY088898 EMBL:BT005412
EMBL:AK118993 IPI:IPI00519998 RefSeq:NP_568885.1 UniGene:At.29261
ProteinModelPortal:Q8L8N5 SMR:Q8L8N5 STRING:Q8L8N5
EnsemblPlants:AT5G58787.1 GeneID:835995 KEGG:ath:AT5G58787
TAIR:At5g58787 HOGENOM:HOG000241127 InParanoid:Q8L8N5 OMA:DWRGRSQ
PhylomeDB:Q8L8N5 ProtClustDB:CLSN2685154 ArrayExpress:Q8L8N5
Genevestigator:Q8L8N5 Uniprot:Q8L8N5
Length = 242
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 50/109 (45%), Positives = 76/109 (69%)
Query: 20 YVDGMPALSSKERKATLREFYAIIYPSLRQLESEFSELEDNSKRDQCSEISSRKRVEERR 79
Y DG +S ERKA++REF A+I PSL QL+ ++++D+ +++ C R R ++
Sbjct: 75 YADGKTTMSVYERKASIREFQAVILPSLSQLQRGVTDIDDSKQKEVCK---MRYRKKDES 131
Query: 80 KLSDKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCLF 128
++S+ +++R +ECGICME +K+VLPNC HSLC+ C+ DW RSQSC F
Sbjct: 132 EMSEIEIEREEECGICMEMNSKVVLPNCTHSLCIKCYRDWRGRSQSCPF 180
>TAIR|locus:505006120 [details] [associations]
symbol:AT1G13195 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0010200 "response to chitin" evidence=RCA]
InterPro:IPR001841 PROSITE:PS50089 SMART:SM00184 Prosite:PS00518
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AC007357
InterPro:IPR017907 HOGENOM:HOG000241127 ProtClustDB:CLSN2685154
UniGene:At.27310 UniGene:At.48183 EMBL:AY087531 EMBL:BT024484
EMBL:AK226915 IPI:IPI00548949 PIR:D86266 RefSeq:NP_563922.1
ProteinModelPortal:Q9SAF3 SMR:Q9SAF3 EnsemblPlants:AT1G13195.1
GeneID:837878 KEGG:ath:AT1G13195 TAIR:At1g13195 InParanoid:Q9SAF3
OMA:CLIPRYL PhylomeDB:Q9SAF3 Genevestigator:Q9SAF3 Uniprot:Q9SAF3
Length = 260
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 58/127 (45%), Positives = 77/127 (60%)
Query: 7 CVIETKL-FVNVQVYV---DGMPALSSKERKATLREFYAIIYPSLRQLESEFSELEDNSK 62
C+I L +V VY DG P L++ RKAT+ EFY +I PSL+ L S ELE
Sbjct: 72 CLIPRYLNLFHVLVYKVQSDGQPKLTTHGRKATISEFYGVILPSLQLLHSNLDELETTDI 131
Query: 63 RDQCSEISSRKRVEERR-KLSDKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNA 121
+S + E R + S+ L+R +ECGIC+E CTKMVLPNC HS+C+ C+ +WN
Sbjct: 132 GFDLKRLSKKITKEARSSRFSNAGLEREEECGICLETCTKMVLPNCCHSMCIKCYRNWNL 191
Query: 122 RSQSCLF 128
+SQSC F
Sbjct: 192 KSQSCPF 198
>TAIR|locus:2024026 [details] [associations]
symbol:AT1G24440 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 PROSITE:PS50089 SMART:SM00184
Prosite:PS00518 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
EMBL:AC000103 InterPro:IPR017907 HOGENOM:HOG000241127
ProtClustDB:CLSN2685154 EMBL:AY085533 EMBL:BT000927 IPI:IPI00547120
PIR:E86378 RefSeq:NP_564218.1 UniGene:At.26915
ProteinModelPortal:Q9FYL9 SMR:Q9FYL9 EnsemblPlants:AT1G24440.1
GeneID:839060 KEGG:ath:AT1G24440 TAIR:At1g24440 eggNOG:NOG314445
InParanoid:Q9FYL9 OMA:CRGSIKR PhylomeDB:Q9FYL9 ArrayExpress:Q9FYL9
Genevestigator:Q9FYL9 Uniprot:Q9FYL9
Length = 251
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 53/120 (44%), Positives = 77/120 (64%)
Query: 14 FVNVQVY---VDGMPALSSKERKATLREFYAIIYPSLRQLESEFSELEDNSKRDQCSEIS 70
F ++ +Y DG S RKAT+REFY +I PSL +L F++L D S +
Sbjct: 72 FFHILIYKVRADGRWNRSRYGRKATIREFYGVILPSLERLHINFADLPDESLWYPNPKAI 131
Query: 71 SRKR--VEERRKLSDKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCLF 128
++K+ +E R ++ DL+R DECGIC+E CTKMVLPNC H++C+ C+ +WN +S+SC F
Sbjct: 132 TKKQYDIEGSRYMNSIDLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPF 191
>DICTYBASE|DDB_G0292408 [details] [associations]
symbol:DDB_G0292408 "RING finger protein 141"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 PROSITE:PS50089 SMART:SM00184
dictyBase:DDB_G0292408 Prosite:PS00518 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AAFI02000190
InterPro:IPR017907 eggNOG:NOG273394 RefSeq:XP_629590.1
ProteinModelPortal:Q54DA6 EnsemblProtists:DDB0184364 GeneID:8628650
KEGG:ddi:DDB_G0292408 InParanoid:Q54DA6 OMA:TETILWK Uniprot:Q54DA6
Length = 213
Score = 118 (46.6 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 36/126 (28%), Positives = 60/126 (47%)
Query: 12 KLFVNVQVYV-----DGM-----PALSSKERKATLREFYAIIYPSLRQLESEFSELEDNS 61
KL VNV + V DG P L+SK T EFY+ L ++ F + + +
Sbjct: 59 KLLVNVSILVFNKKNDGNYKNEEPILNSK---LTFGEFYSF----LNNIQLYFEKEDSKN 111
Query: 62 KRDQCSEISSRKRVEERRKLSDKDLDRNDECGICMEN-CTKMVLPNCGHSLCVNCFHDWN 120
K + + ++ EE+ K+ +++ ++ C IC + T +V +C H+ C C DW
Sbjct: 112 KNNSTTIATTTTTAEEKFKIEEEE---DNLCPICFDKEATFVVSSDCFHAFCPECAEDWK 168
Query: 121 ARSQSC 126
+RS C
Sbjct: 169 SRSNLC 174
>ZFIN|ZDB-GENE-040625-71 [details] [associations]
symbol:rnf141 "ring finger protein 141" species:7955
"Danio rerio" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 SMART:SM00184 Prosite:PS00518
ZFIN:ZDB-GENE-040625-71 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907 CTD:50862
eggNOG:NOG273394 HOGENOM:HOG000247058 HOVERGEN:HBG055763
OrthoDB:EOG4GHZQ3 EMBL:AY621088 EMBL:BC071534 IPI:IPI00613818
RefSeq:NP_001007291.1 UniGene:Dr.77741 ProteinModelPortal:Q6IV56
SMR:Q6IV56 GeneID:414846 KEGG:dre:414846 InParanoid:Q6IV56
NextBio:20818742 Uniprot:Q6IV56
Length = 222
Score = 108 (43.1 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 32/107 (29%), Positives = 47/107 (43%)
Query: 22 DGMPALSSKERKATLREFYAIIYPSLRQLESEFSE--LEDNSKRDQCSEISSRKRVEERR 79
DGM S R L +F + Q FS + S D C RV++
Sbjct: 86 DGMVEAS---RIMNLYQFIQLYKDITSQAAEVFSSNVAAEGSSEDTCQASMWMGRVKQ-- 140
Query: 80 KLSDKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
L+D++ EC ICM+ ++LP C HS C C W+ +S++C
Sbjct: 141 -LTDEE-----ECCICMDGKADLILP-CAHSFCQKCIDKWSGQSRNC 180
>UNIPROTKB|O76064 [details] [associations]
symbol:RNF8 "E3 ubiquitin-protein ligase RNF8" species:9606
"Homo sapiens" [GO:0007067 "mitosis" evidence=IEA] [GO:0051301
"cell division" evidence=IEA] [GO:0030496 "midbody" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0010212 "response
to ionizing radiation" evidence=IDA] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0042393 "histone binding" evidence=IDA]
[GO:0045739 "positive regulation of DNA repair" evidence=IDA]
[GO:0006302 "double-strand break repair" evidence=IDA] [GO:0033522
"histone H2A ubiquitination" evidence=IDA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0000151 "ubiquitin ligase complex"
evidence=IDA] [GO:0045900 "negative regulation of translational
elongation" evidence=IMP] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IDA] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0031625 "ubiquitin protein
ligase binding" evidence=IPI] [GO:0070936 "protein K48-linked
ubiquitination" evidence=IDA] [GO:0000781 "chromosome, telomeric
region" evidence=ISS] [GO:0051865 "protein autoubiquitination"
evidence=IDA] [GO:0035861 "site of double-strand break"
evidence=IDA] [GO:0036297 "interstrand cross-link repair"
evidence=TAS] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=ISS] [GO:0007286 "spermatid
development" evidence=ISS] [GO:0043486 "histone exchange"
evidence=ISS] [GO:0070535 "histone H2A K63-linked ubiquitination"
evidence=IMP;IDA] [GO:0008270 "zinc ion binding" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0033523 "histone H2B ubiquitination" evidence=ISS] [GO:0070534
"protein K63-linked ubiquitination" evidence=IDA] [GO:0045190
"isotype switching" evidence=ISS] InterPro:IPR001841
InterPro:IPR000253 InterPro:IPR008984 InterPro:IPR017335
Pfam:PF00498 Pfam:PF13639 PIRSF:PIRSF037950 PROSITE:PS50006
PROSITE:PS50089 SMART:SM00184 SMART:SM00240 UniPathway:UPA00143
Prosite:PS00518 GO:GO:0005634 GO:GO:0042803 EMBL:CH471081
GO:GO:0051301 GO:GO:0007067 GO:GO:0007286 GO:GO:0046872
GO:GO:0008270 GO:GO:0003682 Gene3D:2.60.200.20 SUPFAM:SSF49879
GO:GO:0010212 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0006511
GO:GO:0043486 GO:GO:0045190 GO:GO:0004842 GO:GO:0030496
GO:GO:0042393 GO:GO:0045739 GO:GO:0000151 InterPro:IPR017907
GO:GO:0070936 GO:GO:0051865 GO:GO:0000781 GO:GO:0006303
GO:GO:0033523 GO:GO:0036297 GO:GO:0045900 GO:GO:0035861
GO:GO:0070535 HOVERGEN:HBG023954 KO:K10667 CTD:9025
eggNOG:NOG242257 HOGENOM:HOG000154169 OMA:EVTEEDW OrthoDB:EOG4TF0KP
PANTHER:PTHR15067:SF3 EMBL:AB012770 EMBL:AF334675 EMBL:AB014546
EMBL:AK298319 EMBL:BT007446 EMBL:AK222765 EMBL:AL096712
EMBL:BC007517 IPI:IPI00022561 IPI:IPI00923427 RefSeq:NP_003949.1
RefSeq:NP_898901.1 UniGene:Hs.485278 PDB:2CSW PDB:2PIE PDB:4AYC
PDB:4EPO PDBsum:2CSW PDBsum:2PIE PDBsum:4AYC PDBsum:4EPO
ProteinModelPortal:O76064 SMR:O76064 DIP:DIP-31265N IntAct:O76064
MINT:MINT-1459889 STRING:O76064 PhosphoSite:O76064 PaxDb:O76064
PRIDE:O76064 DNASU:9025 Ensembl:ENST00000229866
Ensembl:ENST00000373479 Ensembl:ENST00000394443
Ensembl:ENST00000469731 GeneID:9025 KEGG:hsa:9025 UCSC:uc003onq.4
GeneCards:GC06P037321 HGNC:HGNC:10071 MIM:611685 neXtProt:NX_O76064
PharmGKB:PA34445 PhylomeDB:O76064 EvolutionaryTrace:O76064
GenomeRNAi:9025 NextBio:33813 ArrayExpress:O76064 Bgee:O76064
CleanEx:HS_RNF8 Genevestigator:O76064 GermOnline:ENSG00000112130
Uniprot:O76064
Length = 485
Score = 109 (43.4 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 32/124 (25%), Positives = 57/124 (45%)
Query: 12 KLFVNVQVYVDGMP-ALSSKERKA----TLREFYAIIYPSLRQLESEFSEL--EDNSKRD 64
K F + ++ G+ A K+ K L+E +A++ L + + +F + N + +
Sbjct: 315 KTFQEEEQHLQGLEIAQGEKDLKQQLAQALQEHWALM-EELNRSKKDFEAIIQAKNKELE 373
Query: 65 QCSEISSRKRVEERRKLSD-KDLDRND-ECGICMENCTKMVLPNCGHSLCVNCFHDWNAR 122
Q E + + ++ LS D+ N+ +C IC E + V NC HS C C ++W R
Sbjct: 374 QTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR 433
Query: 123 SQSC 126
C
Sbjct: 434 KIEC 437
>UNIPROTKB|Q5ZM74 [details] [associations]
symbol:RNF141 "RING finger protein 141" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR001841
PROSITE:PS50089 SMART:SM00184 Prosite:PS00518 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 CTD:50862 eggNOG:NOG273394
GeneTree:ENSGT00390000003145 HOGENOM:HOG000247058
HOVERGEN:HBG055763 OMA:MWMGRVK OrthoDB:EOG4GHZQ3 EMBL:AJ719510
IPI:IPI00597758 RefSeq:NP_001007926.1 UniGene:Gga.7687
ProteinModelPortal:Q5ZM74 SMR:Q5ZM74 Ensembl:ENSGALT00000009054
GeneID:423039 KEGG:gga:423039 InParanoid:Q5ZM74 NextBio:20825570
Uniprot:Q5ZM74
Length = 230
Score = 103 (41.3 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 90 DECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
DEC ICM+ ++LP C HS C C W+ R +SC
Sbjct: 153 DECCICMDGRVDLILP-CAHSFCQKCIDKWSDRHRSC 188
>UNIPROTKB|I3LUY7 [details] [associations]
symbol:I3LUY7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051301 "cell division" evidence=IEA] [GO:0016881
"acid-amino acid ligase activity" evidence=IEA] [GO:0016567
"protein ubiquitination" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR017335 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 Prosite:PS00518 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907
GeneTree:ENSGT00400000022349 PANTHER:PTHR15067:SF3 EMBL:CU855572
Ensembl:ENSSSCT00000029099 OMA:VEMKEHR Uniprot:I3LUY7
Length = 135
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 60 NSKRDQCSEISSRKRVEERRKLSD-KDLDRND-ECGICMENCTKMVLPNCGHSLCVNCFH 117
N + +Q E + + ++ LS D+ N+ +C IC E + V NC HS C C +
Sbjct: 19 NKELEQTKEEKEKVQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCIN 78
Query: 118 DWNARSQSC 126
+W R C
Sbjct: 79 EWMKRKVEC 87
>UNIPROTKB|Q32L15 [details] [associations]
symbol:RNF141 "RING finger protein 141" species:9913 "Bos
taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001841 Pfam:PF13639
PROSITE:PS50089 SMART:SM00184 Prosite:PS00518 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 EMBL:BC109813 IPI:IPI00760467
RefSeq:NP_001035656.1 UniGene:Bt.107371 ProteinModelPortal:Q32L15
SMR:Q32L15 PRIDE:Q32L15 Ensembl:ENSBTAT00000021020 GeneID:539455
KEGG:bta:539455 CTD:50862 eggNOG:NOG273394
GeneTree:ENSGT00390000003145 HOGENOM:HOG000247058
HOVERGEN:HBG055763 InParanoid:Q32L15 OMA:MWMGRVK OrthoDB:EOG4GHZQ3
NextBio:20877998 Uniprot:Q32L15
Length = 230
Score = 102 (41.0 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 84 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
K L +EC ICM+ ++LP C HS C C W+ R ++C
Sbjct: 147 KQLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNC 188
>UNIPROTKB|F1Q4F0 [details] [associations]
symbol:RNF141 "RING finger protein 141" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
Prosite:PS00518 GO:GO:0006355 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907
GeneTree:ENSGT00390000003145 OMA:MWMGRVK EMBL:AAEX03012903
ProteinModelPortal:F1Q4F0 Ensembl:ENSCAFT00000039375 Uniprot:F1Q4F0
Length = 230
Score = 102 (41.0 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 84 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
K L +EC ICM+ ++LP C HS C C W+ R ++C
Sbjct: 147 KQLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNC 188
>UNIPROTKB|Q8WVD5 [details] [associations]
symbol:RNF141 "RING finger protein 141" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 SMART:SM00184 Prosite:PS00518
EMBL:CH471064 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 CTD:50862 eggNOG:NOG273394 HOGENOM:HOG000247058
HOVERGEN:HBG055763 OMA:MWMGRVK OrthoDB:EOG4GHZQ3 EMBL:AF214680
EMBL:AK289764 EMBL:BC018104 EMBL:BT006662 IPI:IPI00152564
RefSeq:NP_057506.2 UniGene:Hs.44685 UniGene:Hs.712894 PDB:2ECN
PDBsum:2ECN ProteinModelPortal:Q8WVD5 SMR:Q8WVD5 IntAct:Q8WVD5
STRING:Q8WVD5 PhosphoSite:Q8WVD5 DMDM:74751546 PRIDE:Q8WVD5
DNASU:50862 Ensembl:ENST00000265981 GeneID:50862 KEGG:hsa:50862
UCSC:uc001mis.1 GeneCards:GC11M010533 HGNC:HGNC:21159 HPA:HPA018133
neXtProt:NX_Q8WVD5 PharmGKB:PA134981805 InParanoid:Q8WVD5
PhylomeDB:Q8WVD5 ChiTaRS:RNF141 EvolutionaryTrace:Q8WVD5
GenomeRNAi:50862 NextBio:53366 ArrayExpress:Q8WVD5 Bgee:Q8WVD5
CleanEx:HS_RNF141 CleanEx:HS_ZNF230 Genevestigator:Q8WVD5
GermOnline:ENSG00000110315 Uniprot:Q8WVD5
Length = 230
Score = 102 (41.0 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 84 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
K L +EC ICM+ ++LP C HS C C W+ R ++C
Sbjct: 147 KQLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNC 188
>MGI|MGI:1914400 [details] [associations]
symbol:Rnf141 "ring finger protein 141" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IDA] [GO:0005575
"cellular_component" evidence=ND] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 MGI:MGI:1914400 Prosite:PS00518 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 CTD:50862 eggNOG:NOG273394
GeneTree:ENSGT00390000003145 HOGENOM:HOG000247058
HOVERGEN:HBG055763 OMA:MWMGRVK EMBL:AF353167 EMBL:AK006791
EMBL:AK011839 EMBL:AK015505 EMBL:BC018553 IPI:IPI00874421
RefSeq:NP_080275.2 UniGene:Mm.96867 ProteinModelPortal:Q99MB7
SMR:Q99MB7 STRING:Q99MB7 PhosphoSite:Q99MB7 PaxDb:Q99MB7
PRIDE:Q99MB7 Ensembl:ENSMUST00000106682 Ensembl:ENSMUST00000177236
GeneID:67150 KEGG:mmu:67150 UCSC:uc009jfp.1 NextBio:323730
Bgee:Q99MB7 CleanEx:MM_RNF141 Genevestigator:Q99MB7
GermOnline:ENSMUSG00000030788 Uniprot:Q99MB7
Length = 230
Score = 102 (41.0 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 84 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
K L +EC ICM+ ++LP C HS C C W+ R ++C
Sbjct: 147 KQLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNC 188
>RGD|1303154 [details] [associations]
symbol:rnf141 "ring finger protein 141" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA;ISO] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 SMART:SM00184 RGD:1303154
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 CTD:50862 eggNOG:NOG273394
GeneTree:ENSGT00390000003145 HOGENOM:HOG000247058
HOVERGEN:HBG055763 OrthoDB:EOG4GHZQ3 EMBL:AY621087 IPI:IPI00192051
RefSeq:NP_001001800.1 UniGene:Rn.127990 ProteinModelPortal:Q6IV57
SMR:Q6IV57 PhosphoSite:Q6IV57 PRIDE:Q6IV57
Ensembl:ENSRNOT00000024561 GeneID:308900 KEGG:rno:308900
UCSC:RGD:1303154 NextBio:659756 ArrayExpress:Q6IV57
Genevestigator:Q6IV57 GermOnline:ENSRNOG00000017900 Uniprot:Q6IV57
Length = 230
Score = 102 (41.0 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 84 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
K L +EC ICM+ ++LP C HS C C W+ R ++C
Sbjct: 147 KQLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNC 188
>UNIPROTKB|Q6IV57 [details] [associations]
symbol:Rnf141 "RING finger protein 141" species:10116
"Rattus norvegicus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
RGD:1303154 Prosite:PS00518 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907 CTD:50862
eggNOG:NOG273394 GeneTree:ENSGT00390000003145 HOGENOM:HOG000247058
HOVERGEN:HBG055763 OrthoDB:EOG4GHZQ3 EMBL:AY621087 IPI:IPI00192051
RefSeq:NP_001001800.1 UniGene:Rn.127990 ProteinModelPortal:Q6IV57
SMR:Q6IV57 PhosphoSite:Q6IV57 PRIDE:Q6IV57
Ensembl:ENSRNOT00000024561 GeneID:308900 KEGG:rno:308900
UCSC:RGD:1303154 NextBio:659756 ArrayExpress:Q6IV57
Genevestigator:Q6IV57 GermOnline:ENSRNOG00000017900 Uniprot:Q6IV57
Length = 230
Score = 102 (41.0 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 84 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
K L +EC ICM+ ++LP C HS C C W+ R ++C
Sbjct: 147 KQLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNC 188
>UNIPROTKB|Q2XNS1 [details] [associations]
symbol:RNF141 "RING finger protein 141" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 CTD:50862 eggNOG:NOG273394
HOGENOM:HOG000247058 HOVERGEN:HBG055763 OrthoDB:EOG4GHZQ3
EMBL:DQ273566 RefSeq:NP_001041484.1 UniGene:Cfa.10740
ProteinModelPortal:Q2XNS1 SMR:Q2XNS1 GeneID:476852 KEGG:cfa:476852
InParanoid:Q2XNS1 NextBio:20852447 Uniprot:Q2XNS1
Length = 231
Score = 102 (41.0 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 84 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
K L +EC ICM+ ++LP C HS C C W+ R ++C
Sbjct: 148 KQLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNC 189
>UNIPROTKB|I3LDC9 [details] [associations]
symbol:RNF141 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001841 Pfam:PF13639
PROSITE:PS50089 SMART:SM00184 Prosite:PS00518 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 GeneTree:ENSGT00390000003145
OMA:MWMGRVK EMBL:FP312948 Ensembl:ENSSSCT00000022900 Uniprot:I3LDC9
Length = 231
Score = 100 (40.3 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 84 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
K L +EC ICM+ ++LP C HS C C W+ R ++C
Sbjct: 148 KQLTDEEECCICMDGRADLILP-CTHSFCQKCIDKWSDRHRNC 189
>UNIPROTKB|Q5R4I2 [details] [associations]
symbol:RNF8 "E3 ubiquitin-protein ligase RNF8" species:9601
"Pongo abelii" [GO:0000151 "ubiquitin ligase complex" evidence=ISS]
[GO:0000781 "chromosome, telomeric region" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004842
"ubiquitin-protein ligase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0006302 "double-strand break repair"
evidence=ISS] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0007286 "spermatid development" evidence=ISS] [GO:0008270 "zinc
ion binding" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0033522 "histone H2A ubiquitination"
evidence=ISS] [GO:0033523 "histone H2B ubiquitination"
evidence=ISS] [GO:0035861 "site of double-strand break"
evidence=ISS] [GO:0042393 "histone binding" evidence=ISS]
[GO:0042803 "protein homodimerization activity" evidence=ISS]
[GO:0043486 "histone exchange" evidence=ISS] [GO:0045190 "isotype
switching" evidence=ISS] [GO:0045739 "positive regulation of DNA
repair" evidence=ISS] [GO:0045900 "negative regulation of
translational elongation" evidence=ISS] [GO:0070534 "protein
K63-linked ubiquitination" evidence=ISS] [GO:0070535 "histone H2A
K63-linked ubiquitination" evidence=ISS] [GO:0070936 "protein
K48-linked ubiquitination" evidence=ISS] InterPro:IPR001841
InterPro:IPR000253 InterPro:IPR008984 InterPro:IPR017335
Pfam:PF00498 Pfam:PF13639 PIRSF:PIRSF037950 PROSITE:PS50006
PROSITE:PS50089 SMART:SM00184 SMART:SM00240 UniPathway:UPA00143
Prosite:PS00518 GO:GO:0005634 GO:GO:0042803 GO:GO:0051301
GO:GO:0007067 GO:GO:0007286 GO:GO:0046872 GO:GO:0008270
GO:GO:0003682 Gene3D:2.60.200.20 SUPFAM:SSF49879 GO:GO:0010212
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0006511 GO:GO:0043486
GO:GO:0045190 GO:GO:0004842 GO:GO:0030496 GO:GO:0042393
GO:GO:0045739 GO:GO:0000151 InterPro:IPR017907 GO:GO:0070936
GO:GO:0000781 GO:GO:0006303 GO:GO:0033523 GO:GO:0045900
GO:GO:0035861 GO:GO:0070535 HSSP:O76064 HOVERGEN:HBG023954
KO:K10667 CTD:9025 PANTHER:PTHR15067:SF3 EMBL:CR861266
RefSeq:NP_001126963.1 UniGene:Pab.1586 ProteinModelPortal:Q5R4I2
SMR:Q5R4I2 GeneID:100173982 KEGG:pon:100173982 InParanoid:Q5R4I2
Uniprot:Q5R4I2
Length = 486
Score = 105 (42.0 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 26/95 (27%), Positives = 46/95 (48%)
Query: 36 LREFYAIIYPSLRQLESEFSEL--EDNSKRDQCSEISSRKRVEERRKLSD-KDLDRND-E 91
L+E +A++ L + + +F + N + +Q E + + ++ LS D+ N+ +
Sbjct: 345 LQEHWALM-EELNRSKKDFEAIIQAKNKELEQTKEEKEKVQAQKEEVLSHMNDVLENELQ 403
Query: 92 CGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
C IC E + V NC HS C C ++W R C
Sbjct: 404 CIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIEC 438
>UNIPROTKB|Q7ZX20 [details] [associations]
symbol:rnf8-a "E3 ubiquitin-protein ligase RNF8-A"
species:8355 "Xenopus laevis" [GO:0000151 "ubiquitin ligase
complex" evidence=ISS] [GO:0000781 "chromosome, telomeric region"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006302 "double-strand
break repair" evidence=ISS] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0007286 "spermatid development" evidence=ISS] [GO:0008270 "zinc
ion binding" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0033522 "histone H2A ubiquitination"
evidence=ISS] [GO:0033523 "histone H2B ubiquitination"
evidence=ISS] [GO:0035861 "site of double-strand break"
evidence=ISS] [GO:0042393 "histone binding" evidence=ISS]
[GO:0042803 "protein homodimerization activity" evidence=ISS]
[GO:0043486 "histone exchange" evidence=ISS] [GO:0045190 "isotype
switching" evidence=ISS] [GO:0045739 "positive regulation of DNA
repair" evidence=ISS] [GO:0045900 "negative regulation of
translational elongation" evidence=ISS] [GO:0070534 "protein
K63-linked ubiquitination" evidence=ISS] [GO:0070535 "histone H2A
K63-linked ubiquitination" evidence=ISS] [GO:0070936 "protein
K48-linked ubiquitination" evidence=ISS] InterPro:IPR001841
InterPro:IPR000253 InterPro:IPR008984 InterPro:IPR017335
Pfam:PF00498 PIRSF:PIRSF037950 PROSITE:PS50006 PROSITE:PS50089
SMART:SM00184 SMART:SM00240 UniPathway:UPA00143 Prosite:PS00518
GO:GO:0005634 GO:GO:0042803 GO:GO:0051301 GO:GO:0007286
GO:GO:0046872 GO:GO:0008270 GO:GO:0003682 Gene3D:2.60.200.20
SUPFAM:SSF49879 GO:GO:0010212 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0006511 GO:GO:0043486 GO:GO:0045190 GO:GO:0004842
GO:GO:0042393 GO:GO:0045739 GO:GO:0000151 InterPro:IPR017907
GO:GO:0070936 GO:GO:0000781 GO:GO:0006303 GO:GO:0033523
GO:GO:0045900 GO:GO:0035861 GO:GO:0070535 EMBL:BC046256
RefSeq:NP_001080384.1 UniGene:Xl.75515 HSSP:O76064
ProteinModelPortal:Q7ZX20 SMR:Q7ZX20 PRIDE:Q7ZX20 GeneID:380076
KEGG:xla:380076 CTD:380076 Xenbase:XB-GENE-6254223
HOVERGEN:HBG023954 KO:K10667 Uniprot:Q7ZX20
Length = 540
Score = 105 (42.0 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 24/101 (23%), Positives = 46/101 (45%)
Query: 30 KERKATLREFYAIIYPSLRQLESEFSELED--NSKRDQCSEISSRKRVEERRKLSDKD-- 85
KE+ A + + + L + +++F ++ + N + + E + ++ L+ +
Sbjct: 316 KEQLAQALQEHTQLMQELNRSKNDFEQIIEAKNKELQETKEEKEKVFAQKEEVLNHMNDV 375
Query: 86 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
LD +C IC E+ + V NC HS C C W R + C
Sbjct: 376 LDNELQCIICSEHFIEAVTLNCAHSFCSYCIKSWKKRKEEC 416
>UNIPROTKB|E2RKD8 [details] [associations]
symbol:RNF8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0070936 "protein K48-linked ubiquitination"
evidence=IEA] [GO:0070535 "histone H2A K63-linked ubiquitination"
evidence=IEA] [GO:0051865 "protein autoubiquitination"
evidence=IEA] [GO:0045900 "negative regulation of translational
elongation" evidence=IEA] [GO:0045739 "positive regulation of DNA
repair" evidence=IEA] [GO:0045190 "isotype switching" evidence=IEA]
[GO:0043486 "histone exchange" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=IEA] [GO:0033523 "histone H2B ubiquitination"
evidence=IEA] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA] [GO:0010212 "response to ionizing radiation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000781
"chromosome, telomeric region" evidence=IEA] [GO:0000151 "ubiquitin
ligase complex" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000253
InterPro:IPR008984 InterPro:IPR017335 Pfam:PF00498 Pfam:PF13639
PIRSF:PIRSF037950 PROSITE:PS50006 PROSITE:PS50089 SMART:SM00184
SMART:SM00240 Prosite:PS00518 GO:GO:0005634 GO:GO:0051301
GO:GO:0046872 GO:GO:0008270 GO:GO:0003682 Gene3D:2.60.200.20
SUPFAM:SSF49879 GO:GO:0010212 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0006302 GO:GO:0016881 GO:GO:0045739 GO:GO:0000151
InterPro:IPR017907 GO:GO:0033523 GeneTree:ENSGT00400000022349
PANTHER:PTHR15067:SF3 EMBL:AAEX03008298 Ensembl:ENSCAFT00000002283
Uniprot:E2RKD8
Length = 487
Score = 104 (41.7 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 25/101 (24%), Positives = 46/101 (45%)
Query: 30 KERKATLREFYAIIYPSLRQLESEFSEL--EDNSKRDQCSEISSRKRVEERRKLSD-KDL 86
K++ A + + + L + + +F + N + +Q E + + ++ LS D+
Sbjct: 339 KQQLAQALQEHRALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHVNDV 398
Query: 87 DRND-ECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
N+ +C IC E + V NC HS C C ++W R C
Sbjct: 399 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKVEC 439
>UNIPROTKB|J9P6M8 [details] [associations]
symbol:RNF8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051301 "cell division" evidence=IEA]
[GO:0016881 "acid-amino acid ligase activity" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000253 InterPro:IPR008984
InterPro:IPR017335 Pfam:PF00498 Pfam:PF13639 PIRSF:PIRSF037950
PROSITE:PS50006 PROSITE:PS50089 SMART:SM00184 SMART:SM00240
Prosite:PS00518 GO:GO:0005634 GO:GO:0051301 GO:GO:0046872
GO:GO:0008270 GO:GO:0006974 GO:GO:0016567 Gene3D:2.60.200.20
SUPFAM:SSF49879 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0016881
InterPro:IPR017907 KO:K10667 CTD:9025 GeneTree:ENSGT00400000022349
OMA:EVTEEDW PANTHER:PTHR15067:SF3 EMBL:AAEX03008298
RefSeq:XP_864730.1 ProteinModelPortal:J9P6M8
Ensembl:ENSCAFT00000047572 GeneID:481775 KEGG:cfa:481775
Uniprot:J9P6M8
Length = 487
Score = 104 (41.7 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 25/101 (24%), Positives = 46/101 (45%)
Query: 30 KERKATLREFYAIIYPSLRQLESEFSEL--EDNSKRDQCSEISSRKRVEERRKLSD-KDL 86
K++ A + + + L + + +F + N + +Q E + + ++ LS D+
Sbjct: 339 KQQLAQALQEHRALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHVNDV 398
Query: 87 DRND-ECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
N+ +C IC E + V NC HS C C ++W R C
Sbjct: 399 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKVEC 439
>MGI|MGI:1929069 [details] [associations]
symbol:Rnf8 "ring finger protein 8" species:10090 "Mus
musculus" [GO:0000151 "ubiquitin ligase complex" evidence=ISO]
[GO:0000781 "chromosome, telomeric region" evidence=IDA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0004842
"ubiquitin-protein ligase activity" evidence=ISO;IMP] [GO:0005634
"nucleus" evidence=ISO] [GO:0005694 "chromosome" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006302 "double-strand
break repair" evidence=ISO] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IMP] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO;IDA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0007067 "mitosis"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IMP]
[GO:0008270 "zinc ion binding" evidence=ISO] [GO:0010212 "response
to ionizing radiation" evidence=ISO] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0016881 "acid-amino acid ligase activity" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0033522 "histone H2A ubiquitination" evidence=ISO;IMP]
[GO:0033523 "histone H2B ubiquitination" evidence=IMP] [GO:0035861
"site of double-strand break" evidence=ISO] [GO:0042393 "histone
binding" evidence=ISO;IMP] [GO:0042803 "protein homodimerization
activity" evidence=ISO] [GO:0043486 "histone exchange"
evidence=IMP] [GO:0045190 "isotype switching" evidence=IMP]
[GO:0045739 "positive regulation of DNA repair" evidence=ISO]
[GO:0045900 "negative regulation of translational elongation"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0051865 "protein
autoubiquitination" evidence=ISO] [GO:0070534 "protein K63-linked
ubiquitination" evidence=ISO] [GO:0070535 "histone H2A K63-linked
ubiquitination" evidence=ISO] [GO:0070936 "protein K48-linked
ubiquitination" evidence=ISO] InterPro:IPR001841 InterPro:IPR000253
InterPro:IPR008984 InterPro:IPR017335 Pfam:PF00498
PIRSF:PIRSF037950 PROSITE:PS50006 PROSITE:PS50089 SMART:SM00184
SMART:SM00240 UniPathway:UPA00143 MGI:MGI:1929069 Prosite:PS00518
GO:GO:0005634 GO:GO:0042803 GO:GO:0051301 GO:GO:0007067
GO:GO:0007286 GO:GO:0046872 GO:GO:0008270 GO:GO:0003682
Gene3D:2.60.200.20 SUPFAM:SSF49879 GO:GO:0010212 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0006511 GO:GO:0043486 GO:GO:0045190
GO:GO:0004842 GO:GO:0030496 GO:GO:0042393 GO:GO:0045739
GO:GO:0000151 InterPro:IPR017907 GO:GO:0070936 GO:GO:0000781
GO:GO:0006303 GO:GO:0033523 GO:GO:0045900 GO:GO:0035861
GermOnline:ENSMUSG00000024019 GO:GO:0070535 HOVERGEN:HBG023954
KO:K10667 CTD:9025 GeneTree:ENSGT00400000022349
HOGENOM:HOG000154169 PANTHER:PTHR15067:SF3 EMBL:AK076180
EMBL:AK147168 EMBL:CT010295 EMBL:BC021778 EMBL:AJ242721
IPI:IPI00551150 RefSeq:NP_067394.1 UniGene:Mm.305994
ProteinModelPortal:Q8VC56 SMR:Q8VC56 DIP:DIP-59448N
PhosphoSite:Q8VC56 PRIDE:Q8VC56 Ensembl:ENSMUST00000024817
GeneID:58230 KEGG:mmu:58230 UCSC:uc008btf.1 NextBio:314253
Bgee:Q8VC56 CleanEx:MM_RNF8 Genevestigator:Q8VC56 Uniprot:Q8VC56
Length = 488
Score = 103 (41.3 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 27/95 (28%), Positives = 45/95 (47%)
Query: 36 LREFYAIIYPSLRQLESEFSEL--EDNSKRDQCSEISSRKRVEERRKLSD-KDLDRND-E 91
L+E A++ L + +F ++ N + +Q E + + ++ LS DL N+ +
Sbjct: 347 LQEHQALM-EELNCSKKDFEKIIQAKNKELEQTKEEKDKVQAQKEEVLSHMNDLLENELQ 405
Query: 92 CGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
C IC E + V NC HS C C ++W R C
Sbjct: 406 CIICSEYFIEAVTLNCAHSFCSFCINEWMKRKVEC 440
>UNIPROTKB|Q6LFN2 [details] [associations]
symbol:PFF0165c "RING finger protein PFF0165c"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR001841
PROSITE:PS50089 SMART:SM00184 Prosite:PS00518 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 HSSP:P25916 eggNOG:NOG263074 EMBL:AL844505
RefSeq:XP_966024.1 ProteinModelPortal:Q6LFN2 IntAct:Q6LFN2
MINT:MINT-1553359 EnsemblProtists:PFF0165c:mRNA GeneID:3885786
KEGG:pfa:PFF0165c EuPathDB:PlasmoDB:PF3D7_0603400
HOGENOM:HOG000281419 ProtClustDB:CLSZ2497371 Uniprot:Q6LFN2
Length = 1103
Score = 107 (42.7 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 32/109 (29%), Positives = 55/109 (50%)
Query: 31 ERKATLREFYAIIYPSLRQLESEFSELE-DNSK-RDQCS-EISSRKRVEER-RKLSDKDL 86
++K L + +Y ++L +LE +NS +++ S EI + K + + K SD L
Sbjct: 977 QKKIELTDILKNVYDCNKKLIGHCQDLEKENSTLQNKLSNEIKNSKMLSKNLSKNSDDHL 1036
Query: 87 --DRNDE------CGICMENCTKMVLPNCGHSLCVNC-FHDWNARSQSC 126
+ N+E C +CMEN ++ CGH C NC F++ R++ C
Sbjct: 1037 LIEENNELRRRLICSVCMENFRNYIIIKCGHIYCNNCIFNNLKTRNRKC 1085
>UNIPROTKB|Q6NRG0 [details] [associations]
symbol:rnf8-b "E3 ubiquitin-protein ligase RNF8-B"
species:8355 "Xenopus laevis" [GO:0000151 "ubiquitin ligase
complex" evidence=ISS] [GO:0000781 "chromosome, telomeric region"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006302 "double-strand
break repair" evidence=ISS] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0007286 "spermatid development" evidence=ISS] [GO:0008270 "zinc
ion binding" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0033522 "histone H2A ubiquitination"
evidence=ISS] [GO:0033523 "histone H2B ubiquitination"
evidence=ISS] [GO:0035861 "site of double-strand break"
evidence=ISS] [GO:0042393 "histone binding" evidence=ISS]
[GO:0042803 "protein homodimerization activity" evidence=ISS]
[GO:0043486 "histone exchange" evidence=ISS] [GO:0045190 "isotype
switching" evidence=ISS] [GO:0045739 "positive regulation of DNA
repair" evidence=ISS] [GO:0045900 "negative regulation of
translational elongation" evidence=ISS] [GO:0070534 "protein
K63-linked ubiquitination" evidence=ISS] [GO:0070535 "histone H2A
K63-linked ubiquitination" evidence=ISS] [GO:0070936 "protein
K48-linked ubiquitination" evidence=ISS] InterPro:IPR001841
InterPro:IPR000253 InterPro:IPR008984 InterPro:IPR017335
Pfam:PF00498 PIRSF:PIRSF037950 PROSITE:PS50006 PROSITE:PS50089
SMART:SM00184 SMART:SM00240 UniPathway:UPA00143 Prosite:PS00518
GO:GO:0005634 GO:GO:0042803 GO:GO:0051301 GO:GO:0007286
GO:GO:0046872 GO:GO:0008270 GO:GO:0003682 Gene3D:2.60.200.20
SUPFAM:SSF49879 GO:GO:0010212 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0006511 GO:GO:0043486 GO:GO:0045190 GO:GO:0004842
GO:GO:0042393 GO:GO:0045739 GO:GO:0000151 InterPro:IPR017907
GO:GO:0070936 GO:GO:0000781 GO:GO:0006303 GO:GO:0033523
GO:GO:0045900 GO:GO:0035861 GO:GO:0070535 HSSP:O76064
HOVERGEN:HBG023954 KO:K10667 EMBL:BC070792 RefSeq:NP_001084862.1
UniGene:Xl.4442 ProteinModelPortal:Q6NRG0 SMR:Q6NRG0 GeneID:431911
KEGG:xla:431911 CTD:431911 Xenbase:XB-GENE-5914276 Uniprot:Q6NRG0
Length = 532
Score = 103 (41.3 bits), Expect = 0.00011, P = 0.00011
Identities = 24/101 (23%), Positives = 45/101 (44%)
Query: 30 KERKATLREFYAIIYPSLRQLESEFSEL--EDNSKRDQCSEISSRKRVEERRKLSDKD-- 85
KE+ A + + + L + +++F ++ N + + E + ++ L+ +
Sbjct: 311 KEQLAQALQEHTQLMQELNRNKNDFEQIIQAKNKELQETKEEKEKVCAQKEEVLNHMNDV 370
Query: 86 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
LD +C IC E+ + V NC HS C C W R + C
Sbjct: 371 LDNELQCIICSEHFIEAVTLNCAHSFCSYCIKSWRKRKEEC 411
>UNIPROTKB|F1RVS2 [details] [associations]
symbol:LOC100153408 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0051301 "cell division" evidence=IEA] [GO:0016881
"acid-amino acid ligase activity" evidence=IEA] [GO:0016567
"protein ubiquitination" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000253 InterPro:IPR008984
InterPro:IPR017335 Pfam:PF00498 Pfam:PF13639 PIRSF:PIRSF037950
PROSITE:PS50006 PROSITE:PS50089 SMART:SM00184 SMART:SM00240
Prosite:PS00518 GO:GO:0005634 GO:GO:0051301 GO:GO:0046872
GO:GO:0008270 GO:GO:0006974 GO:GO:0016567 Gene3D:2.60.200.20
SUPFAM:SSF49879 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0016881
InterPro:IPR017907 GeneTree:ENSGT00400000022349
PANTHER:PTHR15067:SF3 EMBL:CU467025 ProteinModelPortal:F1RVS2
Ensembl:ENSSSCT00000001757 ArrayExpress:F1RVS2 Uniprot:F1RVS2
Length = 487
Score = 102 (41.0 bits), Expect = 0.00012, P = 0.00012
Identities = 25/101 (24%), Positives = 45/101 (44%)
Query: 30 KERKATLREFYAIIYPSLRQLESEFSEL--EDNSKRDQCSEISSRKRVEERRKLSD-KDL 86
K++ A + + + L + +F + N + +Q E + + ++ LS D+
Sbjct: 339 KQQLAQALQEHRALMEELNRSRKDFEAIIQAKNKELEQTKEEKEKVQAQKEEVLSHMNDV 398
Query: 87 DRND-ECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
N+ +C IC E + V NC HS C C ++W R C
Sbjct: 399 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKVEC 439
>UNIPROTKB|I3L6W2 [details] [associations]
symbol:LOC100153408 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0051301 "cell division" evidence=IEA] [GO:0016881
"acid-amino acid ligase activity" evidence=IEA] [GO:0016567
"protein ubiquitination" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000253 InterPro:IPR008984
InterPro:IPR017335 Pfam:PF00498 Pfam:PF13639 PIRSF:PIRSF037950
PROSITE:PS50006 PROSITE:PS50089 SMART:SM00184 SMART:SM00240
Prosite:PS00518 GO:GO:0005634 GO:GO:0051301 GO:GO:0046872
GO:GO:0008270 GO:GO:0006974 GO:GO:0016567 Gene3D:2.60.200.20
SUPFAM:SSF49879 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0016881
InterPro:IPR017907 GeneTree:ENSGT00400000022349 OMA:EVTEEDW
PANTHER:PTHR15067:SF3 EMBL:CU467025 Ensembl:ENSSSCT00000028776
Uniprot:I3L6W2
Length = 488
Score = 102 (41.0 bits), Expect = 0.00012, P = 0.00012
Identities = 25/101 (24%), Positives = 45/101 (44%)
Query: 30 KERKATLREFYAIIYPSLRQLESEFSEL--EDNSKRDQCSEISSRKRVEERRKLSD-KDL 86
K++ A + + + L + +F + N + +Q E + + ++ LS D+
Sbjct: 339 KQQLAQALQEHRALMEELNRSRKDFEAIIQAKNKELEQTKEEKEKVQAQKEEVLSHMNDV 398
Query: 87 DRND-ECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
N+ +C IC E + V NC HS C C ++W R C
Sbjct: 399 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKVEC 439
>POMBASE|SPBC17A3.10 [details] [associations]
symbol:pas4 "peroxisomal ubiquitin-protein ligase E3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004842
"ubiquitin-protein ligase activity" evidence=ISM] [GO:0005778
"peroxisomal membrane" evidence=ISO] [GO:0005779 "integral to
peroxisomal membrane" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IDA] [GO:0007031 "peroxisome organization"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=ISM]
[GO:0016558 "protein import into peroxisome matrix" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=ISM]
InterPro:IPR001841 InterPro:IPR025654 PROSITE:PS50089 SMART:SM00184
PomBase:SPBC17A3.10 Prosite:PS00518 GO:GO:0005783 GO:GO:0046872
EMBL:CU329671 GO:GO:0008270 GO:GO:0007031 GenomeReviews:CU329671_GR
GO:GO:0005779 GO:GO:0005778 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0016558 GO:GO:0004842 InterPro:IPR017907 EMBL:AB004537
eggNOG:COG5574 KO:K13346 PANTHER:PTHR23350 PIR:T39702
RefSeq:NP_595592.1 ProteinModelPortal:Q9UUF0
EnsemblFungi:SPBC17A3.10.1 GeneID:2539774 KEGG:spo:SPBC17A3.10
OrthoDB:EOG44TSJ5 NextBio:20800924 Uniprot:Q9UUF0
Length = 306
Score = 99 (39.9 bits), Expect = 0.00012, P = 0.00012
Identities = 29/122 (23%), Positives = 55/122 (45%)
Query: 7 CVIETKLFVNVQVYVDGMPALSSKERKATLREFYAIIYPSLRQLESEFSELEDNSKRDQ- 65
C ++L + ++ Y+ + ++ +E+K L ++ R + S NS DQ
Sbjct: 177 CATVSQLLLGLK-YIS-LDEINPEEKKKVLT---LLLLLGSRLIASILQH--SNSYFDQH 229
Query: 66 -CSEISSRKRVEERRKLSDKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQ 124
S I+ + +E++ KL + N +C +CME CGH C +C + W ++
Sbjct: 230 TISSITDERDLEDKNKLPFIP-EGNRKCSLCMEFIHCPAATECGHIFCWSCINGWTSKKS 288
Query: 125 SC 126
C
Sbjct: 289 EC 290
>UNIPROTKB|Q2HJ46 [details] [associations]
symbol:RNF8 "E3 ubiquitin-protein ligase RNF8" species:9913
"Bos taurus" [GO:0045190 "isotype switching" evidence=ISS]
[GO:0033522 "histone H2A ubiquitination" evidence=ISS] [GO:0035861
"site of double-strand break" evidence=ISS] [GO:0070936 "protein
K48-linked ubiquitination" evidence=ISS] [GO:0045900 "negative
regulation of translational elongation" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0042803 "protein homodimerization activity" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=ISS] [GO:0043486 "histone
exchange" evidence=ISS] [GO:0007286 "spermatid development"
evidence=ISS] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=ISS] [GO:0070535 "histone H2A
K63-linked ubiquitination" evidence=ISS] [GO:0006974 "response to
DNA damage stimulus" evidence=ISS] [GO:0000781 "chromosome,
telomeric region" evidence=ISS] [GO:0070534 "protein K63-linked
ubiquitination" evidence=ISS] [GO:0000151 "ubiquitin ligase
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS]
[GO:0045739 "positive regulation of DNA repair" evidence=ISS]
[GO:0006302 "double-strand break repair" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0033523 "histone H2B ubiquitination"
evidence=ISS] [GO:0042393 "histone binding" evidence=ISS]
[GO:0030496 "midbody" evidence=IEA] [GO:0051865 "protein
autoubiquitination" evidence=IEA] [GO:0031625 "ubiquitin protein
ligase binding" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000253 InterPro:IPR008984
InterPro:IPR017335 Pfam:PF00498 Pfam:PF13639 PIRSF:PIRSF037950
PROSITE:PS50006 PROSITE:PS50089 SMART:SM00184 SMART:SM00240
UniPathway:UPA00143 Prosite:PS00518 GO:GO:0005634 GO:GO:0042803
GO:GO:0051301 GO:GO:0007067 GO:GO:0007286 GO:GO:0046872
GO:GO:0008270 GO:GO:0003682 Gene3D:2.60.200.20 SUPFAM:SSF49879
GO:GO:0010212 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0006511
GO:GO:0043486 GO:GO:0045190 GO:GO:0004842 GO:GO:0030496
GO:GO:0042393 GO:GO:0045739 GO:GO:0000151 InterPro:IPR017907
GO:GO:0070936 GO:GO:0000781 GO:GO:0006303 HSSP:P25916 GO:GO:0033523
GO:GO:0045900 GO:GO:0035861 GO:GO:0070535 HOVERGEN:HBG023954
KO:K10667 EMBL:BC113317 IPI:IPI00721755 RefSeq:NP_001039681.1
UniGene:Bt.41339 ProteinModelPortal:Q2HJ46 SMR:Q2HJ46 STRING:Q2HJ46
PRIDE:Q2HJ46 Ensembl:ENSBTAT00000010959 GeneID:515933
KEGG:bta:515933 CTD:9025 eggNOG:NOG242257
GeneTree:ENSGT00400000022349 HOGENOM:HOG000154169 InParanoid:Q2HJ46
OMA:EVTEEDW OrthoDB:EOG4TF0KP NextBio:20872060
PANTHER:PTHR15067:SF3 Uniprot:Q2HJ46
Length = 487
Score = 101 (40.6 bits), Expect = 0.00015, P = 0.00015
Identities = 25/101 (24%), Positives = 45/101 (44%)
Query: 30 KERKATLREFYAIIYPSLRQLESEFSEL--EDNSKRDQCSEISSRKRVEERRKLSD-KDL 86
K++ A + Y + L + + F + + + +Q E + + ++ LS D+
Sbjct: 339 KQQLAQALQEYRSLVEELNRSKKNFEAIIQAKDKELEQTKEEKEKVQAQKEEVLSHMNDV 398
Query: 87 DRND-ECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
N+ +C IC E + V NC HS C C ++W R C
Sbjct: 399 LENELQCIICSEYFVEAVTLNCAHSFCSYCINEWMKRKVEC 439
>ZFIN|ZDB-GENE-040426-849 [details] [associations]
symbol:rnf8 "ring finger protein 8, E3 ubiquitin
protein ligase" species:7955 "Danio rerio" [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISS] [GO:0016881 "acid-amino acid ligase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;ISS] [GO:0051301 "cell division" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] [GO:0000781
"chromosome, telomeric region" evidence=ISS] [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=ISS] [GO:0006302 "double-strand break repair"
evidence=ISS] [GO:0043486 "histone exchange" evidence=ISS]
[GO:0045190 "isotype switching" evidence=ISS] [GO:0042393 "histone
binding" evidence=ISS] [GO:0045739 "positive regulation of DNA
repair" evidence=ISS] [GO:0042803 "protein homodimerization
activity" evidence=ISS] [GO:0070534 "protein K63-linked
ubiquitination" evidence=ISS] [GO:0070936 "protein K48-linked
ubiquitination" evidence=ISS] [GO:0000151 "ubiquitin ligase
complex" evidence=ISS] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0007286 "spermatid development"
evidence=ISS] [GO:0035861 "site of double-strand break"
evidence=ISS] [GO:0045900 "negative regulation of translational
elongation" evidence=ISS] [GO:0070535 "histone H2A K63-linked
ubiquitination" evidence=ISS] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=ISS] [GO:0033522
"histone H2A ubiquitination" evidence=ISS] [GO:0033523 "histone H2B
ubiquitination" evidence=ISS] [GO:0016874 "ligase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] InterPro:IPR001841 InterPro:IPR000253
InterPro:IPR008984 InterPro:IPR017335 Pfam:PF00498
PIRSF:PIRSF037950 PROSITE:PS50006 PROSITE:PS50089 SMART:SM00184
SMART:SM00240 Prosite:PS00518 ZFIN:ZDB-GENE-040426-849
GO:GO:0005634 GO:GO:0051301 GO:GO:0046872 GO:GO:0008270
GO:GO:0006974 GO:GO:0016567 Gene3D:2.60.200.20 SUPFAM:SSF49879
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0016881
InterPro:IPR017907 GeneTree:ENSGT00400000022349 EMBL:CU660013
Ensembl:ENSDART00000151429 Bgee:I3IRX0 Uniprot:I3IRX0
Length = 531
Score = 101 (40.6 bits), Expect = 0.00017, P = 0.00017
Identities = 23/97 (23%), Positives = 42/97 (43%)
Query: 30 KERKATLREFYAIIYPSLRQLESEFSELEDNSKRDQCSEISSRKRVEERRKLSDKDLDRN 89
KE + + E L+++ ELE + + ++ + V + ++ + +L
Sbjct: 334 KEHRKVIEELKHARQGFKEVLQAKDKELEVTKEEKEKAKAQKEEVVTQMTEVLESEL--- 390
Query: 90 DECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
+C IC E + V NC HS C +C +W R C
Sbjct: 391 -QCSICSELFIEAVTLNCAHSFCQHCISEWRNRKDKC 426
>UNIPROTKB|E9PN08 [details] [associations]
symbol:RNF5 "E3 ubiquitin-protein ligase RNF5" species:9606
"Homo sapiens" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 PROSITE:PS50089 SMART:SM00184 Prosite:PS00518
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 EMBL:BX284686 HGNC:HGNC:10068 IPI:IPI00514241
ProteinModelPortal:E9PN08 SMR:E9PN08 Ensembl:ENST00000472060
ArrayExpress:E9PN08 Bgee:E9PN08 Uniprot:E9PN08
Length = 91
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 91 ECGICMENCTKMVLPNCGHSLCVNCFHDW 119
EC IC+E + V+ CGH C C H W
Sbjct: 26 ECNICLETAREAVVSVCGHLYCWPCLHQW 54
>DICTYBASE|DDB_G0289719 [details] [associations]
symbol:DDB_G0289719 "SFRS2-interacting protein"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 dictyBase:DDB_G0289719 Prosite:PS00518 GO:GO:0046872
GO:GO:0008270 EMBL:AAFI02000148 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 RefSeq:XP_636078.1
ProteinModelPortal:Q54H40 EnsemblProtists:DDB0188541 GeneID:8627288
KEGG:ddi:DDB_G0289719 eggNOG:KOG4430 InParanoid:Q54H40 OMA:ERESEHA
Uniprot:Q54H40
Length = 1419
Score = 100 (40.3 bits), Expect = 0.00072, P = 0.00072
Identities = 20/79 (25%), Positives = 39/79 (49%)
Query: 51 ESEFSELEDNSKRDQCSEISSRKRVEERRKLSDKDLDRNDECGICMENCTK---MVLPNC 107
E E E E+ K+++ E ++ EER + +K+ + + +C IC + K + C
Sbjct: 813 EKERKEKEEREKQEKEREEKEKQEKEERER-KEKEENESIDCIICTDTIKKEDISTICGC 871
Query: 108 GHSLCVNCFHDWNARSQSC 126
H C C +W+ ++ +C
Sbjct: 872 THKFCFECILEWSKQTNTC 890
>FB|FBgn0035233 [details] [associations]
symbol:Pex10 "Peroxin 10" species:7227 "Drosophila
melanogaster" [GO:0007031 "peroxisome organization" evidence=ISS]
[GO:0016558 "protein import into peroxisome matrix" evidence=IEA]
[GO:0005779 "integral to peroxisomal membrane" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0048137
"spermatocyte division" evidence=IMP] [GO:0007286 "spermatid
development" evidence=IMP] [GO:0007285 "primary spermatocyte
growth" evidence=IMP] [GO:0007112 "male meiosis cytokinesis"
evidence=IMP] InterPro:IPR001841 InterPro:IPR025654 PROSITE:PS50089
SMART:SM00184 InterPro:IPR006845 Prosite:PS00518 EMBL:AE014296
GO:GO:0007286 GO:GO:0046872 GO:GO:0008270 GO:GO:0005779
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0016558 GO:GO:0007112
InterPro:IPR017907 GO:GO:0048137 GO:GO:0007285 eggNOG:COG5574
KO:K13346 OMA:FRQRQRA PANTHER:PTHR23350 Pfam:PF04757 CTD:5192
GeneTree:ENSGT00510000048446 EMBL:AY069290 RefSeq:NP_647624.1
UniGene:Dm.2194 SMR:Q9W0D7 IntAct:Q9W0D7 MINT:MINT-1647351
EnsemblMetazoa:FBtr0072743 EnsemblMetazoa:FBtr0333397 GeneID:38182
KEGG:dme:Dmel_CG7864 UCSC:CG7864-RA FlyBase:FBgn0035233
InParanoid:Q9W0D7 OrthoDB:EOG4ZS7K2 GenomeRNAi:38182 NextBio:807389
Uniprot:Q9W0D7
Length = 299
Score = 96 (38.9 bits), Expect = 0.0010, P = 0.0010
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 62 KRDQCSEISSRKRVEERRKLSDKDLDRND-ECGICMENCTKMVLPNCGHSLCVNCFHDWN 120
KR Q I + +R S KD+D N +C +C+E + L CGH C +C +W
Sbjct: 215 KRQQLESIKQAGKNFLQRSSSTKDVDPNTPQCILCLEPRSDSSLTPCGHIFCWSCLLEWL 274
Query: 121 ARSQSC 126
C
Sbjct: 275 EERDEC 280
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.135 0.425 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 135 135 0.00091 102 3 11 22 0.36 31
30 0.44 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 32
No. of states in DFA: 595 (63 KB)
Total size of DFA: 154 KB (2092 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.22u 0.11s 18.33t Elapsed: 00:00:01
Total cpu time: 18.22u 0.11s 18.33t Elapsed: 00:00:01
Start: Fri May 10 00:08:03 2013 End: Fri May 10 00:08:04 2013