BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032729
(135 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna
Binding Domain From Homo Sapiens, Northeast Structural
Genomics Consortium Target Hr3023c
Length = 125
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 40/68 (58%), Gaps = 11/68 (16%)
Query: 1 MLPKYFKHNNFSSFIRQLNTYGFKK---------TSPKQ--WEFRHDKFRRGCRHLLVEI 49
+LPKYFKHNN +SF+RQLN YGF+K P++ EF+H F RG LL I
Sbjct: 58 VLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENI 117
Query: 50 VRKKSDPS 57
RK + S
Sbjct: 118 KRKVTSVS 125
>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX
Length = 102
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 11/48 (22%)
Query: 1 MLPKYFKHNNFSSFIRQLNTYGFKKT-----------SPKQWEFRHDK 37
+LPKYFKH+NF+SF+RQLN YG+ K + +WEF +++
Sbjct: 53 VLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENER 100
>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila
Heat Shock Transcription Factor
pdb|1HKT|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila
Heat Shock Transcription Factor
Length = 106
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 10/62 (16%)
Query: 1 MLPKYFKHNNFSSFIRQLNTYGFKKTSP----------KQWEFRHDKFRRGCRHLLVEIV 50
+LP +KHNN +SFIRQLN YGF K + + EF H F+R LL +I
Sbjct: 45 LLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIK 104
Query: 51 RK 52
RK
Sbjct: 105 RK 106
>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna That Is Translationally Disordered
pdb|1FYL|A Chain A, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna In A Head-To-Head Orientation
pdb|1FYL|B Chain B, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna In A Head-To-Head Orientation
Length = 92
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 23/26 (88%)
Query: 1 MLPKYFKHNNFSSFIRQLNTYGFKKT 26
+LPKYFKH+NF+SF+RQLN YG+ K
Sbjct: 43 VLPKYFKHSNFASFVRQLNXYGWHKV 68
>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna In A Tail-To-Tail Orientation
pdb|1FYM|B Chain B, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna In A Tail-To-Tail Orientation
pdb|2HTS|A Chain A, Crystal Structure Of The Dna Binding Domain Of The Heat
Shock Transcription Factor
pdb|3HSF|A Chain A, Heat Shock Transcription Factor (Hsf)
Length = 92
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 11/48 (22%)
Query: 1 MLPKYFKHNNFSSFIRQLNTYGFKKT-----------SPKQWEFRHDK 37
+LPKYFKH+NF+SF+RQLN YG+ K + +WEF +++
Sbjct: 43 VLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENER 90
>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
pdb|1FBU|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Length = 90
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 11/48 (22%)
Query: 1 MLPKYFKHNNFSSFIRQLNTYGFKKT-----------SPKQWEFRHDK 37
+LPKYFKH+NF+SF+RQLN YG+ K + +WEF +++
Sbjct: 41 VLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENER 88
>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237a Mutation
pdb|1FBS|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237a Mutation
Length = 90
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 11/48 (22%)
Query: 1 MLPKYFKHNNFSSFIRQLNTYGFKKT-----------SPKQWEFRHDK 37
+L KYFKH+NF+SF+RQLN YG+ K + +WEF +++
Sbjct: 41 VLAKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENER 88
>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237k Mutation
pdb|1FBQ|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237k Mutation
Length = 90
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 11/48 (22%)
Query: 1 MLPKYFKHNNFSSFIRQLNTYGFKKT-----------SPKQWEFRHDK 37
+L KYFKH+NF+SF+RQLN YG+ K + +WEF +++
Sbjct: 41 VLKKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENER 88
>pdb|3FJN|A Chain A, The Crystal Structure Of 17-Alpha Hydroxysteroid
Dehydrogenase Y224d Mutant.
pdb|3FJN|B Chain B, The Crystal Structure Of 17-Alpha Hydroxysteroid
Dehydrogenase Y224d Mutant
Length = 323
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Query: 90 NESLKRERLQLQMQIAEFK--ALEIKLLDSLSQYM 122
N SLK ER++ MQ+ EF+ + ++K+LD L++ M
Sbjct: 269 NTSLKEERIKENMQVFEFQLSSEDMKVLDGLNRNM 303
>pdb|2HE5|A Chain A, Crystal Structure Of 17alpha-Hydroxysteroid Dehydrogenase
In Binary Complex With Nadp(H) In An Open Conformation
pdb|2HE5|B Chain B, Crystal Structure Of 17alpha-Hydroxysteroid Dehydrogenase
In Binary Complex With Nadp(H) In An Open Conformation
pdb|2HE5|C Chain C, Crystal Structure Of 17alpha-Hydroxysteroid Dehydrogenase
In Binary Complex With Nadp(H) In An Open Conformation
pdb|2HE5|D Chain D, Crystal Structure Of 17alpha-Hydroxysteroid Dehydrogenase
In Binary Complex With Nadp(H) In An Open Conformation
pdb|2HE8|A Chain A, Crystal Structure Of 17alpha-Hydroxysteroid Dehydrogenase
In Its Apo- Form
pdb|2HE8|B Chain B, Crystal Structure Of 17alpha-Hydroxysteroid Dehydrogenase
In Its Apo- Form
pdb|2HEJ|A Chain A, Crystal Structure Of 17alpha-Hydroxysteroid Dehydrogenase
In Complex With Nadp(H) In A Closed Conformation
pdb|2HEJ|B Chain B, Crystal Structure Of 17alpha-Hydroxysteroid Dehydrogenase
In Complex With Nadp(H) In A Closed Conformation
pdb|2P5N|A Chain A, Crystal Structure Of Mouse 17-Alpha Hydroxysteroid
Dehydrogenase In Complex With Coenzyme Nadph
pdb|2P5N|B Chain B, Crystal Structure Of Mouse 17-Alpha Hydroxysteroid
Dehydrogenase In Complex With Coenzyme Nadph
Length = 323
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Query: 90 NESLKRERLQLQMQIAEFK--ALEIKLLDSLSQYM 122
N SLK ER++ MQ+ EF+ + ++K+LD L++ M
Sbjct: 269 NTSLKEERIKENMQVFEFQLSSEDMKVLDGLNRNM 303
>pdb|2IPG|A Chain A, Crystal Structure Of 17alpha-Hydroxysteroid Dehydrogenase
Mutant K31a In Complex With Nadp+ And Epi-Testosterone
pdb|2IPG|B Chain B, Crystal Structure Of 17alpha-Hydroxysteroid Dehydrogenase
Mutant K31a In Complex With Nadp+ And Epi-Testosterone
Length = 319
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Query: 90 NESLKRERLQLQMQIAEFK--ALEIKLLDSLSQYM 122
N SLK ER++ MQ+ EF+ + ++K+LD L++ M
Sbjct: 265 NTSLKEERIKENMQVFEFQLSSEDMKVLDGLNRNM 299
>pdb|3CV6|A Chain A, The Crystal Structure Of Mouse 17-Alpha Hydroxysteroid
Dehydrogenase Gg225.226pp Mutant In Complex With
Inhibitor And Cofactor Nadp+.
pdb|3CV6|B Chain B, The Crystal Structure Of Mouse 17-Alpha Hydroxysteroid
Dehydrogenase Gg225.226pp Mutant In Complex With
Inhibitor And Cofactor Nadp+
Length = 323
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Query: 90 NESLKRERLQLQMQIAEFK--ALEIKLLDSLSQYM 122
N SLK ER++ MQ+ EF+ + ++K+LD L++ M
Sbjct: 269 NTSLKEERIKENMQVFEFQLSSEDMKVLDGLNRNM 303
>pdb|2IPF|A Chain A, Crystal Structure Of 17alpha-Hydroxysteroid Dehydrogenase
In Complex With Nadp+ And Epi-Testosterone
pdb|2IPF|B Chain B, Crystal Structure Of 17alpha-Hydroxysteroid Dehydrogenase
In Complex With Nadp+ And Epi-Testosterone
Length = 318
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Query: 90 NESLKRERLQLQMQIAEFK--ALEIKLLDSLSQYM 122
N SLK ER++ MQ+ EF+ + ++K+LD L++ M
Sbjct: 264 NTSLKEERIKENMQVFEFQLSSEDMKVLDGLNRNM 298
>pdb|2CAU|A Chain A, Canavalin From Jack Bean
pdb|2CAV|A Chain A, Canavalin From Jack Bean
Length = 445
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 56 PSVFPAYLKAASNEGSIASAAGKEHNNHLLLMEENESLKRERLQLQMQIAEF 107
PS FP LKAAS+ + E+N L E++ R Q+ Q+++
Sbjct: 349 PSSFPVALKAASDLNMVGIGVNAENNERNFLAGHKENVIR---QIPRQVSDL 397
>pdb|4E17|B Chain B, Alpha-E-Catenin Is An Autoinhibited Molecule That
Co-Activates Vinculin
Length = 40
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 5/31 (16%)
Query: 94 KRERLQLQMQIAEFKALEIKLLDSLSQYMGN 124
+RER+ +AE A+ L D LS+YMGN
Sbjct: 13 RRERI-----VAECNAVRQALQDLLSEYMGN 38
>pdb|1CAU|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAV|B Chain B, The Three-Dimensional Structure Of Canavalin From Jack
Bean (Canavalia Ensiformis)
pdb|1CAW|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|D Chain D, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|F Chain F, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
Length = 184
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 56 PSVFPAYLKAASNEGSIASAAGKEHNNHLLLMEENESLKRERLQLQMQIAEF 107
PS FP LKAAS+ + E+N L E++ R Q+ Q+++
Sbjct: 109 PSSFPVALKAASDLNMVGIGVNAENNERNFLAGHKENVIR---QIPRQVSDL 157
>pdb|1M1B|A Chain A, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Sulfopyruvate
pdb|1M1B|B Chain B, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Sulfopyruvate
pdb|1S2T|A Chain A, Crystal Structure Of Apo Phosphoenolpyruvate Mutase
pdb|1S2T|B Chain B, Crystal Structure Of Apo Phosphoenolpyruvate Mutase
pdb|1S2V|A Chain A, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Mg(ii)
pdb|1S2V|B Chain B, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Mg(ii)
pdb|1S2V|C Chain C, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Mg(ii)
pdb|1S2V|D Chain D, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Mg(ii)
pdb|1S2W|A Chain A, Crystal Structure Of Phosphoenolpyruvate Mutase In High
Ionic Strength
Length = 295
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 52 KKSDPSVFPAYLKAASNEGSI 72
KK+DPS A++KA +N+G +
Sbjct: 192 KKADPSDIEAFMKAWNNQGPV 212
>pdb|1S2U|A Chain A, Crystal Structure Of The D58a Phosphoenolpyruvate Mutase
Mutant Protein
pdb|1S2U|B Chain B, Crystal Structure Of The D58a Phosphoenolpyruvate Mutase
Mutant Protein
Length = 295
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 52 KKSDPSVFPAYLKAASNEGSI 72
KK+DPS A++KA +N+G +
Sbjct: 192 KKADPSDIEAFMKAWNNQGPV 212
>pdb|1WLE|A Chain A, Crystal Structure Of Mammalian Mitochondrial Seryl-Trna
Synthetase Complexed With Seryl-Adenylate
pdb|1WLE|B Chain B, Crystal Structure Of Mammalian Mitochondrial Seryl-Trna
Synthetase Complexed With Seryl-Adenylate
Length = 501
Score = 26.2 bits (56), Expect = 6.5, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 87 MEENESLKRERLQLQMQIAEFKALEIKLLDSLSQYMG 123
+E++ L E L LQM+I L ++LD +Q +G
Sbjct: 344 LEQSSELLEEFLSLQMEILTELGLHFRVLDMPTQELG 380
>pdb|4E18|B Chain B, Alpha-E-Catenin Is An Autoinhibited Molecule That
Co-Activates Vinculin
Length = 59
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 5/31 (16%)
Query: 94 KRERLQLQMQIAEFKALEIKLLDSLSQYMGN 124
+RER+ +AE A+ L D LS+YMGN
Sbjct: 32 RRERI-----VAECNAVRQALQDLLSEYMGN 57
>pdb|1DGR|Y Chain Y, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGR|W Chain W, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGR|M Chain M, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGW|Y Chain Y, Structure Of The Rhombohedral Crystal Of Canavalin From
Jack Bean
Length = 93
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 56 PSVFPAYLKAASNEGSIASAAGKEHNNHLLLMEENESLKRERLQLQMQIAEF 107
PS FP LKAAS+ + E+N L E++ R Q+ Q+++
Sbjct: 19 PSSFPVALKAASDLNMVGIGVNAENNERNFLAGHKENVIR---QIPRQVSDL 67
>pdb|4EHP|B Chain B, Crystal Structure Of Human Vinculin Head Domain (Residues
1-252) In Complex With Alpha-Catenin (Residues 277-382)
Length = 111
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 94 KRERLQLQMQIAEFKALEIKLLDSLSQYMGNFNHQNK 130
+RER+ +AE A+ L D LS+YMGN + +
Sbjct: 58 RRERI-----VAECNAVRQALQDLLSEYMGNAGRKER 89
>pdb|1JI6|A Chain A, Crystal Structure Of The Insecticidal Bacterial Del
Endotoxin Cry3bb1 Bacillus Thuringiensis
Length = 589
Score = 25.8 bits (55), Expect = 7.7, Method: Composition-based stats.
Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 24/126 (19%)
Query: 8 HNNFSSFIRQLNTYGFKKT-----SPKQWEFRHDKFRRGCRHL---LVEIVRKKSDPSVF 59
NNF ++ LN++ KKT S + + + F + H + K +
Sbjct: 75 QNNFEDYVNALNSW--KKTPLSLRSKRSQDRIRELFSQAESHFRNSMPSFAVSKFEVLFL 132
Query: 60 PAYLKAASNEGSIASAAGKEHNNHLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLS 119
P Y +AA N HLLL+++ + E +AEF ++KL +
Sbjct: 133 PTYAQAA--------------NTHLLLLKDAQVFGEEWGYSSEDVAEFYHRQLKLTQQYT 178
Query: 120 QYMGNF 125
+ N+
Sbjct: 179 DHCVNW 184
>pdb|4IGG|A Chain A, Full-Length Human Alpha-Catenin Crystal Structure
pdb|4IGG|B Chain B, Full-Length Human Alpha-Catenin Crystal Structure
Length = 832
Score = 25.8 bits (55), Expect = 8.7, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 94 KRERLQLQMQIAEFKALEIKLLDSLSQYMGNFNHQNK 130
+RER+ +AE A+ L D LS+YMGN + +
Sbjct: 248 RRERI-----VAECNAVRQALQDLLSEYMGNAGRKER 279
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,673,259
Number of Sequences: 62578
Number of extensions: 122116
Number of successful extensions: 275
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 258
Number of HSP's gapped (non-prelim): 28
length of query: 135
length of database: 14,973,337
effective HSP length: 88
effective length of query: 47
effective length of database: 9,466,473
effective search space: 444924231
effective search space used: 444924231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)