BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032730
(135 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4HPA7|MD10B_ARATH Mediator of RNA polymerase II transcription subunit 10b
OS=Arabidopsis thaliana GN=MED10B PE=1 SV=1
Length = 189
Score = 194 bits (492), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 95/126 (75%), Positives = 108/126 (85%), Gaps = 2/126 (1%)
Query: 12 GGNGMVSNQAND--TTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLL 69
G NG + Q ND +T ADD K+NL+QVINS++KTLG+LHQL+LTV+SF ASQL LL
Sbjct: 13 GSNGTIRYQTNDGTSTVTVADDSKENLSQVINSIEKTLGVLHQLHLTVTSFTPASQLHLL 72
Query: 70 QRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKT 129
QRLNSLV ELDNM KLSEKCNIQ+P EVLNLIDDGKNPDEFT+DV+NSCIA+NQVTKGKT
Sbjct: 73 QRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKDVLNSCIARNQVTKGKT 132
Query: 130 DAFKVL 135
DAFK L
Sbjct: 133 DAFKDL 138
>sp|Q9FHZ2|MD10A_ARATH Mediator of RNA polymerase II transcription subunit 10a
OS=Arabidopsis thaliana GN=MED10A PE=1 SV=1
Length = 186
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 90/123 (73%), Positives = 99/123 (80%), Gaps = 3/123 (2%)
Query: 14 NGMVSNQANDTTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLN 73
NG + + N TV DD + LNQ+INS QK L LLHQL LTVSSF ASQL LLQRLN
Sbjct: 15 NGSIKTEINAIATV--DDSNEKLNQIINSNQKILELLHQLKLTVSSFTPASQLHLLQRLN 72
Query: 74 SLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVIN-SCIAKNQVTKGKTDAF 132
SLV ELDNM KLS+KCNIQVP EVLNLIDDGKNPDEFT+DV+N +CIAKNQVTKGK+DAF
Sbjct: 73 SLVMELDNMAKLSDKCNIQVPIEVLNLIDDGKNPDEFTKDVLNKNCIAKNQVTKGKSDAF 132
Query: 133 KVL 135
K L
Sbjct: 133 KGL 135
>sp|Q16G71|MED10_AEDAE Mediator of RNA polymerase II transcription subunit 10 OS=Aedes
aegypti GN=MED10 PE=3 SV=1
Length = 130
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Query: 32 PKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNI 91
P +NL N ++ + + Q+ + VS F Q L Q++ SLV+ L + KL + ++
Sbjct: 4 PLENLE---NHLEMFIENVRQIRIIVSDFQPQGQNVLNQKIQSLVTGLQEIDKLKNQVDV 60
Query: 92 QVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFK 133
VP EV + ID G+NP +T+D I+ + KN+ KGK D+++
Sbjct: 61 NVPLEVFDYIDQGRNPQLYTKDCIDKALTKNEEVKGKIDSYR 102
>sp|Q7Q5R5|MED10_ANOGA Mediator of RNA polymerase II transcription subunit 10 OS=Anopheles
gambiae GN=MED10 PE=3 SV=2
Length = 130
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Query: 32 PKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNI 91
P +NL N ++ + + Q+ + VS F Q L Q++ SLV+ L + KL + ++
Sbjct: 4 PLENLE---NHLEMFIENVRQIRIIVSDFQPQGQNVLNQKIQSLVTGLQEIDKLKNQIDV 60
Query: 92 QVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFK 133
VP EV + ID G+NP +T+D I+ + KN+ KGK D+++
Sbjct: 61 NVPLEVFDYIDQGRNPQLYTKDCIDKALTKNEEVKGKIDSYR 102
>sp|Q9CXU0|MED10_MOUSE Mediator of RNA polymerase II transcription subunit 10 OS=Mus
musculus GN=Med10 PE=1 SV=1
Length = 135
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 34 QNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQ 92
+ + + ++K + + QL + VS F +SQ L Q+LN +V+ L ++ K ++ + I
Sbjct: 3 EKFDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLSQKLNFIVTGLQDIDKCRQQLHDIT 62
Query: 93 VPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFK 133
VP EV ID G+NP +T++ + +AKN+ KGK D K
Sbjct: 63 VPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103
>sp|Q6DJ25|MED10_XENTR Mediator of RNA polymerase II transcription subunit 10 OS=Xenopus
tropicalis GN=med10 PE=2 SV=1
Length = 135
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 41 NSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPTEVLN 99
++K + + QL + VS F +SQ L Q+LN LV+ L ++ K ++ + I VP EV +
Sbjct: 10 EHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFLVTGLQDIDKCRQQLHDITVPLEVFD 69
Query: 100 LIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFK 133
ID G+NP +T++ + +AKN+ KGK D K
Sbjct: 70 YIDQGRNPQLYTKECLERALAKNEQVKGKIDTLK 103
>sp|Q6IP67|MED10_XENLA Mediator of RNA polymerase II transcription subunit 10 OS=Xenopus
laevis GN=med10 PE=2 SV=1
Length = 135
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Query: 34 QNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQ 92
+ + + + ++K + + QL + VS F +SQ L Q+LN LV L ++ K ++ + I
Sbjct: 3 EKFDNLEDHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFLVRGLQDIDKCRQQLHDIT 62
Query: 93 VPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFK 133
VP EV + ID G+NP +T++ + +AKN+ KGK D K
Sbjct: 63 VPLEVFDYIDQGRNPQLYTKECLERALAKNEQVKGKIDTLK 103
>sp|Q4R6W4|MED10_MACFA Mediator of RNA polymerase II transcription subunit 10 OS=Macaca
fascicularis GN=MED10 PE=2 SV=1
Length = 135
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 34 QNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQ 92
+ + + ++K + + QL + VS F +SQ L Q+LN +V+ L ++ K ++ + I
Sbjct: 3 EKFDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHDIT 62
Query: 93 VPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFK 133
VP EV ID G+NP +T++ + +AKN+ KGK D K
Sbjct: 63 VPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103
>sp|Q5R6P5|MED10_PONAB Mediator of RNA polymerase II transcription subunit 10 OS=Pongo
abelii GN=MED10 PE=2 SV=1
Length = 135
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 34 QNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQ 92
+ + + ++K + + QL + VS F +SQ L Q+LN +V+ L ++ K ++ + I
Sbjct: 3 EKFDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHDIT 62
Query: 93 VPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFK 133
VP EV ID G+NP +T++ + +AKN+ KGK D K
Sbjct: 63 VPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103
>sp|Q9BTT4|MED10_HUMAN Mediator of RNA polymerase II transcription subunit 10 OS=Homo
sapiens GN=MED10 PE=1 SV=1
Length = 135
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 34 QNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQ 92
+ + + ++K + + QL + VS F +SQ L Q+LN +V+ L ++ K ++ + I
Sbjct: 3 EKFDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHDIT 62
Query: 93 VPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFK 133
VP EV ID G+NP +T++ + +AKN+ KGK D K
Sbjct: 63 VPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103
>sp|Q3ZCF2|MED10_BOVIN Mediator of RNA polymerase II transcription subunit 10 OS=Bos
taurus GN=MED10 PE=2 SV=1
Length = 135
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 34 QNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQ 92
+ + + ++K + + QL + VS F +SQ L Q+LN +V+ L ++ K ++ + I
Sbjct: 3 EKFDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHDIT 62
Query: 93 VPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFK 133
VP EV ID G+NP +T++ + +AKN+ KGK D K
Sbjct: 63 VPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103
>sp|Q0VIA1|MED10_DANRE Mediator of RNA polymerase II transcription subunit 10 OS=Danio
rerio GN=med10 PE=2 SV=1
Length = 134
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 41 NSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPTEVLN 99
++K + + QL + VS F +SQ L Q+LN +++ L ++ K ++ + I VP EV
Sbjct: 10 EHLEKFVENIRQLGIIVSDFQPSSQTGLNQKLNFMITGLQDIEKCRQQLHDINVPLEVFE 69
Query: 100 LIDDGKNPDEFTRDVINSCIAKNQVTKGKTD 130
ID G+NP +T++ + +AKN+ KGK D
Sbjct: 70 YIDQGRNPQLYTKECLERALAKNEQVKGKID 100
>sp|Q6C5P0|MED10_YARLI Mediator of RNA polymerase II transcription subunit 10 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=NUT2 PE=3 SV=1
Length = 143
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 62/108 (57%), Gaps = 7/108 (6%)
Query: 29 ADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQ--LPLLQRLNSLVSELDNMVKLS 86
A+ +Q L N +++T+ L ++ L V + + L++++++LV E + ++
Sbjct: 2 AEAARQELE---NQLRQTIETLVEISLLVHDTTGSQENKEGLIEQMDTLVKEFQRLKEI- 57
Query: 87 EKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKV 134
KC+ Q+P +V++ ID G+NPD +TR+ + + +NQ GK D + V
Sbjct: 58 -KCDKQIPIDVIDYIDQGRNPDVYTREFVELLLKQNQFIHGKMDIYTV 104
>sp|Q9GYU7|MED10_DROME Mediator of RNA polymerase II transcription subunit 10
OS=Drosophila melanogaster GN=MED10 PE=1 SV=1
Length = 133
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 50 LHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKL-SEKCNIQVPTEVL-NLIDDGKNP 107
+ Q+ + VS F Q L Q++NSLV+ L + KL S+ ++ VP EV + ID KNP
Sbjct: 19 VRQIRIIVSDFQPQGQNVLNQKINSLVTGLQEIDKLRSQVQDVYVPFEVFFDYIDQDKNP 78
Query: 108 DEFTRDVINSCIAKNQVTKGKTDAFK 133
+T+D + +AKN+ KGK + K
Sbjct: 79 QLYTKDCVEKALAKNEEVKGKIEGLK 104
>sp|Q54GE5|MED10_DICDI Putative mediator of RNA polymerase II transcription subunit 10
OS=Dictyostelium discoideum GN=med10 PE=3 SV=1
Length = 219
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 39 VINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPTEV 97
++ +V++ + L + + V F SQ L +LN +++ + + N +++P E+
Sbjct: 54 LLQTVEELVEELRRSLIVVEEFQTPSQQLLFDKLNKIINLYEKIESNRHIVNDVEIPLEI 113
Query: 98 LNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFK 133
+ID KNPD + ++ + +C++ N+ TKGK ++ K
Sbjct: 114 FRVIDQSKNPDLYVKETLQNCLSANEKTKGKIESIK 149
>sp|A3LPQ8|MED10_PICST Mediator of RNA polymerase II transcription subunit 10
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=NUT2 PE=3 SV=2
Length = 146
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 64 SQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQ 123
S L + N ++S+L + +P +V++ I+DG+NPD +TR+ I N
Sbjct: 45 SHTALTHKTNQVISQLSGLTSSPFTHQFPIPVDVISYIEDGRNPDIYTREFIEVTAKSNA 104
Query: 124 VTKGKTDAFKVL 135
KGK AF L
Sbjct: 105 RLKGKMKAFARL 116
>sp|Q4PDA7|MED10_USTMA Mediator of RNA polymerase II transcription subunit 10 OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=NUT2 PE=3 SV=1
Length = 197
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 43 VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLV---SELDNMVKLSEKCNIQVPTEVLN 99
V+ + LL+QL + + SQ + ++N + + LD + ++ +P +VL
Sbjct: 76 VRSVVDLLYQLAVCSADVQEGSQHLVANKVNECIQALAALDATKDELHRAHMMIPQDVLE 135
Query: 100 LIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFK 133
++D GKNPD TR+ +N ++NQ + G+ A +
Sbjct: 136 MLDTGKNPDIHTRNFVNRLASENQYSYGQHRAVE 169
>sp|Q758M1|MED10_ASHGO Mediator of RNA polymerase II transcription subunit 10 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=NUT2 PE=3 SV=2
Length = 151
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 86 SEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKVL 135
S+ N+ +P EVL I+DG+NPD +TR+ + + NQ + K A K L
Sbjct: 70 SQLRNMNIPLEVLQYIEDGRNPDVYTREFVEAIRRSNQYQRAKMHALKKL 119
>sp|Q6BWK1|MED10_DEBHA Mediator of RNA polymerase II transcription subunit 10
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=NUT2 PE=3 SV=1
Length = 147
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 64 SQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQ 123
S L + N ++S+L ++ +P +V++ I+DG+NPD +TR+ + N
Sbjct: 45 SHTALTHKTNQVISQLSSLTDSGFTHQYPIPVDVISYIEDGRNPDVYTREFVEVTAKSNA 104
Query: 124 VTKGKTDAFKVL 135
KGK F+ L
Sbjct: 105 RLKGKMLGFQKL 116
>sp|Q06213|MED10_YEAST Mediator of RNA polymerase II transcription subunit 10
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NUT2 PE=1 SV=1
Length = 157
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 72 LNSLVSELDNMVKLSEKCN--------IQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQ 123
+ +L +D + KL+ + N + +P EV+ I+DG+NPD +TR+ + + NQ
Sbjct: 50 ITNLQRNVDRLYKLNVRSNDPQSSLSKVDIPLEVVQYIEDGRNPDIYTREFVEAIRRSNQ 109
Query: 124 VTKGKTDAFKVL 135
+GK K L
Sbjct: 110 YQRGKMHGLKQL 121
>sp|Q1E0Q7|MED10_COCIM Mediator of RNA polymerase II transcription subunit 10
OS=Coccidioides immitis (strain RS) GN=NUT2 PE=3 SV=3
Length = 163
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 90 NIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAF 132
+IQ+P E+++ +D +NPD +TR+ + NQ KGK +AF
Sbjct: 82 SIQLPPEIIDYVDAARNPDIYTREFVELVQKSNQELKGKMEAF 124
>sp|Q0U8U9|MED10_PHANO Mediator of RNA polymerase II transcription subunit 10
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=NUT2 PE=3 SV=1
Length = 133
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 42/74 (56%)
Query: 62 AASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAK 121
+ +Q + + + SL+ L + + + ++ +P E++ ++ +NPD + R+ + +
Sbjct: 21 SPTQEAMKREIQSLIQNLVKLSRTAPAIHVLIPPEIVMYVEGSRNPDIYNREFVETVQRM 80
Query: 122 NQVTKGKTDAFKVL 135
NQ+ KG+++A + L
Sbjct: 81 NQMLKGRSEALQAL 94
>sp|A1CR70|MED10_ASPCL Mediator of RNA polymerase II transcription subunit 10
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=nut2 PE=3 SV=1
Length = 167
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 90 NIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAF 132
+IQ+P E+++ +D +NPD +TR+ + NQ KGK +AF
Sbjct: 90 SIQLPPEIIDYVDAARNPDIYTREFVELVQRGNQDLKGKKEAF 132
>sp|Q4WJH6|MED10_ASPFU Mediator of RNA polymerase II transcription subunit 10
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=nut2 PE=3 SV=1
Length = 159
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 90 NIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAF 132
+IQ+P E+++ +D +NPD +TR+ + NQ KGK +AF
Sbjct: 79 DIQLPPEIIDYVDAARNPDIYTREFVELVQRGNQDLKGKKEAF 121
>sp|Q5A3K2|MED10_CANAL Mediator of RNA polymerase II transcription subunit 10 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=NUT2 PE=3
SV=1
Length = 170
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 68 LLQRLNSLVSELDNMVKLSEKCN--------IQVPTEVLNLIDDGKNPDEFTRDVINSCI 119
L+ +LN L+S+L + N +P +V++ I+DG+NPD +TR+ I
Sbjct: 49 LMNKLNQLISQLSQTSTTANDPNDANTNLKQFLIPIDVISYIEDGRNPDIYTREFIEVNA 108
Query: 120 AKNQVTKGKTDAFKVL 135
N KGK FK L
Sbjct: 109 KSNARLKGKMLGFKKL 124
>sp|A1D434|MED10_NEOFI Mediator of RNA polymerase II transcription subunit 10
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=nut2 PE=3 SV=1
Length = 167
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 90 NIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAF 132
+IQ+P E+++ +D +NPD +TR+ + NQ KGK +AF
Sbjct: 87 DIQLPPEIIDYVDAARNPDIYTREFVELVQRGNQDLKGKKEAF 129
>sp|Q6FQ75|MED10_CANGA Mediator of RNA polymerase II transcription subunit 10 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=NUT2 PE=3 SV=1
Length = 199
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 79 LDNMVKLSEKCN--------IQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTD 130
+D + KL++ N + VP EV+ I+DG+NPD +TR+ + + NQ + K
Sbjct: 60 VDRIFKLNQTSNDPQSALKDVNVPLEVVQYIEDGRNPDIYTREFVEAIRRSNQYQRAKMH 119
Query: 131 AFKVL 135
+L
Sbjct: 120 GMGML 124
>sp|P87310|MED10_SCHPO Mediator of RNA polymerase II transcription subunit 10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=med10 PE=1 SV=2
Length = 144
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 30 DDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLP---LLQRLNSLVSELDNMVKLS 86
DD + + + ++ T + L L V +N P + + L++L+ +L ++ +S
Sbjct: 5 DDMTDEMKSLASRLEDTTQAFYDLALIV--YNLEDTTPSDAIPESLDTLIRDLKSLPDIS 62
Query: 87 EKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFK 133
K N +P +VL I+ G+NPD + R NQ GK A +
Sbjct: 63 RKVNNLIPQDVLEYIEQGRNPDVYARQFSELVQKDNQYVNGKLYAIE 109
>sp|Q7RXK7|MED10_NEUCR Mediator of RNA polymerase II transcription subunit 10
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=nut-2 PE=3 SV=1
Length = 253
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 90 NIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFK 133
N +P ++ +++G+NPD +TR+ I NQ+ +GK AF+
Sbjct: 138 NPGIPIPLITYVENGRNPDVYTREFIELVRRSNQLMRGKMHAFR 181
>sp|Q0CTF3|MED10_ASPTN Mediator of RNA polymerase II transcription subunit 10
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=nut2 PE=3 SV=1
Length = 155
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 90 NIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAF 132
I++P E+++ +D +NPD +TR+ + NQ KGK +AF
Sbjct: 78 TIELPPEIIDYVDAARNPDIYTREFVELVQRGNQDLKGKKEAF 120
>sp|Q6CVN3|MED10_KLULA Mediator of RNA polymerase II transcription subunit 10
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=NUT2 PE=3
SV=1
Length = 161
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 86 SEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGK 128
S+ N VP +VL I+DG+NPD +TR+ + + NQ + K
Sbjct: 70 SQLQNFLVPLDVLQYIEDGRNPDVYTREFVEAIRRSNQYQRAK 112
>sp|Q5B5I6|MED10_EMENI Mediator of RNA polymerase II transcription subunit 10
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=nut2 PE=3 SV=2
Length = 165
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 90 NIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAF 132
+I +P E+++ +D +NPD +TR+ + NQ KGK +AF
Sbjct: 83 SIALPPEIIDYVDAARNPDIYTREFVELVQRGNQDLKGKKEAF 125
>sp|Q2H8S0|MED10_CHAGB Mediator of RNA polymerase II transcription subunit 10
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=NUT2 PE=3 SV=1
Length = 167
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 10/108 (9%)
Query: 35 NLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKL--------- 85
+L V + ++ + L Q+ + VS+++AA + P L + LD +
Sbjct: 7 DLQNVQDDIKNVIQDLFQVLVQVSNYDAAGR-PTRDVLAQDIQTLDKTLHTLHTNAQHLP 65
Query: 86 SEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFK 133
+ + +P ++ +++G+NPD +TR+ NQ+ +GK AF+
Sbjct: 66 TPTADKPIPEPLIQYVENGRNPDIYTREFAELVRRMNQLARGKMHAFR 113
>sp|P45966|MED10_CAEEL Mediator of RNA polymerase II transcription subunit 10
OS=Caenorhabditis elegans GN=mdt-10 PE=3 SV=1
Length = 173
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 57 VSSFNAASQLPLLQRLNSLVSELDNMVKLS-EKCNIQVPTEVLNLIDDGKNPDEFTRDVI 115
S+F Q L R+ +LV L ++ ++ + +VP ++L +DDGKNP +++ +
Sbjct: 65 ASNFQTKYQDALNGRIYTLVRGLQDLDRMKGTFSDKKVPLDLLPYLDDGKNPCLYSKHCM 124
Query: 116 NSCIAKNQVTKGKTDAFK 133
+ KN+ GK + +K
Sbjct: 125 EKTLEKNKAVNGKIEIYK 142
>sp|Q61Z20|MED10_CAEBR Mediator of RNA polymerase II transcription subunit 10
OS=Caenorhabditis briggsae GN=mdt-10 PE=3 SV=1
Length = 173
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 57 VSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQ-VPTEVLNLIDDGKNPDEFTRDVI 115
S+F Q L R+ +L+ L ++ ++ + + VP ++L +DDGKNP +++ +
Sbjct: 69 ASNFQTKYQDALNGRIYTLIRGLQDLDRMKGTFSDKNVPLDILPYLDDGKNPLLYSKHCM 128
Query: 116 NSCIAKNQVTKGKTDAFK 133
+ KN+ GK + +K
Sbjct: 129 EKTLEKNKAVNGKIEMYK 146
>sp|Q1RJZ5|SYM_RICBR Methionine--tRNA ligase OS=Rickettsia bellii (strain RML369-C)
GN=metG PE=3 SV=1
Length = 509
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 33 KQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQ 92
K N +V Q + +++L L ++ N+A Q LL + LDN++ L+E+ NI
Sbjct: 364 KNNDGKVPAITQDAINKIYELPLLKTAINSAKQNILLMEKTEINKILDNIINLAEEANIY 423
Query: 93 VPTE 96
+ +E
Sbjct: 424 IDSE 427
>sp|Q9FUJ2|CKX4_ARATH Cytokinin dehydrogenase 4 OS=Arabidopsis thaliana GN=CKX4 PE=1 SV=2
Length = 524
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 36 LNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPT 95
++QVI+++ +TLG F +P LN + +E D KL +VP
Sbjct: 336 IDQVIDTLSRTLGF-------APGFMFVQDVPYFDFLNRVRNEED---KLRSLGLWEVPH 385
Query: 96 EVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKT 129
LN+ G +F VIN + T G T
Sbjct: 386 PWLNIFVPGSRIQDFHDGVINGLLLNQTSTSGVT 419
>sp|B1M1U6|RLMN_METRJ Dual-specificity RNA methyltransferase RlmN OS=Methylobacterium
radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831)
GN=rlmN PE=3 SV=2
Length = 424
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 8 SRASGGNGMVSNQANDTTTVAADDPKQNLNQVINSV-----QKTLGLLHQLYLTVSSFNA 62
SR +GG+G V + + +P NL+ V+++V Q+ LGL + +TVS+
Sbjct: 195 SRDAGGSGEVGRLVTNIVFMGMGEPLYNLDAVVDAVGVMSDQEGLGLSRR-RITVSTSGV 253
Query: 63 ASQLPLL-QRLNSLVS 77
Q+P L ++ N++++
Sbjct: 254 VPQIPRLGEQANAMLA 269
>sp|P36312|POL1_CPSMV RNA1 polyprotein OS=Cowpea severe mosaic virus (strain DG) PE=3
SV=1
Length = 1858
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 68 LLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRD-VINSCIAKNQV 124
LL++ N +V M+K + N+ + T++ +L+D K +F D VI S + +QV
Sbjct: 746 LLEKTNKMVLAAYKMIKYHKDTNLVIKTQLADLVDPTKYTADFQFDGVIGSPLFSSQV 803
>sp|Q9ZJF9|DPO3A_HELPJ DNA polymerase III subunit alpha OS=Helicobacter pylori (strain
J99) GN=dnaE PE=3 SV=1
Length = 1211
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 22 NDTTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDN 81
NDT +D K + ++ KTL +L +V F S + + + L+N
Sbjct: 215 NDTHYTMPNDAKAQEVAMCVAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALEN 274
Query: 82 MVKLSEKCNIQVPTEVLNLIDDGKNP 107
++++KC +++ +L DD KNP
Sbjct: 275 TQEIADKCVLEI-----DLKDDKKNP 295
>sp|P56157|DPO3A_HELPY DNA polymerase III subunit alpha OS=Helicobacter pylori (strain
ATCC 700392 / 26695) GN=dnaE PE=3 SV=1
Length = 1211
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 22 NDTTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDN 81
NDT +D K + ++ KTL +L +V F S + + + L+N
Sbjct: 215 NDTHYTMPNDAKAQEVAMCVAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALEN 274
Query: 82 MVKLSEKCNIQVPTEVLNLIDDGKNP 107
++++KC +++ +L DD KNP
Sbjct: 275 TQEIADKCVLEI-----DLKDDKKNP 295
>sp|Q66HB6|CAGE1_RAT Cancer-associated gene 1 protein homolog OS=Rattus norvegicus
GN=Cage1 PE=2 SV=1
Length = 847
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 32 PKQNLNQVINS--VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLS 86
PK+ L +V+ Q T G L+L SS +LP ++R + L S L +++ L+
Sbjct: 575 PKEKLEEVVEPDVTQDTKGTHCNLFLNCSSCKENPELPSMKRTSPLTSRLHSLLALT 631
>sp|Q96T49|PP16B_HUMAN Protein phosphatase 1 regulatory inhibitor subunit 16B OS=Homo
sapiens GN=PPP1R16B PE=1 SV=1
Length = 567
Score = 29.3 bits (64), Expect = 8.6, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 81 NMVKLSEKCNIQVPTEVLNLIDDGKNP-----DEFTRDVINSCIAKNQVTKGKTDAFKV 134
N+VK+ +Q ++L + DG P DE T DVI +C+A +T+ K + +V
Sbjct: 148 NLVKIL----VQYGADLLAVNSDGNMPYDLCEDEPTLDVIETCMAYQGITQEKINEMRV 202
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,083,922
Number of Sequences: 539616
Number of extensions: 1656543
Number of successful extensions: 4284
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 4234
Number of HSP's gapped (non-prelim): 81
length of query: 135
length of database: 191,569,459
effective HSP length: 100
effective length of query: 35
effective length of database: 137,607,859
effective search space: 4816275065
effective search space used: 4816275065
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)