BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032733
(135 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 31/38 (81%)
Query: 98 FEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPG 135
F+P+ +LG+ AS +DIKKAY++L+ ++HPDKN DPG
Sbjct: 17 FDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPG 54
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 29/35 (82%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPG 135
+ ILG+ GASD D+KKAYRRL++++HPDKN PG
Sbjct: 10 YEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPG 44
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 28/35 (80%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPG 135
+ LGL GASD +IK+AYRR +++YHPDKN +PG
Sbjct: 6 YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG 40
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 28/33 (84%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD 133
+ +LGL+ A+ DIKK+YR+L+++YHPDKNPD
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPD 52
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 28/33 (84%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD 133
+ +LG++ AS DIKKAYR+L++++HPDKNPD
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPD 44
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 30/33 (90%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD 133
+ +LG++ ASD+++KKAYR++++++HPDKNPD
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDKNPD 43
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 29/35 (82%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPG 135
+ +LG++ A+ ++KKAYR+L+++YHPDKNP+ G
Sbjct: 9 YDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEG 43
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 25/33 (75%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD 133
+ IL + AS DIKKAYRR ++Q+HPDKNPD
Sbjct: 5 YEILDVPRSASADDIKKAYRRKALQWHPDKNPD 37
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 25/31 (80%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKN 131
+ ILG+ A + +I+KAY+RL+++YHPD+N
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRN 36
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 27/33 (81%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD 133
+S+LG+ AS +I++A+++L+++ HPDKNP+
Sbjct: 24 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPN 56
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP 134
+ ILG+ AS+ IKKA+ +L+++YHPDKN P
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSP 43
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 25/31 (80%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKN 131
+ ILG+ A + +I+KAY+RL+++YHPD+N
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRN 36
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD 133
+ +L + AS IKKAYR+L++++HPDKNP+
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPE 44
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 25/31 (80%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKN 131
+ ILG+ A + +I+KAY+RL+++YHPD+N
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRN 36
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 99 EPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPG 135
+ + +LG++ GAS ++ KAYR+L++ HPDK PG
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPG 64
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 27/33 (81%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD 133
+S+LG+ AS +I++A+++L+++ HPDKNP+
Sbjct: 5 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPN 37
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD 133
+ ILG+ AS +IKKAY +L+ +YHPD N D
Sbjct: 10 YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKD 42
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 93 REMQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPD 129
++ Q + + ILG++ A +I KAYR+L++Q+HPD
Sbjct: 377 KQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 93 REMQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPD 129
++ Q + + ILG++ A +I KAYR+L++Q+HPD
Sbjct: 377 KQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 23/30 (76%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDK 130
+ +LG+ A++ ++KK YR+ +++YHPDK
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDK 40
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKN 131
+SILG + A+ SD+K+ Y++L + YHPDK
Sbjct: 13 YSILGADPSANISDLKQKYQKLILMYHPDKQ 43
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKN 131
+SILG + A+ SD+K+ Y++L + YHPDK
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQ 49
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 92 SREMQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPD 129
S M++ + ++ILG++ IK AYRRL+ +YHPD
Sbjct: 22 SNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPD 59
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 32.7 bits (73), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPD--KNPD 133
++I+G++ IK AYRRL+ +YHPD K PD
Sbjct: 8 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPD 42
>pdb|1IUR|A Chain A, Dnaj Domain Of Human Kiaa0730 Protein
Length = 88
Score = 32.0 bits (71), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 112 DSDIKKAYRRLSIQYHPDKNPD 133
+S+ KK RRL +++HPDKNP+
Sbjct: 30 ESERKKIIRRLYLKWHPDKNPE 51
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKN 131
+ +LG+ A+ + IK AY R YHPD+N
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRN 50
>pdb|4F99|B Chain B, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9A|B Chain B, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9A|D Chain D, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9B|B Chain B, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
pdb|4F9B|D Chain D, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
pdb|4F9C|B Chain B, Human Cdc7 Kinase In Complex With Dbf4 And Xl413
Length = 144
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 2 AATEENSQLFPIFILTIMALPLVPYTILKLCHAFS 36
E+ SQL+ F L + +P + Y+I K C F
Sbjct: 14 VKVEDMSQLYRPFYLQLTNMPFINYSIQKPCSPFD 48
>pdb|2PF4|E Chain E, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|F Chain F, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|G Chain G, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|H Chain H, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 174
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 89 KSTSREMQVFEPFSILGLEHGASDSD--IKKAYRRLSIQYHPDKNPD 133
K +RE + + +LGLE A + ++KAY + ++HPDK D
Sbjct: 3 KVLNRE-ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD 48
>pdb|2GUZ|A Chain A, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|C Chain C, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|E Chain E, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|G Chain G, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|I Chain I, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|K Chain K, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|M Chain M, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|O Chain O, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
Length = 71
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 94 EMQVFEPFSILGL-EHGASDSDIKKAYRRLSIQYHPDKNPDP 134
+M E IL L E+ + +K+ +R++ + HPDK P
Sbjct: 10 KMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSP 51
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 113 SDIKKAYRRLSIQYHPD 129
S ++K YR+L Q+HPD
Sbjct: 33 SRLRKEYRQLQAQHHPD 49
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 113 SDIKKAYRRLSIQYHPD 129
S ++K YR+L Q+HPD
Sbjct: 25 SRLRKEYRQLQAQHHPD 41
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,144,916
Number of Sequences: 62578
Number of extensions: 84971
Number of successful extensions: 170
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 140
Number of HSP's gapped (non-prelim): 33
length of query: 135
length of database: 14,973,337
effective HSP length: 88
effective length of query: 47
effective length of database: 9,466,473
effective search space: 444924231
effective search space used: 444924231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)