BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032728
(135 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6IV56|RN141_DANRE RING finger protein 141 OS=Danio rerio GN=rnf141 PE=2 SV=2
Length = 222
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 84 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
K L +EC ICM+ ++LP C HS C C W+ +S++C
Sbjct: 139 KQLTDEEECCICMDGKADLILP-CAHSFCQKCIDKWSGQSRNC 180
>sp|Q5ZM74|RN141_CHICK RING finger protein 141 OS=Gallus gallus GN=RNF141 PE=2 SV=1
Length = 230
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 90 DECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
DEC ICM+ ++LP C HS C C W+ R +SC
Sbjct: 153 DECCICMDGRVDLILP-CAHSFCQKCIDKWSDRHRSC 188
>sp|Q99MB7|RN141_MOUSE RING finger protein 141 OS=Mus musculus GN=Rnf141 PE=2 SV=2
Length = 230
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 84 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
K L +EC ICM+ ++LP C HS C C W+ R ++C
Sbjct: 147 KQLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNC 188
>sp|Q5R7K8|RN141_PONAB RING finger protein 141 OS=Pongo abelii GN=RNF141 PE=2 SV=1
Length = 230
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 84 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
K L +EC ICM+ ++LP C HS C C W+ R ++C
Sbjct: 147 KQLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNC 188
>sp|Q8WVD5|RN141_HUMAN RING finger protein 141 OS=Homo sapiens GN=RNF141 PE=1 SV=1
Length = 230
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 84 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
K L +EC ICM+ ++LP C HS C C W+ R ++C
Sbjct: 147 KQLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNC 188
>sp|Q6IV57|RN141_RAT RING finger protein 141 OS=Rattus norvegicus GN=Rnf141 PE=2 SV=1
Length = 230
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 84 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
K L +EC ICM+ ++LP C HS C C W+ R ++C
Sbjct: 147 KQLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNC 188
>sp|Q32L15|RN141_BOVIN RING finger protein 141 OS=Bos taurus GN=RNF141 PE=2 SV=1
Length = 230
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 84 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
K L +EC ICM+ ++LP C HS C C W+ R ++C
Sbjct: 147 KQLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNC 188
>sp|Q2XNS1|RN141_CANFA RING finger protein 141 OS=Canis familiaris GN=RNF141 PE=2 SV=1
Length = 231
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 84 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
K L +EC ICM+ ++LP C HS C C W+ R ++C
Sbjct: 148 KQLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNC 189
>sp|Q75CC8|HRD1_ASHGO ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=HRD1 PE=3 SV=2
Length = 575
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 13/69 (18%)
Query: 70 SSRKRVEERRKLSDKDLDRNDE-CGICMEN------CTKM-----VLPNCGHSLCVNCFH 117
+++K E+ +S++ LD D C ICM++ TKM +LP CGH L C
Sbjct: 297 NNKKLYEKLSDVSEEQLDDTDSMCIICMDDMLPTTETTKMNRRAKMLP-CGHMLHFGCLK 355
Query: 118 DWNARSQSC 126
W RSQ+C
Sbjct: 356 SWMERSQTC 364
>sp|O64425|RMA1_ARATH E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1
PE=1 SV=1
Length = 249
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 82 SDKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 119
SD D N +C IC+++ + V+ CGH C C H W
Sbjct: 38 SDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKW 75
>sp|Q7ZX20|RNF8A_XENLA E3 ubiquitin-protein ligase RNF8-A OS=Xenopus laevis GN=rnf8-a PE=2
SV=1
Length = 540
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 86 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
LD +C IC E+ + V NC HS C C W R + C
Sbjct: 376 LDNELQCIICSEHFIEAVTLNCAHSFCSYCIKSWKKRKEEC 416
>sp|Q6NRG0|RNF8B_XENLA E3 ubiquitin-protein ligase RNF8-B OS=Xenopus laevis GN=rnf8-b PE=2
SV=1
Length = 532
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 86 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
LD +C IC E+ + V NC HS C C W R + C
Sbjct: 371 LDNELQCIICSEHFIEAVTLNCAHSFCSYCIKSWRKRKEEC 411
>sp|P22682|CBL_MOUSE E3 ubiquitin-protein ligase CBL OS=Mus musculus GN=Cbl PE=1 SV=3
Length = 913
Score = 36.2 bits (82), Expect = 0.066, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 92 CGICMENCTKMVLPNCGHSLCVNCFHDWN-ARSQSCLF 128
C IC EN + + CGH +C +C W + Q C F
Sbjct: 379 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPF 416
>sp|Q9UUF0|PEX10_SCHPO Peroxisome biogenesis factor 10 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pas4 PE=3 SV=1
Length = 306
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 58 EDNSKRDQ--CSEISSRKRVEERRKLSDKDLDRNDECGICMENCTKMVLPNCGHSLCVNC 115
NS DQ S I+ + +E++ KL + N +C +CME CGH C +C
Sbjct: 221 HSNSYFDQHTISSITDERDLEDKNKLPFIP-EGNRKCSLCMEFIHCPAATECGHIFCWSC 279
Query: 116 FHDWNARSQSC 126
+ W ++ C
Sbjct: 280 INGWTSKKSEC 290
>sp|Q6LFN2|ZNRF1_PLAF7 RING finger protein PFF0165c OS=Plasmodium falciparum (isolate 3D7)
GN=PFF0165c PE=2 SV=1
Length = 1103
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 92 CGICMENCTKMVLPNCGHSLCVNC-FHDWNARSQSC 126
C +CMEN ++ CGH C NC F++ R++ C
Sbjct: 1050 CSVCMENFRNYIIIKCGHIYCNNCIFNNLKTRNRKC 1085
>sp|P22681|CBL_HUMAN E3 ubiquitin-protein ligase CBL OS=Homo sapiens GN=CBL PE=1 SV=2
Length = 906
Score = 35.8 bits (81), Expect = 0.086, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 92 CGICMENCTKMVLPNCGHSLCVNCFHDWN-ARSQSCLF 128
C IC EN + + CGH +C +C W + Q C F
Sbjct: 381 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPF 418
>sp|Q96GF1|RN185_HUMAN E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens GN=RNF185 PE=1
SV=1
Length = 192
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 87 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 119
D EC IC++ V+ CGH C C H W
Sbjct: 34 DSTFECNICLDTAKDAVISLCGHLFCWPCLHQW 66
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 91 ECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
EC IC E + +CGH+ C C +W S+SC
Sbjct: 84 ECPICTEALQRPFTTHCGHTYCYECLLNWLKESKSC 119
>sp|Q6C2R8|RAD5_YARLI DNA repair protein RAD5 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=RAD5 PE=3 SV=1
Length = 1025
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 49 QLESEFSELEDNSKRDQCSEISSRKRVEERRKLSDKDLDRNDECGICMENCTKMVLPNCG 108
QL+S + D+++ C E SS E +L D+ EC IC E+ TK+ + C
Sbjct: 746 QLKSMIQQYNDDTQTSAC-EYSS----EIIAQLQDQSAP--PECPICAEDVTKLAISKCL 798
Query: 109 HSLCVNCFHDWNARSQ 124
H CV+C D N R Q
Sbjct: 799 HMGCVDCLAD-NVRFQ 813
>sp|Q09463|RNF5_CAEEL RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1
Length = 235
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 71 SRKRVEERRKLSDKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 119
++ EE S+KD EC IC++ V+ CGH C C W
Sbjct: 5 TKAPSEEPTSSSNKDESARFECNICLDAAKDAVVSLCGHLFCWPCLSQW 53
>sp|Q568Y3|RN185_RAT E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus GN=Rnf185
PE=2 SV=1
Length = 192
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 87 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 119
D EC IC++ V+ CGH C C H W
Sbjct: 34 DSTFECNICLDTAKDAVISLCGHLFCWPCLHQW 66
>sp|Q5RFK9|RN185_PONAB E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii GN=RNF185 PE=2
SV=1
Length = 192
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 87 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 119
D EC IC++ V+ CGH C C H W
Sbjct: 34 DSTFECNICLDTAKDAVISLCGHLFCWPCLHQW 66
>sp|Q803C1|RNF8_DANRE E3 ubiquitin-protein ligase RNF8 OS=Danio rerio GN=rnf8 PE=2 SV=1
Length = 485
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 91 ECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
+C IC E + V NC HS C +C +W R C
Sbjct: 391 QCSICSELFIEAVTLNCAHSFCQHCISEWRNRKDKC 426
>sp|Q9FGJ6|ATL79_ARATH RING-H2 finger protein ATL79 OS=Arabidopsis thaliana GN=ATL79 PE=2
SV=1
Length = 166
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 43 IYPSLRQLESEFSELEDNSKRDQCSEISSRKRVEERRKLSDKDLDRND-ECGICM----E 97
+Y ++R E ED+ K D + SS SD +L + EC IC+ +
Sbjct: 57 LYAAIRCFLRPTLETEDDHKPDPEAAASSTPTTPTLVYSSDLELAGAEAECAICLSEFEQ 116
Query: 98 NCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
+ VL C H V C H W + SC
Sbjct: 117 GESIQVLEKCQHGFHVKCIHKWLSTRSSC 145
>sp|Q9SJJ7|ATL57_ARATH RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2
SV=1
Length = 237
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 88 RNDECGICM----ENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
RN++C IC+ E T V+P+CGH V+C W + +C
Sbjct: 136 RNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTC 178
>sp|Q5ZIR9|RN185_CHICK E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus GN=RNF185 PE=2
SV=1
Length = 194
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 83 DKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 119
+ + D EC IC++ V+ CGH C C H W
Sbjct: 32 NTNQDNTFECNICLDTAKDAVISLCGHLFCWPCLHQW 68
>sp|Q6GQL0|CBLBA_XENLA E3 ubiquitin-protein ligase CBL-B-A OS=Xenopus laevis GN=cblb-a
PE=2 SV=1
Length = 918
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 92 CGICMENCTKMVLPNCGHSLCVNCFHDWN-ARSQSCLF 128
C IC EN + + CGH +C +C W + Q C F
Sbjct: 384 CKICAENDKDVKIEPCGHLMCTSCLTSWQESDGQGCPF 421
>sp|Q5M807|RNF5_RAT E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2
SV=1
Length = 180
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 91 ECGICMENCTKMVLPNCGHSLCVNCFHDW 119
EC IC+E + V+ CGH C C H W
Sbjct: 26 ECNICLETAREAVVSVCGHLYCWPCLHQW 54
>sp|O35445|RNF5_MOUSE E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1
Length = 180
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 91 ECGICMENCTKMVLPNCGHSLCVNCFHDW 119
EC IC+E + V+ CGH C C H W
Sbjct: 26 ECNICLETAREAVVSVCGHLYCWPCLHQW 54
>sp|Q91YT2|RN185_MOUSE E3 ubiquitin-protein ligase RNF185 OS=Mus musculus GN=Rnf185 PE=2
SV=1
Length = 192
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 87 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 119
D EC IC++ V+ CGH C C H W
Sbjct: 34 DSTFECNICLDTAKDAVISLCGHLFCWPCLHQW 66
>sp|Q3TTA7|CBLB_MOUSE E3 ubiquitin-protein ligase CBL-B OS=Mus musculus GN=Cblb PE=1 SV=3
Length = 982
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 92 CGICMENCTKMVLPNCGHSLCVNCFHDWN-ARSQSCLF 128
C IC EN + + CGH +C +C W + Q C F
Sbjct: 373 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPF 410
>sp|Q13191|CBLB_HUMAN E3 ubiquitin-protein ligase CBL-B OS=Homo sapiens GN=CBLB PE=1 SV=2
Length = 982
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 92 CGICMENCTKMVLPNCGHSLCVNCFHDWN-ARSQSCLF 128
C IC EN + + CGH +C +C W + Q C F
Sbjct: 373 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPF 410
>sp|Q8K4S7|CBLB_RAT E3 ubiquitin-protein ligase CBL-B OS=Rattus norvegicus GN=Cblb PE=2
SV=1
Length = 938
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 92 CGICMENCTKMVLPNCGHSLCVNCFHDWN-ARSQSCLF 128
C IC EN + + CGH +C +C W + Q C F
Sbjct: 373 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPF 410
>sp|Q99942|RNF5_HUMAN E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1
Length = 180
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 91 ECGICMENCTKMVLPNCGHSLCVNCFHDW 119
EC IC+E + V+ CGH C C H W
Sbjct: 26 ECNICLETAREAVVSVCGHLYCWPCLHQW 54
>sp|Q4PGG5|RAD5_USTMA DNA repair protein RAD5 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=RAD5 PE=3 SV=1
Length = 1387
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 47 LRQLESEFSELEDNSKRDQCSEISSRKRVE--------ERRKLSDKDLDRNDECGICMEN 98
LR+L ++F E D +E ++ VE ++ + D +EC IC+E
Sbjct: 1055 LRELVAQFQLDEAGEAGDDSTESYTKATVERLIGEMHGDQATVPPVVSDGENECPICLEE 1114
Query: 99 C--TKMVLPNCGHSLCVNCFHDW 119
+ LP C HS C C D+
Sbjct: 1115 SQISPCYLPRCMHSACKACLVDY 1137
>sp|Q3UWZ0|TRI75_MOUSE Tripartite motif-containing protein 75 OS=Mus musculus GN=Trim75
PE=2 SV=1
Length = 467
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 86 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQS 125
L + +C IC+++ T V CGH+ C +C D+ A Q+
Sbjct: 10 LQKETKCPICLDDLTDPVTVECGHNFCRSCIKDFWAGQQA 49
>sp|Q94CT7|XB31_ORYSJ Probable E3 ubiquitin-protein ligase XBOS31 OS=Oryza sativa subsp.
japonica GN=XBOS31 PE=2 SV=1
Length = 446
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
Query: 42 IIYPSLRQLESEFSELEDNSKRDQCSEISSRKRVEERRKLSDKDLD------------RN 89
I++PS + ELE ++K + + R E+R L D++
Sbjct: 258 IVWPSPLKF---IGELEADAKALLEAALMEANREREKRILHGSDINIKGGDEEEESEDEE 314
Query: 90 DECGICMENCTKMVLPNCGHSLCVNC 115
+ C IC E M + CGH +C C
Sbjct: 315 EACNICFEQACSMEVKECGHQMCAAC 340
>sp|Q6PC78|RN185_DANRE E3 ubiquitin-protein ligase RNF185 OS=Danio rerio GN=rnf185 PE=2
SV=1
Length = 194
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 87 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 119
D EC IC++ V+ CGH C C H W
Sbjct: 36 DSTFECNICLDTSKDAVISLCGHLFCWPCLHQW 68
>sp|P98170|XIAP_HUMAN E3 ubiquitin-protein ligase XIAP OS=Homo sapiens GN=XIAP PE=1 SV=2
Length = 497
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 9 IETKLFVNVQVYVDGMPALSSKERKATLREFYAII---YPSLRQLESEFSELEDNSKRDQ 65
I+ +F N V S K+ K + E I Y SL L ++ + +S +D+
Sbjct: 366 IDDTIFQNPMVQEAIRMGFSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNAQKDSMQDE 425
Query: 66 CSEISSRKRV---EERRKLSDKDLDRNDECGICMENCTKMVLPNCGH 109
S+ S +K + E+ R+L ++ L C ICM+ +V CGH
Sbjct: 426 SSQTSLQKEISTEEQLRRLQEEKL-----CKICMDRNIAIVFVPCGH 467
>sp|Q9FNI6|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 2
OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1
Length = 1029
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 46 SLRQLESEFSELEDNSKRDQCSEISSRKRVEERRKLSDKDLDRNDECGICMENCTKMVLP 105
S R L + S LE K D SE ++ VEE RK EC IC+E VL
Sbjct: 755 SKRFLSGKSSGLEREGK-DVPSEAFVQEVVEELRK------GEQGECPICLEALEDAVLT 807
Query: 106 NCGHSLCVNCF 116
C H LC C
Sbjct: 808 PCAHRLCRECL 818
>sp|Q5M7Z0|RNFT1_HUMAN RING finger and transmembrane domain-containing protein 1 OS=Homo
sapiens GN=RNFT1 PE=2 SV=2
Length = 435
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 78 RRKLSDKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
+R+ SD D D C IC K +L C H C C W R ++C
Sbjct: 365 KRQCSDVD----DICSICQAEFQKPILLICQHIFCEECMTLWFNREKTC 409
>sp|Q9FKA7|ORTH1_ARATH E3 ubiquitin-protein ligase ORTHRUS 1 OS=Arabidopsis thaliana
GN=ORTH1 PE=1 SV=1
Length = 617
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 24 MPALSSKERKATLREFYAIIYPSLRQLESE--FSELEDNSKRDQCSEISSRKRVEERRKL 81
+P+ + A +++ ++R ++++ +E E KR + V+E K
Sbjct: 64 VPSAAPGTGNARPESSGSVLVAAIRAIQADETLTEAEKAKKRQKLMSGGGDDGVDEEEK- 122
Query: 82 SDKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 119
K L+ C IC++ + + CGH+ C+ CF W
Sbjct: 123 --KKLEIF--CSICIQLPERPITTPCGHNFCLKCFEKW 156
>sp|Q9ULV8|CBLC_HUMAN Signal transduction protein CBL-C OS=Homo sapiens GN=CBLC PE=1 SV=3
Length = 474
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 92 CGICMENCTKMVLPNCGHSLCVNCFHDW-NARSQSCLF 128
C IC E+ + + CGH LC C W ++ SQ+C F
Sbjct: 351 CKICAESNKDVKIEPCGHLLCSCCLAAWQHSDSQTCPF 388
>sp|Q8BFW4|TRI65_MOUSE Tripartite motif-containing protein 65 OS=Mus musculus GN=Trim65
PE=2 SV=1
Length = 522
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 92 CGICMENCTKMVLPNCGHSLCVNCFHD-WNARSQSC 126
C IC+ V CGHS C NC D W + +SC
Sbjct: 13 CSICLGRYRDPVTLPCGHSFCGNCIQDSWRSCEKSC 48
>sp|O10345|IAP4_NPVOP Putative apoptosis inhibitor 4 OS=Orgyia pseudotsugata multicapsid
polyhedrosis virus GN=IAP4 PE=4 SV=1
Length = 118
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 89 NDECGICMENCTKMVLPNCGH-SLCVNC 115
NDEC +CM +MV CGH +LCV C
Sbjct: 83 NDECIVCMSEPKRMVAAPCGHYTLCVTC 110
>sp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2
SV=2
Length = 304
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 91 ECGICM----ENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
EC +C+ E+ T VLPNC H+ V+C W +C
Sbjct: 118 ECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTC 157
>sp|Q6DFR2|CBLB_XENTR E3 ubiquitin-protein ligase CBL-B OS=Xenopus tropicalis GN=cblb
PE=2 SV=1
Length = 982
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 92 CGICMENCTKMVLPNCGHSLCVNCFHDWN-ARSQSCLF 128
C IC EN + + CGH +C +C W + Q C F
Sbjct: 384 CKICAENDKDVKIEPCGHLMCTSCLTSWQESDGQGCPF 421
>sp|Q6NRE7|CBLBB_XENLA E3 ubiquitin-protein ligase CBL-B-B OS=Xenopus laevis GN=cblb-b
PE=2 SV=1
Length = 764
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 39 FYAIIYPSLRQLESEFSELEDNSKRDQCSEISSRKRVEERRKLSDKDLDRNDECGICMEN 98
FY +YP R + ++L + + D K +E+ +L + C IC EN
Sbjct: 341 FY--LYPDGRSYNPDLTDLCEPTPHDHI------KVTQEQYELYCEMGSTFQLCKICAEN 392
Query: 99 CTKMVLPNCGHSLCVNCFHDWN-ARSQSCLF 128
+ + CGH +C +C W + Q C F
Sbjct: 393 DKDVKIEPCGHLMCTSCLTSWQESDGQGCPF 423
>sp|O76064|RNF8_HUMAN E3 ubiquitin-protein ligase RNF8 OS=Homo sapiens GN=RNF8 PE=1 SV=1
Length = 485
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 60 NSKRDQCSEISSRKRVEERRKLSDKD--LDRNDECGICMENCTKMVLPNCGHSLCVNCFH 117
N + +Q E + + ++ LS + L+ +C IC E + V NC HS C C +
Sbjct: 369 NKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCIN 428
Query: 118 DWNARSQSC 126
+W R C
Sbjct: 429 EWMKRKIEC 437
>sp|Q9UPQ7|PZRN3_HUMAN E3 ubiquitin-protein ligase PDZRN3 OS=Homo sapiens GN=PDZRN3 PE=1
SV=2
Length = 1066
Score = 32.7 bits (73), Expect = 0.63, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 83 DKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 126
D D+D + +C +C + + CGH C C W + SC
Sbjct: 9 DGDVDPDLKCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSC 52
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.135 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,665,900
Number of Sequences: 539616
Number of extensions: 1623478
Number of successful extensions: 9668
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 207
Number of HSP's that attempted gapping in prelim test: 9361
Number of HSP's gapped (non-prelim): 495
length of query: 135
length of database: 191,569,459
effective HSP length: 100
effective length of query: 35
effective length of database: 137,607,859
effective search space: 4816275065
effective search space used: 4816275065
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)