Query 032728
Match_columns 135
No_of_seqs 148 out of 1642
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 07:59:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032728.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032728hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ayc_A E3 ubiquitin-protein li 99.5 5.3E-15 1.8E-19 103.7 3.5 47 88-134 52-98 (138)
2 1iym_A EL5; ring-H2 finger, ub 99.5 1.4E-14 4.9E-19 85.9 4.4 48 87-134 3-54 (55)
3 2ea6_A Ring finger protein 4; 99.5 8.7E-15 3E-19 90.3 2.9 51 85-135 11-68 (69)
4 3ng2_A RNF4, snurf, ring finge 99.5 7E-15 2.4E-19 91.4 2.5 49 86-134 7-62 (71)
5 2djb_A Polycomb group ring fin 99.5 1.6E-14 5.3E-19 90.5 4.0 49 86-134 12-61 (72)
6 2d8t_A Dactylidin, ring finger 99.5 1.6E-14 5.4E-19 90.3 3.4 49 86-134 12-60 (71)
7 2csy_A Zinc finger protein 183 99.5 2.4E-14 8.3E-19 91.5 4.2 49 86-134 12-60 (81)
8 2ecy_A TNF receptor-associated 99.5 2.9E-14 9.8E-19 87.8 4.2 49 86-134 12-61 (66)
9 2yur_A Retinoblastoma-binding 99.5 2.9E-14 1E-18 89.9 3.8 50 85-134 11-63 (74)
10 2ysl_A Tripartite motif-contai 99.5 5.4E-14 1.8E-18 87.8 4.9 50 85-134 16-68 (73)
11 1t1h_A Gspef-atpub14, armadill 99.5 3.4E-14 1.2E-18 90.0 3.8 50 85-134 4-54 (78)
12 2ecm_A Ring finger and CHY zin 99.4 5.2E-14 1.8E-18 83.3 3.7 47 88-134 4-54 (55)
13 2xeu_A Ring finger protein 4; 99.4 2.2E-14 7.7E-19 87.2 2.0 47 88-134 2-55 (64)
14 2kiz_A E3 ubiquitin-protein li 99.4 7.5E-14 2.6E-18 86.5 4.3 49 86-134 11-62 (69)
15 2egp_A Tripartite motif-contai 99.4 4.8E-14 1.6E-18 89.3 2.8 50 85-134 8-64 (79)
16 2ecl_A Ring-box protein 2; RNF 99.4 8.4E-14 2.9E-18 89.4 3.9 47 88-134 14-75 (81)
17 1chc_A Equine herpes virus-1 r 99.4 7.4E-14 2.5E-18 86.2 3.4 47 88-134 4-51 (68)
18 3ztg_A E3 ubiquitin-protein li 99.4 8.7E-14 3E-18 90.7 3.9 50 84-133 8-60 (92)
19 3lrq_A E3 ubiquitin-protein li 99.4 3.9E-14 1.3E-18 94.3 2.2 47 88-134 21-69 (100)
20 2ecw_A Tripartite motif-contai 99.4 1.5E-13 5.1E-18 87.7 4.5 50 85-134 15-70 (85)
21 2ct2_A Tripartite motif protei 99.4 1.4E-13 4.9E-18 88.6 4.3 50 85-134 11-67 (88)
22 2ep4_A Ring finger protein 24; 99.4 1.2E-13 4.2E-18 86.6 3.8 49 86-134 12-63 (74)
23 2ecn_A Ring finger protein 141 99.4 5.3E-14 1.8E-18 87.4 2.1 48 86-134 12-59 (70)
24 1x4j_A Ring finger protein 38; 99.4 9.2E-14 3.1E-18 87.5 2.8 48 87-134 21-71 (75)
25 2l0b_A E3 ubiquitin-protein li 99.4 1.2E-13 4.1E-18 90.4 3.4 49 86-134 37-88 (91)
26 2ect_A Ring finger protein 126 99.4 1.6E-13 5.6E-18 86.8 3.9 49 86-134 12-63 (78)
27 2ecv_A Tripartite motif-contai 99.4 2.3E-13 7.8E-18 86.8 4.5 50 85-134 15-70 (85)
28 1v87_A Deltex protein 2; ring- 99.4 2.8E-13 9.6E-18 91.5 5.0 48 87-134 23-93 (114)
29 2ysj_A Tripartite motif-contai 99.4 3.4E-13 1.2E-17 82.1 4.1 45 85-129 16-63 (63)
30 2ckl_A Polycomb group ring fin 99.4 1.5E-13 5E-18 92.4 2.3 48 87-134 13-61 (108)
31 3fl2_A E3 ubiquitin-protein li 99.4 1.8E-13 6E-18 94.1 2.7 47 88-134 51-98 (124)
32 1g25_A CDK-activating kinase a 99.4 2.3E-13 8E-18 83.4 2.8 46 89-134 3-54 (65)
33 2ecj_A Tripartite motif-contai 99.4 7.4E-13 2.5E-17 79.0 4.8 45 85-129 11-58 (58)
34 2y43_A E3 ubiquitin-protein li 99.4 2.6E-13 8.9E-18 89.7 2.8 46 89-134 22-68 (99)
35 2kr4_A Ubiquitin conjugation f 99.3 7.1E-13 2.4E-17 85.9 4.2 50 85-134 10-59 (85)
36 1e4u_A Transcriptional repress 99.3 2E-12 6.8E-17 82.7 5.2 50 85-134 7-61 (78)
37 4ap4_A E3 ubiquitin ligase RNF 99.3 5.6E-13 1.9E-17 91.4 2.6 48 87-134 5-59 (133)
38 2kre_A Ubiquitin conjugation f 99.3 1.2E-12 4E-17 87.5 4.0 50 85-134 25-74 (100)
39 3hct_A TNF receptor-associated 99.3 6E-13 2.1E-17 90.8 2.4 50 85-134 14-64 (118)
40 1wgm_A Ubiquitin conjugation f 99.3 2E-12 6.9E-17 86.0 4.4 50 85-134 18-68 (98)
41 3l11_A E3 ubiquitin-protein li 99.3 3.1E-13 1.1E-17 91.6 0.2 47 87-133 13-60 (115)
42 1jm7_A BRCA1, breast cancer ty 99.3 1.7E-12 5.9E-17 87.1 3.8 46 89-134 21-69 (112)
43 1z6u_A NP95-like ring finger p 99.3 1.3E-12 4.3E-17 93.1 2.7 47 88-134 77-124 (150)
44 2vje_A E3 ubiquitin-protein li 99.3 9.7E-13 3.3E-17 81.0 1.8 48 87-134 6-56 (64)
45 3dpl_R Ring-box protein 1; ubi 99.3 2.5E-12 8.5E-17 86.8 3.8 46 88-133 36-99 (106)
46 1rmd_A RAG1; V(D)J recombinati 99.3 1.4E-12 4.7E-17 88.5 2.2 46 89-134 23-69 (116)
47 2ckl_B Ubiquitin ligase protei 99.2 1.2E-12 4.2E-17 93.9 1.6 47 88-134 53-101 (165)
48 3knv_A TNF receptor-associated 99.2 1.5E-12 5.2E-17 91.8 1.9 49 85-133 27-76 (141)
49 1bor_A Transcription factor PM 99.2 2.3E-12 7.9E-17 77.1 2.3 45 87-134 4-48 (56)
50 2vje_B MDM4 protein; proto-onc 99.2 2.5E-12 8.6E-17 78.9 1.7 46 89-134 7-55 (63)
51 1jm7_B BARD1, BRCA1-associated 99.2 2.8E-12 9.7E-17 87.3 2.1 45 88-134 21-66 (117)
52 4ap4_A E3 ubiquitin ligase RNF 99.2 3.3E-12 1.1E-16 87.5 1.4 48 87-134 70-124 (133)
53 4ic3_A E3 ubiquitin-protein li 99.2 2.9E-12 1E-16 80.8 0.6 42 89-134 24-66 (74)
54 2c2l_A CHIP, carboxy terminus 99.2 1.3E-11 4.4E-16 94.0 4.1 50 85-134 204-254 (281)
55 3hcs_A TNF receptor-associated 99.1 1.6E-11 5.4E-16 88.4 2.6 50 85-134 14-64 (170)
56 2y1n_A E3 ubiquitin-protein li 99.1 2.4E-11 8.1E-16 98.2 3.9 46 89-134 332-378 (389)
57 4a0k_B E3 ubiquitin-protein li 99.1 9E-12 3.1E-16 85.5 0.3 45 89-133 48-110 (117)
58 2yu4_A E3 SUMO-protein ligase 99.1 3.2E-11 1.1E-15 79.3 2.8 46 87-132 5-59 (94)
59 2f42_A STIP1 homology and U-bo 99.1 9.9E-11 3.4E-15 85.7 5.2 52 83-134 100-152 (179)
60 2ecg_A Baculoviral IAP repeat- 99.1 7.6E-11 2.6E-15 74.3 3.7 41 90-134 26-67 (75)
61 2ea5_A Cell growth regulator w 99.1 1.2E-10 4.1E-15 72.4 4.1 44 87-134 13-57 (68)
62 2yho_A E3 ubiquitin-protein li 99.0 6.2E-11 2.1E-15 75.8 0.5 41 90-134 19-60 (79)
63 2d8s_A Cellular modulator of i 99.0 3.3E-10 1.1E-14 72.6 3.5 48 87-134 13-69 (80)
64 2ct0_A Non-SMC element 1 homol 98.9 2.5E-09 8.5E-14 67.7 4.5 46 89-134 15-63 (74)
65 3htk_C E3 SUMO-protein ligase 98.8 1.1E-09 3.9E-14 84.2 3.2 46 89-134 181-231 (267)
66 3t6p_A Baculoviral IAP repeat- 98.8 7.3E-10 2.5E-14 88.4 1.1 43 88-134 294-337 (345)
67 1wim_A KIAA0161 protein; ring 98.7 3.1E-09 1.1E-13 69.4 2.4 45 88-132 4-61 (94)
68 2bay_A PRE-mRNA splicing facto 98.6 8.2E-09 2.8E-13 62.8 1.6 45 90-134 4-49 (61)
69 3k1l_B Fancl; UBC, ring, RWD, 98.6 1.6E-08 5.6E-13 80.6 2.1 47 88-134 307-372 (381)
70 1vyx_A ORF K3, K3RING; zinc-bi 98.5 6.4E-08 2.2E-12 58.6 3.8 48 87-134 4-58 (60)
71 3vk6_A E3 ubiquitin-protein li 98.3 3.6E-07 1.2E-11 60.5 2.7 44 91-135 3-49 (101)
72 3nw0_A Non-structural maintena 97.4 0.00016 5.5E-09 54.7 4.4 45 89-133 180-227 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 96.7 0.00071 2.4E-08 44.0 2.2 33 88-120 2-38 (101)
74 2ko5_A Ring finger protein Z; 93.5 0.068 2.3E-06 34.8 3.4 45 88-134 27-72 (99)
75 3m62_A Ubiquitin conjugation f 92.8 0.096 3.3E-06 46.6 4.4 50 85-134 887-937 (968)
76 2lri_C Autoimmune regulator; Z 92.3 0.13 4.3E-06 31.2 3.2 45 88-132 11-59 (66)
77 1wil_A KIAA1045 protein; ring 90.6 0.49 1.7E-05 30.1 4.7 34 85-119 11-47 (89)
78 2l5u_A Chromodomain-helicase-D 88.9 0.31 1.1E-05 28.7 2.7 48 84-131 6-57 (61)
79 1joc_A EEA1, early endosomal a 87.6 3.4 0.00012 27.7 7.6 30 89-118 69-102 (125)
80 1mm2_A MI2-beta; PHD, zinc fin 87.0 0.34 1.2E-05 28.5 2.0 47 87-133 7-57 (61)
81 1weo_A Cellulose synthase, cat 85.2 1.3 4.5E-05 28.4 4.2 46 90-135 17-70 (93)
82 2yql_A PHD finger protein 21A; 84.9 0.17 5.9E-06 29.3 -0.1 47 85-131 5-55 (56)
83 2cs3_A Protein C14ORF4, MY039 83.7 1.1 3.8E-05 28.3 3.3 36 87-122 13-52 (93)
84 3u5n_A E3 ubiquitin-protein li 82.6 0.33 1.1E-05 35.3 0.7 46 87-132 5-54 (207)
85 2lbm_A Transcriptional regulat 80.8 2.5 8.7E-05 29.2 4.6 47 85-131 59-116 (142)
86 3o36_A Transcription intermedi 80.7 0.59 2E-05 33.2 1.4 45 88-132 3-51 (184)
87 2jmo_A Parkin; IBR, E3 ligase, 80.7 0.19 6.7E-06 31.3 -1.0 20 106-127 55-74 (80)
88 1zbd_B Rabphilin-3A; G protein 80.3 3.2 0.00011 28.3 5.0 31 87-117 53-88 (134)
89 3ql9_A Transcriptional regulat 79.5 3.5 0.00012 28.0 5.0 47 85-131 53-110 (129)
90 1z60_A TFIIH basal transcripti 79.5 1.3 4.3E-05 26.2 2.3 39 91-129 17-58 (59)
91 1wd2_A Ariadne-1 protein homol 76.9 0.65 2.2E-05 27.4 0.5 34 90-123 7-48 (60)
92 1xwh_A Autoimmune regulator; P 75.9 0.55 1.9E-05 28.0 -0.0 45 87-131 6-54 (66)
93 1z2q_A LM5-1; membrane protein 74.2 2.4 8.1E-05 26.4 2.7 31 88-118 20-54 (84)
94 2ysm_A Myeloid/lymphoid or mix 73.8 1.6 5.4E-05 28.4 1.8 34 87-120 5-41 (111)
95 1fp0_A KAP-1 corepressor; PHD 73.4 1.8 6.2E-05 27.5 2.0 46 86-131 22-71 (88)
96 1x4u_A Zinc finger, FYVE domai 72.7 2.5 8.6E-05 26.2 2.5 31 88-118 13-47 (84)
97 2zet_C Melanophilin; complex, 71.8 7.7 0.00026 27.0 5.1 30 87-116 66-100 (153)
98 2yw8_A RUN and FYVE domain-con 71.4 2.8 9.7E-05 25.9 2.5 30 89-118 19-52 (82)
99 1vfy_A Phosphatidylinositol-3- 70.4 3 0.0001 25.1 2.5 29 90-118 12-44 (73)
100 2puy_A PHD finger protein 21A; 69.4 1 3.4E-05 26.2 0.1 45 88-132 4-52 (60)
101 1f62_A Transcription factor WS 69.3 3.1 0.00011 23.1 2.2 41 91-131 2-49 (51)
102 1wfk_A Zinc finger, FYVE domai 67.4 4.2 0.00014 25.6 2.7 31 88-118 8-42 (88)
103 2ro1_A Transcription intermedi 66.5 2.6 8.9E-05 30.2 1.8 44 89-132 2-49 (189)
104 3t7l_A Zinc finger FYVE domain 66.3 3.2 0.00011 26.1 2.0 31 89-119 20-54 (90)
105 2k16_A Transcription initiatio 66.2 1.5 5.2E-05 26.5 0.5 47 88-134 17-70 (75)
106 2ct7_A Ring finger protein 31; 64.8 0.56 1.9E-05 29.4 -1.8 17 103-119 45-61 (86)
107 3fyb_A Protein of unknown func 64.6 2.4 8.2E-05 27.6 1.2 12 110-121 41-52 (104)
108 2gmg_A Hypothetical protein PF 64.5 2.3 7.7E-05 28.0 1.0 23 105-132 71-93 (105)
109 2o35_A Hypothetical protein DU 64.2 2.5 8.5E-05 27.6 1.2 12 110-121 42-53 (105)
110 1y02_A CARP2, FYVE-ring finger 60.7 4.9 0.00017 26.9 2.2 42 88-129 18-63 (120)
111 3zyq_A Hepatocyte growth facto 59.8 4.5 0.00015 29.7 2.1 32 88-119 163-198 (226)
112 1wen_A Inhibitor of growth fam 59.6 8.5 0.00029 23.1 3.0 47 87-134 14-67 (71)
113 1dvp_A HRS, hepatocyte growth 59.3 4.3 0.00015 29.5 1.9 30 89-118 161-194 (220)
114 3a1b_A DNA (cytosine-5)-methyl 58.3 9.6 0.00033 26.8 3.5 38 84-121 74-113 (159)
115 2pv0_B DNA (cytosine-5)-methyl 53.9 12 0.0004 30.0 3.7 45 86-130 90-146 (386)
116 2e6r_A Jumonji/ARID domain-con 53.1 2 7E-05 27.3 -0.7 47 85-131 12-65 (92)
117 1weu_A Inhibitor of growth fam 52.0 8.5 0.00029 24.4 2.2 47 87-134 34-87 (91)
118 2d8v_A Zinc finger FYVE domain 51.6 7.6 0.00026 23.4 1.7 33 87-120 6-39 (67)
119 2yt5_A Metal-response element- 49.2 7.2 0.00025 22.7 1.4 46 87-132 4-61 (66)
120 1wev_A Riken cDNA 1110020M19; 46.4 1 3.6E-05 28.4 -2.9 44 89-132 16-72 (88)
121 3v43_A Histone acetyltransfera 45.7 31 0.0011 22.2 4.3 29 89-117 5-42 (112)
122 2jne_A Hypothetical protein YF 43.9 1.2 4E-05 29.1 -2.9 40 90-134 33-72 (101)
123 2jrp_A Putative cytoplasmic pr 43.8 1.7 5.8E-05 27.3 -2.1 40 90-134 3-42 (81)
124 2l43_A N-teminal domain from h 43.6 20 0.00067 22.3 2.9 46 86-131 22-74 (88)
125 4gne_A Histone-lysine N-methyl 41.8 16 0.00054 23.8 2.3 42 86-130 12-60 (107)
126 1we9_A PHD finger family prote 40.0 7.8 0.00027 22.4 0.5 46 87-132 4-58 (64)
127 2lcq_A Putative toxin VAPC6; P 39.7 7.2 0.00025 26.9 0.3 25 105-135 136-160 (165)
128 3mpx_A FYVE, rhogef and PH dom 39.4 6.2 0.00021 31.1 0.0 45 89-133 375-430 (434)
129 3i2d_A E3 SUMO-protein ligase 38.1 25 0.00085 28.0 3.3 44 90-133 250-298 (371)
130 4fo9_A E3 SUMO-protein ligase 36.5 28 0.00096 27.6 3.3 44 90-133 216-264 (360)
131 2fiy_A Protein FDHE homolog; F 35.6 4.4 0.00015 31.4 -1.4 46 87-132 180-231 (309)
132 2kwj_A Zinc finger protein DPF 35.4 20 0.00069 23.2 2.0 14 105-118 27-40 (114)
133 3asl_A E3 ubiquitin-protein li 35.2 10 0.00035 22.7 0.5 42 91-132 20-69 (70)
134 2vnf_A ING 4, P29ING4, inhibit 34.2 7.4 0.00025 22.5 -0.3 43 88-131 9-58 (60)
135 2lv9_A Histone-lysine N-methyl 33.3 17 0.00059 23.0 1.4 42 89-131 28-75 (98)
136 2e6s_A E3 ubiquitin-protein li 32.8 11 0.00036 23.1 0.3 41 91-131 28-76 (77)
137 3shb_A E3 ubiquitin-protein li 29.4 13 0.00044 22.7 0.3 41 91-131 28-76 (77)
138 2ku3_A Bromodomain-containing 29.3 43 0.0015 19.9 2.7 46 86-131 13-65 (71)
139 3vth_A Hydrogenase maturation 29.0 26 0.00088 30.5 2.1 20 111-130 163-190 (761)
140 1m3v_A FLIN4, fusion of the LI 28.5 40 0.0014 21.7 2.6 44 91-134 34-80 (122)
141 1lko_A Rubrerythrin all-iron(I 28.3 20 0.0007 25.4 1.2 21 106-132 160-180 (191)
142 2kdx_A HYPA, hydrogenase/ureas 28.3 22 0.00076 23.1 1.3 23 105-133 77-100 (119)
143 3ask_A E3 ubiquitin-protein li 27.7 20 0.00068 26.6 1.0 41 91-131 176-224 (226)
144 3pwf_A Rubrerythrin; non heme 27.4 27 0.00091 24.5 1.7 21 105-132 142-162 (170)
145 1x62_A C-terminal LIM domain p 27.1 59 0.002 19.0 3.1 26 90-115 16-41 (79)
146 3c6w_A P28ING5, inhibitor of g 25.9 8.7 0.0003 22.2 -1.0 44 87-131 7-57 (59)
147 3mjh_B Early endosome antigen 25.9 19 0.00065 18.6 0.5 6 91-96 7-12 (34)
148 4g9i_A Hydrogenase maturation 25.6 37 0.0013 29.5 2.5 20 111-130 158-185 (772)
149 1wig_A KIAA1808 protein; LIM d 25.5 61 0.0021 18.7 2.9 31 91-121 33-65 (73)
150 2a20_A Regulating synaptic mem 25.3 48 0.0016 19.4 2.2 46 86-131 6-59 (62)
151 2g6q_A Inhibitor of growth pro 25.2 9.2 0.00031 22.3 -1.0 45 87-132 9-60 (62)
152 1wyh_A SLIM 2, skeletal muscle 25.0 77 0.0026 17.8 3.2 12 108-119 53-64 (72)
153 2cor_A Pinch protein; LIM doma 24.8 99 0.0034 18.0 3.8 9 108-116 60-68 (79)
154 2jvx_A NF-kappa-B essential mo 24.1 20 0.00067 17.8 0.3 8 125-132 5-12 (28)
155 1x64_A Alpha-actinin-2 associa 23.9 83 0.0028 18.7 3.4 26 90-115 26-51 (89)
156 3c5k_A HD6, histone deacetylas 23.8 43 0.0015 21.7 2.0 25 89-113 24-48 (109)
157 1x6a_A LIMK-2, LIM domain kina 21.9 70 0.0024 18.6 2.7 15 107-121 62-76 (81)
158 1yuz_A Nigerythrin; rubrythrin 20.8 40 0.0014 24.1 1.6 21 105-132 175-195 (202)
159 1l8d_A DNA double-strand break 20.8 26 0.00088 22.3 0.5 8 89-96 47-54 (112)
No 1
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.51 E-value=5.3e-15 Score=103.75 Aligned_cols=47 Identities=30% Similarity=0.690 Sum_probs=42.2
Q ss_pred CCCcccccccCCcccccCCCCCccchhhHHHHhccCCCCcccccccc
Q 032728 88 RNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 88 ~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
++..|+||++.+.+++.++|||.||..||..|+..+..||+||.++.
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 34589999999888887789999999999999999999999999875
No 2
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.50 E-value=1.4e-14 Score=85.89 Aligned_cols=48 Identities=25% Similarity=0.689 Sum_probs=39.9
Q ss_pred CCCCcccccccCCcc----cccCCCCCccchhhHHHHhccCCCCcccccccc
Q 032728 87 DRNDECGICMENCTK----MVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 87 ~~~~~C~IC~~~~~~----~~l~~CgH~FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
+++..|+||++.... ..+++|||.||..|+.+|+..+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 456689999977544 344569999999999999999999999999863
No 3
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=8.7e-15 Score=90.27 Aligned_cols=51 Identities=24% Similarity=0.596 Sum_probs=42.6
Q ss_pred CCCCCCcccccccCCccc-------ccCCCCCccchhhHHHHhccCCCCccccccccC
Q 032728 85 DLDRNDECGICMENCTKM-------VLPNCGHSLCVNCFHDWNARSQSCLFAVAAYRE 135 (135)
Q Consensus 85 ~~~~~~~C~IC~~~~~~~-------~l~~CgH~FC~~Ci~~~~~~~~~CP~CR~~i~~ 135 (135)
...++..|+||++.+.++ +.++|||.||..||.+|+..+..||+||.++.+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 345567899999876554 566799999999999999988999999998864
No 4
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.49 E-value=7e-15 Score=91.38 Aligned_cols=49 Identities=24% Similarity=0.620 Sum_probs=41.9
Q ss_pred CCCCCcccccccCCccc-------ccCCCCCccchhhHHHHhccCCCCcccccccc
Q 032728 86 LDRNDECGICMENCTKM-------VLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 86 ~~~~~~C~IC~~~~~~~-------~l~~CgH~FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
.+++..|+||++...++ +.++|||.||..|+.+|+..+..||+||.++.
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccC
Confidence 35567899999876554 66679999999999999998999999999875
No 5
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.6e-14 Score=90.54 Aligned_cols=49 Identities=20% Similarity=0.352 Sum_probs=42.1
Q ss_pred CCCCCcccccccCCccccc-CCCCCccchhhHHHHhccCCCCcccccccc
Q 032728 86 LDRNDECGICMENCTKMVL-PNCGHSLCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 86 ~~~~~~C~IC~~~~~~~~l-~~CgH~FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
.+++..|+||++.+.+++. ++|||.||..||..|+..+..||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (72)
T 2djb_A 12 LTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61 (72)
T ss_dssp CCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred cCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence 4556799999988776654 479999999999999988899999999875
No 6
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.6e-14 Score=90.27 Aligned_cols=49 Identities=22% Similarity=0.504 Sum_probs=42.9
Q ss_pred CCCCCcccccccCCcccccCCCCCccchhhHHHHhccCCCCcccccccc
Q 032728 86 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 86 ~~~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
..++..|+||++...+++.++|||.||..||..|+.....||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 3456789999988888777679999999999999998899999999875
No 7
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2.4e-14 Score=91.48 Aligned_cols=49 Identities=18% Similarity=0.396 Sum_probs=43.1
Q ss_pred CCCCCcccccccCCcccccCCCCCccchhhHHHHhccCCCCcccccccc
Q 032728 86 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 86 ~~~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
.+++..|+||++.+.+++.++|||.||..|+..|+.....||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3456799999998888877789999999999999988899999998864
No 8
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.9e-14 Score=87.80 Aligned_cols=49 Identities=18% Similarity=0.434 Sum_probs=42.2
Q ss_pred CCCCCcccccccCCcccccCCCCCccchhhHHHHhc-cCCCCcccccccc
Q 032728 86 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNA-RSQSCLFAVAAYR 134 (135)
Q Consensus 86 ~~~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~-~~~~CP~CR~~i~ 134 (135)
.+++..|+||++...+++.++|||.||..|+.+|+. ....||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp CCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred CCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 456679999998887777778999999999999995 4679999999875
No 9
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.46 E-value=2.9e-14 Score=89.88 Aligned_cols=50 Identities=24% Similarity=0.409 Sum_probs=42.4
Q ss_pred CCCCCCcccccccCCcccccCC-CCCccchhhHHHHhccC--CCCcccccccc
Q 032728 85 DLDRNDECGICMENCTKMVLPN-CGHSLCVNCFHDWNARS--QSCLFAVAAYR 134 (135)
Q Consensus 85 ~~~~~~~C~IC~~~~~~~~l~~-CgH~FC~~Ci~~~~~~~--~~CP~CR~~i~ 134 (135)
+..++..|+||++.+.+++.++ |||.||..||..|+..+ ..||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 3456679999999988887777 99999999999999764 69999999753
No 10
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=5.4e-14 Score=87.84 Aligned_cols=50 Identities=26% Similarity=0.614 Sum_probs=42.5
Q ss_pred CCCCCCcccccccCCcccccCCCCCccchhhHHHHhc---cCCCCcccccccc
Q 032728 85 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNA---RSQSCLFAVAAYR 134 (135)
Q Consensus 85 ~~~~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~---~~~~CP~CR~~i~ 134 (135)
+.+++..|+||++.+.+++..+|||.||..|+..|+. ....||+||.++.
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 3456779999999888877778999999999999996 3568999999875
No 11
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.46 E-value=3.4e-14 Score=90.03 Aligned_cols=50 Identities=14% Similarity=0.291 Sum_probs=43.7
Q ss_pred CCCCCCcccccccCCcccccCCCCCccchhhHHHHhcc-CCCCcccccccc
Q 032728 85 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR-SQSCLFAVAAYR 134 (135)
Q Consensus 85 ~~~~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~-~~~CP~CR~~i~ 134 (135)
+..++..|+||++.+.+++.++|||+||..||.+|+.. +..||+||.++.
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 34567799999999888877789999999999999987 789999999874
No 12
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.44 E-value=5.2e-14 Score=83.32 Aligned_cols=47 Identities=21% Similarity=0.533 Sum_probs=39.7
Q ss_pred CCCcccccccCCcc----cccCCCCCccchhhHHHHhccCCCCcccccccc
Q 032728 88 RNDECGICMENCTK----MVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 88 ~~~~C~IC~~~~~~----~~l~~CgH~FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
++..|+||++...+ ++.++|||.||..|+.+|+.....||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45689999977533 556679999999999999998899999999874
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.44 E-value=2.2e-14 Score=87.16 Aligned_cols=47 Identities=26% Similarity=0.643 Sum_probs=40.0
Q ss_pred CCCcccccccCCccc-------ccCCCCCccchhhHHHHhccCCCCcccccccc
Q 032728 88 RNDECGICMENCTKM-------VLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 88 ~~~~C~IC~~~~~~~-------~l~~CgH~FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
++..|+||++...++ +.++|||.||..|+.+|+..+..||+||.++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence 356899999876543 56679999999999999998899999999875
No 14
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.44 E-value=7.5e-14 Score=86.47 Aligned_cols=49 Identities=18% Similarity=0.466 Sum_probs=40.0
Q ss_pred CCCCCcccccccCC---cccccCCCCCccchhhHHHHhccCCCCcccccccc
Q 032728 86 LDRNDECGICMENC---TKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 86 ~~~~~~C~IC~~~~---~~~~l~~CgH~FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
.+++..|+||++.+ ..++..+|||.||..||.+|+..+..||+||..+.
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 34566899999764 33454569999999999999998899999999875
No 15
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.43 E-value=4.8e-14 Score=89.25 Aligned_cols=50 Identities=32% Similarity=0.651 Sum_probs=42.7
Q ss_pred CCCCCCcccccccCCcccccCCCCCccchhhHHHHhcc-------CCCCcccccccc
Q 032728 85 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR-------SQSCLFAVAAYR 134 (135)
Q Consensus 85 ~~~~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~-------~~~CP~CR~~i~ 134 (135)
+.+++..|+||++.+.+++..+|||.||..|+..|+.. ...||+||.++.
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 34667799999988877777779999999999999876 568999999874
No 16
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=8.4e-14 Score=89.42 Aligned_cols=47 Identities=23% Similarity=0.591 Sum_probs=38.4
Q ss_pred CCCcccccccCCcc---------------cccCCCCCccchhhHHHHhccCCCCcccccccc
Q 032728 88 RNDECGICMENCTK---------------MVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 88 ~~~~C~IC~~~~~~---------------~~l~~CgH~FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
++..|+||++.+.+ .++++|||.||..||.+|+..+.+||+||+++.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 34578888866533 355679999999999999999999999999864
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.42 E-value=7.4e-14 Score=86.16 Aligned_cols=47 Identities=21% Similarity=0.649 Sum_probs=40.3
Q ss_pred CCCcccccccCCccc-ccCCCCCccchhhHHHHhccCCCCcccccccc
Q 032728 88 RNDECGICMENCTKM-VLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 88 ~~~~C~IC~~~~~~~-~l~~CgH~FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
++..|+||++...++ +..+|||.||..|+.+|+..+..||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 455899999887663 56669999999999999998899999998874
No 18
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.42 E-value=8.7e-14 Score=90.72 Aligned_cols=50 Identities=22% Similarity=0.412 Sum_probs=42.6
Q ss_pred cCCCCCCcccccccCCcccccCC-CCCccchhhHHHHhcc--CCCCccccccc
Q 032728 84 KDLDRNDECGICMENCTKMVLPN-CGHSLCVNCFHDWNAR--SQSCLFAVAAY 133 (135)
Q Consensus 84 ~~~~~~~~C~IC~~~~~~~~l~~-CgH~FC~~Ci~~~~~~--~~~CP~CR~~i 133 (135)
.+..++..|+||++.+.+++..+ |||+||..||..|+.. ...||+||.++
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 34566789999999988887777 9999999999999864 36999999986
No 19
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.42 E-value=3.9e-14 Score=94.26 Aligned_cols=47 Identities=28% Similarity=0.652 Sum_probs=41.6
Q ss_pred CCCcccccccCCccccc-CCCCCccchhhHHHHhccC-CCCcccccccc
Q 032728 88 RNDECGICMENCTKMVL-PNCGHSLCVNCFHDWNARS-QSCLFAVAAYR 134 (135)
Q Consensus 88 ~~~~C~IC~~~~~~~~l-~~CgH~FC~~Ci~~~~~~~-~~CP~CR~~i~ 134 (135)
++..|+||++.+.+++. ++|||.||..||..|+..+ ..||+||.++.
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 34589999999888877 8899999999999999887 69999999874
No 20
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.41 E-value=1.5e-13 Score=87.69 Aligned_cols=50 Identities=24% Similarity=0.521 Sum_probs=42.8
Q ss_pred CCCCCCcccccccCCcccccCCCCCccchhhHHHHhcc------CCCCcccccccc
Q 032728 85 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR------SQSCLFAVAAYR 134 (135)
Q Consensus 85 ~~~~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~------~~~CP~CR~~i~ 134 (135)
+.+++..|+||++.+.+++.++|||.||..|+..|+.. ...||.||..+.
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 34567799999998888777779999999999999876 678999999875
No 21
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.4e-13 Score=88.62 Aligned_cols=50 Identities=38% Similarity=0.709 Sum_probs=41.7
Q ss_pred CCCCCCcccccccCCcc----cccCCCCCccchhhHHHHhccC---CCCcccccccc
Q 032728 85 DLDRNDECGICMENCTK----MVLPNCGHSLCVNCFHDWNARS---QSCLFAVAAYR 134 (135)
Q Consensus 85 ~~~~~~~C~IC~~~~~~----~~l~~CgH~FC~~Ci~~~~~~~---~~CP~CR~~i~ 134 (135)
..+++..|+||++.+.. ++..+|||.||..|+.+|+..+ ..||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 44566799999988765 6666799999999999999865 79999999764
No 22
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.2e-13 Score=86.59 Aligned_cols=49 Identities=18% Similarity=0.527 Sum_probs=39.8
Q ss_pred CCCCCcccccccCCcccc---cCCCCCccchhhHHHHhccCCCCcccccccc
Q 032728 86 LDRNDECGICMENCTKMV---LPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 86 ~~~~~~C~IC~~~~~~~~---l~~CgH~FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
.+++..|+||++.+..+. ..+|||.||..||.+|+..+..||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 455679999997754432 2259999999999999998889999999875
No 23
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=5.3e-14 Score=87.38 Aligned_cols=48 Identities=29% Similarity=0.823 Sum_probs=41.5
Q ss_pred CCCCCcccccccCCcccccCCCCCccchhhHHHHhccCCCCcccccccc
Q 032728 86 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 86 ~~~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
..++..|+||++...+ +.++|||.||..|+.+|+.....||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred CCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence 3556799999988777 55569999999999999998999999998875
No 24
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=9.2e-14 Score=87.54 Aligned_cols=48 Identities=19% Similarity=0.511 Sum_probs=39.4
Q ss_pred CCCCcccccccCCccc---ccCCCCCccchhhHHHHhccCCCCcccccccc
Q 032728 87 DRNDECGICMENCTKM---VLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 87 ~~~~~C~IC~~~~~~~---~l~~CgH~FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
+++..|+||++.+... ...+|||.||..||.+|+..+..||+||+++.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 4566899999665432 33459999999999999998899999999875
No 25
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.40 E-value=1.2e-13 Score=90.42 Aligned_cols=49 Identities=20% Similarity=0.463 Sum_probs=39.9
Q ss_pred CCCCCcccccccCCcc---cccCCCCCccchhhHHHHhccCCCCcccccccc
Q 032728 86 LDRNDECGICMENCTK---MVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 86 ~~~~~~C~IC~~~~~~---~~l~~CgH~FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
.+++..|+||++.+.. +...+|||.||..||.+|+..+..||+||..+.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 3456789999966443 443459999999999999999999999999875
No 26
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.40 E-value=1.6e-13 Score=86.84 Aligned_cols=49 Identities=20% Similarity=0.453 Sum_probs=40.0
Q ss_pred CCCCCcccccccCCccc---ccCCCCCccchhhHHHHhccCCCCcccccccc
Q 032728 86 LDRNDECGICMENCTKM---VLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 86 ~~~~~~C~IC~~~~~~~---~l~~CgH~FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
.+++..|+||++.+..+ ...+|||.||..||.+|+..+..||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence 45567999999775432 33459999999999999998899999999875
No 27
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.3e-13 Score=86.83 Aligned_cols=50 Identities=28% Similarity=0.681 Sum_probs=42.8
Q ss_pred CCCCCCcccccccCCcccccCCCCCccchhhHHHHhcc------CCCCcccccccc
Q 032728 85 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR------SQSCLFAVAAYR 134 (135)
Q Consensus 85 ~~~~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~------~~~CP~CR~~i~ 134 (135)
+.+++..|+||++...+++..+|||.||..|+..|+.. ...||.||..+.
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 34567799999998877777779999999999999876 679999998875
No 28
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.39 E-value=2.8e-13 Score=91.53 Aligned_cols=48 Identities=25% Similarity=0.526 Sum_probs=37.9
Q ss_pred CCCCcccccccCCcccc------------------cCCCCCccchhhHHHHh-----ccCCCCcccccccc
Q 032728 87 DRNDECGICMENCTKMV------------------LPNCGHSLCVNCFHDWN-----ARSQSCLFAVAAYR 134 (135)
Q Consensus 87 ~~~~~C~IC~~~~~~~~------------------l~~CgH~FC~~Ci~~~~-----~~~~~CP~CR~~i~ 134 (135)
..+..|+||++.+..+. +++|||.||..||..|+ ..+..||+||+.+.
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 34568999997754322 56699999999999999 44679999998874
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=3.4e-13 Score=82.11 Aligned_cols=45 Identities=27% Similarity=0.655 Sum_probs=38.4
Q ss_pred CCCCCCcccccccCCcccccCCCCCccchhhHHHHhc---cCCCCccc
Q 032728 85 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNA---RSQSCLFA 129 (135)
Q Consensus 85 ~~~~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~---~~~~CP~C 129 (135)
..+++..|+||++.+.+++.++|||.||..||.+|+. ....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456779999999888877778999999999999997 35689998
No 30
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.37 E-value=1.5e-13 Score=92.38 Aligned_cols=48 Identities=19% Similarity=0.393 Sum_probs=41.8
Q ss_pred CCCCcccccccCCcccccC-CCCCccchhhHHHHhccCCCCcccccccc
Q 032728 87 DRNDECGICMENCTKMVLP-NCGHSLCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 87 ~~~~~C~IC~~~~~~~~l~-~CgH~FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
+++..|+||++.+.+++.. +|||.||..||..|+..+..||.||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 4456899999988777664 79999999999999998899999998874
No 31
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.36 E-value=1.8e-13 Score=94.08 Aligned_cols=47 Identities=19% Similarity=0.360 Sum_probs=40.6
Q ss_pred CCCcccccccCCcccccCCCCCccchhhHHHHhcc-CCCCcccccccc
Q 032728 88 RNDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR-SQSCLFAVAAYR 134 (135)
Q Consensus 88 ~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~-~~~CP~CR~~i~ 134 (135)
++..|+||++.+.+++.++|||.||..||..|+.. ...||+||.++.
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG 98 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCC
Confidence 34589999999888877789999999999999975 459999999874
No 32
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.36 E-value=2.3e-13 Score=83.41 Aligned_cols=46 Identities=24% Similarity=0.557 Sum_probs=37.3
Q ss_pred CCccccccc-CCccc----ccCCCCCccchhhHHHHhcc-CCCCcccccccc
Q 032728 89 NDECGICME-NCTKM----VLPNCGHSLCVNCFHDWNAR-SQSCLFAVAAYR 134 (135)
Q Consensus 89 ~~~C~IC~~-~~~~~----~l~~CgH~FC~~Ci~~~~~~-~~~CP~CR~~i~ 134 (135)
+..|+||++ ....+ ++++|||.||..|+.+|+.. +..||+||.++.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 558999998 65544 34569999999999999654 568999999875
No 33
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=7.4e-13 Score=78.99 Aligned_cols=45 Identities=29% Similarity=0.823 Sum_probs=37.7
Q ss_pred CCCCCCcccccccCCcccccCCCCCccchhhHHHHhc---cCCCCccc
Q 032728 85 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNA---RSQSCLFA 129 (135)
Q Consensus 85 ~~~~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~---~~~~CP~C 129 (135)
+.+++..|+||++...+++.++|||.||..||.+|+. ....||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3456679999998888877778999999999999954 46789998
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.35 E-value=2.6e-13 Score=89.73 Aligned_cols=46 Identities=22% Similarity=0.560 Sum_probs=40.1
Q ss_pred CCcccccccCCcccccC-CCCCccchhhHHHHhccCCCCcccccccc
Q 032728 89 NDECGICMENCTKMVLP-NCGHSLCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 89 ~~~C~IC~~~~~~~~l~-~CgH~FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
+..|+||++.+.+++.. +|||.||..|+..|+..+..||+||..+.
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 45899999887777554 79999999999999998899999998874
No 35
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.34 E-value=7.1e-13 Score=85.94 Aligned_cols=50 Identities=12% Similarity=-0.087 Sum_probs=44.5
Q ss_pred CCCCCCcccccccCCcccccCCCCCccchhhHHHHhccCCCCcccccccc
Q 032728 85 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 85 ~~~~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
+..++..|+||++.+.+|+.++|||+||..||..|+....+||+||.++.
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 34567899999999999888789999999999999988889999998874
No 36
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.32 E-value=2e-12 Score=82.73 Aligned_cols=50 Identities=24% Similarity=0.550 Sum_probs=39.0
Q ss_pred CCCCCCcccccccCCc--ccccCC--CCCccchhhHHHHhcc-CCCCcccccccc
Q 032728 85 DLDRNDECGICMENCT--KMVLPN--CGHSLCVNCFHDWNAR-SQSCLFAVAAYR 134 (135)
Q Consensus 85 ~~~~~~~C~IC~~~~~--~~~l~~--CgH~FC~~Ci~~~~~~-~~~CP~CR~~i~ 134 (135)
+.+++..|+||++..+ ++...+ |||.||..|+..++.. ...||.||.++.
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 61 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence 3567789999998763 333333 9999999999998743 679999999875
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.31 E-value=5.6e-13 Score=91.40 Aligned_cols=48 Identities=25% Similarity=0.649 Sum_probs=41.5
Q ss_pred CCCCcccccccCCccc-------ccCCCCCccchhhHHHHhccCCCCcccccccc
Q 032728 87 DRNDECGICMENCTKM-------VLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 87 ~~~~~C~IC~~~~~~~-------~l~~CgH~FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
.++..|+||++.+.++ +.++|||.||..||.+|+..+..||+||..+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 59 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCc
Confidence 3456899999887665 66779999999999999999899999999875
No 38
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.31 E-value=1.2e-12 Score=87.49 Aligned_cols=50 Identities=12% Similarity=-0.084 Sum_probs=44.6
Q ss_pred CCCCCCcccccccCCcccccCCCCCccchhhHHHHhccCCCCcccccccc
Q 032728 85 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 85 ~~~~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
+..++..|+||++.+.+|+.++|||+||..||..|+....+||+||.++.
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 34567899999999999888779999999999999988889999999875
No 39
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.30 E-value=6e-13 Score=90.80 Aligned_cols=50 Identities=24% Similarity=0.509 Sum_probs=42.8
Q ss_pred CCCCCCcccccccCCcccccCCCCCccchhhHHHHhccCC-CCcccccccc
Q 032728 85 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQ-SCLFAVAAYR 134 (135)
Q Consensus 85 ~~~~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~~~-~CP~CR~~i~ 134 (135)
..+++..|+||++.+.+++.++|||.||..||.+|+..+. .||+||.++.
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence 3455679999999988887778999999999999998754 9999999875
No 40
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.29 E-value=2e-12 Score=86.01 Aligned_cols=50 Identities=10% Similarity=-0.111 Sum_probs=44.7
Q ss_pred CCCCCCcccccccCCcccccCCCC-CccchhhHHHHhccCCCCcccccccc
Q 032728 85 DLDRNDECGICMENCTKMVLPNCG-HSLCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 85 ~~~~~~~C~IC~~~~~~~~l~~Cg-H~FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
+..++..|+||++.+.+|+.++|| |+||+.||.+|+.....||+||.++.
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 345678999999999999888899 99999999999988889999999875
No 41
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.28 E-value=3.1e-13 Score=91.61 Aligned_cols=47 Identities=34% Similarity=0.658 Sum_probs=40.6
Q ss_pred CCCCcccccccCCcccccCCCCCccchhhHHHHhcc-CCCCccccccc
Q 032728 87 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR-SQSCLFAVAAY 133 (135)
Q Consensus 87 ~~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~-~~~CP~CR~~i 133 (135)
.++..|+||++.+.+++.++|||.||..||..|+.. ...||+||..+
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBC
T ss_pred CCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCccc
Confidence 345689999998888777779999999999999976 67999999876
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.28 E-value=1.7e-12 Score=87.09 Aligned_cols=46 Identities=24% Similarity=0.496 Sum_probs=39.7
Q ss_pred CCcccccccCCcccccCCCCCccchhhHHHHhccC---CCCcccccccc
Q 032728 89 NDECGICMENCTKMVLPNCGHSLCVNCFHDWNARS---QSCLFAVAAYR 134 (135)
Q Consensus 89 ~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~~---~~CP~CR~~i~ 134 (135)
...|+||++...+++.++|||.||..|+..|+..+ ..||+||.++.
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 34799999988887777899999999999999764 48999999875
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.27 E-value=1.3e-12 Score=93.08 Aligned_cols=47 Identities=21% Similarity=0.366 Sum_probs=41.1
Q ss_pred CCCcccccccCCcccccCCCCCccchhhHHHHhccC-CCCcccccccc
Q 032728 88 RNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARS-QSCLFAVAAYR 134 (135)
Q Consensus 88 ~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~~-~~CP~CR~~i~ 134 (135)
++..|+||++.+.+++.++|||.||..||..|+... ..||+||.++.
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLG 124 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCC
Confidence 346899999998888878899999999999999865 48999999875
No 44
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.27 E-value=9.7e-13 Score=80.96 Aligned_cols=48 Identities=19% Similarity=0.462 Sum_probs=41.2
Q ss_pred CCCCcccccccCCcccccC--CCCCc-cchhhHHHHhccCCCCcccccccc
Q 032728 87 DRNDECGICMENCTKMVLP--NCGHS-LCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 87 ~~~~~C~IC~~~~~~~~l~--~CgH~-FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
+++..|.||++...++++. +|||. ||..|+..|...+..||+||+++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 3455899999988887654 69998 899999999988889999999875
No 45
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.27 E-value=2.5e-12 Score=86.82 Aligned_cols=46 Identities=22% Similarity=0.599 Sum_probs=37.9
Q ss_pred CCCcccccccCCcc------------------cccCCCCCccchhhHHHHhccCCCCccccccc
Q 032728 88 RNDECGICMENCTK------------------MVLPNCGHSLCVNCFHDWNARSQSCLFAVAAY 133 (135)
Q Consensus 88 ~~~~C~IC~~~~~~------------------~~l~~CgH~FC~~Ci~~~~~~~~~CP~CR~~i 133 (135)
++..|+||++.+.. .++++|||.||..||.+|+..+.+||+||+.+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 35689999966443 23456999999999999999999999999985
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.26 E-value=1.4e-12 Score=88.53 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=40.9
Q ss_pred CCcccccccCCcccccCCCCCccchhhHHHHhcc-CCCCcccccccc
Q 032728 89 NDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR-SQSCLFAVAAYR 134 (135)
Q Consensus 89 ~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~-~~~CP~CR~~i~ 134 (135)
+..|+||++.+.+++.++|||.||..||.+|+.. ...||+||.++.
T Consensus 23 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 23 SISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69 (116)
T ss_dssp HTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence 4589999999888877889999999999999986 679999999874
No 47
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.25 E-value=1.2e-12 Score=93.88 Aligned_cols=47 Identities=17% Similarity=0.429 Sum_probs=40.1
Q ss_pred CCCcccccccCCcccccC-CCCCccchhhHHHHhcc-CCCCcccccccc
Q 032728 88 RNDECGICMENCTKMVLP-NCGHSLCVNCFHDWNAR-SQSCLFAVAAYR 134 (135)
Q Consensus 88 ~~~~C~IC~~~~~~~~l~-~CgH~FC~~Ci~~~~~~-~~~CP~CR~~i~ 134 (135)
++..|+||++.+.+++.. +|||.||..||..|+.. ...||+||.++.
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 345899999888777654 79999999999999987 778999998873
No 48
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.24 E-value=1.5e-12 Score=91.81 Aligned_cols=49 Identities=20% Similarity=0.466 Sum_probs=42.2
Q ss_pred CCCCCCcccccccCCcccccCCCCCccchhhHHHHhccCC-CCccccccc
Q 032728 85 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQ-SCLFAVAAY 133 (135)
Q Consensus 85 ~~~~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~~~-~CP~CR~~i 133 (135)
.++++..|+||++.+.+++.++|||.||..||.+|+.... .||+||.++
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 3466779999999988888888999999999999998654 899999864
No 49
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.24 E-value=2.3e-12 Score=77.12 Aligned_cols=45 Identities=22% Similarity=0.440 Sum_probs=37.9
Q ss_pred CCCCcccccccCCcccccCCCCCccchhhHHHHhccCCCCcccccccc
Q 032728 87 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 87 ~~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
+++..|+||++.+.+++.++|||.||..|+..| ...||+||+.+.
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence 456689999998888777779999999999874 568999999874
No 50
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.22 E-value=2.5e-12 Score=78.86 Aligned_cols=46 Identities=17% Similarity=0.411 Sum_probs=39.6
Q ss_pred CCcccccccCCcccccC--CCCCc-cchhhHHHHhccCCCCcccccccc
Q 032728 89 NDECGICMENCTKMVLP--NCGHS-LCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 89 ~~~C~IC~~~~~~~~l~--~CgH~-FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
+..|+||++...++++. +|||. ||..|+..|...+..||+||+++.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 45899999988776553 69998 999999999888889999999875
No 51
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.22 E-value=2.8e-12 Score=87.30 Aligned_cols=45 Identities=22% Similarity=0.459 Sum_probs=39.5
Q ss_pred CCCcccccccCCcccccC-CCCCccchhhHHHHhccCCCCcccccccc
Q 032728 88 RNDECGICMENCTKMVLP-NCGHSLCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 88 ~~~~C~IC~~~~~~~~l~-~CgH~FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
++..|+||++.+.+++.+ +|||+||..||..|+. ..||+||.++.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 356899999998888776 8999999999999987 78999998874
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.19 E-value=3.3e-12 Score=87.48 Aligned_cols=48 Identities=25% Similarity=0.649 Sum_probs=41.0
Q ss_pred CCCCcccccccCCccc-------ccCCCCCccchhhHHHHhccCCCCcccccccc
Q 032728 87 DRNDECGICMENCTKM-------VLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 87 ~~~~~C~IC~~~~~~~-------~l~~CgH~FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
++...|+||++....+ +.++|||.||..||.+|+..+++||+||.++.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 4566899999876543 56679999999999999999999999999875
No 53
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.18 E-value=2.9e-12 Score=80.81 Aligned_cols=42 Identities=26% Similarity=0.660 Sum_probs=37.4
Q ss_pred CCcccccccCCcccccCCCCCc-cchhhHHHHhccCCCCcccccccc
Q 032728 89 NDECGICMENCTKMVLPNCGHS-LCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 89 ~~~C~IC~~~~~~~~l~~CgH~-FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
+..|+||++...++++.+|||. ||..|+..| ..||+||.++.
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 3489999999888888779999 999999998 79999999875
No 54
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.17 E-value=1.3e-11 Score=94.04 Aligned_cols=50 Identities=10% Similarity=-0.005 Sum_probs=42.9
Q ss_pred CCCCCCcccccccCCcccccCCCCCccchhhHHHHhcc-CCCCcccccccc
Q 032728 85 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR-SQSCLFAVAAYR 134 (135)
Q Consensus 85 ~~~~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~-~~~CP~CR~~i~ 134 (135)
+..++..|+||++.+.+|+.++|||+||..||..|+.. +.+||+||.++.
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 34457799999999999988889999999999999976 445999999874
No 55
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.13 E-value=1.6e-11 Score=88.40 Aligned_cols=50 Identities=24% Similarity=0.524 Sum_probs=42.9
Q ss_pred CCCCCCcccccccCCcccccCCCCCccchhhHHHHhccC-CCCcccccccc
Q 032728 85 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARS-QSCLFAVAAYR 134 (135)
Q Consensus 85 ~~~~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~~-~~CP~CR~~i~ 134 (135)
+++++..|+||++.+.+++.++|||.||..||.+|+..+ ..||.||.++.
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence 345667999999998888888899999999999998764 59999998874
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.13 E-value=2.4e-11 Score=98.24 Aligned_cols=46 Identities=30% Similarity=0.820 Sum_probs=41.3
Q ss_pred CCcccccccCCcccccCCCCCccchhhHHHHhc-cCCCCcccccccc
Q 032728 89 NDECGICMENCTKMVLPNCGHSLCVNCFHDWNA-RSQSCLFAVAAYR 134 (135)
Q Consensus 89 ~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~-~~~~CP~CR~~i~ 134 (135)
...|+||++...+++.++|||.||..|+..|+. ....||+||+++.
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence 468999999988888778999999999999998 6789999999875
No 57
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.10 E-value=9e-12 Score=85.48 Aligned_cols=45 Identities=22% Similarity=0.627 Sum_probs=0.5
Q ss_pred CCcccccccCCcc------------------cccCCCCCccchhhHHHHhccCCCCccccccc
Q 032728 89 NDECGICMENCTK------------------MVLPNCGHSLCVNCFHDWNARSQSCLFAVAAY 133 (135)
Q Consensus 89 ~~~C~IC~~~~~~------------------~~l~~CgH~FC~~Ci~~~~~~~~~CP~CR~~i 133 (135)
+..|+||++.+.. .+.++|||.||..||.+|+..+.+||+||+++
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp C--------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 4589999966433 23346999999999999999999999999884
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=3.2e-11 Score=79.35 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=39.4
Q ss_pred CCCCcccccccCCcccccC-CCCCccchhhHHHHhccC------CCCcc--cccc
Q 032728 87 DRNDECGICMENCTKMVLP-NCGHSLCVNCFHDWNARS------QSCLF--AVAA 132 (135)
Q Consensus 87 ~~~~~C~IC~~~~~~~~l~-~CgH~FC~~Ci~~~~~~~------~~CP~--CR~~ 132 (135)
.++..|+||++.+.+|+.. .|||+||..||..|+... ..||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4567999999999998887 599999999999999753 48999 9855
No 59
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.08 E-value=9.9e-11 Score=85.69 Aligned_cols=52 Identities=8% Similarity=-0.006 Sum_probs=44.5
Q ss_pred ccCCCCCCcccccccCCcccccCCCCCccchhhHHHHhcc-CCCCcccccccc
Q 032728 83 DKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR-SQSCLFAVAAYR 134 (135)
Q Consensus 83 ~~~~~~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~-~~~CP~CR~~i~ 134 (135)
..+..++..||||++.+.+|+.++|||+||..||..|+.. +.+||+||.++.
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 3455677899999999999988889999999999999976 347999998874
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=7.6e-11 Score=74.29 Aligned_cols=41 Identities=27% Similarity=0.669 Sum_probs=35.9
Q ss_pred CcccccccCCcccccCCCCCc-cchhhHHHHhccCCCCcccccccc
Q 032728 90 DECGICMENCTKMVLPNCGHS-LCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 90 ~~C~IC~~~~~~~~l~~CgH~-FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
..|+||++...++++.+|||. ||..|+... ..||+||.++.
T Consensus 26 ~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 67 (75)
T 2ecg_A 26 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 67 (75)
T ss_dssp HSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----SBCTTTCCBCC
T ss_pred CCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----CCCccCCceec
Confidence 479999999888888789999 999999653 68999999875
No 61
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.2e-10 Score=72.42 Aligned_cols=44 Identities=25% Similarity=0.617 Sum_probs=38.0
Q ss_pred CCCCcccccccCCcccccCCCCCc-cchhhHHHHhccCCCCcccccccc
Q 032728 87 DRNDECGICMENCTKMVLPNCGHS-LCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 87 ~~~~~C~IC~~~~~~~~l~~CgH~-FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
+++..|.||++...++++.+|||. ||..|+.. ...||+||+++.
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~ 57 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQ 57 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchh
Confidence 446689999999888888779998 99999984 369999999875
No 62
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.98 E-value=6.2e-11 Score=75.75 Aligned_cols=41 Identities=24% Similarity=0.553 Sum_probs=36.1
Q ss_pred CcccccccCCcccccCCCCCc-cchhhHHHHhccCCCCcccccccc
Q 032728 90 DECGICMENCTKMVLPNCGHS-LCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 90 ~~C~IC~~~~~~~~l~~CgH~-FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
..|+||++...++++.+|||. ||..|+..|. .||+||.++.
T Consensus 19 ~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~ 60 (79)
T 2yho_A 19 MLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVE 60 (79)
T ss_dssp TBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS----BCTTTCCBCC
T ss_pred CEeEEeCcccCcEEEECCCCHHHHHHHHHhcC----cCCCCCchhh
Confidence 479999999888887779998 9999998773 9999999875
No 63
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=3.3e-10 Score=72.65 Aligned_cols=48 Identities=21% Similarity=0.537 Sum_probs=36.6
Q ss_pred CCCCcccccccCC--cccccCCCC-----CccchhhHHHHhccC--CCCcccccccc
Q 032728 87 DRNDECGICMENC--TKMVLPNCG-----HSLCVNCFHDWNARS--QSCLFAVAAYR 134 (135)
Q Consensus 87 ~~~~~C~IC~~~~--~~~~l~~Cg-----H~FC~~Ci~~~~~~~--~~CP~CR~~i~ 134 (135)
.++..|.||++.+ ..+...+|+ |.||..||.+|+..+ .+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 4456899999543 223344596 999999999999864 59999998874
No 64
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=2.5e-09 Score=67.67 Aligned_cols=46 Identities=15% Similarity=0.388 Sum_probs=37.1
Q ss_pred CCcccccccCCcc-cccCCCCCccchhhHHHHhccC--CCCcccccccc
Q 032728 89 NDECGICMENCTK-MVLPNCGHSLCVNCFHDWNARS--QSCLFAVAAYR 134 (135)
Q Consensus 89 ~~~C~IC~~~~~~-~~l~~CgH~FC~~Ci~~~~~~~--~~CP~CR~~i~ 134 (135)
...|.||++...+ ..-+.|+|.||..||.+|+..+ ..||+||+++.
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 4589999977544 2234699999999999999876 79999998753
No 65
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.84 E-value=1.1e-09 Score=84.21 Aligned_cols=46 Identities=11% Similarity=0.246 Sum_probs=39.4
Q ss_pred CCcccccccCCccccc-CCCCCccchhhHHHHhccC--CCCcc--cccccc
Q 032728 89 NDECGICMENCTKMVL-PNCGHSLCVNCFHDWNARS--QSCLF--AVAAYR 134 (135)
Q Consensus 89 ~~~C~IC~~~~~~~~l-~~CgH~FC~~Ci~~~~~~~--~~CP~--CR~~i~ 134 (135)
+..||||++.+.+|+. ..|||+||..||..|+..+ ..||+ ||..+.
T Consensus 181 el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 181 ELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 4589999999999886 4899999999999998753 57999 998764
No 66
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.81 E-value=7.3e-10 Score=88.42 Aligned_cols=43 Identities=23% Similarity=0.689 Sum_probs=38.3
Q ss_pred CCCcccccccCCcccccCCCCCc-cchhhHHHHhccCCCCcccccccc
Q 032728 88 RNDECGICMENCTKMVLPNCGHS-LCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 88 ~~~~C~IC~~~~~~~~l~~CgH~-FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
++..|+||++....+++.+|||. ||..|+..| ..||+||.++.
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 45689999999988888779999 999999988 68999999875
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.75 E-value=3.1e-09 Score=69.41 Aligned_cols=45 Identities=16% Similarity=0.462 Sum_probs=34.9
Q ss_pred CCCcccccccCCccccc---CCCCCccchhhHHHHhcc--------CCCCcc--cccc
Q 032728 88 RNDECGICMENCTKMVL---PNCGHSLCVNCFHDWNAR--------SQSCLF--AVAA 132 (135)
Q Consensus 88 ~~~~C~IC~~~~~~~~l---~~CgH~FC~~Ci~~~~~~--------~~~CP~--CR~~ 132 (135)
+...|+||++....+.. .+|||.||..|+..++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 35689999987655432 369999999999998752 248999 9987
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.63 E-value=8.2e-09 Score=62.80 Aligned_cols=45 Identities=9% Similarity=0.039 Sum_probs=40.2
Q ss_pred CcccccccCCcccccC-CCCCccchhhHHHHhccCCCCcccccccc
Q 032728 90 DECGICMENCTKMVLP-NCGHSLCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 90 ~~C~IC~~~~~~~~l~-~CgH~FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
..|+|+++.+.+++.. .+||+|++.||.+|+..+..||+.+.++.
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 4799999998888776 89999999999999988778999998874
No 69
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.57 E-value=1.6e-08 Score=80.56 Aligned_cols=47 Identities=19% Similarity=0.409 Sum_probs=35.9
Q ss_pred CCCcccccccCCcc-cc-------cCCCCCccchhhHHHHhccC-----------CCCcccccccc
Q 032728 88 RNDECGICMENCTK-MV-------LPNCGHSLCVNCFHDWNARS-----------QSCLFAVAAYR 134 (135)
Q Consensus 88 ~~~~C~IC~~~~~~-~~-------l~~CgH~FC~~Ci~~~~~~~-----------~~CP~CR~~i~ 134 (135)
...+|+||++...+ .. .++|||.||..|+.+|+... ..||.||+++.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 34589999976443 21 24799999999999999641 47999999864
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.54 E-value=6.4e-08 Score=58.63 Aligned_cols=48 Identities=21% Similarity=0.528 Sum_probs=36.1
Q ss_pred CCCCcccccccCCcccccCCCC--C---ccchhhHHHHhcc--CCCCcccccccc
Q 032728 87 DRNDECGICMENCTKMVLPNCG--H---SLCVNCFHDWNAR--SQSCLFAVAAYR 134 (135)
Q Consensus 87 ~~~~~C~IC~~~~~~~~l~~Cg--H---~FC~~Ci~~~~~~--~~~CP~CR~~i~ 134 (135)
+++..|.||++...++...+|. | .||..|+.+|+.. +.+||+|+.++.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4566899999554443344464 4 8999999999864 579999999874
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.28 E-value=3.6e-07 Score=60.55 Aligned_cols=44 Identities=18% Similarity=0.439 Sum_probs=33.5
Q ss_pred cccccccCCcc--cccCCCCCccchhhHHHHhcc-CCCCccccccccC
Q 032728 91 ECGICMENCTK--MVLPNCGHSLCVNCFHDWNAR-SQSCLFAVAAYRE 135 (135)
Q Consensus 91 ~C~IC~~~~~~--~~l~~CgH~FC~~Ci~~~~~~-~~~CP~CR~~i~~ 135 (135)
-|++|--+... ...| |+|.||++|+..|.++ .+.||.|+.++.|
T Consensus 3 fC~~C~~Pi~iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 47777644332 3445 9999999999999754 6899999998864
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.37 E-value=0.00016 Score=54.70 Aligned_cols=45 Identities=16% Similarity=0.403 Sum_probs=35.9
Q ss_pred CCcccccccCCcc-cccCCCCCccchhhHHHHhccC--CCCccccccc
Q 032728 89 NDECGICMENCTK-MVLPNCGHSLCVNCFHDWNARS--QSCLFAVAAY 133 (135)
Q Consensus 89 ~~~C~IC~~~~~~-~~l~~CgH~FC~~Ci~~~~~~~--~~CP~CR~~i 133 (135)
-..|.||.+...+ ..-++|+|.||..|+..|+... ..||.|+.+.
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 5589999987554 3345699999999999998764 4999998764
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.70 E-value=0.00071 Score=43.96 Aligned_cols=33 Identities=21% Similarity=0.528 Sum_probs=26.1
Q ss_pred CCCcccccccC-Cccccc--CCCCCccchhhHHH-Hh
Q 032728 88 RNDECGICMEN-CTKMVL--PNCGHSLCVNCFHD-WN 120 (135)
Q Consensus 88 ~~~~C~IC~~~-~~~~~l--~~CgH~FC~~Ci~~-~~ 120 (135)
++..|+||.+. ..+++. ..|+|.||..|+.. |.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 35689999964 666665 66999999999998 54
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.53 E-value=0.068 Score=34.79 Aligned_cols=45 Identities=24% Similarity=0.502 Sum_probs=35.1
Q ss_pred CCCcccccccCCcccccCCC-CCccchhhHHHHhccCCCCcccccccc
Q 032728 88 RNDECGICMENCTKMVLPNC-GHSLCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 88 ~~~~C~IC~~~~~~~~l~~C-gH~FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
....|-.|--..+..+ .| .|-+|..|+...+..+..||+|..++.
T Consensus 27 G~~nCKsCWf~~k~LV--~C~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 27 GPQFCKSCWFENKGLV--ECNNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp CCCCCCSSCSCCSSEE--ECSSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred CcccChhhccccCCee--eecchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 3447888875544333 35 799999999999999999999998764
No 75
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=92.84 E-value=0.096 Score=46.64 Aligned_cols=50 Identities=6% Similarity=-0.053 Sum_probs=42.8
Q ss_pred CCCCCCcccccccCCcccccCCCC-CccchhhHHHHhccCCCCcccccccc
Q 032728 85 DLDRNDECGICMENCTKMVLPNCG-HSLCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 85 ~~~~~~~C~IC~~~~~~~~l~~Cg-H~FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
+.-++..|||-.+...+|+..+-| +++=+..|.+|+....+||+=|.++.
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~ 937 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLK 937 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCC
Confidence 445678999999999988887787 58999999999988889999887764
No 76
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.27 E-value=0.13 Score=31.15 Aligned_cols=45 Identities=13% Similarity=0.398 Sum_probs=31.2
Q ss_pred CCCcccccccCCcccccCCCCCccchhhHHHHhcc----CCCCcccccc
Q 032728 88 RNDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR----SQSCLFAVAA 132 (135)
Q Consensus 88 ~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~----~~~CP~CR~~ 132 (135)
....|.||.+...-..--.|...||..|+...+.. .-.||.|.+.
T Consensus 11 ~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 34579999865432222458889999999866544 2489999754
No 77
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=90.63 E-value=0.49 Score=30.14 Aligned_cols=34 Identities=12% Similarity=0.354 Sum_probs=24.5
Q ss_pred CCCCCCcccccccCCcc---cccCCCCCccchhhHHHH
Q 032728 85 DLDRNDECGICMENCTK---MVLPNCGHSLCVNCFHDW 119 (135)
Q Consensus 85 ~~~~~~~C~IC~~~~~~---~~l~~CgH~FC~~Ci~~~ 119 (135)
++..+..|.||-..... +-.. |+-+||..|+.+.
T Consensus 11 ~~~~D~~C~VC~~~t~~~l~pCRv-C~RvfH~~CL~r~ 47 (89)
T 1wil_A 11 PVVNDEMCDVCEVWTAESLFPCRV-CTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTTCCCCSSCCSSCSS-SSSCCCHHHHHHH
T ss_pred CCCCCcccCccccccccceecccc-ccccccHhhcccc
Confidence 34567799999854333 3333 7899999999985
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=88.92 E-value=0.31 Score=28.72 Aligned_cols=48 Identities=17% Similarity=0.398 Sum_probs=31.4
Q ss_pred cCCCCCCcccccccCCcccccCCCCCccchhhHHHHhcc----CCCCccccc
Q 032728 84 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR----SQSCLFAVA 131 (135)
Q Consensus 84 ~~~~~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~----~~~CP~CR~ 131 (135)
.+...+..|.+|.+...-..--.|...||..|+..-+.. .-.||.|+.
T Consensus 6 ~~~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 6 YETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CSSCCCSSCTTTSCCSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred ccCCCCCCCccCCCCCcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 344556789999864322222357779999999864332 348999965
No 79
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=87.61 E-value=3.4 Score=27.71 Aligned_cols=30 Identities=20% Similarity=0.573 Sum_probs=21.2
Q ss_pred CCcccccccCCccc----ccCCCCCccchhhHHH
Q 032728 89 NDECGICMENCTKM----VLPNCGHSLCVNCFHD 118 (135)
Q Consensus 89 ~~~C~IC~~~~~~~----~l~~CgH~FC~~Ci~~ 118 (135)
...|.+|...+... ---.||+.||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 34799998765432 1236999999999764
No 80
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=86.96 E-value=0.34 Score=28.54 Aligned_cols=47 Identities=13% Similarity=0.309 Sum_probs=30.2
Q ss_pred CCCCcccccccCCcccccCCCCCccchhhHHHHhcc----CCCCccccccc
Q 032728 87 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR----SQSCLFAVAAY 133 (135)
Q Consensus 87 ~~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~----~~~CP~CR~~i 133 (135)
..+..|.+|.+...-..--.|...||..|+..-+.. .-.||.|+...
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 445689999864322222357778999998853332 34799997653
No 81
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=85.19 E-value=1.3 Score=28.37 Aligned_cols=46 Identities=22% Similarity=0.596 Sum_probs=33.2
Q ss_pred CcccccccCC-------cccccCCCCCccchhhHH-HHhccCCCCccccccccC
Q 032728 90 DECGICMENC-------TKMVLPNCGHSLCVNCFH-DWNARSQSCLFAVAAYRE 135 (135)
Q Consensus 90 ~~C~IC~~~~-------~~~~l~~CgH~FC~~Ci~-~~~~~~~~CP~CR~~i~~ 135 (135)
..|.||-+.. .-..--.|+--.|..|.+ ...+....||.|++.++|
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 4799998541 112334588889999997 455668899999998875
No 82
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.88 E-value=0.17 Score=29.26 Aligned_cols=47 Identities=13% Similarity=0.313 Sum_probs=30.0
Q ss_pred CCCCCCcccccccCCcccccCCCCCccchhhHHHHhcc----CCCCccccc
Q 032728 85 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR----SQSCLFAVA 131 (135)
Q Consensus 85 ~~~~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~----~~~CP~CR~ 131 (135)
...++..|.+|.+...-..--.|...||..|+.+-+.. .-.||.|..
T Consensus 5 ~~~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 5 SSGHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSSCCSCSSSCCSSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred cCCCCCCCccCCCCCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 34556689999865322222357788999998753332 236888854
No 83
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=83.74 E-value=1.1 Score=28.28 Aligned_cols=36 Identities=22% Similarity=0.491 Sum_probs=25.1
Q ss_pred CCCCcccccccCCcccccCCC----CCccchhhHHHHhcc
Q 032728 87 DRNDECGICMENCTKMVLPNC----GHSLCVNCFHDWNAR 122 (135)
Q Consensus 87 ~~~~~C~IC~~~~~~~~l~~C----gH~FC~~Ci~~~~~~ 122 (135)
.....|.+|.+...+.-.-.| +|.||..|-+...+.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 345589999987655322223 899999999987653
No 84
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=82.62 E-value=0.33 Score=35.32 Aligned_cols=46 Identities=15% Similarity=0.358 Sum_probs=30.6
Q ss_pred CCCCcccccccCCcccccCCCCCccchhhHHHHhcc----CCCCcccccc
Q 032728 87 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR----SQSCLFAVAA 132 (135)
Q Consensus 87 ~~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~----~~~CP~CR~~ 132 (135)
..+..|.+|.+...-..--.|...||..|+.+-+.. .-.||.|+..
T Consensus 5 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 5 PNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 345679999855432222458889999998754432 2479999764
No 85
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=80.78 E-value=2.5 Score=29.19 Aligned_cols=47 Identities=15% Similarity=0.391 Sum_probs=32.4
Q ss_pred CCCCCCcccccccCCcccccCCCCCccchhhHHHHhc-----------cCCCCccccc
Q 032728 85 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNA-----------RSQSCLFAVA 131 (135)
Q Consensus 85 ~~~~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~-----------~~~~CP~CR~ 131 (135)
+...+..|.+|.+.-.-..--.|-..||..|+.+-+. ..-.||.|+.
T Consensus 59 ~Dg~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 59 SDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TTSCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3445678999997653333335888999999996442 1347999974
No 86
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=80.74 E-value=0.59 Score=33.25 Aligned_cols=45 Identities=16% Similarity=0.385 Sum_probs=30.0
Q ss_pred CCCcccccccCCcccccCCCCCccchhhHHHHhcc----CCCCcccccc
Q 032728 88 RNDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR----SQSCLFAVAA 132 (135)
Q Consensus 88 ~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~----~~~CP~CR~~ 132 (135)
++..|.+|.+...-..--.|...||..|+.+-+.. .-.||.|+..
T Consensus 3 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 34579999865432222457889999998754432 3479999754
No 87
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=80.73 E-value=0.19 Score=31.27 Aligned_cols=20 Identities=25% Similarity=0.901 Sum_probs=16.2
Q ss_pred CCCCccchhhHHHHhccCCCCc
Q 032728 106 NCGHSLCVNCFHDWNARSQSCL 127 (135)
Q Consensus 106 ~CgH~FC~~Ci~~~~~~~~~CP 127 (135)
.|||.||..|...|-. .+|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 6999999999998855 4554
No 88
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=80.34 E-value=3.2 Score=28.27 Aligned_cols=31 Identities=26% Similarity=0.637 Sum_probs=22.4
Q ss_pred CCCCcccccccCCc-----ccccCCCCCccchhhHH
Q 032728 87 DRNDECGICMENCT-----KMVLPNCGHSLCVNCFH 117 (135)
Q Consensus 87 ~~~~~C~IC~~~~~-----~~~l~~CgH~FC~~Ci~ 117 (135)
.++..|.+|...+. ...-..|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 45678999996542 23445799999999965
No 89
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=79.54 E-value=3.5 Score=28.01 Aligned_cols=47 Identities=15% Similarity=0.386 Sum_probs=31.5
Q ss_pred CCCCCCcccccccCCcccccCCCCCccchhhHHHHh-----------ccCCCCccccc
Q 032728 85 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWN-----------ARSQSCLFAVA 131 (135)
Q Consensus 85 ~~~~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~-----------~~~~~CP~CR~ 131 (135)
+...+..|.+|.+.-.-..--.|-..||..|+.+-+ ...-.|++|+.
T Consensus 53 ~Dg~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 53 SDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TTSCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 344556799999664332223588999999998642 12358999964
No 90
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=79.46 E-value=1.3 Score=26.17 Aligned_cols=39 Identities=23% Similarity=0.367 Sum_probs=27.8
Q ss_pred cccccccCCcc---cccCCCCCccchhhHHHHhccCCCCccc
Q 032728 91 ECGICMENCTK---MVLPNCGHSLCVNCFHDWNARSQSCLFA 129 (135)
Q Consensus 91 ~C~IC~~~~~~---~~l~~CgH~FC~~Ci~~~~~~~~~CP~C 129 (135)
.|-.|...+.+ ..-+.|++.||.+|=.-.-+.-..||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 58888865533 3357899999999966444444689987
No 91
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=76.86 E-value=0.65 Score=27.38 Aligned_cols=34 Identities=32% Similarity=0.766 Sum_probs=22.5
Q ss_pred CcccccccCCcc------cccCC--CCCccchhhHHHHhccC
Q 032728 90 DECGICMENCTK------MVLPN--CGHSLCVNCFHDWNARS 123 (135)
Q Consensus 90 ~~C~IC~~~~~~------~~l~~--CgH~FC~~Ci~~~~~~~ 123 (135)
..||-|..+... +.-.. |+|.||..|..+|....
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 367777643211 23334 99999999999987653
No 92
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=75.87 E-value=0.55 Score=28.02 Aligned_cols=45 Identities=16% Similarity=0.445 Sum_probs=28.5
Q ss_pred CCCCcccccccCCcccccCCCCCccchhhHHHHhcc----CCCCccccc
Q 032728 87 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR----SQSCLFAVA 131 (135)
Q Consensus 87 ~~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~----~~~CP~CR~ 131 (135)
.++..|.||.+...-..--.|...||..|+.+-+.. .-.||.|..
T Consensus 6 ~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 356689999865322222357778999998753322 336998854
No 93
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=74.23 E-value=2.4 Score=26.38 Aligned_cols=31 Identities=29% Similarity=0.522 Sum_probs=21.7
Q ss_pred CCCcccccccCCccc----ccCCCCCccchhhHHH
Q 032728 88 RNDECGICMENCTKM----VLPNCGHSLCVNCFHD 118 (135)
Q Consensus 88 ~~~~C~IC~~~~~~~----~l~~CgH~FC~~Ci~~ 118 (135)
+...|.+|...+.-. ---.||+.||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 345799998665432 1136999999999764
No 94
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=73.78 E-value=1.6 Score=28.43 Aligned_cols=34 Identities=15% Similarity=0.369 Sum_probs=24.0
Q ss_pred CCCCcccccccCCcc---cccCCCCCccchhhHHHHh
Q 032728 87 DRNDECGICMENCTK---MVLPNCGHSLCVNCFHDWN 120 (135)
Q Consensus 87 ~~~~~C~IC~~~~~~---~~l~~CgH~FC~~Ci~~~~ 120 (135)
.++..|.||.+.... ..-..|+..||..|+....
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~ 41 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV 41 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcc
Confidence 456689999865432 2225689999999997654
No 95
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=73.42 E-value=1.8 Score=27.54 Aligned_cols=46 Identities=15% Similarity=0.335 Sum_probs=29.8
Q ss_pred CCCCCcccccccCCcccccCCCCCccchhhHHHHhcc----CCCCccccc
Q 032728 86 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR----SQSCLFAVA 131 (135)
Q Consensus 86 ~~~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~----~~~CP~CR~ 131 (135)
.+.+..|.+|.+...-..--.|.-.||..|+.+=+.. .-.||.|+.
T Consensus 22 d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 22 DDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CCCCCcCcCcCCCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 3456689999965422222346678999999764433 237999974
No 96
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.66 E-value=2.5 Score=26.22 Aligned_cols=31 Identities=26% Similarity=0.622 Sum_probs=21.4
Q ss_pred CCCcccccccCCcccc----cCCCCCccchhhHHH
Q 032728 88 RNDECGICMENCTKMV----LPNCGHSLCVNCFHD 118 (135)
Q Consensus 88 ~~~~C~IC~~~~~~~~----l~~CgH~FC~~Ci~~ 118 (135)
+...|.+|...+.-.. --.||.+||..|...
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 3447999987654321 136999999999753
No 97
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=71.80 E-value=7.7 Score=26.98 Aligned_cols=30 Identities=17% Similarity=0.537 Sum_probs=22.2
Q ss_pred CCCCcccccccCC-----cccccCCCCCccchhhH
Q 032728 87 DRNDECGICMENC-----TKMVLPNCGHSLCVNCF 116 (135)
Q Consensus 87 ~~~~~C~IC~~~~-----~~~~l~~CgH~FC~~Ci 116 (135)
.++..|.+|...+ ....-.+|.|.+|..|-
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 3567999999653 22344679999999997
No 98
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=71.37 E-value=2.8 Score=25.87 Aligned_cols=30 Identities=27% Similarity=0.686 Sum_probs=21.2
Q ss_pred CCcccccccCCccc----ccCCCCCccchhhHHH
Q 032728 89 NDECGICMENCTKM----VLPNCGHSLCVNCFHD 118 (135)
Q Consensus 89 ~~~C~IC~~~~~~~----~l~~CgH~FC~~Ci~~ 118 (135)
...|.+|...+.-. ---.||+.||..|...
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 44799998665432 1136999999999764
No 99
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=70.41 E-value=3 Score=25.13 Aligned_cols=29 Identities=24% Similarity=0.612 Sum_probs=20.6
Q ss_pred CcccccccCCccc----ccCCCCCccchhhHHH
Q 032728 90 DECGICMENCTKM----VLPNCGHSLCVNCFHD 118 (135)
Q Consensus 90 ~~C~IC~~~~~~~----~l~~CgH~FC~~Ci~~ 118 (135)
..|.+|...+.-. ---.||+.||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 4799998665432 1136999999999753
No 100
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=69.38 E-value=1 Score=26.22 Aligned_cols=45 Identities=13% Similarity=0.336 Sum_probs=28.1
Q ss_pred CCCcccccccCCcccccCCCCCccchhhHHHHhcc----CCCCcccccc
Q 032728 88 RNDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR----SQSCLFAVAA 132 (135)
Q Consensus 88 ~~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~----~~~CP~CR~~ 132 (135)
.+..|.+|.....-..--.|...||..|+.+-+.. .-.||.|...
T Consensus 4 ~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCCSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCCCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 35579999865322222357778999998753322 2368888543
No 101
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=69.35 E-value=3.1 Score=23.05 Aligned_cols=41 Identities=12% Similarity=0.403 Sum_probs=25.5
Q ss_pred cccccccCCcc-ccc--CCCCCccchhhHHHHhcc----CCCCccccc
Q 032728 91 ECGICMENCTK-MVL--PNCGHSLCVNCFHDWNAR----SQSCLFAVA 131 (135)
Q Consensus 91 ~C~IC~~~~~~-~~l--~~CgH~FC~~Ci~~~~~~----~~~CP~CR~ 131 (135)
.|.||...... ..+ -.|...||..|+.+=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 47888754321 112 357779999999643322 347999965
No 102
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=67.40 E-value=4.2 Score=25.57 Aligned_cols=31 Identities=26% Similarity=0.567 Sum_probs=21.5
Q ss_pred CCCcccccccCCccc----ccCCCCCccchhhHHH
Q 032728 88 RNDECGICMENCTKM----VLPNCGHSLCVNCFHD 118 (135)
Q Consensus 88 ~~~~C~IC~~~~~~~----~l~~CgH~FC~~Ci~~ 118 (135)
+...|.+|...+... ---.||++||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 345799998665432 1136999999999754
No 103
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=66.53 E-value=2.6 Score=30.21 Aligned_cols=44 Identities=14% Similarity=0.338 Sum_probs=28.0
Q ss_pred CCcccccccCCcccccCCCCCccchhhHHHHhcc----CCCCcccccc
Q 032728 89 NDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR----SQSCLFAVAA 132 (135)
Q Consensus 89 ~~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~----~~~CP~CR~~ 132 (135)
+..|.+|.+...-..--.|...||..|+.+=+.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 3469999855432222347778999998753322 3479999753
No 104
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=66.31 E-value=3.2 Score=26.14 Aligned_cols=31 Identities=23% Similarity=0.446 Sum_probs=21.5
Q ss_pred CCcccccccCCccc----ccCCCCCccchhhHHHH
Q 032728 89 NDECGICMENCTKM----VLPNCGHSLCVNCFHDW 119 (135)
Q Consensus 89 ~~~C~IC~~~~~~~----~l~~CgH~FC~~Ci~~~ 119 (135)
...|.+|...+.-. --..||+.||..|....
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 34799998655421 22469999999997653
No 105
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=66.22 E-value=1.5 Score=26.46 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=29.7
Q ss_pred CCCcccccccCCcc--ccc-CCCCCccchhhHHHHhc----cCCCCcccccccc
Q 032728 88 RNDECGICMENCTK--MVL-PNCGHSLCVNCFHDWNA----RSQSCLFAVAAYR 134 (135)
Q Consensus 88 ~~~~C~IC~~~~~~--~~l-~~CgH~FC~~Ci~~~~~----~~~~CP~CR~~i~ 134 (135)
+...|.+|...... ++. -.|.-.||..|+..-.. ....||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 34479999855322 222 34777899999874332 2357999976654
No 106
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=64.77 E-value=0.56 Score=29.41 Aligned_cols=17 Identities=35% Similarity=1.189 Sum_probs=14.5
Q ss_pred ccCCCCCccchhhHHHH
Q 032728 103 VLPNCGHSLCVNCFHDW 119 (135)
Q Consensus 103 ~l~~CgH~FC~~Ci~~~ 119 (135)
.-+.|||.||..|-..|
T Consensus 45 ~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 45 TCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp ECTTTCCEECSSSCSBC
T ss_pred EeCCCCCccccccCCch
Confidence 34569999999999988
No 107
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=64.60 E-value=2.4 Score=27.64 Aligned_cols=12 Identities=33% Similarity=1.096 Sum_probs=10.3
Q ss_pred ccchhhHHHHhc
Q 032728 110 SLCVNCFHDWNA 121 (135)
Q Consensus 110 ~FC~~Ci~~~~~ 121 (135)
.||+.|+.+|..
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 389999999974
No 108
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=64.48 E-value=2.3 Score=28.03 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=15.6
Q ss_pred CCCCCccchhhHHHHhccCCCCcccccc
Q 032728 105 PNCGHSLCVNCFHDWNARSQSCLFAVAA 132 (135)
Q Consensus 105 ~~CgH~FC~~Ci~~~~~~~~~CP~CR~~ 132 (135)
.+||+.|. .=......||.|++.
T Consensus 71 ~~CG~~F~-----~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 71 RKCGFVFK-----AEINIPSRCPKCKSE 93 (105)
T ss_dssp TTTCCBCC-----CCSSCCSSCSSSCCC
T ss_pred hhCcCeec-----ccCCCCCCCcCCCCC
Confidence 36999992 112345789999864
No 109
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=64.17 E-value=2.5 Score=27.62 Aligned_cols=12 Identities=33% Similarity=1.204 Sum_probs=10.3
Q ss_pred ccchhhHHHHhc
Q 032728 110 SLCVNCFHDWNA 121 (135)
Q Consensus 110 ~FC~~Ci~~~~~ 121 (135)
.||+.|+.+|..
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 389999999974
No 110
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=60.74 E-value=4.9 Score=26.91 Aligned_cols=42 Identities=17% Similarity=0.521 Sum_probs=23.7
Q ss_pred CCCcccccccCCccc----ccCCCCCccchhhHHHHhccCCCCccc
Q 032728 88 RNDECGICMENCTKM----VLPNCGHSLCVNCFHDWNARSQSCLFA 129 (135)
Q Consensus 88 ~~~~C~IC~~~~~~~----~l~~CgH~FC~~Ci~~~~~~~~~CP~C 129 (135)
+...|..|...++.. ---+||..||..|..........|-.|
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C 63 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLC 63 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHH
Confidence 345799998766432 124699999999965432222344444
No 111
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=59.80 E-value=4.5 Score=29.69 Aligned_cols=32 Identities=25% Similarity=0.621 Sum_probs=22.4
Q ss_pred CCCcccccccCCccc----ccCCCCCccchhhHHHH
Q 032728 88 RNDECGICMENCTKM----VLPNCGHSLCVNCFHDW 119 (135)
Q Consensus 88 ~~~~C~IC~~~~~~~----~l~~CgH~FC~~Ci~~~ 119 (135)
++..|.+|...++-. --..||+.||..|....
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 345899998665432 12469999999997643
No 112
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=59.61 E-value=8.5 Score=23.12 Aligned_cols=47 Identities=15% Similarity=0.245 Sum_probs=27.1
Q ss_pred CCCCcccccccCCcc-ccc-CC--CC-CccchhhHHHHh--ccCCCCcccccccc
Q 032728 87 DRNDECGICMENCTK-MVL-PN--CG-HSLCVNCFHDWN--ARSQSCLFAVAAYR 134 (135)
Q Consensus 87 ~~~~~C~IC~~~~~~-~~l-~~--Cg-H~FC~~Ci~~~~--~~~~~CP~CR~~i~ 134 (135)
.+...| ||...... ++. -+ |. ..||..|+.--. ...-.||.|+..-+
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCSS
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCcccc
Confidence 344567 89864322 222 12 55 589999987111 12348999976543
No 113
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=59.35 E-value=4.3 Score=29.49 Aligned_cols=30 Identities=27% Similarity=0.557 Sum_probs=21.5
Q ss_pred CCcccccccCCccc----ccCCCCCccchhhHHH
Q 032728 89 NDECGICMENCTKM----VLPNCGHSLCVNCFHD 118 (135)
Q Consensus 89 ~~~C~IC~~~~~~~----~l~~CgH~FC~~Ci~~ 118 (135)
+..|.+|...+.-. ---.||+.||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 46899998665431 1136999999999764
No 114
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=58.35 E-value=9.6 Score=26.79 Aligned_cols=38 Identities=24% Similarity=0.510 Sum_probs=25.8
Q ss_pred cCCCCCCcccccccCCccccc--CCCCCccchhhHHHHhc
Q 032728 84 KDLDRNDECGICMENCTKMVL--PNCGHSLCVNCFHDWNA 121 (135)
Q Consensus 84 ~~~~~~~~C~IC~~~~~~~~l--~~CgH~FC~~Ci~~~~~ 121 (135)
.+...+..|.||-+...-..- ++|...||..||...+.
T Consensus 74 DeDG~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 74 DDDGYQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp CTTSSBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred CCCCCcceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcC
Confidence 334456689999865422211 35888999999998764
No 115
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=53.90 E-value=12 Score=30.01 Aligned_cols=45 Identities=20% Similarity=0.573 Sum_probs=30.3
Q ss_pred CCCCCcccccccCCccccc--CCCCCccchhhHHHHhcc----------CCCCcccc
Q 032728 86 LDRNDECGICMENCTKMVL--PNCGHSLCVNCFHDWNAR----------SQSCLFAV 130 (135)
Q Consensus 86 ~~~~~~C~IC~~~~~~~~l--~~CgH~FC~~Ci~~~~~~----------~~~CP~CR 130 (135)
...+..|.+|-+...-..- +.|...||..||...+-. .-.|=+|.
T Consensus 90 DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~ 146 (386)
T 2pv0_B 90 DGYQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCL 146 (386)
T ss_dssp SSSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTS
T ss_pred CCCcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcC
Confidence 3445689999865432222 368999999999987632 23677774
No 116
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.09 E-value=2 Score=27.27 Aligned_cols=47 Identities=13% Similarity=0.277 Sum_probs=28.3
Q ss_pred CCCCCCcccccccCCcc-ccc--CCCCCccchhhHHHHhcc----CCCCccccc
Q 032728 85 DLDRNDECGICMENCTK-MVL--PNCGHSLCVNCFHDWNAR----SQSCLFAVA 131 (135)
Q Consensus 85 ~~~~~~~C~IC~~~~~~-~~l--~~CgH~FC~~Ci~~~~~~----~~~CP~CR~ 131 (135)
+..++..|.||...... ..+ -.|...||..|+.+=+.. .-.||.|+.
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 34456689999865322 112 347778889998642222 236888854
No 117
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=51.99 E-value=8.5 Score=24.44 Aligned_cols=47 Identities=15% Similarity=0.245 Sum_probs=26.8
Q ss_pred CCCCcccccccCCcc-ccc-CC--CC-CccchhhHHHHh--ccCCCCcccccccc
Q 032728 87 DRNDECGICMENCTK-MVL-PN--CG-HSLCVNCFHDWN--ARSQSCLFAVAAYR 134 (135)
Q Consensus 87 ~~~~~C~IC~~~~~~-~~l-~~--Cg-H~FC~~Ci~~~~--~~~~~CP~CR~~i~ 134 (135)
.+...| ||...... ++. -+ |. ..||..|+.--. .....||.|+..-+
T Consensus 34 ~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCCS
T ss_pred CCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcCC
Confidence 344567 99864322 222 12 55 579999986111 12358999976543
No 118
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=51.62 E-value=7.6 Score=23.36 Aligned_cols=33 Identities=30% Similarity=0.665 Sum_probs=24.0
Q ss_pred CCCCcccccccCCcccccCCC-CCccchhhHHHHh
Q 032728 87 DRNDECGICMENCTKMVLPNC-GHSLCVNCFHDWN 120 (135)
Q Consensus 87 ~~~~~C~IC~~~~~~~~l~~C-gH~FC~~Ci~~~~ 120 (135)
++..-|.||.+..+-.-+ .| |-.||..|..+.-
T Consensus 6 ee~pWC~ICneDAtlrC~-gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNEDATLRCA-GCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSCCCEEET-TTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCCCeEEec-CCCCceehHHHHHHHc
Confidence 344579999987654444 48 7799999988653
No 119
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=49.24 E-value=7.2 Score=22.66 Aligned_cols=46 Identities=22% Similarity=0.425 Sum_probs=29.5
Q ss_pred CCCCcccccccCCc---cccc--CCCCCccchhhHHHHh-------ccCCCCcccccc
Q 032728 87 DRNDECGICMENCT---KMVL--PNCGHSLCVNCFHDWN-------ARSQSCLFAVAA 132 (135)
Q Consensus 87 ~~~~~C~IC~~~~~---~~~l--~~CgH~FC~~Ci~~~~-------~~~~~CP~CR~~ 132 (135)
.++..|.||..... ..++ -.|.-.||..|+..-+ ...-.||.|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 45668999986521 2222 4577899999987522 123579988643
No 120
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=46.42 E-value=1 Score=28.40 Aligned_cols=44 Identities=11% Similarity=0.268 Sum_probs=28.1
Q ss_pred CCcccccccCCc---cccc--CCCCCccchhhHHHHhc--------cCCCCcccccc
Q 032728 89 NDECGICMENCT---KMVL--PNCGHSLCVNCFHDWNA--------RSQSCLFAVAA 132 (135)
Q Consensus 89 ~~~C~IC~~~~~---~~~l--~~CgH~FC~~Ci~~~~~--------~~~~CP~CR~~ 132 (135)
+..|.+|..... ..++ -.|...||..|+.+-+. ..-.||.|+..
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccch
Confidence 457999986532 2333 34777899999875332 23478888654
No 121
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=45.68 E-value=31 Score=22.18 Aligned_cols=29 Identities=21% Similarity=0.564 Sum_probs=18.6
Q ss_pred CCcccccccCC------c-ccc--cCCCCCccchhhHH
Q 032728 89 NDECGICMENC------T-KMV--LPNCGHSLCVNCFH 117 (135)
Q Consensus 89 ~~~C~IC~~~~------~-~~~--l~~CgH~FC~~Ci~ 117 (135)
...|.+|+... . ... -..|+..||..|+.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 44788887431 1 111 14689999999994
No 122
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=43.89 E-value=1.2 Score=29.06 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=25.8
Q ss_pred CcccccccCCcccccCCCCCccchhhHHHHhccCCCCcccccccc
Q 032728 90 DECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 90 ~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
..||+|....... =|+.+|..|-..+ .....||.|..+++
T Consensus 33 ~~CP~Cq~eL~~~----g~~~hC~~C~~~f-~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQD----NGHARCRSCGEFI-EMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEE----TTEEEETTTCCEE-EEEEECTTTCSBCE
T ss_pred ccCccCCCcceec----CCEEECccccchh-hccccCcchhhHHH
Confidence 5899998443221 2455588885542 33568999998875
No 123
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=43.79 E-value=1.7 Score=27.31 Aligned_cols=40 Identities=15% Similarity=0.405 Sum_probs=19.3
Q ss_pred CcccccccCCcccccCCCCCccchhhHHHHhccCCCCcccccccc
Q 032728 90 DECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 90 ~~C~IC~~~~~~~~l~~CgH~FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
..||.|....... =++..|..|-..+.... .||.|..++.
T Consensus 3 ~~CP~C~~~l~~~----~~~~~C~~C~~~~~~~a-fCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERN----GDTAHCETCAKDFSLQA-LCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEEC----SSEEECTTTCCEEEEEE-ECSSSCSCCC
T ss_pred CCCCCCCCccccC----CCceECccccccCCCcc-cCcchhhHHH
Confidence 3577776332211 12334555544333222 6777766653
No 124
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=43.57 E-value=20 Score=22.35 Aligned_cols=46 Identities=20% Similarity=0.504 Sum_probs=29.2
Q ss_pred CCCCCcccccccCC--c-cccc--CCCCCccchhhHHHHh--ccCCCCccccc
Q 032728 86 LDRNDECGICMENC--T-KMVL--PNCGHSLCVNCFHDWN--ARSQSCLFAVA 131 (135)
Q Consensus 86 ~~~~~~C~IC~~~~--~-~~~l--~~CgH~FC~~Ci~~~~--~~~~~CP~CR~ 131 (135)
.+++..|.||.+.. . ...+ -.|.-.||..|+..-. ...-.||.|..
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~ 74 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 74 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccC
Confidence 45667999999653 1 1222 3577789999987422 12347888854
No 125
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=41.85 E-value=16 Score=23.84 Aligned_cols=42 Identities=17% Similarity=0.438 Sum_probs=25.0
Q ss_pred CCCCCcccccccCCccccc-C--CCCCccchhhHHHHhcc----CCCCcccc
Q 032728 86 LDRNDECGICMENCTKMVL-P--NCGHSLCVNCFHDWNAR----SQSCLFAV 130 (135)
Q Consensus 86 ~~~~~~C~IC~~~~~~~~l-~--~CgH~FC~~Ci~~~~~~----~~~CP~CR 130 (135)
..++..|.+|.+.. +.+. - .|-..||..|+. +.. .-.||.|+
T Consensus 12 ~~~~~~C~~C~~~G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 12 QMHEDYCFQCGDGG-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp CSSCSSCTTTCCCS-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred CCCCCCCCcCCCCC-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 34566899998542 2222 1 376789999986 322 23577653
No 126
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=39.95 E-value=7.8 Score=22.39 Aligned_cols=46 Identities=17% Similarity=0.315 Sum_probs=28.1
Q ss_pred CCCCcccccccCCc---cccc-CCCCCccchhhHHHHhc-----cCCCCcccccc
Q 032728 87 DRNDECGICMENCT---KMVL-PNCGHSLCVNCFHDWNA-----RSQSCLFAVAA 132 (135)
Q Consensus 87 ~~~~~C~IC~~~~~---~~~l-~~CgH~FC~~Ci~~~~~-----~~~~CP~CR~~ 132 (135)
++...|++|..... .++. -.|..-||..|+.--.. ....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 34567999985432 1211 24777899999853211 24589999654
No 127
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=39.65 E-value=7.2 Score=26.90 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=16.2
Q ss_pred CCCCCccchhhHHHHhccCCCCccccccccC
Q 032728 105 PNCGHSLCVNCFHDWNARSQSCLFAVAAYRE 135 (135)
Q Consensus 105 ~~CgH~FC~~Ci~~~~~~~~~CP~CR~~i~~ 135 (135)
..|||.|=.. .....||.|.++++|
T Consensus 136 ~~Cg~~~~~~------~~~~~Cp~CG~~~~~ 160 (165)
T 2lcq_A 136 IGCGRKFSTL------PPGGVCPDCGSKVKL 160 (165)
T ss_dssp SSSCCEESSC------CGGGBCTTTCCBEEE
T ss_pred CCCCCcccCC------CCCCcCCCCCCccee
Confidence 5689888332 223479999887653
No 128
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=39.44 E-value=6.2 Score=31.09 Aligned_cols=45 Identities=18% Similarity=0.296 Sum_probs=0.0
Q ss_pred CCcccccccCCcc----cccCCCCCccchhhHHHHhc-------cCCCCccccccc
Q 032728 89 NDECGICMENCTK----MVLPNCGHSLCVNCFHDWNA-------RSQSCLFAVAAY 133 (135)
Q Consensus 89 ~~~C~IC~~~~~~----~~l~~CgH~FC~~Ci~~~~~-------~~~~CP~CR~~i 133 (135)
...|.+|...++- ---..||+.||..|...... ....|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 4579999865432 12246999999999875431 123577775544
No 129
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=38.11 E-value=25 Score=28.00 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=27.4
Q ss_pred CcccccccCCcc-cccCCCCCccchhh--HHHHhcc--CCCCccccccc
Q 032728 90 DECGICMENCTK-MVLPNCGHSLCVNC--FHDWNAR--SQSCLFAVAAY 133 (135)
Q Consensus 90 ~~C~IC~~~~~~-~~l~~CgH~FC~~C--i~~~~~~--~~~CP~CR~~i 133 (135)
..||+-...... ..-..|.|.-|.+- +.....+ .-.||+|...+
T Consensus 250 L~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 250 LQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp SBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred ecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCccc
Confidence 379987755444 44457999855543 3333322 46899998765
No 130
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=36.46 E-value=28 Score=27.56 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=27.4
Q ss_pred CcccccccCCcc-cccCCCCCccchh--hHHHHhcc--CCCCccccccc
Q 032728 90 DECGICMENCTK-MVLPNCGHSLCVN--CFHDWNAR--SQSCLFAVAAY 133 (135)
Q Consensus 90 ~~C~IC~~~~~~-~~l~~CgH~FC~~--Ci~~~~~~--~~~CP~CR~~i 133 (135)
..||+-...... ..-..|.|.-|.+ -+.....+ .-.||+|...+
T Consensus 216 L~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~ 264 (360)
T 4fo9_A 216 LMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKA 264 (360)
T ss_dssp SBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBC
T ss_pred eeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCccc
Confidence 379987755444 3445799985544 33333332 46899998765
No 131
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=35.61 E-value=4.4 Score=31.44 Aligned_cols=46 Identities=15% Similarity=0.358 Sum_probs=32.5
Q ss_pred CCCCcccccccCCcccccC----CCC--CccchhhHHHHhccCCCCcccccc
Q 032728 87 DRNDECGICMENCTKMVLP----NCG--HSLCVNCFHDWNARSQSCLFAVAA 132 (135)
Q Consensus 87 ~~~~~C~IC~~~~~~~~l~----~Cg--H~FC~~Ci~~~~~~~~~CP~CR~~ 132 (135)
.....||+|-....-.++. .=| |.+|..|-..|......||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 3456999998654332221 134 578999999999888999999653
No 132
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=35.42 E-value=20 Score=23.22 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=11.1
Q ss_pred CCCCCccchhhHHH
Q 032728 105 PNCGHSLCVNCFHD 118 (135)
Q Consensus 105 ~~CgH~FC~~Ci~~ 118 (135)
..|+..||..|+..
T Consensus 27 ~~C~~~~H~~Cl~~ 40 (114)
T 2kwj_A 27 ADCGRSGHPTCLQF 40 (114)
T ss_dssp SSSCCEECTTTTTC
T ss_pred CCCCCccchhhCCC
Confidence 36888999999863
No 133
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=35.16 E-value=10 Score=22.65 Aligned_cols=42 Identities=14% Similarity=0.298 Sum_probs=24.8
Q ss_pred cccccccCCcc-ccc--CCCCCccchhhHHHHhcc-----CCCCcccccc
Q 032728 91 ECGICMENCTK-MVL--PNCGHSLCVNCFHDWNAR-----SQSCLFAVAA 132 (135)
Q Consensus 91 ~C~IC~~~~~~-~~l--~~CgH~FC~~Ci~~~~~~-----~~~CP~CR~~ 132 (135)
.|.+|...... ..+ -.|...||..|+.+=+.. .-.||.|+..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 45566643222 222 247789999999843322 3379999753
No 134
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=34.20 E-value=7.4 Score=22.52 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=23.9
Q ss_pred CCCcccccccCCcc-ccc-CC--CC-CccchhhHHHHh--ccCCCCccccc
Q 032728 88 RNDECGICMENCTK-MVL-PN--CG-HSLCVNCFHDWN--ARSQSCLFAVA 131 (135)
Q Consensus 88 ~~~~C~IC~~~~~~-~~l-~~--Cg-H~FC~~Ci~~~~--~~~~~CP~CR~ 131 (135)
+...| ||...... ++. -+ |. ..||..|+.--. ...-.||.|+.
T Consensus 9 e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvgl~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCCCCcCCCCCEECcCccC
Confidence 34456 89854322 222 12 54 579999987110 12347999864
No 135
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=33.34 E-value=17 Score=23.02 Aligned_cols=42 Identities=17% Similarity=0.306 Sum_probs=25.0
Q ss_pred CCcccccccCCcc--ccc-CCCCCccchhhHHHHhcc---CCCCccccc
Q 032728 89 NDECGICMENCTK--MVL-PNCGHSLCVNCFHDWNAR---SQSCLFAVA 131 (135)
Q Consensus 89 ~~~C~IC~~~~~~--~~l-~~CgH~FC~~Ci~~~~~~---~~~CP~CR~ 131 (135)
...| ||...... ++. -.|.-.||..|+..-... ...||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3467 88744322 221 347778999998642221 348999964
No 136
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.83 E-value=11 Score=23.09 Aligned_cols=41 Identities=17% Similarity=0.374 Sum_probs=25.6
Q ss_pred cccccccCCcc-ccc--CCCCCccchhhHHHHhcc-----CCCCccccc
Q 032728 91 ECGICMENCTK-MVL--PNCGHSLCVNCFHDWNAR-----SQSCLFAVA 131 (135)
Q Consensus 91 ~C~IC~~~~~~-~~l--~~CgH~FC~~Ci~~~~~~-----~~~CP~CR~ 131 (135)
.|.||...... ..+ -.|...||..|+.+=+.. .-.||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 67788744222 222 357789999999853322 247999964
No 137
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=29.40 E-value=13 Score=22.73 Aligned_cols=41 Identities=15% Similarity=0.310 Sum_probs=24.5
Q ss_pred cccccccCCcc-ccc--CCCCCccchhhHHHHhcc----C-CCCccccc
Q 032728 91 ECGICMENCTK-MVL--PNCGHSLCVNCFHDWNAR----S-QSCLFAVA 131 (135)
Q Consensus 91 ~C~IC~~~~~~-~~l--~~CgH~FC~~Ci~~~~~~----~-~~CP~CR~ 131 (135)
.|.+|.....+ ..+ -.|...||..|+.+-+.. . -.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 45666644322 222 247778999999854432 2 47999975
No 138
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=29.27 E-value=43 Score=19.89 Aligned_cols=46 Identities=20% Similarity=0.511 Sum_probs=28.9
Q ss_pred CCCCCcccccccCC---ccccc--CCCCCccchhhHHHHh--ccCCCCccccc
Q 032728 86 LDRNDECGICMENC---TKMVL--PNCGHSLCVNCFHDWN--ARSQSCLFAVA 131 (135)
Q Consensus 86 ~~~~~~C~IC~~~~---~~~~l--~~CgH~FC~~Ci~~~~--~~~~~CP~CR~ 131 (135)
..++..|.||.+.. ....+ -.|.-.||..|+..-. +..-.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 34566899998553 12222 3577799999987422 12347888864
No 139
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=28.99 E-value=26 Score=30.46 Aligned_cols=20 Identities=15% Similarity=0.632 Sum_probs=15.4
Q ss_pred cchhhHHHHhc--------cCCCCcccc
Q 032728 111 LCVNCFHDWNA--------RSQSCLFAV 130 (135)
Q Consensus 111 FC~~Ci~~~~~--------~~~~CP~CR 130 (135)
+|..|..++.. +...||.|-
T Consensus 163 mC~~C~~EY~dp~~RRfhAqp~aC~~CG 190 (761)
T 3vth_A 163 MCEKCSREYHDPHDRRFHAQPVACFDCG 190 (761)
T ss_dssp CCHHHHHHHTCTTSTTTTCTTCCCTTTS
T ss_pred CCHHHHHHhcCcccccccCCCCcCCccC
Confidence 59999999864 235899994
No 140
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=28.54 E-value=40 Score=21.68 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=29.2
Q ss_pred cccccccCCc---ccccCCCCCccchhhHHHHhccCCCCcccccccc
Q 032728 91 ECGICMENCT---KMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 134 (135)
Q Consensus 91 ~C~IC~~~~~---~~~l~~CgH~FC~~Ci~~~~~~~~~CP~CR~~i~ 134 (135)
.|..|..... ..-...=|..||..|..+.+.....|..|..+|.
T Consensus 34 ~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 34 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp CCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred CcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcC
Confidence 5777765553 1222335778999998876654448999988774
No 141
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=28.35 E-value=20 Score=25.40 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=12.2
Q ss_pred CCCCccchhhHHHHhccCCCCcccccc
Q 032728 106 NCGHSLCVNCFHDWNARSQSCLFAVAA 132 (135)
Q Consensus 106 ~CgH~FC~~Ci~~~~~~~~~CP~CR~~ 132 (135)
.|||++=.. .....||+|..+
T Consensus 160 ~CG~~~~g~------~~p~~CP~C~~~ 180 (191)
T 1lko_A 160 NCGYVHEGT------GAPELCPACAHP 180 (191)
T ss_dssp TTCCEEEEE------ECCSBCTTTCCB
T ss_pred CCCCEeeCC------CCCCCCCCCcCC
Confidence 577765321 223478888764
No 142
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=28.32 E-value=22 Score=23.12 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=15.2
Q ss_pred CCCCCccchhhHHHHhccCC-CCccccccc
Q 032728 105 PNCGHSLCVNCFHDWNARSQ-SCLFAVAAY 133 (135)
Q Consensus 105 ~~CgH~FC~~Ci~~~~~~~~-~CP~CR~~i 133 (135)
.+|||.|=. ..... .||.|.++.
T Consensus 77 ~~CG~~~e~------~~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 77 KDCSHVFKP------NALDYGVCEKCHSKN 100 (119)
T ss_dssp SSSSCEECS------CCSTTCCCSSSSSCC
T ss_pred CCCCCEEeC------CCCCCCcCccccCCC
Confidence 468887754 23356 799997763
No 143
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=27.73 E-value=20 Score=26.58 Aligned_cols=41 Identities=15% Similarity=0.308 Sum_probs=23.3
Q ss_pred cccccccCCcc-ccc--CCCCCccchhhHHHHhcc-----CCCCccccc
Q 032728 91 ECGICMENCTK-MVL--PNCGHSLCVNCFHDWNAR-----SQSCLFAVA 131 (135)
Q Consensus 91 ~C~IC~~~~~~-~~l--~~CgH~FC~~Ci~~~~~~-----~~~CP~CR~ 131 (135)
.|.+|...... ..+ -.|...||..|+.+=+.. .-.||.|+.
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 58888753222 112 357789999999853332 236999975
No 144
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=27.43 E-value=27 Score=24.46 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=13.2
Q ss_pred CCCCCccchhhHHHHhccCCCCcccccc
Q 032728 105 PNCGHSLCVNCFHDWNARSQSCLFAVAA 132 (135)
Q Consensus 105 ~~CgH~FC~~Ci~~~~~~~~~CP~CR~~ 132 (135)
+.|||++=. .-...||+|..+
T Consensus 142 ~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 142 PICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp TTTCCEEES-------CCCSBCTTTCCB
T ss_pred CCCCCeeCC-------CCCCCCCCCCCC
Confidence 468887631 234589999754
No 145
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.15 E-value=59 Score=18.96 Aligned_cols=26 Identities=12% Similarity=0.235 Sum_probs=11.6
Q ss_pred CcccccccCCcccccCCCCCccchhh
Q 032728 90 DECGICMENCTKMVLPNCGHSLCVNC 115 (135)
Q Consensus 90 ~~C~IC~~~~~~~~l~~CgH~FC~~C 115 (135)
..|..|........+.--+..||..|
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~C 41 (79)
T 1x62_A 16 PMCDKCGTGIVGVFVKLRDRHRHPEC 41 (79)
T ss_dssp CCCSSSCCCCCSSCEECSSCEECTTT
T ss_pred CccccCCCCccCcEEEECcceeCcCc
Confidence 35666664432222222344555544
No 146
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=25.94 E-value=8.7 Score=22.17 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=24.4
Q ss_pred CCCCcccccccCCcc-ccc-CC--CC-CccchhhHHHHh--ccCCCCccccc
Q 032728 87 DRNDECGICMENCTK-MVL-PN--CG-HSLCVNCFHDWN--ARSQSCLFAVA 131 (135)
Q Consensus 87 ~~~~~C~IC~~~~~~-~~l-~~--Cg-H~FC~~Ci~~~~--~~~~~CP~CR~ 131 (135)
.+...| ||...... ++. -+ |. ..||..|+.--. ...-.||.|+.
T Consensus 7 ~e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 344466 89854322 222 23 65 589999987111 12347999864
No 147
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=25.90 E-value=19 Score=18.63 Aligned_cols=6 Identities=50% Similarity=1.171 Sum_probs=2.9
Q ss_pred cccccc
Q 032728 91 ECGICM 96 (135)
Q Consensus 91 ~C~IC~ 96 (135)
.||+|+
T Consensus 7 iCP~C~ 12 (34)
T 3mjh_B 7 ICPQCM 12 (34)
T ss_dssp ECTTTC
T ss_pred CCcHHH
Confidence 455554
No 148
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=25.63 E-value=37 Score=29.49 Aligned_cols=20 Identities=15% Similarity=0.537 Sum_probs=14.9
Q ss_pred cchhhHHHHhc--------cCCCCcccc
Q 032728 111 LCVNCFHDWNA--------RSQSCLFAV 130 (135)
Q Consensus 111 FC~~Ci~~~~~--------~~~~CP~CR 130 (135)
+|..|-.++.. +...||.|-
T Consensus 158 mC~~C~~EY~dp~dRRfhAqp~aC~~CG 185 (772)
T 4g9i_A 158 MCDFCRSEYEDPLNRRYHAEPTACPVCG 185 (772)
T ss_dssp CCHHHHHHHHCSSSTTTTCTTCCCTTTS
T ss_pred CChhHHHHhCCCCCCCCcCCCCCCccCC
Confidence 48899998864 235899994
No 149
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.53 E-value=61 Score=18.68 Aligned_cols=31 Identities=10% Similarity=0.092 Sum_probs=15.9
Q ss_pred cccccccCCc--ccccCCCCCccchhhHHHHhc
Q 032728 91 ECGICMENCT--KMVLPNCGHSLCVNCFHDWNA 121 (135)
Q Consensus 91 ~C~IC~~~~~--~~~l~~CgH~FC~~Ci~~~~~ 121 (135)
.|..|..... ......=|..||..|..+...
T Consensus 33 ~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 33 LCVRCGQMFAEGEEMYLQGSSIWHPACRQAART 65 (73)
T ss_dssp CCSSSCCCCCSSCCCEEETTEEECTTHHHHTSS
T ss_pred EeCCCCCCCCCCCeeEeeCCEEEChHHChHhhc
Confidence 5666654433 111122356777777766543
No 150
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=25.31 E-value=48 Score=19.43 Aligned_cols=46 Identities=22% Similarity=0.431 Sum_probs=22.7
Q ss_pred CCCCCcccccc-cCCccc---ccCCCCCccchhhHHHHhccC----CCCccccc
Q 032728 86 LDRNDECGICM-ENCTKM---VLPNCGHSLCVNCFHDWNARS----QSCLFAVA 131 (135)
Q Consensus 86 ~~~~~~C~IC~-~~~~~~---~l~~CgH~FC~~Ci~~~~~~~----~~CP~CR~ 131 (135)
..+...|.||+ ..+.+- .-..|.-.||..|=-.|--++ -.|-+||.
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred cCCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 34567999999 334332 111244455555544332221 14666654
No 151
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=25.24 E-value=9.2 Score=22.34 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=25.1
Q ss_pred CCCCcccccccCCcc-ccc-CC--CC-CccchhhHHHHh--ccCCCCcccccc
Q 032728 87 DRNDECGICMENCTK-MVL-PN--CG-HSLCVNCFHDWN--ARSQSCLFAVAA 132 (135)
Q Consensus 87 ~~~~~C~IC~~~~~~-~~l-~~--Cg-H~FC~~Ci~~~~--~~~~~CP~CR~~ 132 (135)
.+...| +|...... ++. -+ |. ..||..|+.--. ...-.||.|+..
T Consensus 9 ~e~~yC-~C~~~~~g~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 9 NEPTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp -CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHTC
T ss_pred CCCcEE-ECCCCCCCCeeeeeCCCCCcccEecccCCcCcCCCCCEECcCcccC
Confidence 344566 89864322 221 13 55 689999986211 123579999653
No 152
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.00 E-value=77 Score=17.83 Aligned_cols=12 Identities=33% Similarity=0.980 Sum_probs=7.3
Q ss_pred CCccchhhHHHH
Q 032728 108 GHSLCVNCFHDW 119 (135)
Q Consensus 108 gH~FC~~Ci~~~ 119 (135)
|..||..|..+.
T Consensus 53 ~~~yC~~cy~~~ 64 (72)
T 1wyh_A 53 GAHYCVPCYENK 64 (72)
T ss_dssp TEEEEHHHHHHH
T ss_pred CeEECHHHHHHH
Confidence 556677666543
No 153
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.78 E-value=99 Score=18.03 Aligned_cols=9 Identities=33% Similarity=1.062 Sum_probs=4.0
Q ss_pred CCccchhhH
Q 032728 108 GHSLCVNCF 116 (135)
Q Consensus 108 gH~FC~~Ci 116 (135)
|..||..|.
T Consensus 60 g~~yC~~cy 68 (79)
T 2cor_A 60 GELYCLPCH 68 (79)
T ss_dssp TEEECHHHH
T ss_pred CEEeCHHHH
Confidence 334444443
No 154
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=24.13 E-value=20 Score=17.75 Aligned_cols=8 Identities=13% Similarity=0.110 Sum_probs=4.7
Q ss_pred CCcccccc
Q 032728 125 SCLFAVAA 132 (135)
Q Consensus 125 ~CP~CR~~ 132 (135)
.||+|++.
T Consensus 5 ~CpvCk~q 12 (28)
T 2jvx_A 5 CCPKCQYQ 12 (28)
T ss_dssp ECTTSSCE
T ss_pred cCcccccc
Confidence 46666554
No 155
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=23.91 E-value=83 Score=18.74 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=11.9
Q ss_pred CcccccccCCcccccCCCCCccchhh
Q 032728 90 DECGICMENCTKMVLPNCGHSLCVNC 115 (135)
Q Consensus 90 ~~C~IC~~~~~~~~l~~CgH~FC~~C 115 (135)
..|..|........+.--+..||..|
T Consensus 26 ~~C~~C~~~I~~~~~~a~~~~~H~~C 51 (89)
T 1x64_A 26 PLCDKCGSGIVGAVVKARDKYRHPEC 51 (89)
T ss_dssp CBCTTTCCBCCSCCEESSSCEECTTT
T ss_pred CCcccCCCEecccEEEECCceECccC
Confidence 35666664433322222445555554
No 156
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=23.81 E-value=43 Score=21.70 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=17.5
Q ss_pred CCcccccccCCcccccCCCCCccch
Q 032728 89 NDECGICMENCTKMVLPNCGHSLCV 113 (135)
Q Consensus 89 ~~~C~IC~~~~~~~~l~~CgH~FC~ 113 (135)
...|..|.......+-..|||.+|.
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEEC
T ss_pred CCcCccccCCCCeeeeeecCccccC
Confidence 4579999855444444459999995
No 157
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.91 E-value=70 Score=18.59 Aligned_cols=15 Identities=13% Similarity=0.388 Sum_probs=9.2
Q ss_pred CCCccchhhHHHHhc
Q 032728 107 CGHSLCVNCFHDWNA 121 (135)
Q Consensus 107 CgH~FC~~Ci~~~~~ 121 (135)
=|..+|..|..+.+.
T Consensus 62 ~~~~~C~~c~~~~~~ 76 (81)
T 1x6a_A 62 HATLYCGKCHNEVVS 76 (81)
T ss_dssp SSCEEEHHHHHHHHC
T ss_pred CCEEECHHHHHHHhc
Confidence 356677777665443
No 158
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=20.83 E-value=40 Score=24.13 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=12.8
Q ss_pred CCCCCccchhhHHHHhccCCCCcccccc
Q 032728 105 PNCGHSLCVNCFHDWNARSQSCLFAVAA 132 (135)
Q Consensus 105 ~~CgH~FC~~Ci~~~~~~~~~CP~CR~~ 132 (135)
+.|||++=. .....||+|..+
T Consensus 175 ~~CG~i~~g-------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 175 PICGYIHKG-------EDFEKCPICFRP 195 (202)
T ss_dssp SSSCCEEES-------SCCSBCTTTCCB
T ss_pred CCCCCEEcC-------cCCCCCCCCCCC
Confidence 357877532 223589999764
No 159
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.76 E-value=26 Score=22.30 Aligned_cols=8 Identities=25% Similarity=0.962 Sum_probs=5.2
Q ss_pred CCcccccc
Q 032728 89 NDECGICM 96 (135)
Q Consensus 89 ~~~C~IC~ 96 (135)
...||+|-
T Consensus 47 g~~CPvCg 54 (112)
T 1l8d_A 47 KGKCPVCG 54 (112)
T ss_dssp SEECTTTC
T ss_pred CCCCCCCC
Confidence 34688774
Done!