Query 032730
Match_columns 135
No_of_seqs 116 out of 129
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 08:02:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032730.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032730hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vcs_A Vesicle transport throu 91.0 1.5 5.2E-05 30.3 8.1 57 28-84 32-88 (102)
2 2qyw_A Vesicle transport throu 86.4 1.3 4.4E-05 30.8 5.1 56 29-84 44-99 (102)
3 3cz6_A DNA-binding protein RAP 79.9 4.6 0.00016 31.0 6.2 64 55-122 53-129 (168)
4 3onj_A T-snare VTI1; helix, HA 79.8 2.4 8.1E-05 29.1 4.2 57 28-84 28-87 (97)
5 2p6v_A Transcription initiatio 62.9 21 0.0007 25.8 6.0 47 29-81 9-55 (114)
6 3opc_A Uncharacterized protein 62.4 27 0.00092 24.8 6.7 91 31-123 8-109 (154)
7 2d9d_A BAG family molecular ch 60.1 15 0.00051 25.4 4.6 38 45-82 14-53 (89)
8 3qwg_A ESX-1 secretion-associa 55.6 27 0.00093 24.3 5.6 10 64-73 26-35 (123)
9 3b5n_D Protein transport prote 45.6 35 0.0012 21.6 4.4 49 30-79 2-50 (64)
10 4abx_A DNA repair protein RECN 43.2 93 0.0032 22.6 7.1 33 70-103 122-154 (175)
11 3r1f_A ESX-1 secretion-associa 40.1 80 0.0027 22.1 6.1 10 64-73 28-37 (135)
12 1gqo_A Dehydroquinase; dehydra 36.6 38 0.0013 25.1 3.9 28 49-76 37-64 (143)
13 1xou_A ESPA; coiled coil, heli 35.5 7.9 0.00027 30.2 0.0 36 68-106 80-116 (192)
14 3fst_A 5,10-methylenetetrahydr 35.0 27 0.00091 28.3 3.1 30 80-109 218-248 (304)
15 1h05_A 3-dehydroquinate dehydr 34.4 41 0.0014 25.1 3.8 29 49-77 39-67 (146)
16 3pwx_A Putative flagellar HOOK 34.1 1.3E+02 0.0043 23.1 6.8 49 38-86 42-92 (239)
17 2uyg_A 3-dehydroquinate dehydr 34.0 43 0.0015 25.0 3.9 27 49-75 36-62 (149)
18 1uqr_A 3-dehydroquinate dehydr 33.7 42 0.0014 25.2 3.8 27 49-75 38-64 (154)
19 2wus_R RODZ, putative uncharac 33.6 89 0.003 21.1 5.3 29 91-119 30-62 (112)
20 3vyw_A MNMC2; tRNA wobble urid 33.6 15 0.0005 30.2 1.3 17 104-120 198-214 (308)
21 4gwp_C Mediator of RNA polymer 33.1 74 0.0025 27.4 5.6 49 28-83 32-80 (407)
22 1p68_A De novo designed protei 32.7 68 0.0023 22.0 4.4 22 63-84 52-73 (102)
23 1gtz_A 3-dehydroquinate dehydr 32.6 42 0.0014 25.3 3.6 29 49-77 43-71 (156)
24 1io1_A Phase 1 flagellin; beta 30.2 78 0.0027 26.4 5.3 49 37-85 26-76 (398)
25 3lwz_A 3-dehydroquinate dehydr 29.8 52 0.0018 24.7 3.7 27 49-75 44-70 (153)
26 3u80_A 3-dehydroquinate dehydr 29.4 53 0.0018 24.5 3.7 28 49-76 41-68 (151)
27 1ygm_A Hypothetical protein BS 29.0 60 0.002 23.1 3.7 67 28-94 33-117 (118)
28 4h63_H Mediator of RNA polymer 28.4 1.1E+02 0.0038 23.4 5.5 24 28-51 12-35 (200)
29 1fxk_C Protein (prefoldin); ar 28.1 1.2E+02 0.0041 20.8 5.2 28 67-94 26-55 (133)
30 1l4a_D S-SNAP25 fusion protein 27.3 1.3E+02 0.0044 19.9 5.1 28 29-56 21-48 (87)
31 2clb_A DPS-like protein; DI-ir 26.8 1.7E+02 0.0058 21.4 6.2 56 29-85 110-166 (188)
32 3n8k_A 3-dehydroquinate dehydr 26.7 64 0.0022 24.7 3.8 28 49-76 65-92 (172)
33 2x96_A Angiotensin converting 25.6 1.4E+02 0.0046 26.3 6.2 44 66-109 94-145 (598)
34 2d4x_A Flagellar HOOK-associat 25.5 1.2E+02 0.0042 22.8 5.3 48 39-86 41-90 (248)
35 1sf8_A Chaperone protein HTPG; 25.3 1.1E+02 0.0037 21.7 4.7 35 43-77 91-125 (126)
36 3p8c_D Wiskott-aldrich syndrom 24.8 2.8E+02 0.0095 22.5 9.4 32 92-123 131-170 (279)
37 3kxe_C Antitoxin protein PARD- 24.6 80 0.0027 21.1 3.6 37 86-122 3-45 (88)
38 2qy6_A UPF0209 protein YFCK; s 24.3 24 0.00083 27.5 1.0 18 104-121 185-202 (257)
39 2ofy_A Putative XRE-family tra 24.1 1.3E+02 0.0043 18.3 4.4 23 93-115 39-63 (86)
40 2c5k_T Syntaxin TLG1, T-snare 24.0 1.7E+02 0.0058 19.7 7.1 31 30-60 35-65 (95)
41 2bnk_A Early protein GP16.7; D 23.2 61 0.0021 21.0 2.6 43 87-134 17-60 (67)
42 3apt_A Methylenetetrahydrofola 22.7 42 0.0014 27.0 2.2 29 81-109 216-245 (310)
43 2fup_A Hypothetical protein PA 22.4 1.9E+02 0.0067 19.8 6.9 92 32-123 8-110 (157)
44 2c4w_A 3-dehydroquinate dehydr 22.0 70 0.0024 24.5 3.2 29 49-77 46-76 (176)
45 1wrd_A TOM1, target of MYB pro 21.7 1.9E+02 0.0066 19.5 8.6 60 35-108 10-70 (103)
46 3k8w_A Flagellin homolog; flag 21.1 1.3E+02 0.0044 25.0 4.9 48 39-86 61-110 (326)
47 3v47_C Flagellin; innate immun 20.5 1E+02 0.0035 26.4 4.3 50 37-86 38-89 (425)
48 3swy_A Cyclic nucleotide-gated 20.5 82 0.0028 19.0 2.7 39 36-75 3-42 (46)
49 3u0h_A Xylose isomerase domain 20.4 1.4E+02 0.0049 21.7 4.6 59 35-93 78-138 (281)
50 2kel_A SVTR protein, uncharact 20.1 45 0.0015 20.5 1.5 37 85-121 12-53 (56)
No 1
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=90.99 E-value=1.5 Score=30.34 Aligned_cols=57 Identities=23% Similarity=0.283 Sum_probs=51.0
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHhhhhccccCCCchhHHHHHHHHHHHHHHHHHh
Q 032730 28 AADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVK 84 (135)
Q Consensus 28 ~~~~~~~~L~~~iesl~~~l~~L~ql~i~Vs~f~~~sq~~L~~kin~LV~~L~~L~~ 84 (135)
..+..+..|.++=..|++.-+.|.||.+-|.+..++.+..+..||..+=+.|.+|.+
T Consensus 32 ~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~ 88 (102)
T 1vcs_A 32 PPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLET 88 (102)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888889999889999999999999888899999999999999998865
No 2
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=86.38 E-value=1.3 Score=30.76 Aligned_cols=56 Identities=11% Similarity=0.175 Sum_probs=47.7
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhhhccccCCCchhHHHHHHHHHHHHHHHHHh
Q 032730 29 ADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVK 84 (135)
Q Consensus 29 ~~~~~~~L~~~iesl~~~l~~L~ql~i~Vs~f~~~sq~~L~~kin~LV~~L~~L~~ 84 (135)
.+..+..|.++=..|++.-+.|.||.+-|.+..++.+..+..||..+=+.|.+|.+
T Consensus 44 ~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~ 99 (102)
T 2qyw_A 44 TEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHR 99 (102)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36667778887788888888999999999999888888999999999999988764
No 3
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=79.87 E-value=4.6 Score=31.02 Aligned_cols=64 Identities=20% Similarity=0.320 Sum_probs=44.7
Q ss_pred hhccccCCCchhHHHHHH-------HHHHHHHHHHHhhhhhcCCCC-cHHHHHhhhcCCCc-----hHHHHHHHHHHHHh
Q 032730 55 LTVSSFNAASQLPLLQRL-------NSLVSELDNMVKLSEKCNIQV-PTEVLNLIDDGKNP-----DEFTRDVINSCIAK 121 (135)
Q Consensus 55 i~Vs~f~~~sq~~L~~ki-------n~LV~~L~~L~~~a~~~~i~I-P~EVl~yID~GrNP-----DiyTre~vE~~~~~ 121 (135)
++-.+|.|+..+.|.+.+ +.+.+++-. +-.|+..+ |..|++++-.|++| -+||++-=+.....
T Consensus 53 ii~~~~e~s~~~~Lv~~l~~e~Gi~~~fs~~Ii~----ALs~tsM~~p~~VL~~l~~GkgiP~N~pGIWT~eDDe~L~s~ 128 (168)
T 3cz6_A 53 VISGDYEPSQAEKLVQDLCDETGIRKNFSTSILT----CLSGDLMVFPRYFLNMFKDNVNPPPNVPGIWTHDDDESLKSN 128 (168)
T ss_dssp HHHSCCCTTCHHHHHHHHHHHHCBCHHHHHHHHH----HTTTCGGGHHHHHHHHHHHTCSSCTTCTTCCCHHHHHHHHSC
T ss_pred HHhcccChhhHHHHHHHHHHHhCcccccHHHHHH----HhcCCcccCHHHHHHHHHhCCCCCCCCCCCCChhhHHHHHcC
Confidence 334488888888888888 334444332 22467777 99999999999994 58999866555544
Q ss_pred h
Q 032730 122 N 122 (135)
Q Consensus 122 N 122 (135)
+
T Consensus 129 d 129 (168)
T 3cz6_A 129 D 129 (168)
T ss_dssp C
T ss_pred C
Confidence 4
No 4
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=79.77 E-value=2.4 Score=29.07 Aligned_cols=57 Identities=14% Similarity=0.247 Sum_probs=48.2
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHhhhhcccc--CCCchhHHHHHHHHHHHHHHH-HHh
Q 032730 28 AADDPKQNLNQVINSVQKTLGLLHQLYLTVSSF--NAASQLPLLQRLNSLVSELDN-MVK 84 (135)
Q Consensus 28 ~~~~~~~~L~~~iesl~~~l~~L~ql~i~Vs~f--~~~sq~~L~~kin~LV~~L~~-L~~ 84 (135)
..+..+..|.++=..|++.-+.|.||.+-|.+. .++.+..+..||..+=+.|.+ +.+
T Consensus 28 ~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~ 87 (97)
T 3onj_A 28 PLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKR 87 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888888888999999999999 667788999999999999988 754
No 5
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=62.92 E-value=21 Score=25.78 Aligned_cols=47 Identities=15% Similarity=0.170 Sum_probs=32.6
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhhhccccCCCchhHHHHHHHHHHHHHHH
Q 032730 29 ADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDN 81 (135)
Q Consensus 29 ~~~~~~~L~~~iesl~~~l~~L~ql~i~Vs~f~~~sq~~L~~kin~LV~~L~~ 81 (135)
...+.++++.+- .+.+||.+|.+++. +......+.+++.+||..|-+
T Consensus 9 ~~~~~e~~~nvk-Kck~FL~tLi~las-----~~~~spev~~~Vr~LVq~Ll~ 55 (114)
T 2p6v_A 9 SSAATETMENVX-XCXNFLSTLIXLAS-----SGXQSTETAANVXELVQNLLD 55 (114)
T ss_dssp CCHHHHHHHHHH-HHHHHHHHHHHHHT-----SSSSCHHHHHHHHHHHHHHHT
T ss_pred CcChHHHHHHHH-HHHHHHHHHHHHHh-----ccccChHHHHHHHHHHHHHHH
Confidence 334456666544 78889999999887 222334588999999988853
No 6
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=62.39 E-value=27 Score=24.78 Aligned_cols=91 Identities=14% Similarity=0.076 Sum_probs=55.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhhccc-cCCCchhHHHHHHHHHHHHHHHHHhhhhhc--CCCCc--HH-HHHhhhcC
Q 032730 31 DPKQNLNQVINSVQKTLGLLHQLYLTVSS-FNAASQLPLLQRLNSLVSELDNMVKLSEKC--NIQVP--TE-VLNLIDDG 104 (135)
Q Consensus 31 ~~~~~L~~~iesl~~~l~~L~ql~i~Vs~-f~~~sq~~L~~kin~LV~~L~~L~~~a~~~--~i~IP--~E-Vl~yID~G 104 (135)
.....|++-++.+++++..|.+=.-.+.. .++..-+.+..+...++..|..++...... ...+| .. +-.++.
T Consensus 8 ~L~~~L~~~~~~l~~L~~lL~~E~~~L~~~~d~~~L~~i~~~K~~ll~~L~~~~~~R~~~l~~lgl~~~~~g~~~~~~-- 85 (154)
T 3opc_A 8 ALKSCLERENALVVEFLHALEAETEALMDRRAHESLQAAVQRKETLADDLAQLGAERDALLSGAGLASGPAGTDAAAA-- 85 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhHHHHHHH--
Confidence 34444555555555555555543344444 556677788999999999999888765432 22333 33 223443
Q ss_pred CCch---HHH--HHHHHHHHHhhh
Q 032730 105 KNPD---EFT--RDVINSCIAKNQ 123 (135)
Q Consensus 105 rNPD---iyT--re~vE~~~~~Nq 123 (135)
..|+ .|. ++.++.|+..|+
T Consensus 86 ~~~~l~~~w~~l~~l~~~c~~~N~ 109 (154)
T 3opc_A 86 AHPELGPLWQALQANAAQAREHNQ 109 (154)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHHHHH
Confidence 4674 444 588999999997
No 7
>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.11 E-value=15 Score=25.39 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=21.9
Q ss_pred HHHHHHHHhhhhccccCCCchhH--HHHHHHHHHHHHHHH
Q 032730 45 KTLGLLHQLYLTVSSFNAASQLP--LLQRLNSLVSELDNM 82 (135)
Q Consensus 45 ~~l~~L~ql~i~Vs~f~~~sq~~--L~~kin~LV~~L~~L 82 (135)
.+....+++.-.+--|+..|... +...|+.||-+|+++
T Consensus 14 ~v~~r~r~l~~ell~~~~~s~~yl~~k~eLq~Li~~LDev 53 (89)
T 2d9d_A 14 KVLKRMREIKNELLQAQNPSELYLSSKTELQGLIGQLDEV 53 (89)
T ss_dssp HHHHHHHHHHHHHHHCSCTTTHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHhcCchHHHhhhHHHHHHHHHHHhhc
Confidence 33345666666666676666654 445566666665543
No 8
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=55.64 E-value=27 Score=24.35 Aligned_cols=10 Identities=10% Similarity=0.288 Sum_probs=5.9
Q ss_pred chhHHHHHHH
Q 032730 64 SQLPLLQRLN 73 (135)
Q Consensus 64 sq~~L~~kin 73 (135)
||..|.++++
T Consensus 26 T~~elA~~~~ 35 (123)
T 3qwg_A 26 TSAEVIAALK 35 (123)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHc
Confidence 5556666554
No 9
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=45.63 E-value=35 Score=21.61 Aligned_cols=49 Identities=16% Similarity=0.286 Sum_probs=31.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhhhccccCCCchhHHHHHHHHHHHHH
Q 032730 30 DDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSEL 79 (135)
Q Consensus 30 ~~~~~~L~~~iesl~~~l~~L~ql~i~Vs~f~~~sq~~L~~kin~LV~~L 79 (135)
|..+.++.+-++.|...++.|..+++.... --.+|..+..+|+.-+..+
T Consensus 2 d~~E~e~D~nLd~l~~~~~rlk~ma~~mg~-Eid~QN~~ldrI~~k~d~~ 50 (64)
T 3b5n_D 2 SEMELEIDRNLDQIQQVSNRLKKMALTTGK-ELDSQQKRLNNIEESTDDL 50 (64)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHH
Confidence 456778888888888889999998883311 1234555555555544444
No 10
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=43.16 E-value=93 Score=22.60 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCcHHHHHhhhc
Q 032730 70 QRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDD 103 (135)
Q Consensus 70 ~kin~LV~~L~~L~~~a~~~~i~IP~EVl~yID~ 103 (135)
.++..+-+.|..+.+++.++... |-+|+.|-++
T Consensus 122 ~rL~~ie~RL~~l~~L~RKyg~~-~eell~~~~~ 154 (175)
T 4abx_A 122 EALDRVEARLSALSKLKNKYGPT-LEDVVEFGAQ 154 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHH
Confidence 56677777777778777777633 6778877554
No 11
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=40.15 E-value=80 Score=22.12 Aligned_cols=10 Identities=10% Similarity=0.288 Sum_probs=5.5
Q ss_pred chhHHHHHHH
Q 032730 64 SQLPLLQRLN 73 (135)
Q Consensus 64 sq~~L~~kin 73 (135)
||..|.++++
T Consensus 28 T~~elA~~~~ 37 (135)
T 3r1f_A 28 TSAEVIAALK 37 (135)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHc
Confidence 5555555554
No 12
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=36.58 E-value=38 Score=25.11 Aligned_cols=28 Identities=11% Similarity=0.230 Sum_probs=24.0
Q ss_pred HHHHhhhhccccCCCchhHHHHHHHHHH
Q 032730 49 LLHQLYLTVSSFNAASQLPLLQRLNSLV 76 (135)
Q Consensus 49 ~L~ql~i~Vs~f~~~sq~~L~~kin~LV 76 (135)
...++++.+.-||.++...|.++|++-.
T Consensus 37 ~a~~~g~~~~~~QSN~EgeLid~Ih~a~ 64 (143)
T 1gqo_A 37 FAEALHIQLTFFQSNHEGDLIDAIHEAE 64 (143)
T ss_dssp HHHHHTCEEEEEECSCHHHHHHHHHHHT
T ss_pred HHHHcCCEEEEEeeCCHHHHHHHHHHhh
Confidence 4567899999999999999999998753
No 13
>1xou_A ESPA; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.1
Probab=35.47 E-value=7.9 Score=30.23 Aligned_cols=36 Identities=22% Similarity=0.521 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhh-cCCCCcHHHHHhhhcCCC
Q 032730 68 LLQRLNSLVSELDNMVKLSEK-CNIQVPTEVLNLIDDGKN 106 (135)
Q Consensus 68 L~~kin~LV~~L~~L~~~a~~-~~i~IP~EVl~yID~GrN 106 (135)
..+++.+.|-.+++=+ ++ .-.++|.|||+|+.+.||
T Consensus 80 mAN~VDavIA~~~k~~---dK~ak~~LP~dVI~Ymrd~~N 116 (192)
T 1xou_A 80 MANLVDAKIADVQSSS---DKNAKAQLPDEVISYINDPRN 116 (192)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHhcCC---CccccccCCHHHHHHHHccCC
Confidence 5555555555444322 22 246799999999987444
No 14
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=35.02 E-value=27 Score=28.33 Aligned_cols=30 Identities=17% Similarity=0.381 Sum_probs=22.7
Q ss_pred HHHHhhhhhcCCCCcHHHHHhhhcCCC-chH
Q 032730 80 DNMVKLSEKCNIQVPTEVLNLIDDGKN-PDE 109 (135)
Q Consensus 80 ~~L~~~a~~~~i~IP~EVl~yID~GrN-PDi 109 (135)
+++..++..|.+.||.++++.++..++ |+-
T Consensus 218 ~~~~~~~~~~Gv~iP~~l~~~l~~~~dd~~~ 248 (304)
T 3fst_A 218 KQAKKLADMTNVRIPAWMAQMFDGLDDDAET 248 (304)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHcCCCcCCHHHHHHHHhcCCCHHH
Confidence 344445556899999999999998765 764
No 15
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=34.43 E-value=41 Score=25.07 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=24.9
Q ss_pred HHHHhhhhccccCCCchhHHHHHHHHHHH
Q 032730 49 LLHQLYLTVSSFNAASQLPLLQRLNSLVS 77 (135)
Q Consensus 49 ~L~ql~i~Vs~f~~~sq~~L~~kin~LV~ 77 (135)
...++++.|.-||.++...|.++|++-..
T Consensus 39 ~a~~~g~~~~~~QSN~EgeLId~Ih~a~~ 67 (146)
T 1h05_A 39 EAAELGLKAVVRQSDSEAQLLDWIHQAAD 67 (146)
T ss_dssp HHHHTTCEEEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHcCCEEEEEeeCCHHHHHHHHHHhhh
Confidence 45678999999999999999999988654
No 16
>3pwx_A Putative flagellar HOOK-associated protein; structural genomics, structural protein, PSI-2, protein STRU initiative; 2.50A {Vibrio parahaemolyticus}
Probab=34.09 E-value=1.3e+02 Score=23.14 Aligned_cols=49 Identities=12% Similarity=0.236 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHhhhhccc--cCCCchhHHHHHHHHHHHHHHHHHhhh
Q 032730 38 QVINSVQKTLGLLHQLYLTVSS--FNAASQLPLLQRLNSLVSELDNMVKLS 86 (135)
Q Consensus 38 ~~iesl~~~l~~L~ql~i~Vs~--f~~~sq~~L~~kin~LV~~L~~L~~~a 86 (135)
..++++...|..++++-+...+ +.+..+..+...++.|.++|..+-..+
T Consensus 42 ~aL~~i~~~l~r~rel~vqa~ngt~s~~dr~ai~~E~~~l~~~i~~iaNt~ 92 (239)
T 3pwx_A 42 THLDSVSESLKSMRDIVLWGANGSLTDQDRSGMITELKSYRDSIESSFNAQ 92 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSSCCTTTHHHHHHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3444455556667777776654 677889999999999999999987665
No 17
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=33.99 E-value=43 Score=25.04 Aligned_cols=27 Identities=15% Similarity=-0.001 Sum_probs=23.6
Q ss_pred HHHHhhhhccccCCCchhHHHHHHHHH
Q 032730 49 LLHQLYLTVSSFNAASQLPLLQRLNSL 75 (135)
Q Consensus 49 ~L~ql~i~Vs~f~~~sq~~L~~kin~L 75 (135)
...++++.|.-||.++...|.++|++-
T Consensus 36 ~a~~~g~~v~~~QSN~EgeLId~Ih~a 62 (149)
T 2uyg_A 36 WGAELGLGVVFRQTNYEGQLIEWVQQA 62 (149)
T ss_dssp HHHHTTCCEEEEECSCHHHHHHHHHHT
T ss_pred HHHHcCCEEEEEeeCCHHHHHHHHHHh
Confidence 455789999999999999999999875
No 18
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=33.65 E-value=42 Score=25.21 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=23.5
Q ss_pred HHHHhhhhccccCCCchhHHHHHHHHH
Q 032730 49 LLHQLYLTVSSFNAASQLPLLQRLNSL 75 (135)
Q Consensus 49 ~L~ql~i~Vs~f~~~sq~~L~~kin~L 75 (135)
...++++.|.-||.++...|.++|++-
T Consensus 38 ~a~~~g~~l~~~QSN~EGeLId~Ih~a 64 (154)
T 1uqr_A 38 SAQAQGYELDYFQANGEESLINRIHQA 64 (154)
T ss_dssp HHHHTTCEEEEEECSSHHHHHHHHHHT
T ss_pred HHHHCCCEEEEEeeCCHHHHHHHHHHh
Confidence 456789999999999999999999874
No 19
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=33.61 E-value=89 Score=21.14 Aligned_cols=29 Identities=14% Similarity=0.334 Sum_probs=20.3
Q ss_pred CCCcHHHHHhhhcCC-Cc---hHHHHHHHHHHH
Q 032730 91 IQVPTEVLNLIDDGK-NP---DEFTRDVINSCI 119 (135)
Q Consensus 91 i~IP~EVl~yID~Gr-NP---DiyTre~vE~~~ 119 (135)
+.|+...|..||.|+ +| ..|++.++.+..
T Consensus 30 ~gis~~~is~iE~G~~~~~p~~~~~~~~l~~iA 62 (112)
T 2wus_R 30 TNINPSKLKRIEEGDLKGLDAEVYIKSYIKRYS 62 (112)
T ss_dssp SSCCHHHHHHHHHTCCTTSSCHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHCCCCCCCcchhHHHHHHHHHH
Confidence 458888899999986 43 357777765543
No 20
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=33.59 E-value=15 Score=30.20 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=15.2
Q ss_pred CCCchHHHHHHHHHHHH
Q 032730 104 GKNPDEFTRDVINSCIA 120 (135)
Q Consensus 104 GrNPDiyTre~vE~~~~ 120 (135)
.+||++||.+++..+.+
T Consensus 198 ~kNPeLWs~e~f~~l~~ 214 (308)
T 3vyw_A 198 YKNPELWTLDFLSLIKE 214 (308)
T ss_dssp TTSGGGGSHHHHHHHHT
T ss_pred ccCcccCCHHHHHHHHH
Confidence 69999999999998765
No 21
>4gwp_C Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_C 3rj1_C 1edi_A 1edj_A 1edk_A 1edl_A
Probab=33.13 E-value=74 Score=27.40 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=30.3
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHhhhhccccCCCchhHHHHHHHHHHHHHHHHH
Q 032730 28 AADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMV 83 (135)
Q Consensus 28 ~~~~~~~~L~~~iesl~~~l~~L~ql~i~Vs~f~~~sq~~L~~kin~LV~~L~~L~ 83 (135)
+.|..++.|.++.+||.++...|++. ..++-..|..+.+-|.++|..|.
T Consensus 32 aLEslR~RL~QLt~SL~sL~~~L~~s-------pLP~W~SLqsQfnILlsQL~SLs 80 (407)
T 4gwp_C 32 ALDAVRMRLAQLTHSLRRIRDEMSKA-------ELPQWYTLQSQLNVTLSQLVSVT 80 (407)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCT-------TSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCCcHHHHHHHHHHHHHHHHHH
Confidence 77888899999999988766665432 33344445555555555544443
No 22
>1p68_A De novo designed protein S-824; four helix bundle, de novo protein; NMR {Escherichia coli} SCOP: k.8.1.1 PDB: 2jua_A
Probab=32.72 E-value=68 Score=21.95 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=10.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHh
Q 032730 63 ASQLPLLQRLNSLVSELDNMVK 84 (135)
Q Consensus 63 ~sq~~L~~kin~LV~~L~~L~~ 84 (135)
.|..-|.+-+.++-.-|++|..
T Consensus 52 gsggklqemmkefqqvldelnn 73 (102)
T 1p68_A 52 GSGGKLQEMMKEFQQVLDELNN 73 (102)
T ss_dssp STTTHHHHTHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHHHHH
Confidence 4555455545555444555543
No 23
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=32.59 E-value=42 Score=25.26 Aligned_cols=29 Identities=10% Similarity=-0.126 Sum_probs=24.8
Q ss_pred HHHHhhhhccccCCCchhHHHHHHHHHHH
Q 032730 49 LLHQLYLTVSSFNAASQLPLLQRLNSLVS 77 (135)
Q Consensus 49 ~L~ql~i~Vs~f~~~sq~~L~~kin~LV~ 77 (135)
...++++.|.-||.++...|.++|++-..
T Consensus 43 ~a~~~g~~v~~~QSN~EGeLId~Ih~a~~ 71 (156)
T 1gtz_A 43 AAAAHGGTVDFRQSNHEGELVDWIHEARL 71 (156)
T ss_dssp HHHTTTCCEEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHcCCEEEEEeeCCHHHHHHHHHHhhh
Confidence 45678999999999999999999987643
No 24
>1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium} SCOP: e.32.1.1
Probab=30.19 E-value=78 Score=26.41 Aligned_cols=49 Identities=10% Similarity=0.207 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhccc--cCCCchhHHHHHHHHHHHHHHHHHhh
Q 032730 37 NQVINSVQKTLGLLHQLYLTVSS--FNAASQLPLLQRLNSLVSELDNMVKL 85 (135)
Q Consensus 37 ~~~iesl~~~l~~L~ql~i~Vs~--f~~~sq~~L~~kin~LV~~L~~L~~~ 85 (135)
+.-++++...|..++++-+...+ +.+..+..+...|+.|.++|..+...
T Consensus 26 e~aL~~i~~~Lqr~relavqaangt~s~~dr~ai~~Ei~~l~~ei~~ia~~ 76 (398)
T 1io1_A 26 EGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQ 76 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555556668888777765 55677889999999999999988654
No 25
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=29.80 E-value=52 Score=24.67 Aligned_cols=27 Identities=7% Similarity=0.234 Sum_probs=23.6
Q ss_pred HHHHhhhhccccCCCchhHHHHHHHHH
Q 032730 49 LLHQLYLTVSSFNAASQLPLLQRLNSL 75 (135)
Q Consensus 49 ~L~ql~i~Vs~f~~~sq~~L~~kin~L 75 (135)
...++++.+.-||.++...|.++|++-
T Consensus 44 ~a~~~g~~~~~~QSN~EgeLId~Ih~a 70 (153)
T 3lwz_A 44 QAQGMDVALSHLQSNAEHALIDSIHQA 70 (153)
T ss_dssp HHHHTTEEEEEEECSCHHHHHHHHHHH
T ss_pred HHHHcCCEEEEEecCCHHHHHHHHHHh
Confidence 455789999999999999999999874
No 26
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=29.39 E-value=53 Score=24.53 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=24.3
Q ss_pred HHHHhhhhccccCCCchhHHHHHHHHHH
Q 032730 49 LLHQLYLTVSSFNAASQLPLLQRLNSLV 76 (135)
Q Consensus 49 ~L~ql~i~Vs~f~~~sq~~L~~kin~LV 76 (135)
...++++.+.-||.++...|.++|++-.
T Consensus 41 ~a~~~g~~v~~~QSN~EgeLId~Ih~a~ 68 (151)
T 3u80_A 41 WGKDLGLEVEVRQTDDEAEMVRWMHQAA 68 (151)
T ss_dssp HHHHTTEEEEEEECSCHHHHHHHHHHHH
T ss_pred HHHHcCCEEEEEecCCHHHHHHHHHHhh
Confidence 4557899999999999999999999854
No 27
>1ygm_A Hypothetical protein BSU31320; alpha-helical bundle, integral membrane protein; NMR {Bacillus subtilis subsp}
Probab=29.04 E-value=60 Score=23.11 Aligned_cols=67 Identities=21% Similarity=0.276 Sum_probs=42.6
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHhhhhccccCC------------------CchhHHHHHHHHHHHHHHHHHhhhhhc
Q 032730 28 AADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNA------------------ASQLPLLQRLNSLVSELDNMVKLSEKC 89 (135)
Q Consensus 28 ~~~~~~~~L~~~iesl~~~l~~L~ql~i~Vs~f~~------------------~sq~~L~~kin~LV~~L~~L~~~a~~~ 89 (135)
.-+.-++||.+-|..+-+-|..+.|++---..=.| -.++.+++|+|.+|.++-.++-..+..
T Consensus 33 Vt~~EkeQLS~AIDrmnEGLD~fIqlYNeSe~DepLiqledetael~~qA~~~yG~e~~N~klN~IIkqiLs~sls~eg~ 112 (118)
T 1ygm_A 33 VTSEEKEQLSTAIDRMNEGLDAFIQLYNESEIDEPLIQLDDDTAELMKQARDMYGQEKLNEKLNTIIKQILSISVSEEGE 112 (118)
T ss_dssp CSCSHHHHHHHHHHTTTHHHHHHHHHCCSSSCSSCSSCSHHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHTTTSCSST
T ss_pred cChHHHHHHHHHHHHHhhhHHHHHHHHccccccccccccchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhcccCc
Confidence 34567888998888777777776665431111011 246678999999999987776544443
Q ss_pred CCCCc
Q 032730 90 NIQVP 94 (135)
Q Consensus 90 ~i~IP 94 (135)
.--||
T Consensus 113 ~~lvp 117 (118)
T 1ygm_A 113 KELVP 117 (118)
T ss_dssp TTSCC
T ss_pred cccCC
Confidence 44444
No 28
>4h63_H Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=28.39 E-value=1.1e+02 Score=23.41 Aligned_cols=24 Identities=21% Similarity=0.497 Sum_probs=16.8
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHH
Q 032730 28 AADDPKQNLNQVINSVQKTLGLLH 51 (135)
Q Consensus 28 ~~~~~~~~L~~~iesl~~~l~~L~ 51 (135)
+.+..+..|.++.+||.+++..|.
T Consensus 12 ~LEs~R~Rl~qL~~Sl~~l~~~l~ 35 (200)
T 4h63_H 12 SLEAIRHRIAQIVQSLTHFLAILH 35 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356677788888888877665554
No 29
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=28.10 E-value=1.2e+02 Score=20.83 Aligned_cols=28 Identities=11% Similarity=0.190 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhhh--hhcCCCCc
Q 032730 67 PLLQRLNSLVSELDNMVKLS--EKCNIQVP 94 (135)
Q Consensus 67 ~L~~kin~LV~~L~~L~~~a--~~~~i~IP 94 (135)
.|..++.++-..+..|..+. ....+.||
T Consensus 26 ~l~~~i~e~~~~~e~l~~l~~~~~~~~lvp 55 (133)
T 1fxk_C 26 AVRATISELEILEKTLSDIQGKDGSETLVP 55 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCeEEEE
Confidence 45666666666665555554 33344455
No 30
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=27.32 E-value=1.3e+02 Score=19.87 Aligned_cols=28 Identities=14% Similarity=0.375 Sum_probs=21.1
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhhh
Q 032730 29 ADDPKQNLNQVINSVQKTLGLLHQLYLT 56 (135)
Q Consensus 29 ~~~~~~~L~~~iesl~~~l~~L~ql~i~ 56 (135)
.+..+.+..+-++.|...|+.|+.+++.
T Consensus 21 ~d~~e~eqD~~Ld~ls~~l~rLk~mA~~ 48 (87)
T 1l4a_D 21 NDAREDDMENNMKEVSSMIGNLRNMAID 48 (87)
T ss_dssp CSHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3456777777777788888889998873
No 31
>2clb_A DPS-like protein; DI-iron carboxylate, hypothetical protein, bacterioferritin, hydrogen peroxide, metal binding protein, archaea; 2.4A {Sulfolobus solfataricus}
Probab=26.82 E-value=1.7e+02 Score=21.35 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=43.8
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhh-hccccCCCchhHHHHHHHHHHHHHHHHHhh
Q 032730 29 ADDPKQNLNQVINSVQKTLGLLHQLYL-TVSSFNAASQLPLLQRLNSLVSELDNMVKL 85 (135)
Q Consensus 29 ~~~~~~~L~~~iesl~~~l~~L~ql~i-~Vs~f~~~sq~~L~~kin~LV~~L~~L~~~ 85 (135)
..++++-|+.+++..+.++..++++.- +-.. ++.+.+.|..-+.+..++...+.+.
T Consensus 110 ~~~~~e~l~~~l~~e~~v~~~~~~~i~~A~e~-D~~T~dlL~~~l~e~ee~~~~l~~~ 166 (188)
T 2clb_A 110 WKDPKEILKVLLEAEQCAIRTWKEVCDMTYGK-DPRTYDLAQRILQEEIEHEAWFLEL 166 (188)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347889999999999999999998654 4444 8888888888888877777666553
No 32
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=26.71 E-value=64 Score=24.67 Aligned_cols=28 Identities=18% Similarity=0.125 Sum_probs=24.4
Q ss_pred HHHHhhhhccccCCCchhHHHHHHHHHH
Q 032730 49 LLHQLYLTVSSFNAASQLPLLQRLNSLV 76 (135)
Q Consensus 49 ~L~ql~i~Vs~f~~~sq~~L~~kin~LV 76 (135)
...++++.|.-||.+....|.++|.+-.
T Consensus 65 ~a~~~G~~l~~~QSN~EGeLId~Ih~A~ 92 (172)
T 3n8k_A 65 EAAELGLKAVVRQSDSEAQLLDWIHQAA 92 (172)
T ss_dssp HHHHTTCEEEEEECSCHHHHHHHHHHHH
T ss_pred HHHHcCCEEEEEecCCHHHHHHHHHHhh
Confidence 4567899999999999999999999864
No 33
>2x96_A Angiotensin converting enzyme; hydrolase, ACE inhibitor, zinc metallopeptidase; HET: RX3 EPE NAG BMA MAN; 1.85A {Drosophila melanogaster} PDB: 2x8z_A* 2x90_A* 2x91_A* 2x8y_A* 2x97_A* 2xhm_A* 3zqz_A* 2x94_A* 2x92_A* 2x93_A* 2x95_A* 1j36_A* 1j37_A* 1j38_A
Probab=25.56 E-value=1.4e+02 Score=26.29 Aligned_cols=44 Identities=16% Similarity=0.317 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhh--------hcCCCCcHHHHHhhhcCCCchH
Q 032730 66 LPLLQRLNSLVSELDNMVKLSE--------KCNIQVPTEVLNLIDDGKNPDE 109 (135)
Q Consensus 66 ~~L~~kin~LV~~L~~L~~~a~--------~~~i~IP~EVl~yID~GrNPDi 109 (135)
....++++.+++.++++...+. .|+..||+++.+++-..+|++.
T Consensus 94 ~~~~~~~~~l~~~~~~~y~~a~v~~~~~~~~~~l~l~~~l~~~~a~s~d~~~ 145 (598)
T 2x96_A 94 EDDYAELLDTLSAMESNFAKVKVCDYKDSTKCDLALDPEIEEVISKSRDHEE 145 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCBCCSSCTTCCCBCTTTHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCccccccCCCHHHHHHHHHCCCHHH
Confidence 4567778888888888876544 1556699999999988888764
No 34
>2d4x_A Flagellar HOOK-associated protein 3; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 1.90A {Salmonella typhimurium}
Probab=25.48 E-value=1.2e+02 Score=22.80 Aligned_cols=48 Identities=13% Similarity=0.239 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhhhhccc--cCCCchhHHHHHHHHHHHHHHHHHhhh
Q 032730 39 VINSVQKTLGLLHQLYLTVSS--FNAASQLPLLQRLNSLVSELDNMVKLS 86 (135)
Q Consensus 39 ~iesl~~~l~~L~ql~i~Vs~--f~~~sq~~L~~kin~LV~~L~~L~~~a 86 (135)
-++++...|..++++-+...+ +.+..+..+...++.|.++|..+-...
T Consensus 41 aL~~i~~~l~r~rel~vqa~ngt~s~~dr~~i~~e~~~l~~~i~~~an~~ 90 (248)
T 2d4x_A 41 VLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLMNLANST 90 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 344555556667777776654 456778899999999999999887654
No 35
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface, exposed amphipathic helix, three stranded beta sheet; 2.60A {Escherichia coli} SCOP: d.271.1.1
Probab=25.33 E-value=1.1e+02 Score=21.68 Aligned_cols=35 Identities=17% Similarity=0.161 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhhhccccCCCchhHHHHHHHHHHH
Q 032730 43 VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVS 77 (135)
Q Consensus 43 l~~~l~~L~ql~i~Vs~f~~~sq~~L~~kin~LV~ 77 (135)
+....+.|++.....+.|.++--..+.+|+++++.
T Consensus 91 ~k~l~~lLyd~AlL~~G~~leDp~~F~~Ri~~ll~ 125 (126)
T 1sf8_A 91 FSEWVELLLDQALLAERGTLEDPNLFIRRMNQLLV 125 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHh
Confidence 34455678898888888988777789999999874
No 36
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=24.84 E-value=2.8e+02 Score=22.46 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=24.6
Q ss_pred CCcHHHHH-hhhcCC-------CchHHHHHHHHHHHHhhh
Q 032730 92 QVPTEVLN-LIDDGK-------NPDEFTRDVINSCIAKNQ 123 (135)
Q Consensus 92 ~IP~EVl~-yID~Gr-------NPDiyTre~vE~~~~~Nq 123 (135)
+=|+.+++ |.|+|+ ||..|-..+.+..+++-+
T Consensus 131 PP~L~lLd~yrdDgk~~LK~YTDPSfFfdlWkeeml~d~k 170 (279)
T 3p8c_D 131 PPPLNILTPYRDDGKEGLKFYTNPSYFFDLWKEKMLQDTE 170 (279)
T ss_dssp CCCGGGGGGGCSSCCCGGGGTCCTTHHHHHHHHHHHHHHH
T ss_pred CCCCccccccccCChhHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 44555554 788998 999999999988877665
No 37
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=24.64 E-value=80 Score=21.12 Aligned_cols=37 Identities=14% Similarity=0.142 Sum_probs=28.3
Q ss_pred hhhcCCCCcHHHHHhhhc------CCCchHHHHHHHHHHHHhh
Q 032730 86 SEKCNIQVPTEVLNLIDD------GKNPDEFTRDVINSCIAKN 122 (135)
Q Consensus 86 a~~~~i~IP~EVl~yID~------GrNPDiyTre~vE~~~~~N 122 (135)
+...+|.+|.++..+||+ -.|...|-|+-|.......
T Consensus 3 ~~~~sIsL~~~l~~~i~~~V~sG~Y~s~SEviR~~lR~l~~re 45 (88)
T 3kxe_C 3 SKNTSVVLGDHFQAFIDSQVADGRYGSASEVIRAGLRLLEENE 45 (88)
T ss_dssp --CEEECCCHHHHHHHHHHHTTTSCSSHHHHHHHHHHHHHHHH
T ss_pred CceeeeecCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHh
Confidence 445688999999988874 4689999999988777654
No 38
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=24.28 E-value=24 Score=27.47 Aligned_cols=18 Identities=33% Similarity=0.573 Sum_probs=15.4
Q ss_pred CCCchHHHHHHHHHHHHh
Q 032730 104 GKNPDEFTRDVINSCIAK 121 (135)
Q Consensus 104 GrNPDiyTre~vE~~~~~ 121 (135)
.+||++|+.++++.+.+.
T Consensus 185 ~~~p~lw~~~~l~~l~~~ 202 (257)
T 2qy6_A 185 AKNPDMWTQNLFNAMARL 202 (257)
T ss_dssp TTCGGGCCHHHHHHHHHH
T ss_pred ccChhhcCHHHHHHHHHH
Confidence 579999999999987763
No 39
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=24.09 E-value=1.3e+02 Score=18.26 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=16.0
Q ss_pred CcHHHHHhhhcCC--CchHHHHHHH
Q 032730 93 VPTEVLNLIDDGK--NPDEFTRDVI 115 (135)
Q Consensus 93 IP~EVl~yID~Gr--NPDiyTre~v 115 (135)
|+..-+..++.|+ +|.+-+-.-+
T Consensus 39 is~~~is~~E~g~~~~p~~~~l~~i 63 (86)
T 2ofy_A 39 ISVETLRKIETGRIATPAFFTIAAV 63 (86)
T ss_dssp CCHHHHHHHHTTCCSSCBHHHHHHH
T ss_pred CCHHHHHHHHcCCCCCCCHHHHHHH
Confidence 6778888888886 4776554433
No 40
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=24.02 E-value=1.7e+02 Score=19.70 Aligned_cols=31 Identities=16% Similarity=0.343 Sum_probs=21.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 032730 30 DDPKQNLNQVINSVQKTLGLLHQLYLTVSSF 60 (135)
Q Consensus 30 ~~~~~~L~~~iesl~~~l~~L~ql~i~Vs~f 60 (135)
......|+..++.|+..|.+|.+--.++..+
T Consensus 35 ~~~~~El~~~l~el~e~l~DL~~SI~i~e~~ 65 (95)
T 2c5k_T 35 DDQEEEIQDILKDVEETIVDLDRSIIVMKRD 65 (95)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4666777787888887777777744445444
No 41
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=23.22 E-value=61 Score=21.01 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=24.8
Q ss_pred hhcCCCCcHHHHHhhhcCCCchHHH-HHHHHHHHHhhhhhhhhHHHhhc
Q 032730 87 EKCNIQVPTEVLNLIDDGKNPDEFT-RDVINSCIAKNQVTKGKTDAFKV 134 (135)
Q Consensus 87 ~~~~i~IP~EVl~yID~GrNPDiyT-re~vE~~~~~Nq~~kGK~~a~~~ 134 (135)
++.+|.||.++|+-+-.- -+-| +|.++-+ +||+..=|.+.-|+
T Consensus 17 e~SnIrIP~DIIEdl~~~---~L~te~EVmnYi--EnqR~~WKLEN~KK 60 (67)
T 2bnk_A 17 EQSNIRIPSDIIEDLVNQ---RLQSEQEVLNYI--ETQRTYWKLENQKK 60 (67)
T ss_dssp HHTTCCCCHHHHHHHHTT---CCCCSHHHHHHH--HHHHHHHHHHTTSC
T ss_pred HHcCCcCcHHHHHHHHHH---hhhhHHHHHHHH--HhhHhHHhhhhhHH
Confidence 456899999999876421 1222 2333322 56666666665444
No 42
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=22.73 E-value=42 Score=26.99 Aligned_cols=29 Identities=17% Similarity=0.564 Sum_probs=21.2
Q ss_pred HHHhhhhhcCCCCcHHHHHhhhcCC-CchH
Q 032730 81 NMVKLSEKCNIQVPTEVLNLIDDGK-NPDE 109 (135)
Q Consensus 81 ~L~~~a~~~~i~IP~EVl~yID~Gr-NPDi 109 (135)
++..++..|.+.||.++++.++..+ +|+.
T Consensus 216 ~~~~~~~~~Gv~iP~~l~~~l~~~~~d~~~ 245 (310)
T 3apt_A 216 QLRRFTEVCGASIPGPLLAKLERHQDDPKA 245 (310)
T ss_dssp HHHHHHHTSCCCCCHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHhccCCHHH
Confidence 3334445689999999999998755 5774
No 43
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=22.36 E-value=1.9e+02 Score=19.81 Aligned_cols=92 Identities=12% Similarity=0.183 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhccccCCCchhHHHHHHHHHHHHHHHHHhhhhh----cCCCCcHHHH-HhhhcC-C
Q 032730 32 PKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEK----CNIQVPTEVL-NLIDDG-K 105 (135)
Q Consensus 32 ~~~~L~~~iesl~~~l~~L~ql~i~Vs~f~~~sq~~L~~kin~LV~~L~~L~~~a~~----~~i~IP~EVl-~yID~G-r 105 (135)
....|++-++.+++++..|.+=.-.+...+...-..+..+...++..|..++..... ..++-|..=+ +++... .
T Consensus 8 L~~~L~~~~~~l~~L~~lL~~E~~~L~~~d~~~L~~i~~~k~~ll~~L~~~~~~R~~~l~~lg~~~~~~~~~~l~~~~~~ 87 (157)
T 2fup_A 8 LLDLFAEDIGHANQLLQLVDEEFQALERRELPVLQQLLGAKQPLMQQLERNGRARAEILREAGVSLDREGLARYARERAD 87 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHhcccc
Confidence 455666666666666666666555555667777888999999999999998876432 2322222222 233331 1
Q ss_pred Cch---HHH--HHHHHHHHHhhh
Q 032730 106 NPD---EFT--RDVINSCIAKNQ 123 (135)
Q Consensus 106 NPD---iyT--re~vE~~~~~Nq 123 (135)
.|. +|. ++.++.|+..|+
T Consensus 88 ~~~l~~~~~~l~~l~~~~~~~N~ 110 (157)
T 2fup_A 88 GAELLARGDELGELLERCQQANL 110 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 111 232 367778888887
No 44
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=22.04 E-value=70 Score=24.53 Aligned_cols=29 Identities=10% Similarity=0.275 Sum_probs=24.5
Q ss_pred HHH--HhhhhccccCCCchhHHHHHHHHHHH
Q 032730 49 LLH--QLYLTVSSFNAASQLPLLQRLNSLVS 77 (135)
Q Consensus 49 ~L~--ql~i~Vs~f~~~sq~~L~~kin~LV~ 77 (135)
... ++++.|.-||.++...|.++|.+-..
T Consensus 46 ~a~~~~~g~~l~~~QSN~EGeLId~Ih~a~~ 76 (176)
T 2c4w_A 46 FVKQGNLDVELEFFQTNFEGEIIDKIQESVG 76 (176)
T ss_dssp HHHHTTCCEEEEEEECSCHHHHHHHHHHHHS
T ss_pred HhccccCCCEEEEEeeCcHHHHHHHHHHhcc
Confidence 456 78899999999999999999988643
No 45
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=21.67 E-value=1.9e+02 Score=19.53 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccCCCchhHHH-HHHHHHHHHHHHHHhhhhhcCCCCcHHHHHhhhcCCCch
Q 032730 35 NLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLL-QRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPD 108 (135)
Q Consensus 35 ~L~~~iesl~~~l~~L~ql~i~Vs~f~~~sq~~L~-~kin~LV~~L~~L~~~a~~~~i~IP~EVl~yID~GrNPD 108 (135)
++..-|+.+...+..|.+ .++.|+|....... +-+.+|.+..+.+.. =|+++|....|.+
T Consensus 10 k~~~el~~v~~n~~lL~E---ML~~~~p~~~~~~~~el~~eL~~~c~~~qp-----------~i~~li~~~~dee 70 (103)
T 1wrd_A 10 KLRSELEMVSGNVRVMSE---MLTELVPTQAEPADLELLQELNRTCRAMQQ-----------RVLELIPQIANEQ 70 (103)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHSCTTTCCHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHhcCCCCCCcccHHHHHHHHHHHHHHHH-----------HHHHHHhccCCHH
Confidence 344434444443444444 56678886543332 455666666666543 2466666666665
No 46
>3k8w_A Flagellin homolog; flagellum, structural protein, bacterial flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A
Probab=21.06 E-value=1.3e+02 Score=24.98 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHhhhhccc--cCCCchhHHHHHHHHHHHHHHHHHhhh
Q 032730 39 VINSVQKTLGLLHQLYLTVSS--FNAASQLPLLQRLNSLVSELDNMVKLS 86 (135)
Q Consensus 39 ~iesl~~~l~~L~ql~i~Vs~--f~~~sq~~L~~kin~LV~~L~~L~~~a 86 (135)
-++++...|..++++-+...+ +.+..+..+...++.|.++|..+-...
T Consensus 61 AL~~i~diLqrmRELaVQAaNgT~s~~DR~aIa~Ei~qL~~eI~~iANsT 110 (326)
T 3k8w_A 61 ALGEISNNLQRIRELAVQASNGTNTQTDRDALQAEVTQLQSEIQRVAEQT 110 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344555556667777776654 556678899999999999999987643
No 47
>3v47_C Flagellin; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Salmonella enterica subsp}
Probab=20.55 E-value=1e+02 Score=26.43 Aligned_cols=50 Identities=10% Similarity=0.253 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhccc--cCCCchhHHHHHHHHHHHHHHHHHhhh
Q 032730 37 NQVINSVQKTLGLLHQLYLTVSS--FNAASQLPLLQRLNSLVSELDNMVKLS 86 (135)
Q Consensus 37 ~~~iesl~~~l~~L~ql~i~Vs~--f~~~sq~~L~~kin~LV~~L~~L~~~a 86 (135)
+.-++++...|..++++-+...+ +.+..+..|...|+.|.++|..+-...
T Consensus 38 EgAL~~i~~iLqRmRELaVQAaNgT~s~~DR~aIq~Ei~qL~~eI~~Ian~T 89 (425)
T 3v47_C 38 EGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQT 89 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33444555556667777766654 456678899999999999999987644
No 48
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=20.46 E-value=82 Score=19.02 Aligned_cols=39 Identities=26% Similarity=0.461 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHH-hhhhccccCCCchhHHHHHHHHH
Q 032730 36 LNQVINSVQKTLGLLHQ-LYLTVSSFNAASQLPLLQRLNSL 75 (135)
Q Consensus 36 L~~~iesl~~~l~~L~q-l~i~Vs~f~~~sq~~L~~kin~L 75 (135)
|+..++.|+..|+.|.- +.-..+.|. ++|.-|.+||..|
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~-ssq~KlKqRit~l 42 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYN-ATQMKMKQRLSQL 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 45555555555554432 222333332 3455566666544
No 49
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=20.40 E-value=1.4e+02 Score=21.67 Aligned_cols=59 Identities=7% Similarity=0.023 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccc--cCCCchhHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 032730 35 NLNQVINSVQKTLGLLHQLYLTVSS--FNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQV 93 (135)
Q Consensus 35 ~L~~~iesl~~~l~~L~ql~i~Vs~--f~~~sq~~L~~kin~LV~~L~~L~~~a~~~~i~I 93 (135)
..+..++.+.+.++....++...-. +-|.+...-.+.+..+++.|+.+-+.+....+.|
T Consensus 78 ~~~~~~~~~~~~i~~A~~lG~~~v~~~~~p~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l 138 (281)
T 3u0h_A 78 VFLRELSLLPDRARLCARLGARSVTAFLWPSMDEEPVRYISQLARRIRQVAVELLPLGMRV 138 (281)
T ss_dssp HHHHHHHTHHHHHHHHHHTTCCEEEEECCSEESSCHHHHHHHHHHHHHHHHHHHGGGTCEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEeecCCCCCcchhhHHHHHHHHHHHHHHHHHcCCEE
Confidence 4555667777888888898853322 3343222223567788888888887766544433
No 50
>2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repres; NMR {Sulfolobus islandicus rod-shaped virus}
Probab=20.11 E-value=45 Score=20.49 Aligned_cols=37 Identities=8% Similarity=0.136 Sum_probs=29.9
Q ss_pred hhhhcCCCCcHHHHHhh-----hcCCCchHHHHHHHHHHHHh
Q 032730 85 LSEKCNIQVPTEVLNLI-----DDGKNPDEFTRDVINSCIAK 121 (135)
Q Consensus 85 ~a~~~~i~IP~EVl~yI-----D~GrNPDiyTre~vE~~~~~ 121 (135)
.+..+++.||+|+-.-+ .+|+.+.-|-+|.|+..+..
T Consensus 12 ~kg~~~vrId~eLH~rlk~~Aa~~g~Sln~~i~eAL~~yl~~ 53 (56)
T 2kel_A 12 QKAVFGIYMDKDLKTRLKVYCAKNNLQLTQAIEEAIKEYLQK 53 (56)
T ss_dssp CEEEEEEEEEHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CeeeEEEEeCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34456899999998855 78999999999999987654
Done!