Query 032729
Match_columns 135
No_of_seqs 162 out of 863
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 08:01:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032729.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032729hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hks_A Heat-shock transcriptio 99.9 6.3E-26 2.2E-30 159.8 2.5 52 1-52 45-106 (106)
2 2ldu_A Heat shock factor prote 99.9 6.2E-26 2.1E-30 164.3 1.5 55 1-55 58-123 (125)
3 3hts_B Heat shock transcriptio 99.7 6.7E-19 2.3E-23 123.4 1.2 37 1-37 53-100 (102)
4 1deb_A APC protein, adenomatou 91.2 0.64 2.2E-05 28.1 5.4 28 82-109 4-31 (54)
5 4dzn_A Coiled-coil peptide CC- 91.2 0.57 2E-05 25.2 4.7 27 83-109 4-30 (33)
6 1hjb_A Ccaat/enhancer binding 90.9 0.36 1.2E-05 32.2 4.5 37 86-122 41-77 (87)
7 2wt7_A Proto-oncogene protein 89.9 1.3 4.3E-05 27.4 6.2 37 83-119 25-61 (63)
8 2yy0_A C-MYC-binding protein; 88.8 0.75 2.6E-05 27.8 4.4 30 81-110 19-48 (53)
9 1hjb_A Ccaat/enhancer binding 87.8 1.5 5.1E-05 29.2 5.8 43 81-123 43-85 (87)
10 3m48_A General control protein 87.6 1.1 3.7E-05 24.7 4.1 27 84-110 3-29 (33)
11 1kd8_B GABH BLL, GCN4 acid bas 85.7 3 0.0001 23.3 5.3 30 83-112 3-32 (36)
12 1ci6_A Transcription factor AT 85.2 3.5 0.00012 25.4 6.2 32 83-114 25-56 (63)
13 1t2k_D Cyclic-AMP-dependent tr 84.8 2 6.8E-05 26.2 4.9 27 83-109 31-57 (61)
14 1t2k_D Cyclic-AMP-dependent tr 84.3 4 0.00014 24.8 6.2 36 83-118 24-59 (61)
15 3c3g_A Alpha/beta peptide with 84.2 3 0.0001 22.9 4.8 29 83-111 2-30 (33)
16 2yy0_A C-MYC-binding protein; 84.1 2.2 7.6E-05 25.7 4.8 29 88-116 19-47 (53)
17 1uo4_A General control protein 83.4 2.5 8.4E-05 23.4 4.3 28 83-110 3-30 (34)
18 3c3f_A Alpha/beta peptide with 83.1 3.5 0.00012 22.7 4.8 29 83-111 3-31 (34)
19 2oxj_A Hybrid alpha/beta pepti 82.1 4 0.00014 22.5 4.8 28 83-110 3-30 (34)
20 2wt7_A Proto-oncogene protein 81.7 3.1 0.00011 25.6 4.9 33 79-111 28-60 (63)
21 1gu4_A CAAT/enhancer binding p 81.7 1.7 5.7E-05 28.3 3.7 25 84-108 46-70 (78)
22 1kd8_A GABH AIV, GCN4 acid bas 81.6 4.1 0.00014 22.7 4.8 29 83-111 3-31 (36)
23 1ci6_A Transcription factor AT 80.2 3.3 0.00011 25.6 4.6 33 80-112 29-61 (63)
24 3ra3_B P2F; coiled coil domain 79.7 2.5 8.4E-05 21.9 3.2 23 85-107 4-26 (28)
25 2wq1_A General control protein 79.3 5.9 0.0002 21.7 5.0 29 83-111 2-30 (33)
26 2wt7_B Transcription factor MA 79.1 2.7 9.3E-05 28.1 4.2 35 80-114 54-88 (90)
27 3e98_A GAF domain of unknown f 78.2 4.9 0.00017 31.1 6.1 22 30-51 38-59 (252)
28 1a93_B MAX protein, coiled coi 77.9 2.9 9.9E-05 23.2 3.3 25 83-107 9-33 (34)
29 2bni_A General control protein 77.7 5 0.00017 22.1 4.3 27 84-110 4-30 (34)
30 2w6b_A RHO guanine nucleotide 77.2 9.9 0.00034 23.1 6.7 42 81-122 10-51 (56)
31 1jnm_A Proto-oncogene C-JUN; B 77.0 3.2 0.00011 25.3 3.8 28 84-111 25-52 (62)
32 1gu4_A CAAT/enhancer binding p 76.9 3.1 0.0001 27.0 3.9 38 83-120 38-75 (78)
33 2hy6_A General control protein 76.6 6.8 0.00023 21.5 4.6 28 84-111 4-31 (34)
34 2dgc_A Protein (GCN4); basic d 74.8 5.8 0.0002 24.5 4.6 28 83-110 32-59 (63)
35 1jnm_A Proto-oncogene C-JUN; B 74.3 2 7E-05 26.3 2.4 31 80-110 28-58 (62)
36 4dzn_A Coiled-coil peptide CC- 73.1 8.6 0.0003 20.5 4.5 22 89-110 3-24 (33)
37 1dh3_A Transcription factor CR 73.1 6.6 0.00022 23.6 4.4 27 83-109 24-50 (55)
38 3v86_A De novo design helix; c 67.5 8.4 0.00029 19.7 3.4 22 85-106 4-25 (27)
39 3ra3_A P1C; coiled coil domain 64.6 11 0.00039 19.3 3.5 23 86-108 5-27 (28)
40 2r2v_A GCN4 leucine zipper; co 64.2 16 0.00054 20.1 4.8 28 83-110 3-30 (34)
41 1t6f_A Geminin; coiled-coil, c 63.5 17 0.00058 20.2 4.6 30 86-115 5-34 (37)
42 2j5u_A MREC protein; bacterial 61.5 4.3 0.00015 31.5 2.3 29 83-111 21-49 (255)
43 2xdj_A Uncharacterized protein 59.9 33 0.0011 22.3 6.2 32 84-115 30-61 (83)
44 2oa5_A Hypothetical protein BQ 55.9 7.4 0.00025 26.9 2.5 27 80-106 7-33 (110)
45 1fmh_A General control protein 54.7 23 0.00077 18.8 4.4 27 83-109 3-29 (33)
46 2wuj_A Septum site-determining 54.2 14 0.00048 22.2 3.3 27 83-109 29-55 (57)
47 1uii_A Geminin; human, DNA rep 53.2 45 0.0015 21.8 6.7 33 85-117 43-75 (83)
48 1nlw_A MAD protein, MAX dimeri 53.2 12 0.00043 23.9 3.2 25 84-108 50-74 (80)
49 2xdj_A Uncharacterized protein 52.8 44 0.0015 21.6 5.8 35 83-117 22-56 (83)
50 1go4_E MAD1 (mitotic arrest de 52.0 35 0.0012 23.1 5.4 28 82-109 13-40 (100)
51 2dgc_A Protein (GCN4); basic d 50.2 12 0.0004 23.0 2.6 26 80-105 36-61 (63)
52 2wt7_B Transcription factor MA 49.9 43 0.0015 22.1 5.5 32 83-114 50-81 (90)
53 3t97_C Nuclear pore glycoprote 48.5 44 0.0015 20.7 5.1 43 82-124 13-55 (64)
54 1deb_A APC protein, adenomatou 48.2 42 0.0014 20.1 6.6 30 82-111 11-40 (54)
55 2jee_A YIIU; FTSZ, septum, coi 48.1 54 0.0019 21.3 6.0 15 86-100 25-39 (81)
56 3m91_A Proteasome-associated A 47.3 42 0.0014 19.8 5.5 32 83-114 18-49 (51)
57 1nkp_B MAX protein, MYC proto- 47.2 16 0.00055 23.2 3.0 23 85-107 51-73 (83)
58 1nkp_B MAX protein, MYC proto- 46.7 29 0.00099 21.9 4.2 31 88-118 47-77 (83)
59 3r4h_A Coiled coil helix CC-TE 45.8 34 0.0012 18.3 3.9 26 83-108 4-29 (34)
60 1am9_A Srebp-1A, protein (ster 45.0 30 0.001 22.0 4.0 27 83-109 52-78 (82)
61 3w03_C DNA repair protein XRCC 44.8 30 0.001 25.8 4.5 34 83-116 147-180 (184)
62 1a93_A Coiled coil, LZ, MYC pr 43.2 34 0.0012 18.7 3.5 27 81-107 7-33 (34)
63 2jee_A YIIU; FTSZ, septum, coi 42.3 68 0.0023 20.8 6.9 17 83-99 29-45 (81)
64 2w83_C C-JUN-amino-terminal ki 41.9 68 0.0023 20.7 5.3 32 83-114 32-63 (77)
65 1nlw_A MAD protein, MAX dimeri 41.7 46 0.0016 21.2 4.5 22 84-105 57-78 (80)
66 2w6b_A RHO guanine nucleotide 41.4 58 0.002 19.7 5.0 26 85-110 7-32 (56)
67 1use_A VAsp, vasodilator-stimu 39.6 55 0.0019 19.0 5.7 19 90-108 9-28 (45)
68 3s9g_A Protein hexim1; cyclin 39.4 32 0.0011 23.3 3.6 12 84-95 47-58 (104)
69 1go4_E MAD1 (mitotic arrest de 39.3 41 0.0014 22.7 4.1 25 82-106 20-44 (100)
70 1txp_A HnRNP C, heterogeneous 39.0 43 0.0015 17.5 4.0 22 99-120 3-24 (28)
71 1wlq_A Geminin; coiled-coil; 2 38.1 82 0.0028 20.5 5.5 31 84-114 34-64 (83)
72 3w03_C DNA repair protein XRCC 37.5 91 0.0031 23.2 6.2 29 81-109 152-180 (184)
73 3a7p_A Autophagy protein 16; c 37.1 1.2E+02 0.004 22.0 6.8 18 89-106 69-86 (152)
74 4emc_A Monopolin complex subun 36.3 1.3E+02 0.0046 22.4 7.4 26 83-108 22-47 (190)
75 3okq_A BUD site selection prot 36.1 1.2E+02 0.004 21.7 7.6 45 87-131 60-108 (141)
76 2wg5_A General control protein 35.2 46 0.0016 22.3 3.9 27 83-109 9-35 (109)
77 2zxx_A Geminin; coiled-coil, c 35.1 62 0.0021 20.9 4.3 26 87-112 33-58 (79)
78 2w6a_A ARF GTPase-activating p 34.6 81 0.0028 19.4 5.4 26 83-108 29-54 (63)
79 2wvr_A Geminin; DNA replicatio 33.4 1.3E+02 0.0046 22.8 6.5 24 87-110 114-137 (209)
80 2wvr_A Geminin; DNA replicatio 33.0 1.6E+02 0.0055 22.3 7.4 42 83-124 117-161 (209)
81 1uii_A Geminin; human, DNA rep 32.7 1E+02 0.0035 20.1 5.8 31 83-113 48-78 (83)
82 2l5g_B Putative uncharacterize 32.6 72 0.0025 18.2 5.2 32 84-115 5-36 (42)
83 1gd2_E Transcription factor PA 32.3 93 0.0032 19.4 5.2 22 86-107 41-62 (70)
84 3l4f_A RHO guanine nucleotide 29.6 1E+02 0.0034 19.0 7.0 30 81-110 7-36 (61)
85 2v66_B Nuclear distribution pr 29.2 1.3E+02 0.0046 20.4 5.5 28 83-110 37-64 (111)
86 3he5_B Synzip2; heterodimeric 29.0 88 0.003 18.1 6.5 24 84-107 6-29 (52)
87 3i00_A HIP-I, huntingtin-inter 28.8 1.4E+02 0.0049 20.4 5.9 21 83-103 17-37 (120)
88 4etp_A Kinesin-like protein KA 28.0 1.2E+02 0.0041 24.8 6.0 23 86-108 8-30 (403)
89 1ez3_A Syntaxin-1A; three heli 27.2 1.3E+02 0.0046 19.6 5.8 31 84-114 8-38 (127)
90 3m9b_A Proteasome-associated A 27.2 63 0.0022 25.2 3.9 28 86-113 66-93 (251)
91 1rtm_1 Mannose-binding protein 27.1 80 0.0027 21.1 4.1 24 86-109 2-25 (149)
92 1fmh_B General control protein 27.0 76 0.0026 16.7 5.0 29 83-111 3-31 (33)
93 4dzo_A Mitotic spindle assembl 26.9 1.2E+02 0.0041 20.8 5.0 23 88-110 4-26 (123)
94 3twe_A Alpha4H; unknown functi 26.9 69 0.0024 16.2 3.5 18 92-109 5-22 (27)
95 2akf_A Coronin-1A; coiled coil 26.8 78 0.0027 16.8 4.4 26 85-110 3-28 (32)
96 1got_G GT-gamma; complex (GTP- 26.0 1.1E+02 0.0037 19.3 4.2 33 91-123 20-56 (73)
97 2w83_C C-JUN-amino-terminal ki 25.4 1.4E+02 0.0047 19.2 6.1 33 84-116 5-37 (77)
98 3a5t_A Transcription factor MA 25.1 0.25 8.6E-06 34.3 -9.1 39 82-120 66-104 (107)
99 1nkp_A C-MYC, MYC proto-oncoge 24.8 1.4E+02 0.0048 19.1 5.5 15 91-105 69-83 (88)
100 1jcd_A Major outer membrane li 24.1 1.2E+02 0.004 17.9 4.4 27 82-108 12-38 (52)
101 3kqg_A Langerin, C-type lectin 24.1 78 0.0027 21.8 3.7 13 86-98 21-33 (182)
102 1ik9_A DNA repair protein XRCC 23.9 1.7E+02 0.006 21.8 5.8 23 86-108 137-159 (213)
103 4g2k_A General control protein 23.6 1.9E+02 0.0065 20.1 6.2 23 87-109 34-56 (125)
104 2zvf_A Alanyl-tRNA synthetase; 22.8 1.2E+02 0.004 21.1 4.4 26 82-107 33-58 (171)
105 3cve_A Homer protein homolog 1 22.7 1.5E+02 0.0052 18.7 6.9 27 83-109 9-35 (72)
106 1fxk_C Protein (prefoldin); ar 22.2 1.8E+02 0.0062 19.4 6.6 37 83-119 3-39 (133)
107 3trt_A Vimentin; cytoskeleton, 22.0 1.4E+02 0.0049 18.1 4.4 21 87-107 55-75 (77)
108 3m9b_A Proteasome-associated A 21.8 1E+02 0.0034 24.1 4.1 33 85-117 58-90 (251)
109 4e61_A Protein BIM1; EB1-like 21.6 1.9E+02 0.0066 19.5 5.7 22 87-108 17-38 (106)
110 4dac_A Computationally designe 21.4 52 0.0018 16.8 1.6 22 85-106 5-26 (28)
111 3cvf_A Homer-3, homer protein 21.3 1.7E+02 0.0058 18.7 6.9 28 83-110 15-42 (79)
112 1whz_A Hypothetical protein; a 21.2 61 0.0021 19.4 2.3 29 9-37 5-35 (70)
113 1dip_A Delta-sleep-inducing pe 21.0 1.1E+02 0.0036 19.7 3.4 19 83-101 24-42 (78)
114 1v5s_A MAP/microtubule affinit 20.7 14 0.00047 25.9 -1.0 19 18-36 90-110 (126)
115 1joc_A EEA1, early endosomal a 20.6 2E+02 0.007 19.4 5.5 25 86-110 16-40 (125)
116 3viq_A SWI5-dependent recombin 20.5 1.9E+02 0.0064 19.9 5.0 25 85-109 4-28 (122)
117 2q6q_A Spindle POLE BODY compo 20.3 1.7E+02 0.0059 18.4 5.0 30 87-116 16-45 (74)
No 1
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=99.91 E-value=6.3e-26 Score=159.83 Aligned_cols=52 Identities=52% Similarity=0.847 Sum_probs=49.4
Q ss_pred CCCCCCCcCChhhHHhhhcccCceeec----------CCcceeecCCcCCCChhchHHHhhh
Q 032729 1 MLPKYFKHNNFSSFIRQLNTYGFKKTS----------PKQWEFRHDKFRRGCRHLLVEIVRK 52 (135)
Q Consensus 1 vLp~~Fk~~~f~SFvRqLn~yGF~k~~----------~~~~ef~h~~F~rg~~~ll~~IkRk 52 (135)
|||+||||+||+|||||||+|||+|+. ++.|+|+||+|+||+|+||..|+||
T Consensus 45 vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~~~~~ef~h~~F~Rg~~~LL~~IkRk 106 (106)
T 1hks_A 45 LLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106 (106)
T ss_dssp TSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCTTSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred HhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCCCCceEEECcCccCcCHHHHhhCcCC
Confidence 799999999999999999999999985 4689999999999999999999996
No 2
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.91 E-value=6.2e-26 Score=164.30 Aligned_cols=55 Identities=55% Similarity=0.898 Sum_probs=51.5
Q ss_pred CCCCCCCcCChhhHHhhhcccCceeec-----------CCcceeecCCcCCCChhchHHHhhhcCC
Q 032729 1 MLPKYFKHNNFSSFIRQLNTYGFKKTS-----------PKQWEFRHDKFRRGCRHLLVEIVRKKSD 55 (135)
Q Consensus 1 vLp~~Fk~~~f~SFvRqLn~yGF~k~~-----------~~~~ef~h~~F~rg~~~ll~~IkRk~~~ 55 (135)
|||+||||+||+|||||||+|||+|+. ++.|+|+||+|+||+|+||.+|+||++.
T Consensus 58 vLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~~~~~~~~~~~~eF~H~~F~Rg~~~LL~~IkRk~~~ 123 (125)
T 2ldu_A 58 VLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTS 123 (125)
T ss_dssp HHHHHSSCCCHHHHHHHHHHTTCEEEECSCCSSSSSCSSCCEEEECTTCBTTBGGGTTTSCCCTTS
T ss_pred HhHHhcCCCcHHHHHHHhcccCceEEeeccccccccCCCCccEEECccccCCCHHHHhhCcCCCCC
Confidence 689999999999999999999999984 3689999999999999999999999875
No 3
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=99.72 E-value=6.7e-19 Score=123.43 Aligned_cols=37 Identities=57% Similarity=1.213 Sum_probs=35.1
Q ss_pred CCCCCCCcCChhhHHhhhcccCceeec-----------CCcceeecCC
Q 032729 1 MLPKYFKHNNFSSFIRQLNTYGFKKTS-----------PKQWEFRHDK 37 (135)
Q Consensus 1 vLp~~Fk~~~f~SFvRqLn~yGF~k~~-----------~~~~ef~h~~ 37 (135)
|||+||+|+||+||+||||+|||+|+. ++.|||+||+
T Consensus 53 VLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~g~~~~~~~~~wEF~n~~ 100 (102)
T 3hts_B 53 VLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENER 100 (102)
T ss_dssp THHHHCSSCCHHHHHHHHHHTTEEECC---------CCSCCEEEEECC
T ss_pred HHHHhcCCCcHHHHHHHhhcCCceEeeccccCcccCCCcCCeEecCCC
Confidence 799999999999999999999999997 6789999996
No 4
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=91.24 E-value=0.64 Score=28.12 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 82 NHLLLMEENESLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 82 ~~~~L~~e~~~Lk~E~~~L~~el~~~k~ 109 (135)
.+..|..+++.|++||..|++|+.-=..
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~dNS~ 31 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELEDNSN 31 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHhhHH
Confidence 3567888999999999999988865443
No 5
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=91.24 E-value=0.57 Score=25.19 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~ 109 (135)
...|.+|+..|++|...|+-|++.+++
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 567888888888888888888888765
No 6
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=90.88 E-value=0.36 Score=32.24 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032729 86 LMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQYM 122 (135)
Q Consensus 86 L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~~~m 122 (135)
+..+.+.|..||..|+.+|..++.....|-.+|.++.
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p 77 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 3344445555555555555555544444444444433
No 7
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=89.86 E-value=1.3 Score=27.41 Aligned_cols=37 Identities=30% Similarity=0.243 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLS 119 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~ 119 (135)
...|.++++.|..++..|..++..++.....|-..|.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777777666666555553
No 8
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=88.80 E-value=0.75 Score=27.82 Aligned_cols=30 Identities=20% Similarity=0.076 Sum_probs=24.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 81 NNHLLLMEENESLKRERLQLQMQIAEFKAL 110 (135)
Q Consensus 81 ~~~~~L~~e~~~Lk~E~~~L~~el~~~k~~ 110 (135)
.++..|..|+..|+.++..|..+++.++..
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888888888888877654
No 9
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=87.83 E-value=1.5 Score=29.16 Aligned_cols=43 Identities=28% Similarity=0.346 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032729 81 NNHLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQYMG 123 (135)
Q Consensus 81 ~~~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~~~m~ 123 (135)
.....|..||..|+.++..|..|+..++.+...+-+-+...|+
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~~~~~~~ 85 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLLASSG 85 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHhcccc
Confidence 3478899999999999999999999999887766665554444
No 10
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=87.55 E-value=1.1 Score=24.68 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 84 LLLMEENESLKRERLQLQMQIAEFKAL 110 (135)
Q Consensus 84 ~~L~~e~~~Lk~E~~~L~~el~~~k~~ 110 (135)
..|.+.++.|-.++..|..|+.+++.+
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 457778888888888888888888764
No 11
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=85.66 E-value=3 Score=23.30 Aligned_cols=30 Identities=23% Similarity=0.221 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEI 112 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~ 112 (135)
+..|.+.++.|..++..|..++++++.+..
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 456788889999999999999999887643
No 12
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=85.22 E-value=3.5 Score=25.42 Aligned_cols=32 Identities=16% Similarity=0.098 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIKL 114 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kl 114 (135)
...|..+.+.|..+|..|..++..++.-...|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666665544333
No 13
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=84.80 E-value=2 Score=26.21 Aligned_cols=27 Identities=26% Similarity=0.209 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~ 109 (135)
...|..+|..|..++..|+.|+..+++
T Consensus 31 ~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 31 AEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555554443
No 14
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=84.32 E-value=4 Score=24.77 Aligned_cols=36 Identities=22% Similarity=0.143 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSL 118 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L 118 (135)
...|..+++.|..++..|..++..++.....|-+.|
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577888999999999999999999988776665554
No 15
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=84.18 E-value=3 Score=22.86 Aligned_cols=29 Identities=10% Similarity=0.116 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALE 111 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~ 111 (135)
+..|.+.++.|-.++..|..|+++++.+.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35677888889999999999999888653
No 16
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=84.15 E-value=2.2 Score=25.68 Aligned_cols=29 Identities=21% Similarity=0.133 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 88 EENESLKRERLQLQMQIAEFKALEIKLLD 116 (135)
Q Consensus 88 ~e~~~Lk~E~~~L~~el~~~k~~~~kll~ 116 (135)
.+++.|+.|+..|+.++..++.....+-.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777665555443
No 17
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=83.44 E-value=2.5 Score=23.38 Aligned_cols=28 Identities=14% Similarity=0.264 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKAL 110 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~ 110 (135)
+..|.+.++.|-.++..|..|+++++.+
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3567788888999999999999988765
No 18
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=83.10 E-value=3.5 Score=22.71 Aligned_cols=29 Identities=10% Similarity=0.047 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALE 111 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~ 111 (135)
+..|.+.++.|-.++..|..|+++++.+.
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45677888889999999999999888653
No 19
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=82.14 E-value=4 Score=22.50 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKAL 110 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~ 110 (135)
+..|.+.++.|-.++..|..|+.+++.+
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4567777788888888888888887764
No 20
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=81.71 E-value=3.1 Score=25.58 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=28.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 79 EHNNHLLLMEENESLKRERLQLQMQIAEFKALE 111 (135)
Q Consensus 79 ~~~~~~~L~~e~~~Lk~E~~~L~~el~~~k~~~ 111 (135)
.+.....|..+|..|..++..|+.++..++.+.
T Consensus 28 Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999999988754
No 21
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=81.65 E-value=1.7 Score=28.31 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 84 LLLMEENESLKRERLQLQMQIAEFK 108 (135)
Q Consensus 84 ~~L~~e~~~Lk~E~~~L~~el~~~k 108 (135)
..|..||..|+.++..|..|+..++
T Consensus 46 ~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 46 LELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443
No 22
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=81.60 E-value=4.1 Score=22.71 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALE 111 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~ 111 (135)
+..|.+.++.|-.++..|..|+.+++.+.
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 35678888889999999999998888754
No 23
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=80.22 E-value=3.3 Score=25.55 Aligned_cols=33 Identities=27% Similarity=0.204 Sum_probs=28.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 80 HNNHLLLMEENESLKRERLQLQMQIAEFKALEI 112 (135)
Q Consensus 80 ~~~~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~ 112 (135)
+.....|..+|..|+.++..|+.|+..++.+.-
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788999999999999999999999887653
No 24
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=79.75 E-value=2.5 Score=21.89 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032729 85 LLMEENESLKRERLQLQMQIAEF 107 (135)
Q Consensus 85 ~L~~e~~~Lk~E~~~L~~el~~~ 107 (135)
.|.+.|.+|++|...|.-|++.+
T Consensus 4 rlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHh
Confidence 45666777777777777776654
No 25
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=79.29 E-value=5.9 Score=21.67 Aligned_cols=29 Identities=17% Similarity=0.012 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALE 111 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~ 111 (135)
+..|.+.++.|-.++..|..|+++++.+.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 35678888999999999999999988653
No 26
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=79.13 E-value=2.7 Score=28.12 Aligned_cols=35 Identities=29% Similarity=0.345 Sum_probs=22.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 80 HNNHLLLMEENESLKRERLQLQMQIAEFKALEIKL 114 (135)
Q Consensus 80 ~~~~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kl 114 (135)
+.....|..|++.|+.|+..+..++..+++.++.|
T Consensus 54 E~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 54 ENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666666777777777777777766665543
No 27
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=78.20 E-value=4.9 Score=31.11 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=0.0
Q ss_pred cceeecCCcCCCChhchHHHhh
Q 032729 30 QWEFRHDKFRRGCRHLLVEIVR 51 (135)
Q Consensus 30 ~~ef~h~~F~rg~~~ll~~IkR 51 (135)
.|==.||+|--.+++||..+.-
T Consensus 38 ~yL~~~PdFf~~~~~Ll~~L~l 59 (252)
T 3e98_A 38 AYLSQHPEFFVEHDELIPELRI 59 (252)
T ss_dssp ----------------------
T ss_pred HHHHhCCHHHhhCHHHHHhCCC
Confidence 3666899999999999987764
No 28
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=77.92 E-value=2.9 Score=23.15 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEF 107 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~ 107 (135)
.....++++.|++.|..|..++..+
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 3456778888999998888887543
No 29
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=77.67 E-value=5 Score=22.10 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 84 LLLMEENESLKRERLQLQMQIAEFKAL 110 (135)
Q Consensus 84 ~~L~~e~~~Lk~E~~~L~~el~~~k~~ 110 (135)
..|.+.++.|-.++..|..|+++++.+
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 557778888888999999999988765
No 30
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=77.23 E-value=9.9 Score=23.14 Aligned_cols=42 Identities=12% Similarity=0.218 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032729 81 NNHLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQYM 122 (135)
Q Consensus 81 ~~~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~~~m 122 (135)
++.-.|.+|+..|++|+..|.+-+..-++.-+.|-..+..+.
T Consensus 10 DtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~ 51 (56)
T 2w6b_A 10 DTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVL 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446678888888888888888777765555555544444443
No 31
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=77.01 E-value=3.2 Score=25.35 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 84 LLLMEENESLKRERLQLQMQIAEFKALE 111 (135)
Q Consensus 84 ~~L~~e~~~Lk~E~~~L~~el~~~k~~~ 111 (135)
..|..+++.|..++..|..++..++...
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555444433
No 32
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=76.87 E-value=3.1 Score=27.03 Aligned_cols=38 Identities=18% Similarity=0.138 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQ 120 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~~ 120 (135)
...+....+.|..||..|+.++..++.....|-.+|.+
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788999999999999999998877666555443
No 33
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=76.65 E-value=6.8 Score=21.55 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 84 LLLMEENESLKRERLQLQMQIAEFKALE 111 (135)
Q Consensus 84 ~~L~~e~~~Lk~E~~~L~~el~~~k~~~ 111 (135)
..|.+-++.|-.++..|..++.+++.+.
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 5677888889999999999999888754
No 34
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=74.85 E-value=5.8 Score=24.50 Aligned_cols=28 Identities=25% Similarity=0.321 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKAL 110 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~ 110 (135)
...|..+++.|..+|..|..++..+++.
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888888888888887753
No 35
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=74.35 E-value=2 Score=26.27 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=25.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 80 HNNHLLLMEENESLKRERLQLQMQIAEFKAL 110 (135)
Q Consensus 80 ~~~~~~L~~e~~~Lk~E~~~L~~el~~~k~~ 110 (135)
+.....|..+|..|..++..|+.++..+++.
T Consensus 28 e~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 28 EEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999888764
No 36
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=73.12 E-value=8.6 Score=20.50 Aligned_cols=22 Identities=36% Similarity=0.345 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032729 89 ENESLKRERLQLQMQIAEFKAL 110 (135)
Q Consensus 89 e~~~Lk~E~~~L~~el~~~k~~ 110 (135)
|+..|++|...|+.|++.++-.
T Consensus 3 eiaalkqeiaalkkeiaalkfe 24 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFE 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888888777653
No 37
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=73.10 E-value=6.6 Score=23.58 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~ 109 (135)
+..|..++..|..||..|..++..++.
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777778888888888888777764
No 38
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=67.50 E-value=8.4 Score=19.68 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032729 85 LLMEENESLKRERLQLQMQIAE 106 (135)
Q Consensus 85 ~L~~e~~~Lk~E~~~L~~el~~ 106 (135)
.|.+|+-.|+.|+..|+.|+.-
T Consensus 4 qlkdevgelkgevralkdevkd 25 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKD 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhc
Confidence 3566666777777666666543
No 39
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=64.62 E-value=11 Score=19.35 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032729 86 LMEENESLKRERLQLQMQIAEFK 108 (135)
Q Consensus 86 L~~e~~~Lk~E~~~L~~el~~~k 108 (135)
|.=||+.|.+....|++.++.++
T Consensus 5 lefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhc
Confidence 44455555555555555555443
No 40
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=64.23 E-value=16 Score=20.08 Aligned_cols=28 Identities=11% Similarity=0.083 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKAL 110 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~ 110 (135)
+..|.+-++.|-.++..|..|+++++.+
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~l 30 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3557778888889999999999888764
No 41
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=63.50 E-value=17 Score=20.22 Aligned_cols=30 Identities=33% Similarity=0.359 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 86 LMEENESLKRERLQLQMQIAEFKALEIKLL 115 (135)
Q Consensus 86 L~~e~~~Lk~E~~~L~~el~~~k~~~~kll 115 (135)
...||+.|-++...-..+|+++++....|.
T Consensus 5 ~L~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 5 ALKENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 357888898888888888888888766654
No 42
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=61.49 E-value=4.3 Score=31.48 Aligned_cols=29 Identities=24% Similarity=0.149 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALE 111 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~ 111 (135)
...|.+||++|++|+..|+.++.+++++.
T Consensus 21 ~~~l~~eN~~Lk~e~~~l~~~~~~~~~l~ 49 (255)
T 2j5u_A 21 LKNTYTENQHLKERLEELAQLESEVADLK 49 (255)
T ss_dssp -----CTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677899999999999988888777653
No 43
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=59.86 E-value=33 Score=22.27 Aligned_cols=32 Identities=16% Similarity=0.112 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 84 LLLMEENESLKRERLQLQMQIAEFKALEIKLL 115 (135)
Q Consensus 84 ~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll 115 (135)
..|..|+..|+..+..+.-++.++++-+..+.
T Consensus 30 ~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y 61 (83)
T 2xdj_A 30 SDNQSDIDSLRGQIQENQYQLNQVVERQKQIL 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444445555554444443
No 44
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=55.89 E-value=7.4 Score=26.92 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=22.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 80 HNNHLLLMEENESLKRERLQLQMQIAE 106 (135)
Q Consensus 80 ~~~~~~L~~e~~~Lk~E~~~L~~el~~ 106 (135)
+.++..|..|+.+|+-||..|++.+.+
T Consensus 7 ~~t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 7 DKTYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356788999999999999999999864
No 45
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=54.65 E-value=23 Score=18.84 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~ 109 (135)
...|..|+..-..|+..|.++++++..
T Consensus 3 vaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345667777777777778888777664
No 46
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=54.15 E-value=14 Score=22.18 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~ 109 (135)
+..+.++++.|.+|+..|+.++..++.
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556677788888888888888877654
No 47
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=53.23 E-value=45 Score=21.83 Aligned_cols=33 Identities=30% Similarity=0.316 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 85 LLMEENESLKRERLQLQMQIAEFKALEIKLLDS 117 (135)
Q Consensus 85 ~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~ 117 (135)
.-.+||+.|..++..|..+++.++.....+-.+
T Consensus 43 eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 43 EALKENEKLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335788999999888888888888766655544
No 48
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=53.21 E-value=12 Score=23.94 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 84 LLLMEENESLKRERLQLQMQIAEFK 108 (135)
Q Consensus 84 ~~L~~e~~~Lk~E~~~L~~el~~~k 108 (135)
..|.+++..|..|...|+.+...++
T Consensus 50 ~~L~~~~~~l~~e~~~L~~e~~~L~ 74 (80)
T 1nlw_A 50 KKLEDSDRKAVHQIDQLQREQRHLK 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 49
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=52.76 E-value=44 Score=21.63 Aligned_cols=35 Identities=14% Similarity=0.029 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIKLLDS 117 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~ 117 (135)
...|..+++.|+.|+..|+.+++.+....+.|..-
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~r 56 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45567788888888888888888877666665543
No 50
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=52.03 E-value=35 Score=23.05 Aligned_cols=28 Identities=25% Similarity=0.184 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 82 NHLLLMEENESLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 82 ~~~~L~~e~~~Lk~E~~~L~~el~~~k~ 109 (135)
.+..|..+++.|..|+..|++++..+.-
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777777766653
No 51
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=50.21 E-value=12 Score=23.04 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=16.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 80 HNNHLLLMEENESLKRERLQLQMQIA 105 (135)
Q Consensus 80 ~~~~~~L~~e~~~Lk~E~~~L~~el~ 105 (135)
+.....|..+|..|..++..|+.++.
T Consensus 36 e~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 36 EDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456667777777777777766654
No 52
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=49.86 E-value=43 Score=22.14 Aligned_cols=32 Identities=16% Similarity=0.131 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIKL 114 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kl 114 (135)
...|..++..|+.|...|..|+.++..-.+.+
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~ 81 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSRLARERDAY 81 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777888888888888777777654443
No 53
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=48.54 E-value=44 Score=20.65 Aligned_cols=43 Identities=21% Similarity=0.166 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032729 82 NHLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQYMGN 124 (135)
Q Consensus 82 ~~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~~~m~~ 124 (135)
.+..|..++.+...+...+.++|.-+...++.|=.+|..|-+.
T Consensus 13 kI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~~ 55 (64)
T 3t97_C 13 KITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEES 55 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999899988888877655
No 54
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=48.21 E-value=42 Score=20.05 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 82 NHLLLMEENESLKRERLQLQMQIAEFKALE 111 (135)
Q Consensus 82 ~~~~L~~e~~~Lk~E~~~L~~el~~~k~~~ 111 (135)
.+..|..||..|++|...-..++.++..--
T Consensus 11 QVe~Lk~ENshLrrEL~dNS~~lskLE~et 40 (54)
T 1deb_A 11 QVEALKMENSNLRQELEDNSNHLTKLETEA 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHhhHHHHHHHHhhh
Confidence 367899999999999988888888777543
No 55
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=48.06 E-value=54 Score=21.28 Aligned_cols=15 Identities=40% Similarity=0.355 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 032729 86 LMEENESLKRERLQL 100 (135)
Q Consensus 86 L~~e~~~Lk~E~~~L 100 (135)
|..|++.||.++..|
T Consensus 25 LqmEieELKekN~~L 39 (81)
T 2jee_A 25 LQMEIEELKEKNNSL 39 (81)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 56
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=47.34 E-value=42 Score=19.84 Aligned_cols=32 Identities=16% Similarity=0.068 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIKL 114 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kl 114 (135)
...|...|++|-.-....+++|..++...++|
T Consensus 18 l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 18 IDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666677777776666554
No 57
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=47.21 E-value=16 Score=23.17 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032729 85 LLMEENESLKRERLQLQMQIAEF 107 (135)
Q Consensus 85 ~L~~e~~~Lk~E~~~L~~el~~~ 107 (135)
.|.++++.|..|...|+.+...+
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L 73 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALL 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 58
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=46.72 E-value=29 Score=21.90 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 88 EENESLKRERLQLQMQIAEFKALEIKLLDSL 118 (135)
Q Consensus 88 ~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L 118 (135)
+-+..|..++..|..++..++.....|-.-|
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666665555444443
No 59
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=45.80 E-value=34 Score=18.26 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFK 108 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k 108 (135)
...+.+|...+++|...++-|++.++
T Consensus 4 laaikqelaaikkelaaikfelaaik 29 (34)
T 3r4h_A 4 LAAIKQELAAIKKELAAIKFELAAIK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777776666654
No 60
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=45.01 E-value=30 Score=22.04 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~ 109 (135)
+..|..+++.|..|+..|+.++++.+.
T Consensus 52 I~~Lq~~~~~L~~e~~~L~~~~~~~~~ 78 (82)
T 1am9_A 52 IRFLQHSNQKLKQENLSLRTAVHKSKS 78 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 455667777777777777777766543
No 61
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=44.85 E-value=30 Score=25.82 Aligned_cols=34 Identities=6% Similarity=-0.105 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIKLLD 116 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~ 116 (135)
+..+++.+.+|+.++..|+++-.++++--+++++
T Consensus 147 id~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ 180 (184)
T 3w03_C 147 ICYCLDTIAENQAKNEHLQKENERLLRDWNDVQG 180 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666555554
No 62
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=43.23 E-value=34 Score=18.69 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=18.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 81 NNHLLLMEENESLKRERLQLQMQIAEF 107 (135)
Q Consensus 81 ~~~~~L~~e~~~Lk~E~~~L~~el~~~ 107 (135)
.+-..|..|-+.|++.+..|.+.+.++
T Consensus 7 ~dE~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 7 AEEQKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345667777777888887777777653
No 63
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=42.32 E-value=68 Score=20.80 Aligned_cols=17 Identities=35% Similarity=0.253 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQ 99 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~ 99 (135)
...|.++|..|..++..
T Consensus 29 ieELKekN~~L~~e~~e 45 (81)
T 2jee_A 29 IEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555554444444
No 64
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=41.92 E-value=68 Score=20.66 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIKL 114 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kl 114 (135)
...|...++.|-.|...|+.|+..+++...++
T Consensus 32 k~DLI~rvdELt~E~e~l~~El~s~~~~~~r~ 63 (77)
T 2w83_C 32 KNDLIAKVDELTCEKDVLQGELEAVKQAKLKL 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777776654444
No 65
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=41.67 E-value=46 Score=21.16 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032729 84 LLLMEENESLKRERLQLQMQIA 105 (135)
Q Consensus 84 ~~L~~e~~~Lk~E~~~L~~el~ 105 (135)
..|..|.+.|+.++..|++++.
T Consensus 57 ~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 57 RKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555555544
No 66
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=41.42 E-value=58 Score=19.70 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 85 LLMEENESLKRERLQLQMQIAEFKAL 110 (135)
Q Consensus 85 ~L~~e~~~Lk~E~~~L~~el~~~k~~ 110 (135)
.|.+-+-.|+-|+..|+++..+|++.
T Consensus 7 SlVDtVYaLkDqV~eL~qe~k~m~k~ 32 (56)
T 2w6b_A 7 SLVDTVYALKDEVQELRQDNKKMKKS 32 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566666666666666666543
No 67
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=39.61 E-value=55 Score=18.98 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=9.5
Q ss_pred HHHHHHHH-HHHHHHHHHHH
Q 032729 90 NESLKRER-LQLQMQIAEFK 108 (135)
Q Consensus 90 ~~~Lk~E~-~~L~~el~~~k 108 (135)
.+++|+|. ..++.|+++++
T Consensus 9 le~~KqEIL~E~RkElqK~K 28 (45)
T 1use_A 9 LQRVKQELLEEVKKELQKVK 28 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455544 34455555555
No 68
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=39.42 E-value=32 Score=23.33 Aligned_cols=12 Identities=25% Similarity=0.329 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 032729 84 LLLMEENESLKR 95 (135)
Q Consensus 84 ~~L~~e~~~Lk~ 95 (135)
+.+.+|+.+|+.
T Consensus 47 s~le~e~~rlr~ 58 (104)
T 3s9g_A 47 SRMEDENNRLRL 58 (104)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 69
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=39.25 E-value=41 Score=22.72 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 82 NHLLLMEENESLKRERLQLQMQIAE 106 (135)
Q Consensus 82 ~~~~L~~e~~~Lk~E~~~L~~el~~ 106 (135)
.+..|..|+++|++++..|..++.+
T Consensus 20 ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 20 KVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777755
No 70
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=39.02 E-value=43 Score=17.50 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032729 99 QLQMQIAEFKALEIKLLDSLSQ 120 (135)
Q Consensus 99 ~L~~el~~~k~~~~kll~~L~~ 120 (135)
.++.|+.+.++..+-|++-|..
T Consensus 3 ~IkkELtQIK~kvDsLLe~Le~ 24 (28)
T 1txp_A 3 AIKKELTQIKQKVDSLLENLEK 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777777766654
No 71
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=38.12 E-value=82 Score=20.54 Aligned_cols=31 Identities=29% Similarity=0.326 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 84 LLLMEENESLKRERLQLQMQIAEFKALEIKL 114 (135)
Q Consensus 84 ~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kl 114 (135)
..-.+||+.|..++..+..++..++.....|
T Consensus 34 ~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L 64 (83)
T 1wlq_A 34 YEALKENEKLHKEIEQKDSEIARLRKENKDL 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335788889888888888888888754443
No 72
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=37.50 E-value=91 Score=23.17 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=22.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 81 NNHLLLMEENESLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 81 ~~~~~L~~e~~~Lk~E~~~L~~el~~~k~ 109 (135)
.....|.++|++|.+|+..|+.|..++..
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~n~~l~ 180 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDWNDVQG 180 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888888888888888888776654
No 73
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=37.05 E-value=1.2e+02 Score=21.97 Aligned_cols=18 Identities=17% Similarity=0.130 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032729 89 ENESLKRERLQLQMQIAE 106 (135)
Q Consensus 89 e~~~Lk~E~~~L~~el~~ 106 (135)
.+..|+.|...|..++..
T Consensus 69 ~I~~L~~El~~l~~ki~d 86 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRR 86 (152)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 74
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=36.32 E-value=1.3e+02 Score=22.44 Aligned_cols=26 Identities=19% Similarity=0.129 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFK 108 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k 108 (135)
++.|..||..|..++....+|+.+++
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~ 47 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQ 47 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554444444444433
No 75
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=36.06 E-value=1.2e+02 Score=21.69 Aligned_cols=45 Identities=20% Similarity=0.167 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhh---hhhhhhh
Q 032729 87 MEENESLKRERLQLQMQIAEFKALEIKLLD-SLSQYMGN---FNHQNKV 131 (135)
Q Consensus 87 ~~e~~~Lk~E~~~L~~el~~~k~~~~kll~-~L~~~m~~---f~~q~~~ 131 (135)
..++..+..|...|..-+...+-.=+++-+ -|.+.+.. |++|+++
T Consensus 60 ~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~VceEQqfl~~QedL 108 (141)
T 3okq_A 60 SKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKVCEEQQFLTLQEEL 108 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433333333333 33444444 6777665
No 76
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=35.24 E-value=46 Score=22.32 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~ 109 (135)
+..|.++...|+++...++.++.++++
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 355777888888888888888877763
No 77
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=35.09 E-value=62 Score=20.91 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 87 MEENESLKRERLQLQMQIAEFKALEI 112 (135)
Q Consensus 87 ~~e~~~Lk~E~~~L~~el~~~k~~~~ 112 (135)
.+||+.|-.++..+..++..+++...
T Consensus 33 L~EN~~Lh~~ie~~~eEi~~LkeEN~ 58 (79)
T 2zxx_A 33 LKENEKLHKEIEQKDSEIARLRKENK 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888888888888876433
No 78
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=34.61 E-value=81 Score=19.41 Aligned_cols=26 Identities=35% Similarity=0.356 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFK 108 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k 108 (135)
++.|++-|..|..|...++.++..++
T Consensus 29 iQQLmkVN~~ls~Elr~mQ~~lq~LQ 54 (63)
T 2w6a_A 29 VQQLMKVNSSLSDELRKLQREIHKLQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhhHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 79
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=33.36 E-value=1.3e+02 Score=22.77 Aligned_cols=24 Identities=38% Similarity=0.426 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 87 MEENESLKRERLQLQMQIAEFKAL 110 (135)
Q Consensus 87 ~~e~~~Lk~E~~~L~~el~~~k~~ 110 (135)
.+||+.|..++..+..+++.++..
T Consensus 114 LeEN~~Lh~~ie~l~eEi~~LkeE 137 (209)
T 2wvr_A 114 LKENEKLHKEIEQKDNEIARLKKE 137 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888887777777777777653
No 80
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=33.00 E-value=1.6e+02 Score=22.33 Aligned_cols=42 Identities=17% Similarity=0.175 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhh
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEI---KLLDSLSQYMGN 124 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~---kll~~L~~~m~~ 124 (135)
-..|.++++.|..|+..|+.+...++.+.. -|.+.|..+++.
T Consensus 117 N~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~~ 161 (209)
T 2wvr_A 117 NEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGE 161 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 366788888888888888888877776533 333344444443
No 81
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=32.74 E-value=1e+02 Score=20.06 Aligned_cols=31 Identities=19% Similarity=0.136 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIK 113 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~k 113 (135)
-..|.++++.|..|+..|+.+...++.+...
T Consensus 48 N~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 48 NEKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777665443
No 82
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=32.60 E-value=72 Score=18.21 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 84 LLLMEENESLKRERLQLQMQIAEFKALEIKLL 115 (135)
Q Consensus 84 ~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll 115 (135)
..|.+.+++.-+|.....++|..++..+..|-
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888888888777666554
No 83
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=32.32 E-value=93 Score=19.41 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032729 86 LMEENESLKRERLQLQMQIAEF 107 (135)
Q Consensus 86 L~~e~~~Lk~E~~~L~~el~~~ 107 (135)
|..+++.|..|+..|+.++..+
T Consensus 41 le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 41 LKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444433
No 84
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=29.65 E-value=1e+02 Score=18.98 Aligned_cols=30 Identities=13% Similarity=0.268 Sum_probs=20.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 81 NNHLLLMEENESLKRERLQLQMQIAEFKAL 110 (135)
Q Consensus 81 ~~~~~L~~e~~~Lk~E~~~L~~el~~~k~~ 110 (135)
++.-.|.+|+..|++|+..+++=+..-++.
T Consensus 7 DtVYalkDev~eLk~e~k~~k~~le~eqra 36 (61)
T 3l4f_A 7 DTVYALKDEVQELRQDNKKMKKSLEEEQRA 36 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888887776665554443
No 85
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=29.17 E-value=1.3e+02 Score=20.45 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKAL 110 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~ 110 (135)
.+.|.+|+..|+.++..|...+..+.+.
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~ 64 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQA 64 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566777777777777777776666654
No 86
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=28.96 E-value=88 Score=18.07 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 84 LLLMEENESLKRERLQLQMQIAEF 107 (135)
Q Consensus 84 ~~L~~e~~~Lk~E~~~L~~el~~~ 107 (135)
..|...+.+|++++..|...-+.+
T Consensus 6 aylrkkiarlkkdnlqlerdeqnl 29 (52)
T 3he5_B 6 AYLRKKIARLKKDNLQLERDEQNL 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhHhhH
Confidence 556677777777777665443333
No 87
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=28.78 E-value=1.4e+02 Score=20.44 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQ 103 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~e 103 (135)
+..|..|++.|+.|...+..|
T Consensus 17 Ie~Lkreie~lk~ele~l~~E 37 (120)
T 3i00_A 17 IERLYREISGLKAQLENMKTE 37 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666555444
No 88
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=27.96 E-value=1.2e+02 Score=24.77 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032729 86 LMEENESLKRERLQLQMQIAEFK 108 (135)
Q Consensus 86 L~~e~~~Lk~E~~~L~~el~~~k 108 (135)
|.++++.|+++...|..++..++
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~ 30 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTE 30 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 89
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=27.18 E-value=1.3e+02 Score=19.64 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 84 LLLMEENESLKRERLQLQMQIAEFKALEIKL 114 (135)
Q Consensus 84 ~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kl 114 (135)
....++++.++.++..+...+..++.++..+
T Consensus 8 ~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~ 38 (127)
T 1ez3_A 8 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAI 38 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555554443
No 90
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=27.16 E-value=63 Score=25.22 Aligned_cols=28 Identities=14% Similarity=0.128 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 86 LMEENESLKRERLQLQMQIAEFKALEIK 113 (135)
Q Consensus 86 L~~e~~~Lk~E~~~L~~el~~~k~~~~k 113 (135)
|...|+.|..+...+++|+.+++...++
T Consensus 66 L~arNe~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 66 LAARNSKLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555544443
No 91
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=27.06 E-value=80 Score=21.11 Aligned_cols=24 Identities=8% Similarity=0.050 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 86 LMEENESLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 86 L~~e~~~Lk~E~~~L~~el~~~k~ 109 (135)
|.+++..|..+...|+.++..++.
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556667777777777777766665
No 92
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=26.99 E-value=76 Score=16.73 Aligned_cols=29 Identities=10% Similarity=0.112 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALE 111 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~ 111 (135)
.+.|...++.|+-.+...++.++.++..|
T Consensus 3 vqalkkrvqalkarnyaakqkvqalrhkc 31 (33)
T 1fmh_B 3 VQALKKRVQALKARNYAAKQKVQALRHKC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45667777777777777777777666544
No 93
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=26.91 E-value=1.2e+02 Score=20.81 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032729 88 EENESLKRERLQLQMQIAEFKAL 110 (135)
Q Consensus 88 ~e~~~Lk~E~~~L~~el~~~k~~ 110 (135)
+|+..|+.++..+..+..+++++
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKev 26 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEV 26 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777765
No 94
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=26.88 E-value=69 Score=16.19 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032729 92 SLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 92 ~Lk~E~~~L~~el~~~k~ 109 (135)
.|.+|...|+.++.+++.
T Consensus 5 elykeledlqerlrklrk 22 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666666655543
No 95
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=26.80 E-value=78 Score=16.76 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 85 LLMEENESLKRERLQLQMQIAEFKAL 110 (135)
Q Consensus 85 ~L~~e~~~Lk~E~~~L~~el~~~k~~ 110 (135)
.|.+++..|..=+..|+.++.++...
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777677777777666544
No 96
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=25.99 E-value=1.1e+02 Score=19.28 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhh
Q 032729 91 ESLKRERLQLQMQIA----EFKALEIKLLDSLSQYMG 123 (135)
Q Consensus 91 ~~Lk~E~~~L~~el~----~~k~~~~kll~~L~~~m~ 123 (135)
+.+++++..|+.|+. ++.+....|+.|...+..
T Consensus 20 ~~lr~~veqLr~el~~~RikVS~aa~~L~~Yce~~~~ 56 (73)
T 1got_G 20 DKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERSG 56 (73)
T ss_dssp HHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHCCchhhHHHHHHHHHHHHHhcCC
Confidence 445555555555553 334667778877776544
No 97
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=25.44 E-value=1.4e+02 Score=19.18 Aligned_cols=33 Identities=21% Similarity=0.174 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 84 LLLMEENESLKRERLQLQMQIAEFKALEIKLLD 116 (135)
Q Consensus 84 ~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~ 116 (135)
..+-.|++.|-.||..|..--..+.-+-+.|+.
T Consensus 5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~ 37 (77)
T 2w83_C 5 EFMGREVENLILENTQLLETKNALNIVKNDLIA 37 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666665555444444444444433
No 98
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=25.07 E-value=0.25 Score=34.26 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 82 NHLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLSQ 120 (135)
Q Consensus 82 ~~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~~ 120 (135)
....|..+.+.|..|+..|..|+..++..++.|..|-.+
T Consensus 66 e~~~L~~e~e~L~~En~~l~~E~~~lk~k~e~L~~~a~s 104 (107)
T 3a5t_A 66 QKAELQQEVEKLASENASMKLELDALRSKYEALQNFART 104 (107)
T ss_dssp HHTTTSSTTTTTTSTTSHHHHTTTSSSSCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777777777788887777777777766443
No 99
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=24.80 E-value=1.4e+02 Score=19.06 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 032729 91 ESLKRERLQLQMQIA 105 (135)
Q Consensus 91 ~~Lk~E~~~L~~el~ 105 (135)
+.|+.++..|+.++.
T Consensus 69 ~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 69 DLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 100
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=24.10 E-value=1.2e+02 Score=17.93 Aligned_cols=27 Identities=4% Similarity=-0.038 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 82 NHLLLMEENESLKRERLQLQMQIAEFK 108 (135)
Q Consensus 82 ~~~~L~~e~~~Lk~E~~~L~~el~~~k 108 (135)
.++.|..++..|..++..|+.++...+
T Consensus 12 ~V~~L~~kVdqLssdV~al~~~v~~ak 38 (52)
T 1jcd_A 12 DAQTANAKADQASNDANAARSDAQAAK 38 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666665444
No 101
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=24.07 E-value=78 Score=21.84 Aligned_cols=13 Identities=15% Similarity=0.036 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 032729 86 LMEENESLKRERL 98 (135)
Q Consensus 86 L~~e~~~Lk~E~~ 98 (135)
|...++.|+.+..
T Consensus 21 l~~~~~~l~~~l~ 33 (182)
T 3kqg_A 21 LNTKIRALQGSLE 33 (182)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 102
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=23.93 E-value=1.7e+02 Score=21.83 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032729 86 LMEENESLKRERLQLQMQIAEFK 108 (135)
Q Consensus 86 L~~e~~~Lk~E~~~L~~el~~~k 108 (135)
+.+++..|..++..|..++.++.
T Consensus 137 ~~~~~~~L~~e~~~l~~~~~~l~ 159 (213)
T 1ik9_A 137 NQAKNEHLQKENERLLRDWNDVQ 159 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 103
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=23.61 E-value=1.9e+02 Score=20.15 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032729 87 MEENESLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 87 ~~e~~~Lk~E~~~L~~el~~~k~ 109 (135)
..|+.++++-..+|.-.+.++-.
T Consensus 34 ~~~~~~~~~~ig~L~~~l~~~aN 56 (125)
T 4g2k_A 34 ENEIARIKKLIGNLVSRLRRLAN 56 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444444443
No 104
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=22.79 E-value=1.2e+02 Score=21.09 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 82 NHLLLMEENESLKRERLQLQMQIAEF 107 (135)
Q Consensus 82 ~~~~L~~e~~~Lk~E~~~L~~el~~~ 107 (135)
....|.+|+..|++|...|+.++...
T Consensus 33 ~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 33 TVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777776654
No 105
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=22.69 E-value=1.5e+02 Score=18.65 Aligned_cols=27 Identities=7% Similarity=0.111 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~ 109 (135)
++.+..+|..|...+..|.+++..-+.
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le~s~~ 35 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLEKSQS 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666655443
No 106
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=22.15 E-value=1.8e+02 Score=19.38 Aligned_cols=37 Identities=11% Similarity=-0.035 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKALEIKLLDSLS 119 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~L~ 119 (135)
...|.+..+.++.+...|.+++..++....++-..+.
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e 39 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEK 39 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777888888888888777766555544443
No 107
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=22.03 E-value=1.4e+02 Score=18.13 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032729 87 MEENESLKRERLQLQMQIAEF 107 (135)
Q Consensus 87 ~~e~~~Lk~E~~~L~~el~~~ 107 (135)
..|+..|++....|..+|..+
T Consensus 55 k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 55 KQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444433
No 108
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=21.80 E-value=1e+02 Score=24.08 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 85 LLMEENESLKRERLQLQMQIAEFKALEIKLLDS 117 (135)
Q Consensus 85 ~L~~e~~~Lk~E~~~L~~el~~~k~~~~kll~~ 117 (135)
.|..++..|...+..|..++...++...+|-+-
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeE 90 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREE 90 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433333
No 109
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=21.64 E-value=1.9e+02 Score=19.52 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032729 87 MEENESLKRERLQLQMQIAEFK 108 (135)
Q Consensus 87 ~~e~~~Lk~E~~~L~~el~~~k 108 (135)
..++..|..++..|+..+..+.
T Consensus 17 ~~ei~~L~~ei~eLk~~ve~lE 38 (106)
T 4e61_A 17 QETIGSLNEEIEQYKGTVSTLE 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 110
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=21.41 E-value=52 Score=16.78 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032729 85 LLMEENESLKRERLQLQMQIAE 106 (135)
Q Consensus 85 ~L~~e~~~Lk~E~~~L~~el~~ 106 (135)
.|...+.+|.+|+..|..|+++
T Consensus 5 kldanvkrlekevgklegevar 26 (28)
T 4dac_A 5 KLDANVKRLEKEVGKLEGEVAR 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT
T ss_pred eccccHHHHHHHHhhhhhhhhh
Confidence 3555666777777777666554
No 111
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=21.34 E-value=1.7e+02 Score=18.73 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQMQIAEFKAL 110 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~~el~~~k~~ 110 (135)
++.+..+|..|...+..|..++..-+..
T Consensus 15 lq~~E~rN~~Le~~v~~le~~Le~s~~~ 42 (79)
T 3cvf_A 15 VQDLETRNAELEHQLRAMERSLEEARAE 42 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666555433
No 112
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=21.18 E-value=61 Score=19.45 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=22.1
Q ss_pred CChhhHHhhhcccCceeec--CCcceeecCC
Q 032729 9 NNFSSFIRQLNTYGFKKTS--PKQWEFRHDK 37 (135)
Q Consensus 9 ~~f~SFvRqLn~yGF~k~~--~~~~ef~h~~ 37 (135)
.++..+++-|..+||..+. .+...|.||.
T Consensus 5 ~~~~elik~L~~~G~~~~r~~GSH~~~~~~~ 35 (70)
T 1whz_A 5 PRPEEVARKLRRLGFVERMAKGGHRLYTHPD 35 (70)
T ss_dssp CCHHHHHHHHHHTTCEEEEEETTEEEEECTT
T ss_pred CCHHHHHHHHHHCCCEEeCCCCCCceEecCC
Confidence 4688899999999998653 4566777654
No 113
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=20.98 E-value=1.1e+02 Score=19.69 Aligned_cols=19 Identities=37% Similarity=0.419 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032729 83 HLLLMEENESLKRERLQLQ 101 (135)
Q Consensus 83 ~~~L~~e~~~Lk~E~~~L~ 101 (135)
+..|.+.|..|..||..|+
T Consensus 24 I~EL~e~~~qLE~EN~~Lk 42 (78)
T 1dip_A 24 IRELVEKNSQLERENTLLK 42 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 114
>1v5s_A MAP/microtubule affinity-regulating kinase 3; Ka1 domain, ELKL motif, MARK3, phosphorylation, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.129.6.1
Probab=20.70 E-value=14 Score=25.95 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=14.4
Q ss_pred hcccC--ceeecCCcceeecC
Q 032729 18 LNTYG--FKKTSPKQWEFRHD 36 (135)
Q Consensus 18 Ln~yG--F~k~~~~~~ef~h~ 36 (135)
++.|| |+++..+.|.|..-
T Consensus 90 l~l~GI~fKRisGd~w~YK~l 110 (126)
T 1v5s_A 90 LSLNGVRFKRISGTSIAFKNI 110 (126)
T ss_dssp TCSCCCEEEEEESCHHHHHHH
T ss_pred CCceeEEEeeccCchhHHHHH
Confidence 56666 67888999998753
No 115
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=20.61 E-value=2e+02 Score=19.38 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 86 LMEENESLKRERLQLQMQIAEFKAL 110 (135)
Q Consensus 86 L~~e~~~Lk~E~~~L~~el~~~k~~ 110 (135)
...|++.|+.++..|+..+......
T Consensus 16 ~e~e~~~l~~~~~el~~~l~~~~~~ 40 (125)
T 1joc_A 16 GEGEIEKLQTKVLELQRKLDNTTAA 40 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777655443
No 116
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=20.53 E-value=1.9e+02 Score=19.87 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 85 LLMEENESLKRERLQLQMQIAEFKA 109 (135)
Q Consensus 85 ~L~~e~~~Lk~E~~~L~~el~~~k~ 109 (135)
.|..+...|.++...++.+|..+++
T Consensus 4 ~L~~~~~~L~~~i~~l~~~L~~lkq 28 (122)
T 3viq_A 4 QLLSRRLKLEKEVRNLQEQLITAET 28 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666553
No 117
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=20.29 E-value=1.7e+02 Score=18.42 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032729 87 MEENESLKRERLQLQMQIAEFKALEIKLLD 116 (135)
Q Consensus 87 ~~e~~~Lk~E~~~L~~el~~~k~~~~kll~ 116 (135)
.+|+++|..=...|+..+.+--.+.+||-.
T Consensus 16 q~EI~rLnvlvgslR~KLiKYtelnKKLe~ 45 (74)
T 2q6q_A 16 QNEIFELKKIAETLRSKLEKYVDITKKLED 45 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666655554444444433
Done!