Query 032729
Match_columns 135
No_of_seqs 162 out of 863
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 05:12:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032729.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032729hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0627 Heat shock transcripti 99.9 1.1E-25 2.4E-30 183.4 5.0 58 1-58 53-112 (304)
2 PF00447 HSF_DNA-bind: HSF-typ 99.8 1.1E-22 2.3E-27 142.8 0.8 54 1-54 40-102 (103)
3 smart00415 HSF heat shock fact 99.8 2.4E-22 5.2E-27 141.9 2.2 52 1-52 43-105 (105)
4 COG5169 HSF1 Heat shock transc 99.8 5.2E-22 1.1E-26 161.5 3.0 117 1-117 51-182 (282)
5 PF02183 HALZ: Homeobox associ 88.7 1.4 3E-05 26.6 4.5 28 82-109 13-40 (45)
6 PF04340 DUF484: Protein of un 88.1 1.4 3E-05 34.5 5.4 21 31-51 14-34 (225)
7 PF07407 Seadorna_VP6: Seadorn 88.1 1.9 4.2E-05 36.7 6.5 29 81-109 32-60 (420)
8 PF05377 FlaC_arch: Flagella a 88.0 2.8 6E-05 26.5 5.7 37 81-117 7-43 (55)
9 KOG4196 bZIP transcription fac 87.0 2.1 4.6E-05 31.6 5.5 40 80-119 80-119 (135)
10 PF06156 DUF972: Protein of un 81.3 2.9 6.3E-05 29.7 4.1 28 82-109 30-57 (107)
11 PF06005 DUF904: Protein of un 81.2 13 0.00028 24.5 7.0 37 86-122 30-66 (72)
12 PRK10963 hypothetical protein; 81.0 6.9 0.00015 30.8 6.5 18 34-51 14-31 (223)
13 smart00338 BRLZ basic region l 80.9 4.3 9.2E-05 25.6 4.4 28 82-109 34-61 (65)
14 PRK13169 DNA replication intia 78.9 3.8 8.3E-05 29.3 4.0 28 81-108 29-56 (110)
15 PF02183 HALZ: Homeobox associ 78.7 12 0.00026 22.5 5.7 37 80-116 4-40 (45)
16 PF12709 Kinetocho_Slk19: Cent 78.4 9.1 0.0002 26.4 5.6 37 82-118 50-86 (87)
17 PF10224 DUF2205: Predicted co 78.2 14 0.00031 25.0 6.4 42 83-124 18-62 (80)
18 PF06005 DUF904: Protein of un 78.1 12 0.00026 24.6 6.0 29 86-114 37-65 (72)
19 smart00340 HALZ homeobox assoc 77.4 3.9 8.4E-05 24.6 3.1 18 84-101 15-32 (44)
20 PRK13922 rod shape-determining 75.9 9.3 0.0002 30.6 6.0 29 82-110 70-98 (276)
21 PF07334 IFP_35_N: Interferon- 75.2 7.2 0.00016 26.2 4.3 27 83-109 2-28 (76)
22 smart00338 BRLZ basic region l 75.1 17 0.00036 22.8 5.9 35 83-117 28-62 (65)
23 KOG4343 bZIP transcription fac 74.8 3.6 7.8E-05 37.1 3.5 28 81-108 309-336 (655)
24 PF00170 bZIP_1: bZIP transcri 74.2 11 0.00024 23.6 4.9 32 83-114 28-59 (64)
25 PF00170 bZIP_1: bZIP transcri 74.1 18 0.00038 22.7 5.8 31 80-110 32-62 (64)
26 TIGR00219 mreC rod shape-deter 73.9 11 0.00024 30.8 6.0 24 83-106 68-91 (283)
27 PF07716 bZIP_2: Basic region 73.8 11 0.00023 23.0 4.6 27 83-109 27-53 (54)
28 PF11544 Spc42p: Spindle pole 73.2 17 0.00036 24.5 5.6 33 86-118 3-35 (76)
29 COG3159 Uncharacterized protei 71.2 18 0.00039 28.9 6.4 81 31-128 12-92 (218)
30 PF02344 Myc-LZ: Myc leucine z 70.6 14 0.00031 20.8 4.1 26 84-109 4-29 (32)
31 PRK14872 rod shape-determining 68.2 13 0.00027 31.6 5.2 30 81-110 57-86 (337)
32 PHA03155 hypothetical protein; 66.4 12 0.00025 27.1 4.0 27 80-106 7-33 (115)
33 TIGR02894 DNA_bind_RsfA transc 66.1 30 0.00065 26.4 6.4 34 86-119 116-149 (161)
34 KOG3119 Basic region leucine z 65.2 15 0.00032 29.9 5.0 39 86-124 220-258 (269)
35 PF14645 Chibby: Chibby family 64.8 22 0.00047 25.5 5.2 39 85-123 68-106 (116)
36 KOG3119 Basic region leucine z 63.7 24 0.00053 28.7 6.0 31 83-113 224-254 (269)
37 PF08172 CASP_C: CASP C termin 63.7 24 0.00052 28.5 5.9 40 83-122 95-137 (248)
38 TIGR03752 conj_TIGR03752 integ 63.5 28 0.0006 30.9 6.6 20 83-102 75-94 (472)
39 TIGR02449 conserved hypothetic 63.4 36 0.00079 22.1 5.6 26 83-108 9-34 (65)
40 PF07989 Microtub_assoc: Micro 62.0 32 0.00069 22.8 5.3 31 83-113 38-68 (75)
41 PRK00888 ftsB cell division pr 61.6 17 0.00037 25.4 4.2 28 82-109 35-62 (105)
42 PF05812 Herpes_BLRF2: Herpesv 61.0 17 0.00037 26.4 4.1 27 81-107 3-29 (118)
43 PHA00728 hypothetical protein 61.0 14 0.00031 27.2 3.7 24 87-110 4-27 (151)
44 PF12325 TMF_TATA_bd: TATA ele 60.5 58 0.0013 23.5 6.9 37 83-119 18-54 (120)
45 PF14077 WD40_alt: Alternative 59.9 12 0.00027 22.8 2.7 32 91-122 14-45 (48)
46 smart00340 HALZ homeobox assoc 57.2 33 0.00072 20.6 4.2 31 80-110 4-34 (44)
47 PF15058 Speriolin_N: Sperioli 56.7 25 0.00054 27.7 4.6 29 81-109 5-33 (200)
48 PRK14127 cell division protein 55.9 29 0.00062 24.8 4.5 28 82-109 38-65 (109)
49 PF14775 NYD-SP28_assoc: Sperm 55.8 27 0.00058 22.2 3.9 21 84-104 36-56 (60)
50 TIGR02894 DNA_bind_RsfA transc 55.5 54 0.0012 25.0 6.2 31 84-114 100-130 (161)
51 PHA03162 hypothetical protein; 54.0 22 0.00048 26.3 3.8 26 81-106 13-38 (135)
52 KOG4571 Activating transcripti 52.8 37 0.0008 28.3 5.3 27 84-110 258-284 (294)
53 COG3074 Uncharacterized protei 50.8 73 0.0016 21.3 6.8 24 83-106 20-43 (79)
54 cd07429 Cby_like Chibby, a nuc 50.4 56 0.0012 23.3 5.3 34 87-120 71-104 (108)
55 PF06156 DUF972: Protein of un 49.7 56 0.0012 23.1 5.2 32 83-114 24-55 (107)
56 COG4467 Regulator of replicati 48.8 24 0.00053 25.3 3.2 25 82-106 30-54 (114)
57 PF10883 DUF2681: Protein of u 48.0 61 0.0013 22.2 5.0 25 84-108 26-50 (87)
58 PRK09413 IS2 repressor TnpA; R 47.9 54 0.0012 23.0 5.0 28 83-110 73-100 (121)
59 PRK10803 tol-pal system protei 47.3 62 0.0013 26.1 5.8 34 83-116 63-96 (263)
60 KOG4196 bZIP transcription fac 46.2 96 0.0021 23.0 6.1 25 85-109 78-102 (135)
61 PRK01203 prefoldin subunit alp 45.9 1E+02 0.0023 22.6 6.3 39 85-123 4-42 (130)
62 PF13851 GAS: Growth-arrest sp 45.2 1.3E+02 0.0029 23.2 7.2 41 83-123 95-135 (201)
63 PF10224 DUF2205: Predicted co 45.1 94 0.002 20.9 6.5 38 86-123 28-65 (80)
64 PRK00888 ftsB cell division pr 44.3 79 0.0017 22.1 5.3 32 83-114 29-60 (105)
65 PF05377 FlaC_arch: Flagella a 44.0 81 0.0018 19.9 6.4 26 81-106 14-39 (55)
66 PRK10803 tol-pal system protei 43.6 59 0.0013 26.2 5.1 34 83-116 56-89 (263)
67 PF11932 DUF3450: Protein of u 42.8 1.2E+02 0.0027 23.9 6.8 30 92-121 81-110 (251)
68 PRK10884 SH3 domain-containing 42.8 69 0.0015 25.1 5.2 28 21-48 65-94 (206)
69 TIGR02209 ftsL_broad cell divi 42.6 58 0.0012 21.1 4.2 27 83-109 33-59 (85)
70 PF04977 DivIC: Septum formati 41.9 88 0.0019 19.6 6.6 25 83-107 26-50 (80)
71 PF07407 Seadorna_VP6: Seadorn 41.4 42 0.00092 28.8 4.0 28 79-106 37-64 (420)
72 PF13591 MerR_2: MerR HTH fami 41.2 37 0.00081 22.5 3.1 70 12-101 14-83 (84)
73 KOG4460 Nuclear pore complex, 41.2 96 0.0021 28.5 6.4 45 83-127 604-648 (741)
74 PF11853 DUF3373: Protein of u 41.0 25 0.00055 31.3 2.8 28 86-113 29-56 (489)
75 TIGR02132 phaR_Bmeg polyhydrox 41.0 48 0.001 25.9 4.0 31 89-119 108-138 (189)
76 PF00631 G-gamma: GGL domain; 40.9 69 0.0015 20.3 4.2 41 84-127 5-45 (68)
77 PF08776 VASP_tetra: VASP tetr 40.9 77 0.0017 18.7 5.7 20 89-108 4-24 (40)
78 PF15456 Uds1: Up-regulated Du 40.7 1.2E+02 0.0027 21.9 6.0 24 87-110 21-44 (124)
79 PF07558 Shugoshin_N: Shugoshi 40.7 42 0.00091 20.1 2.9 24 81-104 21-44 (46)
80 PF04880 NUDE_C: NUDE protein, 38.6 13 0.00028 28.5 0.6 26 83-109 26-51 (166)
81 PRK13169 DNA replication intia 38.6 1.1E+02 0.0024 21.8 5.3 31 83-113 24-54 (110)
82 KOG4005 Transcription factor X 38.6 92 0.002 25.6 5.4 35 83-117 99-133 (292)
83 PRK14127 cell division protein 38.2 1.1E+02 0.0025 21.7 5.3 36 83-118 32-67 (109)
84 PF05064 Nsp1_C: Nsp1-like C-t 36.9 72 0.0016 22.5 4.2 42 83-124 59-100 (116)
85 PRK10265 chaperone-modulator p 36.7 60 0.0013 22.3 3.7 24 83-106 73-96 (101)
86 PF08653 DASH_Dam1: DASH compl 36.3 1.1E+02 0.0025 19.3 4.8 32 86-117 3-34 (58)
87 PF06216 RTBV_P46: Rice tungro 36.3 95 0.0021 25.9 5.2 36 82-117 79-114 (389)
88 KOG3863 bZIP transcription fac 35.5 66 0.0014 29.5 4.5 74 37-120 480-557 (604)
89 PF06305 DUF1049: Protein of u 35.3 50 0.0011 20.4 2.9 21 86-106 46-66 (68)
90 PF02671 PAH: Paired amphipath 35.2 2.7 5.8E-05 24.9 -3.0 42 10-51 3-44 (47)
91 PF15294 Leu_zip: Leucine zipp 35.1 1.2E+02 0.0025 25.2 5.6 30 83-112 127-156 (278)
92 PF04508 Pox_A_type_inc: Viral 35.0 58 0.0013 17.0 2.5 19 89-107 2-20 (23)
93 PF14197 Cep57_CLD_2: Centroso 34.9 94 0.002 20.2 4.1 25 83-107 42-66 (69)
94 PF11382 DUF3186: Protein of u 34.9 1.3E+02 0.0028 24.9 5.9 29 84-112 35-63 (308)
95 PF08961 DUF1875: Domain of un 33.6 14 0.0003 29.8 0.0 26 83-108 138-163 (243)
96 PF07200 Mod_r: Modifier of ru 33.3 1.8E+02 0.004 20.8 6.2 26 83-108 36-61 (150)
97 PRK10884 SH3 domain-containing 33.1 1.9E+02 0.0041 22.6 6.4 21 86-106 137-157 (206)
98 PRK15422 septal ring assembly 33.0 1.6E+02 0.0034 20.0 6.7 19 84-102 21-39 (79)
99 PF01166 TSC22: TSC-22/dip/bun 32.8 80 0.0017 20.2 3.4 13 86-98 26-38 (59)
100 PHA01750 hypothetical protein 32.7 93 0.002 20.5 3.8 12 95-106 42-53 (75)
101 PF04999 FtsL: Cell division p 32.3 98 0.0021 20.7 4.1 27 83-109 44-70 (97)
102 PF04111 APG6: Autophagy prote 32.0 2.2E+02 0.0047 23.6 6.9 25 84-108 60-84 (314)
103 TIGR00219 mreC rod shape-deter 31.9 1.4E+02 0.0031 24.3 5.7 25 88-112 66-90 (283)
104 PF09457 RBD-FIP: FIP domain ; 31.4 1.3E+02 0.0027 18.4 5.7 33 84-116 3-35 (48)
105 PF13331 DUF4093: Domain of un 30.6 25 0.00055 23.9 0.9 19 7-25 61-79 (87)
106 PRK13923 putative spore coat p 30.5 2.4E+02 0.0052 21.7 6.3 37 83-119 113-149 (170)
107 PF12017 Tnp_P_element: Transp 30.2 2.5E+02 0.0055 22.5 6.7 27 84-110 14-40 (236)
108 PF12808 Mto2_bdg: Micro-tubul 30.1 1.2E+02 0.0026 18.9 3.8 23 86-108 27-49 (52)
109 PF04325 DUF465: Protein of un 29.9 1.1E+02 0.0024 18.1 3.6 22 88-109 27-48 (49)
110 COG1792 MreC Cell shape-determ 29.8 1.8E+02 0.0039 23.8 5.9 28 83-110 68-95 (284)
111 PF10805 DUF2730: Protein of u 29.8 1.9E+02 0.0042 20.0 5.5 35 82-116 66-100 (106)
112 PF07200 Mod_r: Modifier of ru 29.7 2.1E+02 0.0046 20.5 6.6 42 87-128 54-95 (150)
113 PF05529 Bap31: B-cell recepto 29.3 1.4E+02 0.0029 22.6 4.9 29 84-112 157-185 (192)
114 PF15058 Speriolin_N: Sperioli 29.1 80 0.0017 24.9 3.5 23 82-104 13-35 (200)
115 PF14645 Chibby: Chibby family 28.5 1.3E+02 0.0029 21.4 4.4 26 82-107 72-97 (116)
116 PF07927 YcfA: YcfA-like prote 27.5 56 0.0012 19.4 2.0 29 11-39 1-31 (56)
117 PF15369 KIAA1328: Uncharacter 27.2 2.4E+02 0.0052 24.0 6.2 44 83-132 42-85 (328)
118 KOG3650 Predicted coiled-coil 26.9 1.5E+02 0.0033 21.1 4.3 9 116-124 98-106 (120)
119 PF11382 DUF3186: Protein of u 26.4 2.2E+02 0.0048 23.5 5.9 39 80-118 38-76 (308)
120 KOG3316 Transport protein part 26.4 1.4E+02 0.003 22.9 4.3 41 88-128 51-94 (163)
121 COG2919 Septum formation initi 26.2 1.2E+02 0.0026 21.4 3.8 28 83-110 59-86 (117)
122 PF07412 Geminin: Geminin; In 26.1 1.5E+02 0.0033 23.4 4.6 29 84-112 121-149 (200)
123 PF14988 DUF4515: Domain of un 25.8 2E+02 0.0043 22.5 5.3 33 83-115 158-190 (206)
124 PF12711 Kinesin-relat_1: Kine 25.6 1.1E+02 0.0024 21.0 3.3 16 95-110 51-66 (86)
125 PF02403 Seryl_tRNA_N: Seryl-t 25.5 2.2E+02 0.0047 19.2 5.2 31 83-113 69-99 (108)
126 PF12325 TMF_TATA_bd: TATA ele 25.3 2.6E+02 0.0057 20.1 5.8 17 100-116 73-89 (120)
127 KOG0930 Guanine nucleotide exc 25.1 1.1E+02 0.0023 26.0 3.8 27 83-109 26-52 (395)
128 PF10458 Val_tRNA-synt_C: Valy 25.0 1.8E+02 0.004 18.2 4.3 23 86-108 2-24 (66)
129 TIGR02449 conserved hypothetic 24.8 2E+02 0.0044 18.6 5.9 38 83-120 16-60 (65)
130 PF04102 SlyX: SlyX; InterPro 24.8 2E+02 0.0042 18.4 5.2 40 82-121 12-51 (69)
131 COG2841 Uncharacterized protei 24.4 1.2E+02 0.0026 20.1 3.2 21 88-108 46-66 (72)
132 PF04799 Fzo_mitofusin: fzo-li 24.4 3.3E+02 0.0072 20.9 6.7 30 83-112 122-151 (171)
133 COG2433 Uncharacterized conser 24.2 2.7E+02 0.0058 25.8 6.4 37 84-120 425-461 (652)
134 TIGR03752 conj_TIGR03752 integ 24.2 3.2E+02 0.007 24.4 6.8 26 84-109 69-94 (472)
135 PF13118 DUF3972: Protein of u 23.9 3E+02 0.0064 20.2 6.3 36 86-121 83-121 (126)
136 PF14420 Clr5: Clr5 domain 23.7 39 0.00085 20.6 0.8 15 11-25 40-54 (54)
137 PF04111 APG6: Autophagy prote 22.8 3.3E+02 0.0071 22.6 6.3 22 86-107 69-90 (314)
138 PF07106 TBPIP: Tat binding pr 22.7 1.8E+02 0.0039 21.4 4.4 26 83-108 81-106 (169)
139 PF14916 CCDC92: Coiled-coil d 22.7 64 0.0014 20.7 1.6 21 82-102 22-42 (60)
140 PF15619 Lebercilin: Ciliary p 22.2 3.7E+02 0.0081 20.8 7.0 24 83-106 21-44 (194)
141 PF09006 Surfac_D-trimer: Lung 22.1 2E+02 0.0043 17.5 5.0 16 93-108 4-19 (46)
142 PF03980 Nnf1: Nnf1 ; InterPr 21.9 1.8E+02 0.0039 19.9 4.0 26 83-108 82-107 (109)
143 PF00804 Syntaxin: Syntaxin; 21.7 2.3E+02 0.005 18.1 5.6 27 92-118 42-68 (103)
144 PF13974 YebO: YebO-like prote 21.6 2.1E+02 0.0045 19.4 4.0 25 95-119 26-50 (80)
145 PRK00846 hypothetical protein; 21.6 2.6E+02 0.0056 18.7 5.2 29 88-116 27-55 (77)
146 PF10473 CENP-F_leu_zip: Leuci 21.4 3.5E+02 0.0075 20.0 6.2 30 83-112 68-97 (140)
147 PRK10722 hypothetical protein; 21.1 3.2E+02 0.0069 22.3 5.7 35 87-121 175-209 (247)
148 PHA02109 hypothetical protein 21.1 4E+02 0.0086 21.0 6.0 38 87-124 192-229 (233)
149 PRK13922 rod shape-determining 20.9 3.8E+02 0.0082 21.2 6.2 27 88-114 69-95 (276)
150 PF04420 CHD5: CHD5-like prote 20.5 3.7E+02 0.0079 20.0 7.2 35 84-118 69-103 (161)
151 PRK13729 conjugal transfer pil 20.3 3.1E+02 0.0067 24.5 5.9 26 83-108 78-103 (475)
152 PHA03385 IX capsid protein IX, 20.3 2.1E+02 0.0046 21.1 4.1 30 80-109 99-128 (135)
153 PF14584 DUF4446: Protein of u 20.2 2.7E+02 0.0059 20.7 4.9 34 79-112 44-77 (151)
154 KOG4571 Activating transcripti 20.2 3.5E+02 0.0075 22.7 5.8 34 83-116 250-283 (294)
155 PF01486 K-box: K-box region; 20.1 2E+02 0.0044 19.3 3.9 27 81-107 12-38 (100)
156 PF11577 NEMO: NF-kappa-B esse 20.0 2.6E+02 0.0057 18.2 5.5 35 83-120 8-42 (68)
No 1
>KOG0627 consensus Heat shock transcription factor [Transcription]
Probab=99.92 E-value=1.1e-25 Score=183.43 Aligned_cols=58 Identities=55% Similarity=0.991 Sum_probs=55.7
Q ss_pred CCCCCCCcCChhhHHhhhcccCceeec--CCcceeecCCcCCCChhchHHHhhhcCCCCC
Q 032729 1 MLPKYFKHNNFSSFIRQLNTYGFKKTS--PKQWEFRHDKFRRGCRHLLVEIVRKKSDPSV 58 (135)
Q Consensus 1 vLp~~Fk~~~f~SFvRqLn~yGF~k~~--~~~~ef~h~~F~rg~~~ll~~IkRk~~~~~~ 58 (135)
+||+||||+||+|||||||+|||+||. ++.|||+|++|+||+++||++|+||++....
T Consensus 53 ~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wEF~n~~F~rg~~~LL~~I~rrk~~~~~ 112 (304)
T KOG0627|consen 53 LLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWEFSNPCFVRGQKLLLKNIKRRKSASRI 112 (304)
T ss_pred HhHHhccccCccceeeeecccceeecCCCCCceeecChhHhcChHHHHHHHhhhccccCC
Confidence 689999999999999999999999999 9999999999999999999999999988664
No 2
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []. Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....
Probab=99.85 E-value=1.1e-22 Score=142.78 Aligned_cols=54 Identities=67% Similarity=1.126 Sum_probs=44.1
Q ss_pred CCCCCCCcCChhhHHhhhcccCceeecCC---------cceeecCCcCCCChhchHHHhhhcC
Q 032729 1 MLPKYFKHNNFSSFIRQLNTYGFKKTSPK---------QWEFRHDKFRRGCRHLLVEIVRKKS 54 (135)
Q Consensus 1 vLp~~Fk~~~f~SFvRqLn~yGF~k~~~~---------~~ef~h~~F~rg~~~ll~~IkRk~~ 54 (135)
|||+||+|++|+||+||||+|||+|+.++ .|+|+||+|+||+|++|..|+|+++
T Consensus 40 vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~f~h~~F~r~~~~lL~~I~r~~~ 102 (103)
T PF00447_consen 40 VLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWEFYHPNFRRGQPDLLSKIKRRKS 102 (103)
T ss_dssp THHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEEEEETT-BTTBCCCTTTS---TT
T ss_pred ccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeEECCcCccCCCHHHHhhCccCCC
Confidence 78999999999999999999999999753 3999999999999999999999875
No 3
>smart00415 HSF heat shock factor.
Probab=99.85 E-value=2.4e-22 Score=141.93 Aligned_cols=52 Identities=63% Similarity=1.147 Sum_probs=49.6
Q ss_pred CCCCCCCcCChhhHHhhhcccCceeecC-----------CcceeecCCcCCCChhchHHHhhh
Q 032729 1 MLPKYFKHNNFSSFIRQLNTYGFKKTSP-----------KQWEFRHDKFRRGCRHLLVEIVRK 52 (135)
Q Consensus 1 vLp~~Fk~~~f~SFvRqLn~yGF~k~~~-----------~~~ef~h~~F~rg~~~ll~~IkRk 52 (135)
|||+||+|++|+||+||||+|||+|+.+ +.|+|+||+|+||+|+||..|+||
T Consensus 43 vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~~~~~~F~h~~F~Rg~~~lL~~I~Rk 105 (105)
T smart00415 43 LLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFTSDQWEFANPDFVRGQPELLRNIKRK 105 (105)
T ss_pred HHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCCCCceEEECcCccCcCHHHHHhCcCC
Confidence 6899999999999999999999999976 679999999999999999999996
No 4
>COG5169 HSF1 Heat shock transcription factor [Transcription]
Probab=99.84 E-value=5.2e-22 Score=161.49 Aligned_cols=117 Identities=32% Similarity=0.428 Sum_probs=76.3
Q ss_pred CCCCCCCcCChhhHHhhhcccCceeecC----------CcceeecCCcCCCChhchHHHhhhcCCCCCCcccccccC---
Q 032729 1 MLPKYFKHNNFSSFIRQLNTYGFKKTSP----------KQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFPAYLKAAS--- 67 (135)
Q Consensus 1 vLp~~Fk~~~f~SFvRqLn~yGF~k~~~----------~~~ef~h~~F~rg~~~ll~~IkRk~~~~~~~p~~~~~~s--- 67 (135)
|||+||||.||+|||||||+|||+||.. +.|||.|++|++|..++|+.|+|++..+........+..
T Consensus 51 iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~~~~n~~~wef~~~nF~~g~~~~L~~i~r~ka~~~~~~~~~~s~~~~~ 130 (282)
T COG5169 51 ILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQRSYYNENVWEFGNKNFQLGMIELLKKIKRKKAPSNRVDSNNESKDAMM 130 (282)
T ss_pred hhhhhhcccCHHHHHHHHHhcCcEeccCCcccccccchhheeecCchhccCcHHHHHHhhhhhcCcccccccCCCCcccc
Confidence 7999999999999999999999999971 249999999999999999999998876653211110000
Q ss_pred c-c-CccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 68 N-E-GSIASAAGKEHNNHLLLMEENESLKRERLQLQMQIAEFKALEIKLLDS 117 (135)
Q Consensus 68 ~-~-~~~~~~~~~~~~~~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~ 117 (135)
+ . +..+..++......+.|...+..++.....|+.-+..-......+++.
T Consensus 131 ~~~~~~~i~~~~~~~~~~S~l~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~ 182 (282)
T COG5169 131 NIEVENIILPQSELYNSLSSLSNVNQTLLLYLNELKEYNYRNLRTIDDINAM 182 (282)
T ss_pred chhhhhhhchhcccCcchhHHhhhhHHHhhhhccccchhhhcccccchhhhc
Confidence 0 0 011122223334456666666666666666555444333333333333
No 5
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.71 E-value=1.4 Score=26.63 Aligned_cols=28 Identities=32% Similarity=0.394 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 82 NHLLLMEENESLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 82 ~~~~L~~e~~~Lk~E~~~L~~el~~~k~ 109 (135)
.+..|..+++.|.+|+..|+.++..++.
T Consensus 13 ~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 13 SYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777777777777766654
No 6
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=88.06 E-value=1.4 Score=34.48 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=0.0
Q ss_pred ceeecCCcCCCChhchHHHhh
Q 032729 31 WEFRHDKFRRGCRHLLVEIVR 51 (135)
Q Consensus 31 ~ef~h~~F~rg~~~ll~~IkR 51 (135)
|==.||.|-..+|+||..|.-
T Consensus 14 yL~~~PdFf~~~~~ll~~l~~ 34 (225)
T PF04340_consen 14 YLRQHPDFFERHPELLAELRL 34 (225)
T ss_dssp ---------------------
T ss_pred HHHhCcHHHHhCHHHHHHcCC
Confidence 344799999999999998874
No 7
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=88.06 E-value=1.9 Score=36.67 Aligned_cols=29 Identities=28% Similarity=0.497 Sum_probs=24.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 81 NNHLLLMEENESLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 81 ~~~~~L~~e~~~Lk~E~~~L~~el~~~k~ 109 (135)
+...+|.+||.+||+|+..|+.++++++.
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~ 60 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLEN 60 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999998863
No 8
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=88.02 E-value=2.8 Score=26.54 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=28.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 81 NNHLLLMEENESLKRERLQLQMQIAEFKALEIKLLDS 117 (135)
Q Consensus 81 ~~~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~ 117 (135)
..+..+...+..+++|+..++..+..+++...+|+.+
T Consensus 7 n~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~l 43 (55)
T PF05377_consen 7 NELPRIESSINTVKKENEEISESVEKIEENVKDLLSL 43 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666778888888888888888888887777764
No 9
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=86.97 E-value=2.1 Score=31.64 Aligned_cols=40 Identities=23% Similarity=0.265 Sum_probs=32.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 80 HNNHLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLS 119 (135)
Q Consensus 80 ~~~~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~ 119 (135)
+.....|.+|++.|+.|+..+..|+...+.+++.+..+-.
T Consensus 80 E~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 80 EKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3446778888888899999999999888889998888764
No 10
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=81.34 E-value=2.9 Score=29.68 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 82 NHLLLMEENESLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 82 ~~~~L~~e~~~Lk~E~~~L~~el~~~k~ 109 (135)
.+..|.+||..|+.||..|+..+.....
T Consensus 30 ~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 30 QLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677788888888888888888877643
No 11
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=81.17 E-value=13 Score=24.51 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032729 86 LMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQYM 122 (135)
Q Consensus 86 L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~~~m 122 (135)
|.++|..|..++..|..+..++++-.+..-.-|..+.
T Consensus 30 Lke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL 66 (72)
T PF06005_consen 30 LKEKNNELKEENEELKEENEQLKQERNAWQERLRSLL 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333355555555555544444444444333
No 12
>PRK10963 hypothetical protein; Provisional
Probab=81.05 E-value=6.9 Score=30.76 Aligned_cols=18 Identities=11% Similarity=0.098 Sum_probs=15.1
Q ss_pred ecCCcCCCChhchHHHhh
Q 032729 34 RHDKFRRGCRHLLVEIVR 51 (135)
Q Consensus 34 ~h~~F~rg~~~ll~~IkR 51 (135)
.||+|--.+|+||..|.-
T Consensus 14 ~~PdFf~~h~~Ll~~L~l 31 (223)
T PRK10963 14 QNPDFFIRNARLVEQMRV 31 (223)
T ss_pred HCchHHhhCHHHHHhccC
Confidence 699999999999986543
No 13
>smart00338 BRLZ basic region leucin zipper.
Probab=80.90 E-value=4.3 Score=25.63 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 82 NHLLLMEENESLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 82 ~~~~L~~e~~~Lk~E~~~L~~el~~~k~ 109 (135)
....|..+|..|+.++..|..++..++.
T Consensus 34 ~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 34 KVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666655555555554
No 14
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=78.85 E-value=3.8 Score=29.30 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=22.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 81 NNHLLLMEENESLKRERLQLQMQIAEFK 108 (135)
Q Consensus 81 ~~~~~L~~e~~~Lk~E~~~L~~el~~~k 108 (135)
..+..|.+||..|+.||..|+..+.++.
T Consensus 29 ~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 29 KQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3467788899999999999999888763
No 15
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=78.70 E-value=12 Score=22.51 Aligned_cols=37 Identities=22% Similarity=0.154 Sum_probs=28.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 80 HNNHLLLMEENESLKRERLQLQMQIAEFKALEIKLLD 116 (135)
Q Consensus 80 ~~~~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~ 116 (135)
+.++..|....+.|+.++..|..|...++.....+-.
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888899999999988888888776655543
No 16
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=78.44 E-value=9.1 Score=26.37 Aligned_cols=37 Identities=32% Similarity=0.319 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 82 NHLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSL 118 (135)
Q Consensus 82 ~~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L 118 (135)
.+..|..++..|.+|+..|+.++...+.--+.|+..|
T Consensus 50 ~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 50 KVDELENENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3677778888888888888888888887777777654
No 17
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=78.22 E-value=14 Score=24.96 Aligned_cols=42 Identities=31% Similarity=0.321 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhh
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIKLLD---SLSQYMGN 124 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~---~L~~~m~~ 124 (135)
...|..++..|......|..++..++..+++|-. +|..|+++
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~n 62 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGN 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666655554432 44444443
No 18
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=78.10 E-value=12 Score=24.65 Aligned_cols=29 Identities=38% Similarity=0.393 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 86 LMEENESLKRERLQLQMQIAEFKALEIKL 114 (135)
Q Consensus 86 L~~e~~~Lk~E~~~L~~el~~~k~~~~kl 114 (135)
|.+++..|+.|+..|+++....+.-...|
T Consensus 37 L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 37 LKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333333
No 19
>smart00340 HALZ homeobox associated leucin zipper.
Probab=77.38 E-value=3.9 Score=24.61 Aligned_cols=18 Identities=39% Similarity=0.466 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032729 84 LLLMEENESLKRERLQLQ 101 (135)
Q Consensus 84 ~~L~~e~~~Lk~E~~~L~ 101 (135)
..|.+||.+|.+|+..|+
T Consensus 15 e~LteeNrRL~ke~~eLr 32 (44)
T smart00340 15 ESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555443
No 20
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=75.90 E-value=9.3 Score=30.57 Aligned_cols=29 Identities=41% Similarity=0.576 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 82 NHLLLMEENESLKRERLQLQMQIAEFKAL 110 (135)
Q Consensus 82 ~~~~L~~e~~~Lk~E~~~L~~el~~~k~~ 110 (135)
....+.+||++|++|+..|+.++.+++.+
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l 98 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQL 98 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778899999999999999988866543
No 21
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=75.24 E-value=7.2 Score=26.21 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~ 109 (135)
...|.+||.+|+.|...|..|++++++
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788999999999988888888765
No 22
>smart00338 BRLZ basic region leucin zipper.
Probab=75.14 E-value=17 Score=22.85 Aligned_cols=35 Identities=23% Similarity=0.158 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIKLLDS 117 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~ 117 (135)
...|..++..|..++..|..++..+......|-..
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788899999999999999999988776665544
No 23
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=74.77 E-value=3.6 Score=37.08 Aligned_cols=28 Identities=36% Similarity=0.465 Sum_probs=24.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 81 NNHLLLMEENESLKRERLQLQMQIAEFK 108 (135)
Q Consensus 81 ~~~~~L~~e~~~Lk~E~~~L~~el~~~k 108 (135)
..+++|..||+.||+||++|+++|..+-
T Consensus 309 ~rLq~ll~Ene~Lk~ENatLk~qL~~l~ 336 (655)
T KOG4343|consen 309 ARLQALLSENEQLKKENATLKRQLDELV 336 (655)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 3468888999999999999999998774
No 24
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=74.19 E-value=11 Score=23.63 Aligned_cols=32 Identities=25% Similarity=0.212 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIKL 114 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kl 114 (135)
+..|..++..|..++..|..++..++..+..|
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555444433
No 25
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=74.11 E-value=18 Score=22.69 Aligned_cols=31 Identities=35% Similarity=0.350 Sum_probs=24.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 80 HNNHLLLMEENESLKRERLQLQMQIAEFKAL 110 (135)
Q Consensus 80 ~~~~~~L~~e~~~Lk~E~~~L~~el~~~k~~ 110 (135)
+..+..|..+|..|+.++..|..++..++..
T Consensus 32 e~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 32 EEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4557788888888888888888888887653
No 26
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=73.89 E-value=11 Score=30.84 Aligned_cols=24 Identities=29% Similarity=0.163 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAE 106 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~ 106 (135)
...|.+||++|++|+..|..++..
T Consensus 68 ~~~l~~EN~~Lr~e~~~l~~~~~~ 91 (283)
T TIGR00219 68 VNNLEYENYKLRQELLKKNQQLEI 91 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888777555554
No 27
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=73.83 E-value=11 Score=23.04 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~ 109 (135)
...|..++..|..++..|..++..++.
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466777788888888888888777653
No 28
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=73.21 E-value=17 Score=24.50 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 86 LMEENESLKRERLQLQMQIAEFKALEIKLLDSL 118 (135)
Q Consensus 86 L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L 118 (135)
|.++|..|+.....-+.||.++..+...+-.-|
T Consensus 3 Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KL 35 (76)
T PF11544_consen 3 LIKQNKELKKKLNDKQEEIDRLNILVGSLRGKL 35 (76)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555444433333333
No 29
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.18 E-value=18 Score=28.89 Aligned_cols=81 Identities=14% Similarity=0.032 Sum_probs=42.4
Q ss_pred ceeecCCcCCCChhchHHHhhhcCCCCCCcccccccCccCccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 31 WEFRHDKFRRGCRHLLVEIVRKKSDPSVFPAYLKAASNEGSIASAAGKEHNNHLLLMEENESLKRERLQLQMQIAEFKAL 110 (135)
Q Consensus 31 ~ef~h~~F~rg~~~ll~~IkRk~~~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~L~~e~~~Lk~E~~~L~~el~~~k~~ 110 (135)
|=..||.|-..+++|+..|.-..+.... .+..+-.+..+.+.|..|..+...|...-..=.++
T Consensus 12 yL~~hPeFf~~h~~Ll~~L~lph~~~~t-----------------VSLve~ql~r~R~~~~~Le~~l~~L~~~A~~N~~l 74 (218)
T COG3159 12 YLRQHPEFFIQHAELLEELRLPHPVAGT-----------------VSLVERQLARLRNRIRELEEELAALMENARANERL 74 (218)
T ss_pred HHHhCcHHHHhCHHHHHHcCCCCCCCCe-----------------eehHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 5568999999999999988754322110 01122223444444555555544444333333345
Q ss_pred HHHHHHHHHHHhhhhhhh
Q 032729 111 EIKLLDSLSQYMGNFNHQ 128 (135)
Q Consensus 111 ~~kll~~L~~~m~~f~~q 128 (135)
..+++.+..++++--+.+
T Consensus 75 f~r~~~lq~~Ll~a~sl~ 92 (218)
T COG3159 75 FYRLHALQLDLLDARSLD 92 (218)
T ss_pred HHHHHHHHHHHHhcccHH
Confidence 555555555544443333
No 30
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=70.60 E-value=14 Score=20.75 Aligned_cols=26 Identities=31% Similarity=0.542 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 84 LLLMEENESLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 84 ~~L~~e~~~Lk~E~~~L~~el~~~k~ 109 (135)
..|..|.+.|++....|+..+++++.
T Consensus 4 qkL~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45778888899999999888888764
No 31
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=68.19 E-value=13 Score=31.60 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=25.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 81 NNHLLLMEENESLKRERLQLQMQIAEFKAL 110 (135)
Q Consensus 81 ~~~~~L~~e~~~Lk~E~~~L~~el~~~k~~ 110 (135)
.....|.+||++|++|+..|+.++.+++..
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~~e~l 86 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKSYEEA 86 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447889999999999999999998887643
No 32
>PHA03155 hypothetical protein; Provisional
Probab=66.38 E-value=12 Score=27.13 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=23.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 80 HNNHLLLMEENESLKRERLQLQMQIAE 106 (135)
Q Consensus 80 ~~~~~~L~~e~~~Lk~E~~~L~~el~~ 106 (135)
..++..|..|+.+|+-||..|++.+.+
T Consensus 7 ~~tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 7 CADVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456889999999999999999999855
No 33
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=66.08 E-value=30 Score=26.44 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 86 LMEENESLKRERLQLQMQIAEFKALEIKLLDSLS 119 (135)
Q Consensus 86 L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~ 119 (135)
|..+|+.|..|+..|.+++..+++-+..|+..+-
T Consensus 116 l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 116 LQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444443
No 34
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=65.18 E-value=15 Score=29.90 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032729 86 LMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQYMGN 124 (135)
Q Consensus 86 L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~~~m~~ 124 (135)
+...+..|.+|+..|+.++.+++....++...+..++..
T Consensus 220 ~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~~ 258 (269)
T KOG3119|consen 220 MAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPKP 258 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 344455666777777777777776666666666655543
No 35
>PF14645 Chibby: Chibby family
Probab=64.82 E-value=22 Score=25.54 Aligned_cols=39 Identities=31% Similarity=0.246 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032729 85 LLMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQYMG 123 (135)
Q Consensus 85 ~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~~~m~ 123 (135)
....++.++++++..|+.|-.-++-.++-|++.|+-...
T Consensus 68 ~~~~~~~~l~~~n~~L~EENN~Lklk~elLlDMLtetta 106 (116)
T PF14645_consen 68 ADGEENQRLRKENQQLEEENNLLKLKIELLLDMLTETTA 106 (116)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888888888888888888888885443
No 36
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=63.74 E-value=24 Score=28.66 Aligned_cols=31 Identities=29% Similarity=0.375 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIK 113 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~k 113 (135)
...|..||+.|+.++..|++++..++.....
T Consensus 224 ~~~leken~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 224 VAELEKENEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5778889999999999999998888876554
No 37
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=63.71 E-value=24 Score=28.51 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHh
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIKLLD---SLSQYM 122 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~---~L~~~m 122 (135)
...|.+|+..+..++..|+.|+..++.-.-+|.+ ||.+|-
T Consensus 95 n~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 95 NAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 4778888888888888889999888865555544 555544
No 38
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=63.48 E-value=28 Score=30.93 Aligned_cols=20 Identities=45% Similarity=0.469 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQM 102 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~ 102 (135)
++.|..+|+.|+.||..|++
T Consensus 75 ~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 75 LAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666777777777777766
No 39
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=63.39 E-value=36 Score=22.12 Aligned_cols=26 Identities=31% Similarity=0.247 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFK 108 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k 108 (135)
+..|..-.+.|+.||..|+.++..+.
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~~~~~ 34 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQEKTWR 34 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555556555555555554
No 40
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=62.00 E-value=32 Score=22.77 Aligned_cols=31 Identities=32% Similarity=0.225 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIK 113 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~k 113 (135)
...+..+|..|+-++..|+.++...+....+
T Consensus 38 ~~~~~keNieLKve~~~L~~el~~~~~~l~~ 68 (75)
T PF07989_consen 38 IEELLKENIELKVEVESLKRELQEKKKLLKE 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888888888888776654443
No 41
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=61.56 E-value=17 Score=25.44 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 82 NHLLLMEENESLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 82 ~~~~L~~e~~~Lk~E~~~L~~el~~~k~ 109 (135)
....+.++++.|+.++..|+.++..++.
T Consensus 35 q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 35 QVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3566677777888888888888777764
No 42
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=61.03 E-value=17 Score=26.41 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=22.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 81 NNHLLLMEENESLKRERLQLQMQIAEF 107 (135)
Q Consensus 81 ~~~~~L~~e~~~Lk~E~~~L~~el~~~ 107 (135)
.++..|..|+.+|+-||.+|++.+.+-
T Consensus 3 ~t~EeLaaeL~kLqmENk~LKkkl~~~ 29 (118)
T PF05812_consen 3 MTMEELAAELQKLQMENKALKKKLRQS 29 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 357889999999999999999988653
No 43
>PHA00728 hypothetical protein
Probab=60.97 E-value=14 Score=27.22 Aligned_cols=24 Identities=42% Similarity=0.620 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 87 MEENESLKRERLQLQMQIAEFKAL 110 (135)
Q Consensus 87 ~~e~~~Lk~E~~~L~~el~~~k~~ 110 (135)
..+++.|++|+..|+..++.+..+
T Consensus 4 ~teveql~keneelkkkla~leal 27 (151)
T PHA00728 4 LTEVEQLKKENEELKKKLAELEAL 27 (151)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHH
Confidence 357788888888888887777654
No 44
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=60.50 E-value=58 Score=23.48 Aligned_cols=37 Identities=22% Similarity=0.171 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLS 119 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~ 119 (135)
+..|..++.++-.|...++.+++++...-+.+-+=|.
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv 54 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIV 54 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555443333333333
No 45
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=59.92 E-value=12 Score=22.84 Aligned_cols=32 Identities=16% Similarity=0.324 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032729 91 ESLKRERLQLQMQIAEFKALEIKLLDSLSQYM 122 (135)
Q Consensus 91 ~~Lk~E~~~L~~el~~~k~~~~kll~~L~~~m 122 (135)
+.|+-.+..|..|+..++.+...|.+|-++..
T Consensus 14 e~l~vrv~eLEeEV~~LrKINrdLfdFSt~ii 45 (48)
T PF14077_consen 14 EQLRVRVSELEEEVRTLRKINRDLFDFSTRII 45 (48)
T ss_pred chheeeHHHHHHHHHHHHHHhHHHHhhhhhhc
Confidence 34556666667777777777778888776654
No 46
>smart00340 HALZ homeobox associated leucin zipper.
Probab=57.20 E-value=33 Score=20.62 Aligned_cols=31 Identities=35% Similarity=0.395 Sum_probs=26.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 80 HNNHLLLMEENESLKRERLQLQMQIAEFKAL 110 (135)
Q Consensus 80 ~~~~~~L~~e~~~Lk~E~~~L~~el~~~k~~ 110 (135)
+.++..|..=-+.|..||..|+.|++.++.+
T Consensus 4 EvdCe~LKrcce~LteeNrRL~ke~~eLral 34 (44)
T smart00340 4 EVDCELLKRCCESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4568888888999999999999999998863
No 47
>PF15058 Speriolin_N: Speriolin N terminus
Probab=56.67 E-value=25 Score=27.72 Aligned_cols=29 Identities=24% Similarity=0.181 Sum_probs=22.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 81 NNHLLLMEENESLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 81 ~~~~~L~~e~~~Lk~E~~~L~~el~~~k~ 109 (135)
.+++.|..++++|-+||..|++.+.-+++
T Consensus 5 ~~yeGlrhqierLv~ENeeLKKlVrLirE 33 (200)
T PF15058_consen 5 TNYEGLRHQIERLVRENEELKKLVRLIRE 33 (200)
T ss_pred cchHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45677788888888888888887776665
No 48
>PRK14127 cell division protein GpsB; Provisional
Probab=55.92 E-value=29 Score=24.78 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 82 NHLLLMEENESLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 82 ~~~~L~~e~~~Lk~E~~~L~~el~~~k~ 109 (135)
++..|.+|+..|+.++..|..++..++.
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666777777777777777666554
No 49
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=55.77 E-value=27 Score=22.16 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032729 84 LLLMEENESLKRERLQLQMQI 104 (135)
Q Consensus 84 ~~L~~e~~~Lk~E~~~L~~el 104 (135)
..|..|.+.|.++|..|+.-+
T Consensus 36 ~~l~~e~~~L~~qN~eLr~lL 56 (60)
T PF14775_consen 36 AALIQEKESLEQQNEELRSLL 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555544433
No 50
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=55.51 E-value=54 Score=25.05 Aligned_cols=31 Identities=35% Similarity=0.307 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 84 LLLMEENESLKRERLQLQMQIAEFKALEIKL 114 (135)
Q Consensus 84 ~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kl 114 (135)
..+..|++.|+.|+..|+.++..++....+|
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666555555555555443333
No 51
>PHA03162 hypothetical protein; Provisional
Probab=54.00 E-value=22 Score=26.34 Aligned_cols=26 Identities=27% Similarity=0.174 Sum_probs=22.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 81 NNHLLLMEENESLKRERLQLQMQIAE 106 (135)
Q Consensus 81 ~~~~~L~~e~~~Lk~E~~~L~~el~~ 106 (135)
.++..|..|+.+|+-||.+|++.+.+
T Consensus 13 ~tmEeLaaeL~kLqmENK~LKkkl~~ 38 (135)
T PHA03162 13 PTMEDLAAEIAKLQLENKALKKKIKE 38 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788999999999999999999844
No 52
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=52.84 E-value=37 Score=28.34 Aligned_cols=27 Identities=33% Similarity=0.335 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 84 LLLMEENESLKRERLQLQMQIAEFKAL 110 (135)
Q Consensus 84 ~~L~~e~~~Lk~E~~~L~~el~~~k~~ 110 (135)
..|..+|++||.....|..||+-+|++
T Consensus 258 ~~Le~rN~~LK~qa~~lerEI~ylKql 284 (294)
T KOG4571|consen 258 EGLEKRNEELKDQASELEREIRYLKQL 284 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555553
No 53
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.78 E-value=73 Score=21.28 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAE 106 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~ 106 (135)
..-|.-|++.|+..+..|.++.+.
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~ 43 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHH
Confidence 344445555555555555555543
No 54
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=50.35 E-value=56 Score=23.32 Aligned_cols=34 Identities=29% Similarity=0.200 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 87 MEENESLKRERLQLQMQIAEFKALEIKLLDSLSQ 120 (135)
Q Consensus 87 ~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~~ 120 (135)
..+..+|++++..|..|-.-++-+++-|++.|+-
T Consensus 71 ~~e~~rlkkk~~~LeEENNlLklKievLLDMLte 104 (108)
T cd07429 71 GREVLRLKKKNQQLEEENNLLKLKIEVLLDMLAE 104 (108)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777778887764
No 55
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=49.71 E-value=56 Score=23.05 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIKL 114 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kl 114 (135)
+..|..++..|-.||..|+.|...++....++
T Consensus 24 ~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 24 LEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556666666666666665544443
No 56
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=48.85 E-value=24 Score=25.34 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 82 NHLLLMEENESLKRERLQLQMQIAE 106 (135)
Q Consensus 82 ~~~~L~~e~~~Lk~E~~~L~~el~~ 106 (135)
....|++||..|+-|+..|+.++..
T Consensus 30 ~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 30 HLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 3677888899999999999888876
No 57
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=47.96 E-value=61 Score=22.22 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 84 LLLMEENESLKRERLQLQMQIAEFK 108 (135)
Q Consensus 84 ~~L~~e~~~Lk~E~~~L~~el~~~k 108 (135)
..+..+|+.|..|+..|..|.+..+
T Consensus 26 ~ka~~~~~kL~~en~qlk~Ek~~~~ 50 (87)
T PF10883_consen 26 KKAKKQNAKLQKENEQLKTEKAVAE 50 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666655443
No 58
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=47.95 E-value=54 Score=23.02 Aligned_cols=28 Identities=18% Similarity=0.061 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKAL 110 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~ 110 (135)
...+.+|+.+|++++..|+.|..-++..
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa 100 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEA 100 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788889999999888888776653
No 59
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=47.26 E-value=62 Score=26.08 Aligned_cols=34 Identities=12% Similarity=0.008 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIKLLD 116 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~ 116 (135)
+..|..|+.+|+.++..+..++.++++-+..+..
T Consensus 63 l~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~ 96 (263)
T PRK10803 63 LSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYL 96 (263)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555554443
No 60
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=46.24 E-value=96 Score=23.00 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 85 LLMEENESLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 85 ~L~~e~~~Lk~E~~~L~~el~~~k~ 109 (135)
.|..++..|++|+..|..|+.+|..
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~ 102 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRR 102 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555443
No 61
>PRK01203 prefoldin subunit alpha; Provisional
Probab=45.92 E-value=1e+02 Score=22.60 Aligned_cols=39 Identities=8% Similarity=-0.002 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032729 85 LLMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQYMG 123 (135)
Q Consensus 85 ~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~~~m~ 123 (135)
.+.+|.+-|..+...|.+++..++....++...+..+.+
T Consensus 4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~ 42 (130)
T PRK01203 4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSD 42 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456777888888888888888888887777776665543
No 62
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=45.25 E-value=1.3e+02 Score=23.24 Aligned_cols=41 Identities=17% Similarity=0.133 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQYMG 123 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~~~m~ 123 (135)
...+.+++..|+.|...|.+++.++.+--+.|..-....+.
T Consensus 95 l~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~ 135 (201)
T PF13851_consen 95 LKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQ 135 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556788888889988888888888766655554444333
No 63
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=45.14 E-value=94 Score=20.93 Aligned_cols=38 Identities=13% Similarity=0.157 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032729 86 LMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQYMG 123 (135)
Q Consensus 86 L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~~~m~ 123 (135)
|.+.+..|+..+...+.|..+++.-..-|-.++.++|.
T Consensus 28 LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 28 LQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433333344444444
No 64
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=44.32 E-value=79 Score=22.06 Aligned_cols=32 Identities=9% Similarity=0.012 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIKL 114 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kl 114 (135)
...+.++++.++.|+..++++...++...+.|
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677788888888888888887777665555
No 65
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=44.02 E-value=81 Score=19.87 Aligned_cols=26 Identities=12% Similarity=0.219 Sum_probs=17.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 81 NNHLLLMEENESLKRERLQLQMQIAE 106 (135)
Q Consensus 81 ~~~~~L~~e~~~Lk~E~~~L~~el~~ 106 (135)
+....+..||+.++.+...+.+-+..
T Consensus 14 ~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 14 SSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666777777777777777666644
No 66
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=43.60 E-value=59 Score=26.19 Aligned_cols=34 Identities=15% Similarity=0.032 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIKLLD 116 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~ 116 (135)
...|..+++.|+.|+..|+.+++.+....++|.+
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3467788888899998888888887766665554
No 67
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=42.85 E-value=1.2e+02 Score=23.86 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 92 SLKRERLQLQMQIAEFKALEIKLLDSLSQY 121 (135)
Q Consensus 92 ~Lk~E~~~L~~el~~~k~~~~kll~~L~~~ 121 (135)
.+..+...|.+++..+......|..++..+
T Consensus 81 ~q~~el~~L~~qi~~~~~~~~~l~p~m~~m 110 (251)
T PF11932_consen 81 SQEQELASLEQQIEQIEETRQELVPLMEQM 110 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444433
No 68
>PRK10884 SH3 domain-containing protein; Provisional
Probab=42.84 E-value=69 Score=25.14 Aligned_cols=28 Identities=7% Similarity=-0.069 Sum_probs=15.3
Q ss_pred cCceeec--CCcceeecCCcCCCChhchHH
Q 032729 21 YGFKKTS--PKQWEFRHDKFRRGCRHLLVE 48 (135)
Q Consensus 21 yGF~k~~--~~~~ef~h~~F~rg~~~ll~~ 48 (135)
.||.+|. .+.--|-|..+....|.+-..
T Consensus 65 ~~w~~Vr~~~G~~GWV~~~~Ls~~p~~~~r 94 (206)
T PRK10884 65 TNYAQIRDSKGRTAWIPLKQLSTTPSLRTR 94 (206)
T ss_pred CCEEEEEeCCCCEEeEEHHHhcCCccHHHH
Confidence 3566664 234456666666655554333
No 69
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=42.64 E-value=58 Score=21.08 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~ 109 (135)
.+.+..+++.+..|+..|+.|+..+..
T Consensus 33 ~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 33 LQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 455666777777777777777776654
No 70
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=41.85 E-value=88 Score=19.64 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEF 107 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~ 107 (135)
...|..+++.++.++..|..++..+
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555555555555
No 71
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=41.38 E-value=42 Score=28.77 Aligned_cols=28 Identities=25% Similarity=0.220 Sum_probs=21.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 79 EHNNHLLLMEENESLKRERLQLQMQIAE 106 (135)
Q Consensus 79 ~~~~~~~L~~e~~~Lk~E~~~L~~el~~ 106 (135)
....-..|.+||+.|+.|+..|..+..+
T Consensus 37 Lr~EN~~LKkEN~~Lk~eVerLE~e~l~ 64 (420)
T PF07407_consen 37 LRMENHSLKKENNDLKIEVERLENEMLR 64 (420)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445677899999999999888777654
No 72
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=41.18 E-value=37 Score=22.51 Aligned_cols=70 Identities=23% Similarity=0.226 Sum_probs=40.7
Q ss_pred hhHHhhhcccCceeecCCcceeecCCcCCCChhchHHHhhhcCCCCCCcccccccCccCccccccCcccchHHHHHHHHH
Q 032729 12 SSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVRKKSDPSVFPAYLKAASNEGSIASAAGKEHNNHLLLMEENE 91 (135)
Q Consensus 12 ~SFvRqLn~yGF~k~~~~~~ef~h~~F~rg~~~ll~~IkRk~~~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~L~~e~~ 91 (135)
.+|+..|.-||.=...... ..++|......-+..|.|=...=. ++. ......-.|.++++
T Consensus 14 ~~~l~~lve~Gli~p~~~~---~~~~f~~~~l~rl~~~~rL~~Dl~---------------in~--~gi~lil~LLd~i~ 73 (84)
T PF13591_consen 14 PEFLRELVEEGLIEPEGEE---EEWYFSEEDLARLRRIRRLHRDLG---------------INL--EGIALILDLLDRIE 73 (84)
T ss_pred HHHHHHHHHCCCeeecCCC---CeeeECHHHHHHHHHHHHHHHHcC---------------CCH--HHHHHHHHHHHHHH
Confidence 4789999999986654322 233344445555555555321100 000 01123577889999
Q ss_pred HHHHHHHHHH
Q 032729 92 SLKRERLQLQ 101 (135)
Q Consensus 92 ~Lk~E~~~L~ 101 (135)
.|++|+..|+
T Consensus 74 ~L~~el~~L~ 83 (84)
T PF13591_consen 74 QLRRELRELR 83 (84)
T ss_pred HHHHHHHHhh
Confidence 9999988775
No 73
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.15 E-value=96 Score=28.54 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQYMGNFNH 127 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~~~m~~f~~ 127 (135)
.+++.+|.+.++.....|..++.+.+..++.|+..+..+|+.|+-
T Consensus 604 l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~ 648 (741)
T KOG4460|consen 604 LSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHS 648 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccc
Confidence 344555666666666677777777778888888888888888754
No 74
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=41.01 E-value=25 Score=31.30 Aligned_cols=28 Identities=25% Similarity=0.308 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 86 LMEENESLKRERLQLQMQIAEFKALEIK 113 (135)
Q Consensus 86 L~~e~~~Lk~E~~~L~~el~~~k~~~~k 113 (135)
+.++++.|++|+..|++++..++...++
T Consensus 29 ~~qkie~L~kql~~Lk~q~~~l~~~v~k 56 (489)
T PF11853_consen 29 LLQKIEALKKQLEELKAQQDDLNDRVDK 56 (489)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccch
Confidence 3347788888888887777766554433
No 75
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=40.99 E-value=48 Score=25.88 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 89 ENESLKRERLQLQMQIAEFKALEIKLLDSLS 119 (135)
Q Consensus 89 e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~ 119 (135)
++-.+++++..+.++|..+..+..+|+++|.
T Consensus 108 q~~~~~~~v~~~~q~~~~l~~K~D~~L~llE 138 (189)
T TIGR02132 108 QAPALKKDVTKLKQDIKSLDKKLDKILELLE 138 (189)
T ss_pred hCchHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4457889999999999999999999999987
No 76
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=40.92 E-value=69 Score=20.32 Aligned_cols=41 Identities=17% Similarity=0.075 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 032729 84 LLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQYMGNFNH 127 (135)
Q Consensus 84 ~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~~~m~~f~~ 127 (135)
..|..|++.|+.|... .++ .+.+.++.|+.|...--.+|..
T Consensus 5 ~~l~~ei~~L~~el~~--~r~-~vS~a~~~li~y~~~~~DPll~ 45 (68)
T PF00631_consen 5 DQLKREIEQLRQELER--ERI-KVSKACKELIEYCESTPDPLLP 45 (68)
T ss_dssp HHHHHHHHHHHHHHTS-------HHHHHHHHHHHHHGTC-HHHH
T ss_pred HHHHHHHHHHHHHHcc--cce-eHHHHHHHHHHHhcCCCCceeC
Confidence 3444555555555443 223 5556788888887743333443
No 77
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=40.86 E-value=77 Score=18.73 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=11.0
Q ss_pred HHHHHHHHH-HHHHHHHHHHH
Q 032729 89 ENESLKRER-LQLQMQIAEFK 108 (135)
Q Consensus 89 e~~~Lk~E~-~~L~~el~~~k 108 (135)
+.+++++|. ..++.|+++++
T Consensus 4 dle~~KqEIL~EvrkEl~K~K 24 (40)
T PF08776_consen 4 DLERLKQEILEEVRKELQKVK 24 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 445566554 34555666655
No 78
>PF15456 Uds1: Up-regulated During Septation
Probab=40.72 E-value=1.2e+02 Score=21.87 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 87 MEENESLKRERLQLQMQIAEFKAL 110 (135)
Q Consensus 87 ~~e~~~Lk~E~~~L~~el~~~k~~ 110 (135)
.+|++.|++|...|..++..++.+
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~k 44 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRRK 44 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999988864
No 79
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=40.71 E-value=42 Score=20.10 Aligned_cols=24 Identities=21% Similarity=0.136 Sum_probs=11.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 032729 81 NNHLLLMEENESLKRERLQLQMQI 104 (135)
Q Consensus 81 ~~~~~L~~e~~~Lk~E~~~L~~el 104 (135)
..+..|..++..|..|+..|+.++
T Consensus 21 ~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 21 IKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ---------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHh
Confidence 346667777788888888877765
No 80
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=38.63 E-value=13 Score=28.45 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~ 109 (135)
...|..++++|+-|.-.|++|+ .+++
T Consensus 26 KE~L~~~~QRLkDE~RDLKqEl-~V~e 51 (166)
T PF04880_consen 26 KENLREEVQRLKDELRDLKQEL-IVQE 51 (166)
T ss_dssp HHHHHHCH-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 4567777778888888888887 4443
No 81
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=38.56 E-value=1.1e+02 Score=21.80 Aligned_cols=31 Identities=13% Similarity=0.069 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIK 113 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~k 113 (135)
+..|.+++..|-.||..|+.|-..++....+
T Consensus 24 l~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 24 LGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555556666555555554443
No 82
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=38.56 E-value=92 Score=25.60 Aligned_cols=35 Identities=29% Similarity=0.144 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIKLLDS 117 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~ 117 (135)
+..|.+||+.|..|+..|+..-..+=-..+++...
T Consensus 99 i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~ 133 (292)
T KOG4005|consen 99 IKDLTEENEILQNENDSLRAINESLLAKNHELDSE 133 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 44555556666665555554433333334444333
No 83
>PRK14127 cell division protein GpsB; Provisional
Probab=38.17 E-value=1.1e+02 Score=21.68 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSL 118 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L 118 (135)
+..+.++++.|-.|+..|+.++.+++.....+-.-+
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455667788888888888888888776655444433
No 84
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=36.88 E-value=72 Score=22.54 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQYMGN 124 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~~~m~~ 124 (135)
+..|..++..+......|.++|.-+...++.|-.+|..|-+.
T Consensus 59 I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE~~ 100 (116)
T PF05064_consen 59 ISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLEKQ 100 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888889999999999999999998888888888765544
No 85
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=36.74 E-value=60 Score=22.34 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAE 106 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~ 106 (135)
.-.|.++++.|++|+..|++++..
T Consensus 73 vl~LLd~i~~Lr~el~~L~~~l~~ 96 (101)
T PRK10265 73 ALTLLDEIAHLKQENRLLRQRLSR 96 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999888876543
No 86
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=36.35 E-value=1.1e+02 Score=19.33 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 86 LMEENESLKRERLQLQMQIAEFKALEIKLLDS 117 (135)
Q Consensus 86 L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~ 117 (135)
|......|-.++..|...+.+++.+.+.|..|
T Consensus 3 l~~~f~eL~D~~~~L~~n~~~L~~ihesL~~F 34 (58)
T PF08653_consen 3 LEPQFAELSDSMETLDKNMEQLNQIHESLSDF 34 (58)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666777777777777777766663
No 87
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=36.29 E-value=95 Score=25.86 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 82 NHLLLMEENESLKRERLQLQMQIAEFKALEIKLLDS 117 (135)
Q Consensus 82 ~~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~ 117 (135)
....|.+++..|++.+..++++++.++.+.+.|-+=
T Consensus 79 e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglrep 114 (389)
T PF06216_consen 79 EWISLNDQVSHLQHQNSEQRQQIREMREIIEGLREP 114 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 357788889999999999999999988766555443
No 88
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=35.55 E-value=66 Score=29.48 Aligned_cols=74 Identities=22% Similarity=0.189 Sum_probs=39.6
Q ss_pred CcCCCChhchHHHhhhcCCCCCCcccccccCccC----ccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 37 KFRRGCRHLLVEIVRKKSDPSVFPAYLKAASNEG----SIASAAGKEHNNHLLLMEENESLKRERLQLQMQIAEFKALEI 112 (135)
Q Consensus 37 ~F~rg~~~ll~~IkRk~~~~~~~p~~~~~~s~~~----~~~~~~~~~~~~~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~ 112 (135)
.|..-+..++..|+||...+... +++- +.|. ..+..+..|..|=++|.+|..++...+..|++..-
T Consensus 480 ~lte~QLslIrDIRRRgKNkvAA-------QnCRKRKLd~I~---nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls 549 (604)
T KOG3863|consen 480 KLTEEQLSLIRDIRRRGKNKVAA-------QNCRKRKLDCIL---NLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLS 549 (604)
T ss_pred ccCHHHHHHhhccccccccchhc-------cchhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555778888898885433310 1110 0011 12344555666666666666666666666666555
Q ss_pred HHHHHHHH
Q 032729 113 KLLDSLSQ 120 (135)
Q Consensus 113 kll~~L~~ 120 (135)
.|..-+.+
T Consensus 550 ~L~~~Vf~ 557 (604)
T KOG3863|consen 550 ELYQEVFQ 557 (604)
T ss_pred HHHHHHHH
Confidence 55544443
No 89
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=35.25 E-value=50 Score=20.44 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032729 86 LMEENESLKRERLQLQMQIAE 106 (135)
Q Consensus 86 L~~e~~~Lk~E~~~L~~el~~ 106 (135)
+..++.+++++...++.|+++
T Consensus 46 ~r~~~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 46 LRRRIRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344555556655555555554
No 90
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=35.21 E-value=2.7 Score=24.87 Aligned_cols=42 Identities=26% Similarity=0.345 Sum_probs=25.6
Q ss_pred ChhhHHhhhcccCceeecCCcceeecCCcCCCChhchHHHhh
Q 032729 10 NFSSFIRQLNTYGFKKTSPKQWEFRHDKFRRGCRHLLVEIVR 51 (135)
Q Consensus 10 ~f~SFvRqLn~yGF~k~~~~~~ef~h~~F~rg~~~ll~~IkR 51 (135)
.|.+|++-|+.|.-.++....+.=.=....+|+|||+....+
T Consensus 3 ~Y~~FL~il~~y~~~~~~~~~v~~~v~~Ll~~hpdLl~~F~~ 44 (47)
T PF02671_consen 3 VYNEFLKILNDYKKGRISRSEVIEEVSELLRGHPDLLEEFNR 44 (47)
T ss_dssp HHHHHHHHHHHHHCTCSCHHHHHHHHHHHTTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCHHHHHHHHh
Confidence 478899999998765554332222222466788888876543
No 91
>PF15294 Leu_zip: Leucine zipper
Probab=35.05 E-value=1.2e+02 Score=25.22 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEI 112 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~ 112 (135)
..-|..|+.+|+.||..|+.++..++..+.
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at 156 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQAT 156 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455778888899999888888887775443
No 92
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=35.03 E-value=58 Score=16.99 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032729 89 ENESLKRERLQLQMQIAEF 107 (135)
Q Consensus 89 e~~~Lk~E~~~L~~el~~~ 107 (135)
|+++|+.....|..+|...
T Consensus 2 E~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSEC 20 (23)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666543
No 93
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=34.94 E-value=94 Score=20.18 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEF 107 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~ 107 (135)
......++..|+.|+..|++++...
T Consensus 42 l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 42 LGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445567777777777777775543
No 94
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=34.93 E-value=1.3e+02 Score=24.87 Aligned_cols=29 Identities=21% Similarity=0.215 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 84 LLLMEENESLKRERLQLQMQIAEFKALEI 112 (135)
Q Consensus 84 ~~L~~e~~~Lk~E~~~L~~el~~~k~~~~ 112 (135)
..|.++.+.|+.|+..|+.++..++...+
T Consensus 35 ~~l~~~~~~lr~e~~~l~~~~~~~~~~~~ 63 (308)
T PF11382_consen 35 DSLEDQFDSLREENDELRAELDALQAQLN 63 (308)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555554433
No 95
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=33.59 E-value=14 Score=29.82 Aligned_cols=26 Identities=38% Similarity=0.477 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFK 108 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k 108 (135)
+..|+.||++|++||..|..|-+++.
T Consensus 138 Ve~L~aeNErLr~EnkqL~ae~arL~ 163 (243)
T PF08961_consen 138 VEFLLAENERLRRENKQLKAENARLL 163 (243)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67889999999999999999988884
No 96
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=33.26 E-value=1.8e+02 Score=20.82 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFK 108 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k 108 (135)
...+..+|+.|-..+..+..++..++
T Consensus 36 ~~~l~~~n~~lAe~nL~~~~~l~~~r 61 (150)
T PF07200_consen 36 REELLAENEELAEQNLSLEPELEELR 61 (150)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHH
Confidence 34444444444444444444444444
No 97
>PRK10884 SH3 domain-containing protein; Provisional
Probab=33.13 E-value=1.9e+02 Score=22.64 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032729 86 LMEENESLKRERLQLQMQIAE 106 (135)
Q Consensus 86 L~~e~~~Lk~E~~~L~~el~~ 106 (135)
|.+||++|+.|...++.++..
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 98
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=33.02 E-value=1.6e+02 Score=19.96 Aligned_cols=19 Identities=37% Similarity=0.314 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032729 84 LLLMEENESLKRERLQLQM 102 (135)
Q Consensus 84 ~~L~~e~~~Lk~E~~~L~~ 102 (135)
.-|.-|++.||.++..|.+
T Consensus 21 ~LLqmEieELKekn~~L~~ 39 (79)
T PRK15422 21 TLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 99
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=32.82 E-value=80 Score=20.20 Aligned_cols=13 Identities=38% Similarity=0.429 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 032729 86 LMEENESLKRERL 98 (135)
Q Consensus 86 L~~e~~~Lk~E~~ 98 (135)
|.+.|..|..||.
T Consensus 26 L~~~n~~Le~EN~ 38 (59)
T PF01166_consen 26 LEERNSQLEEENN 38 (59)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 100
>PHA01750 hypothetical protein
Probab=32.74 E-value=93 Score=20.53 Aligned_cols=12 Identities=33% Similarity=0.337 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 032729 95 RERLQLQMQIAE 106 (135)
Q Consensus 95 ~E~~~L~~el~~ 106 (135)
+|..+|+.|++.
T Consensus 42 ~ELdNL~~ei~~ 53 (75)
T PHA01750 42 SELDNLKTEIEE 53 (75)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 101
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=32.28 E-value=98 Score=20.66 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~ 109 (135)
.+.+..+.++|..|+..|+-|++.+..
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 455666666666666666666666553
No 102
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=32.04 E-value=2.2e+02 Score=23.61 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 84 LLLMEENESLKRERLQLQMQIAEFK 108 (135)
Q Consensus 84 ~~L~~e~~~Lk~E~~~L~~el~~~k 108 (135)
..+.+|++.|.+|...+.+++..++
T Consensus 60 ~~l~~eL~~LE~e~~~l~~el~~le 84 (314)
T PF04111_consen 60 EELLQELEELEKEREELDQELEELE 84 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444544444444
No 103
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=31.89 E-value=1.4e+02 Score=24.30 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 88 EENESLKRERLQLQMQIAEFKALEI 112 (135)
Q Consensus 88 ~e~~~Lk~E~~~L~~el~~~k~~~~ 112 (135)
.+..+|+.||..|+.|+.+++....
T Consensus 66 ~~~~~l~~EN~~Lr~e~~~l~~~~~ 90 (283)
T TIGR00219 66 KDVNNLEYENYKLRQELLKKNQQLE 90 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999888844333
No 104
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=31.41 E-value=1.3e+02 Score=18.37 Aligned_cols=33 Identities=15% Similarity=0.084 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 84 LLLMEENESLKRERLQLQMQIAEFKALEIKLLD 116 (135)
Q Consensus 84 ~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~ 116 (135)
..|...+...+.++..-..++..++...+.|+.
T Consensus 3 eeL~~~l~~~e~~~~~k~~~v~eLe~YiD~LL~ 35 (48)
T PF09457_consen 3 EELISLLKKQEEENARKDSRVRELEDYIDNLLV 35 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777778777775543
No 105
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=30.61 E-value=25 Score=23.90 Aligned_cols=19 Identities=21% Similarity=0.537 Sum_probs=16.7
Q ss_pred CcCChhhHHhhhcccCcee
Q 032729 7 KHNNFSSFIRQLNTYGFKK 25 (135)
Q Consensus 7 k~~~f~SFvRqLn~yGF~k 25 (135)
.+.|=..|.+.||+||+.+
T Consensus 61 Gy~N~KqllkrLN~f~it~ 79 (87)
T PF13331_consen 61 GYGNAKQLLKRLNMFGITR 79 (87)
T ss_pred CCCCHHHHHHHHHHcCCCH
Confidence 5678889999999999876
No 106
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=30.51 E-value=2.4e+02 Score=21.69 Aligned_cols=37 Identities=24% Similarity=0.136 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLS 119 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~ 119 (135)
...|.++++.|..++..|.++...++.-+..|+..+.
T Consensus 113 ~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~ 149 (170)
T PRK13923 113 IGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMN 149 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777777766666666554
No 107
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=30.20 E-value=2.5e+02 Score=22.49 Aligned_cols=27 Identities=26% Similarity=0.317 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 84 LLLMEENESLKRERLQLQMQIAEFKAL 110 (135)
Q Consensus 84 ~~L~~e~~~Lk~E~~~L~~el~~~k~~ 110 (135)
..+..|+..|+.+...|..++.++++.
T Consensus 14 ~~~~~e~~~Lk~kir~le~~l~~Lk~~ 40 (236)
T PF12017_consen 14 RTLKIENKKLKKKIRRLEKELKKLKQK 40 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666665543
No 108
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=30.10 E-value=1.2e+02 Score=18.86 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032729 86 LMEENESLKRERLQLQMQIAEFK 108 (135)
Q Consensus 86 L~~e~~~Lk~E~~~L~~el~~~k 108 (135)
...++..|..||..|+.+|...+
T Consensus 27 a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 27 ARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666665543
No 109
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=29.91 E-value=1.1e+02 Score=18.14 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032729 88 EENESLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 88 ~e~~~Lk~E~~~L~~el~~~k~ 109 (135)
.++.+||++...|+.+|..+.+
T Consensus 27 ~~l~~LKk~kL~LKDei~~ll~ 48 (49)
T PF04325_consen 27 EELERLKKEKLRLKDEIYRLLR 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4667899999999988887653
No 110
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=29.79 E-value=1.8e+02 Score=23.76 Aligned_cols=28 Identities=36% Similarity=0.375 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKAL 110 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~ 110 (135)
...+..||+.|+.++..+.+.+.+...+
T Consensus 68 ~~~~~~en~~Lk~~l~~~~~~~~~~~~l 95 (284)
T COG1792 68 LKDLALENEELKKELAELEQLLEEVESL 95 (284)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4555566777777766665555554443
No 111
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=29.77 E-value=1.9e+02 Score=20.00 Aligned_cols=35 Identities=20% Similarity=0.084 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 82 NHLLLMEENESLKRERLQLQMQIAEFKALEIKLLD 116 (135)
Q Consensus 82 ~~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~ 116 (135)
++..|.-++..++.+...+..++..+.+..+-|++
T Consensus 66 dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 66 DVHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555666666666666666555555444443
No 112
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=29.75 E-value=2.1e+02 Score=20.48 Aligned_cols=42 Identities=14% Similarity=0.157 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 032729 87 MEENESLKRERLQLQMQIAEFKALEIKLLDSLSQYMGNFNHQ 128 (135)
Q Consensus 87 ~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~~~m~~f~~q 128 (135)
..+++.+|.+...+..++..++.-+..+..-+...+++|+.+
T Consensus 54 ~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~ 95 (150)
T PF07200_consen 54 EPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPD 95 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHH
Confidence 355566666666666666666665555555555555555543
No 113
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=29.31 E-value=1.4e+02 Score=22.57 Aligned_cols=29 Identities=31% Similarity=0.244 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 84 LLLMEENESLKRERLQLQMQIAEFKALEI 112 (135)
Q Consensus 84 ~~L~~e~~~Lk~E~~~L~~el~~~k~~~~ 112 (135)
..+.+|++.|++|......++..++...+
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666665444
No 114
>PF15058 Speriolin_N: Speriolin N terminus
Probab=29.10 E-value=80 Score=24.93 Aligned_cols=23 Identities=26% Similarity=0.188 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 032729 82 NHLLLMEENESLKRERLQLQMQI 104 (135)
Q Consensus 82 ~~~~L~~e~~~Lk~E~~~L~~el 104 (135)
.+..|+.||++||+.+..++..+
T Consensus 13 qierLv~ENeeLKKlVrLirEN~ 35 (200)
T PF15058_consen 13 QIERLVRENEELKKLVRLIRENH 35 (200)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHH
Confidence 46788999999999887776554
No 115
>PF14645 Chibby: Chibby family
Probab=28.53 E-value=1.3e+02 Score=21.42 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 82 NHLLLMEENESLKRERLQLQMQIAEF 107 (135)
Q Consensus 82 ~~~~L~~e~~~Lk~E~~~L~~el~~~ 107 (135)
....+.+++..|+.||..|+-++.-+
T Consensus 72 ~~~~l~~~n~~L~EENN~Lklk~elL 97 (116)
T PF14645_consen 72 ENQRLRKENQQLEEENNLLKLKIELL 97 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777777777776666544
No 116
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=27.47 E-value=56 Score=19.43 Aligned_cols=29 Identities=28% Similarity=0.471 Sum_probs=19.4
Q ss_pred hhhHHhhhcccCceeec--CCcceeecCCcC
Q 032729 11 FSSFIRQLNTYGFKKTS--PKQWEFRHDKFR 39 (135)
Q Consensus 11 f~SFvRqLn~yGF~k~~--~~~~ef~h~~F~ 39 (135)
|..+++-|..+||..+. .+...|.|+.-.
T Consensus 1 ~~el~k~L~~~G~~~~r~~GSH~~~~~~~~~ 31 (56)
T PF07927_consen 1 WRELIKLLEKAGFEEVRQKGSHHIFRHPGGR 31 (56)
T ss_dssp -HHHHHHHHHTT-EEEEEETTEEEEE-TTS-
T ss_pred ChHHHHHHHHCCCEEecCCCCEEEEEeCCCC
Confidence 45688899999998875 566788887643
No 117
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=27.22 E-value=2.4e+02 Score=24.00 Aligned_cols=44 Identities=32% Similarity=0.354 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQYMGNFNHQNKVR 132 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~~~m~~f~~q~~~~ 132 (135)
+..|.++|+-+-+|...|.++. +-|..|+.+-..|.+. +|.||.
T Consensus 42 ~~~l~~~~~~~~~~~~~~~~qy----recqell~lyq~ylse--qq~kl~ 85 (328)
T PF15369_consen 42 IRQLEEQNELIIKEREDLQQQY----RECQELLSLYQKYLSE--QQEKLT 85 (328)
T ss_pred HHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH--HHHHHh
Confidence 4445555555555555444332 4477888888888888 888764
No 118
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=26.93 E-value=1.5e+02 Score=21.10 Aligned_cols=9 Identities=11% Similarity=0.265 Sum_probs=5.0
Q ss_pred HHHHHHhhh
Q 032729 116 DSLSQYMGN 124 (135)
Q Consensus 116 ~~L~~~m~~ 124 (135)
+++.++|+.
T Consensus 98 QYIeNLMSa 106 (120)
T KOG3650|consen 98 QYIENLMSA 106 (120)
T ss_pred HHHHHHHhh
Confidence 455566654
No 119
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=26.44 E-value=2.2e+02 Score=23.47 Aligned_cols=39 Identities=26% Similarity=0.238 Sum_probs=32.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 80 HNNHLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSL 118 (135)
Q Consensus 80 ~~~~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L 118 (135)
+.....|.+|++.|+.|...+..++...++....+..-+
T Consensus 38 ~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~~l 76 (308)
T PF11382_consen 38 EDQFDSLREENDELRAELDALQAQLNAADQFIAAVAPRL 76 (308)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999998887766655544
No 120
>KOG3316 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.40 E-value=1.4e+02 Score=22.86 Aligned_cols=41 Identities=22% Similarity=0.291 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhh--hhhh
Q 032729 88 EENESLKRERLQLQMQIAEFKALEIKLLDSLSQ-YMGN--FNHQ 128 (135)
Q Consensus 88 ~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~~-~m~~--f~~q 128 (135)
+=.|+|-+|....+.++..||-+|+++-..+.. .+.+ .|||
T Consensus 51 ~L~Erl~~e~~rf~deLeimKFiCkDfW~~VF~KQiDNLrTNhr 94 (163)
T KOG3316|consen 51 KLSERLTRERNRFKDELEIMKFICKDFWSIVFKKQIDNLRTNHR 94 (163)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccccCC
Confidence 446789999999999999999999988776653 4444 5554
No 121
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=26.16 E-value=1.2e+02 Score=21.44 Aligned_cols=28 Identities=21% Similarity=0.160 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKAL 110 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~ 110 (135)
.+.+.+|++.|..++..|..++..++.-
T Consensus 59 i~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 59 IAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4566778888888888888888777754
No 122
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=26.13 E-value=1.5e+02 Score=23.42 Aligned_cols=29 Identities=34% Similarity=0.298 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 84 LLLMEENESLKRERLQLQMQIAEFKALEI 112 (135)
Q Consensus 84 ~~L~~e~~~Lk~E~~~L~~el~~~k~~~~ 112 (135)
..-.+||+.|.+++..+..++..++....
T Consensus 121 ~eaL~ENe~Lh~~ie~~~eEi~~lk~en~ 149 (200)
T PF07412_consen 121 EEALEENEKLHKEIEQKDEEIAKLKEENE 149 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33357899999999998888888886433
No 123
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=25.82 E-value=2e+02 Score=22.49 Aligned_cols=33 Identities=27% Similarity=0.330 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIKLL 115 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll 115 (135)
...+..||..|+++...|.++...++....+|-
T Consensus 158 ~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le 190 (206)
T PF14988_consen 158 TRSIKRENQQLRKELLQLIQEAQKLEARKSQLE 190 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888888877776555443
No 124
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=25.59 E-value=1.1e+02 Score=20.96 Aligned_cols=16 Identities=13% Similarity=0.436 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 032729 95 RERLQLQMQIAEFKAL 110 (135)
Q Consensus 95 ~E~~~L~~el~~~k~~ 110 (135)
-||..|+.++.+++..
T Consensus 51 ~EN~rL~ee~rrl~~f 66 (86)
T PF12711_consen 51 MENIRLREELRRLQSF 66 (86)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555543
No 125
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=25.55 E-value=2.2e+02 Score=19.23 Aligned_cols=31 Identities=26% Similarity=0.172 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIK 113 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~k 113 (135)
...|.++...++.+...+..++..+....+.
T Consensus 69 ~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555554444333
No 126
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=25.35 E-value=2.6e+02 Score=20.07 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032729 100 LQMQIAEFKALEIKLLD 116 (135)
Q Consensus 100 L~~el~~~k~~~~kll~ 116 (135)
|+.++..++..++.+++
T Consensus 73 L~~el~~l~~ry~t~Le 89 (120)
T PF12325_consen 73 LEQELEELQQRYQTLLE 89 (120)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444433333333
No 127
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.06 E-value=1.1e+02 Score=26.03 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~ 109 (135)
.+.|.+|+++|+.|......|+..+..
T Consensus 26 k~qL~deIq~Lk~Ei~ev~~eid~~~~ 52 (395)
T KOG0930|consen 26 KQELLDEIQRLKDEIAEVMEEIDNLES 52 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 467889999999999999988887653
No 128
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=24.99 E-value=1.8e+02 Score=18.19 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032729 86 LMEENESLKRERLQLQMQIAEFK 108 (135)
Q Consensus 86 L~~e~~~Lk~E~~~L~~el~~~k 108 (135)
+..|+.+|.++...+..++..+.
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~ 24 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLE 24 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777776665
No 129
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=24.79 E-value=2e+02 Score=18.59 Aligned_cols=38 Identities=16% Similarity=0.106 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFK-------ALEIKLLDSLSQ 120 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k-------~~~~kll~~L~~ 120 (135)
+..|..||..|+.+...+..|=.++. ..++.||.-|-.
T Consensus 16 ~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~ 60 (65)
T TIGR02449 16 LERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKA 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45666666666666666655555444 456666655543
No 130
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=24.76 E-value=2e+02 Score=18.39 Aligned_cols=40 Identities=18% Similarity=0.091 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 82 NHLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQY 121 (135)
Q Consensus 82 ~~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~~~ 121 (135)
.++.+.+-++.|-..+...+.+|.++++....|..-|..+
T Consensus 12 ~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 12 KLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555566666666666666666666555555554443
No 131
>COG2841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.41 E-value=1.2e+02 Score=20.13 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032729 88 EENESLKRERLQLQMQIAEFK 108 (135)
Q Consensus 88 ~e~~~Lk~E~~~L~~el~~~k 108 (135)
+|+..|+++...|+.||..+=
T Consensus 46 ~ev~~LKKqkL~LKDEi~~~L 66 (72)
T COG2841 46 AEVSNLKKQKLQLKDEIASIL 66 (72)
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 567888888888888877653
No 132
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=24.35 E-value=3.3e+02 Score=20.94 Aligned_cols=30 Identities=23% Similarity=0.174 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEI 112 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~ 112 (135)
...|.+|+.+|..|...|..-..+.+.+.|
T Consensus 122 ~~eL~~eI~~L~~~i~~le~~~~~~k~Lrn 151 (171)
T PF04799_consen 122 KNELEDEIKQLEKEIQRLEEIQSKSKTLRN 151 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555444444443333
No 133
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=24.23 E-value=2.7e+02 Score=25.85 Aligned_cols=37 Identities=30% Similarity=0.278 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 84 LLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQ 120 (135)
Q Consensus 84 ~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~~ 120 (135)
..+...+++|..|+..|..++.+|+....+|-.-|..
T Consensus 425 ~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~ 461 (652)
T COG2433 425 KKLEETVERLEEENSELKRELEELKREIEKLESELER 461 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555544444444443
No 134
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=24.18 E-value=3.2e+02 Score=24.38 Aligned_cols=26 Identities=15% Similarity=0.078 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 84 LLLMEENESLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 84 ~~L~~e~~~Lk~E~~~L~~el~~~k~ 109 (135)
..+..+++.|..+|..|+.|..++++
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666654
No 135
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=23.87 E-value=3e+02 Score=20.19 Aligned_cols=36 Identities=25% Similarity=0.206 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 032729 86 LMEENESLKRERLQLQMQIAEFKALE---IKLLDSLSQY 121 (135)
Q Consensus 86 L~~e~~~Lk~E~~~L~~el~~~k~~~---~kll~~L~~~ 121 (135)
..+.++.|+.||.-|+.-+..|+.++ .+-++.|..-
T Consensus 83 KdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~q 121 (126)
T PF13118_consen 83 KDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQ 121 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34567899999999999999999877 6666666543
No 136
>PF14420 Clr5: Clr5 domain
Probab=23.74 E-value=39 Score=20.65 Aligned_cols=15 Identities=27% Similarity=0.720 Sum_probs=11.8
Q ss_pred hhhHHhhhcccCcee
Q 032729 11 FSSFIRQLNTYGFKK 25 (135)
Q Consensus 11 f~SFvRqLn~yGF~k 25 (135)
-..+-++|..|||+|
T Consensus 40 ~rqy~~r~~~Wg~~K 54 (54)
T PF14420_consen 40 KRQYKRRFKKWGFRK 54 (54)
T ss_pred HHHHHHHHHHcCCCC
Confidence 456778888999986
No 137
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=22.84 E-value=3.3e+02 Score=22.57 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032729 86 LMEENESLKRERLQLQMQIAEF 107 (135)
Q Consensus 86 L~~e~~~Lk~E~~~L~~el~~~ 107 (135)
|..|.+.|.+|...|+.+...+
T Consensus 69 LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 69 LEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 138
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=22.71 E-value=1.8e+02 Score=21.44 Aligned_cols=26 Identities=31% Similarity=0.302 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFK 108 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k 108 (135)
...|.+++..|+.+...|..++..+.
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLS 106 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666665554
No 139
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=22.70 E-value=64 Score=20.68 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 032729 82 NHLLLMEENESLKRERLQLQM 102 (135)
Q Consensus 82 ~~~~L~~e~~~Lk~E~~~L~~ 102 (135)
+...|-+|+++|++++..|.=
T Consensus 22 tL~~LH~EIe~Lq~~~~dL~~ 42 (60)
T PF14916_consen 22 TLKGLHAEIERLQKRNKDLTF 42 (60)
T ss_pred HHHHHHHHHHHHHHhccccce
Confidence 355666677777776665543
No 140
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=22.24 E-value=3.7e+02 Score=20.75 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAE 106 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~ 106 (135)
...+..+++.|..||..|++-..+
T Consensus 21 l~elq~~l~~l~~ENk~Lk~lq~R 44 (194)
T PF15619_consen 21 LAELQRKLQELRKENKTLKQLQKR 44 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555444333
No 141
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=22.10 E-value=2e+02 Score=17.50 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 032729 93 LKRERLQLQMQIAEFK 108 (135)
Q Consensus 93 Lk~E~~~L~~el~~~k 108 (135)
|++.+..|..++..++
T Consensus 4 LrqQv~aL~~qv~~Lq 19 (46)
T PF09006_consen 4 LRQQVEALQGQVQRLQ 19 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444333
No 142
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=21.93 E-value=1.8e+02 Score=19.89 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFK 108 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k 108 (135)
...|...+..+..+|..|..+|..++
T Consensus 82 ~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 82 REQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566666667777777766666554
No 143
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=21.67 E-value=2.3e+02 Score=18.15 Aligned_cols=27 Identities=33% Similarity=0.255 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 92 SLKRERLQLQMQIAEFKALEIKLLDSL 118 (135)
Q Consensus 92 ~Lk~E~~~L~~el~~~k~~~~kll~~L 118 (135)
.++.|...|..++.++-..++.-|.-|
T Consensus 42 ~~~~el~~l~~~i~~~~~~~~~~lk~l 68 (103)
T PF00804_consen 42 ELKRELDELTDEIKQLFQKIKKRLKQL 68 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333333
No 144
>PF13974 YebO: YebO-like protein
Probab=21.63 E-value=2.1e+02 Score=19.37 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 95 RERLQLQMQIAEFKALEIKLLDSLS 119 (135)
Q Consensus 95 ~E~~~L~~el~~~k~~~~kll~~L~ 119 (135)
.|...|.+++..+++.++.|+.-|.
T Consensus 26 NEQI~LL~~ileqQKrQn~LL~rL~ 50 (80)
T PF13974_consen 26 NEQIELLEEILEQQKRQNALLRRLC 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666677666666777665554
No 145
>PRK00846 hypothetical protein; Provisional
Probab=21.57 E-value=2.6e+02 Score=18.66 Aligned_cols=29 Identities=17% Similarity=0.105 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 88 EENESLKRERLQLQMQIAEFKALEIKLLD 116 (135)
Q Consensus 88 ~e~~~Lk~E~~~L~~el~~~k~~~~kll~ 116 (135)
+-++.|-..+...++++..+++...-|.+
T Consensus 27 ~tIe~LN~~v~~qq~~I~~L~~ql~~L~~ 55 (77)
T PRK00846 27 QALTELSEALADARLTGARNAELIRHLLE 55 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445444444333333
No 146
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=21.35 E-value=3.5e+02 Score=20.03 Aligned_cols=30 Identities=17% Similarity=0.109 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEI 112 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~ 112 (135)
...|..+...++.|...|.+++..++..+.
T Consensus 68 l~~L~~EL~~l~sEk~~L~k~lq~~q~kv~ 97 (140)
T PF10473_consen 68 LNQLELELDTLRSEKENLDKELQKKQEKVS 97 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666777666666666654433
No 147
>PRK10722 hypothetical protein; Provisional
Probab=21.13 E-value=3.2e+02 Score=22.31 Aligned_cols=35 Identities=23% Similarity=0.172 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 87 MEENESLKRERLQLQMQIAEFKALEIKLLDSLSQY 121 (135)
Q Consensus 87 ~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~~~ 121 (135)
..++++|+.++..|+.++....++.+.|-+.=.++
T Consensus 175 D~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIERqL 209 (247)
T PRK10722 175 DSELDALRQQQQRLQYQLELTTRKLENLTDIERQL 209 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777888888888888888777777666554433
No 148
>PHA02109 hypothetical protein
Probab=21.09 E-value=4e+02 Score=21.01 Aligned_cols=38 Identities=11% Similarity=0.125 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032729 87 MEENESLKRERLQLQMQIAEFKALEIKLLDSLSQYMGN 124 (135)
Q Consensus 87 ~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~~~m~~ 124 (135)
.+|+..|-.....|..|+++++.+.-.+-+++..+.+.
T Consensus 192 L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~Vk~~LSE 229 (233)
T PHA02109 192 LKQISELTIKLEALSDEACQVKHKILNLRAEVKRRLSE 229 (233)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777787888888888888887766667777776655
No 149
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=20.91 E-value=3.8e+02 Score=21.22 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 88 EENESLKRERLQLQMQIAEFKALEIKL 114 (135)
Q Consensus 88 ~e~~~Lk~E~~~L~~el~~~k~~~~kl 114 (135)
....+++.||..|+.|++.++....++
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777776655444
No 150
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=20.47 E-value=3.7e+02 Score=19.95 Aligned_cols=35 Identities=20% Similarity=0.110 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 84 LLLMEENESLKRERLQLQMQIAEFKALEIKLLDSL 118 (135)
Q Consensus 84 ~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L 118 (135)
..|..+.+.+..|...+.+++...+...++++..+
T Consensus 69 aKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~ 103 (161)
T PF04420_consen 69 AKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKV 103 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555444444444433
No 151
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=20.29 E-value=3.1e+02 Score=24.50 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFK 108 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k 108 (135)
...|.++++.|++|...+..+...++
T Consensus 78 asELEKqLaaLrqElq~~saq~~dle 103 (475)
T PRK13729 78 AAQMQKQYEEIRRELDVLNKQRGDDQ 103 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 45556666666666554444443333
No 152
>PHA03385 IX capsid protein IX,hexon associated protein IX; Provisional
Probab=20.26 E-value=2.1e+02 Score=21.06 Aligned_cols=30 Identities=23% Similarity=0.451 Sum_probs=23.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 80 HNNHLLLMEENESLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 80 ~~~~~~L~~e~~~Lk~E~~~L~~el~~~k~ 109 (135)
++.+..|..+.+.|.++...|.+++.+++.
T Consensus 99 ed~L~~llaqLealsqqL~~ls~qv~~L~~ 128 (135)
T PHA03385 99 EDKLLVLLAQLEALSQQLQELSQQVAQLRE 128 (135)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345677788888888888888888888765
No 153
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=20.22 E-value=2.7e+02 Score=20.71 Aligned_cols=34 Identities=21% Similarity=0.163 Sum_probs=24.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 79 EHNNHLLLMEENESLKRERLQLQMQIAEFKALEI 112 (135)
Q Consensus 79 ~~~~~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~ 112 (135)
.+.....+.++++.++.+...+..++..++....
T Consensus 44 lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 77 (151)
T PF14584_consen 44 LEDLLNELFDQIDELKEELEELEKRIEELEEKLR 77 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666778888888888888888877776544
No 154
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=20.18 E-value=3.5e+02 Score=22.68 Aligned_cols=34 Identities=24% Similarity=0.190 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIKLLD 116 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~ 116 (135)
.+.|..|.+.|.++|..|+.++..+.+-+.-|-+
T Consensus 250 ~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 250 KEALLGELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888888888887765444433
No 155
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.14 E-value=2e+02 Score=19.35 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=17.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 81 NNHLLLMEENESLKRERLQLQMQIAEF 107 (135)
Q Consensus 81 ~~~~~L~~e~~~Lk~E~~~L~~el~~~ 107 (135)
.....+..|+..|+.++..|...+..+
T Consensus 12 ~~~e~~~~e~~~L~~~~~~L~~~~R~~ 38 (100)
T PF01486_consen 12 SQHEELQQEIAKLRKENESLQKELRHL 38 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345666777777777777777665544
No 156
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=20.03 E-value=2.6e+02 Score=18.15 Aligned_cols=35 Identities=26% Similarity=0.191 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQ 120 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~~ 120 (135)
+..|..||..|| .+|++--..|+.-++.|..|=..
T Consensus 8 l~~LL~EN~~LK---ealrQ~N~~Mker~e~l~~wqe~ 42 (68)
T PF11577_consen 8 LQELLQENQDLK---EALRQNNQAMKERFEELLAWQEK 42 (68)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667776654 23333334444444444444333
Done!