Query 032733
Match_columns 135
No_of_seqs 171 out of 1274
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 05:15:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032733.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032733hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0721 Molecular chaperone (D 100.0 2.7E-42 5.8E-47 265.8 10.0 132 1-134 4-135 (230)
2 COG5407 SEC63 Preprotein trans 99.9 7.2E-29 1.6E-33 207.9 5.2 124 3-133 6-133 (610)
3 KOG0713 Molecular chaperone (D 99.6 1.4E-15 2.9E-20 124.2 4.1 39 96-134 14-52 (336)
4 cd06257 DnaJ DnaJ domain or J- 99.4 2.5E-13 5.5E-18 83.1 4.0 35 99-133 1-35 (55)
5 smart00271 DnaJ DnaJ molecular 99.4 7.1E-13 1.5E-17 82.6 4.2 36 98-133 1-36 (60)
6 PF00226 DnaJ: DnaJ domain; I 99.4 5.2E-13 1.1E-17 84.5 3.4 36 99-134 1-36 (64)
7 PTZ00037 DnaJ_C chaperone prot 99.3 3.8E-13 8.3E-18 113.7 3.2 38 96-133 26-63 (421)
8 PTZ00100 DnaJ chaperone protei 99.3 6.2E-13 1.3E-17 94.6 2.1 47 88-134 55-101 (116)
9 PRK14279 chaperone protein Dna 99.3 1.6E-12 3.5E-17 109.0 4.1 37 97-133 8-44 (392)
10 PRK14295 chaperone protein Dna 99.2 4.6E-12 1E-16 106.1 4.1 37 97-133 8-44 (389)
11 KOG0717 Molecular chaperone (D 99.2 1.4E-11 2.9E-16 104.3 3.2 39 96-134 6-44 (508)
12 KOG0716 Molecular chaperone (D 99.2 1.7E-11 3.7E-16 97.9 3.5 38 96-133 29-66 (279)
13 KOG0715 Molecular chaperone (D 99.1 2.9E-11 6.2E-16 97.9 4.0 37 98-134 43-79 (288)
14 KOG0719 Molecular chaperone (D 99.1 2.5E-11 5.3E-16 95.4 3.2 36 97-132 13-48 (264)
15 KOG0722 Molecular chaperone (D 99.1 5.4E-11 1.2E-15 94.8 4.9 40 96-135 31-70 (329)
16 PRK09430 djlA Dna-J like membr 99.1 9E-11 2E-15 94.0 4.0 37 96-132 198-234 (267)
17 PTZ00341 Ring-infected erythro 99.0 2E-10 4.3E-15 104.6 4.4 39 96-134 571-609 (1136)
18 KOG1150 Predicted molecular ch 99.0 3.1E-10 6.8E-15 87.6 2.6 38 97-134 52-89 (250)
19 PHA02624 large T antigen; Prov 98.9 8.2E-10 1.8E-14 97.0 2.7 38 97-134 10-49 (647)
20 KOG0624 dsRNA-activated protei 98.9 9.6E-10 2.1E-14 91.4 2.7 40 95-134 391-430 (504)
21 KOG0718 Molecular chaperone (D 98.8 2.3E-09 4.9E-14 91.2 3.2 41 95-135 6-46 (546)
22 KOG0723 Molecular chaperone (D 98.6 3.7E-08 8.1E-13 68.9 3.1 50 85-134 43-92 (112)
23 KOG0550 Molecular chaperone (D 98.6 2.1E-08 4.5E-13 84.7 1.7 38 96-133 371-408 (486)
24 KOG0720 Molecular chaperone (D 98.5 6.1E-08 1.3E-12 82.4 3.1 39 96-134 233-271 (490)
25 KOG1789 Endocytosis protein RM 98.1 2E-06 4.3E-11 79.7 2.9 40 94-133 1277-1320(2235)
26 KOG0568 Molecular chaperone (D 97.6 4.4E-05 9.6E-10 60.7 3.1 38 96-133 45-82 (342)
27 PRK03578 hscB co-chaperone Hsc 97.5 0.00015 3.3E-09 55.0 4.2 25 109-133 19-43 (176)
28 PF03656 Pam16: Pam16; InterP 97.0 0.0004 8.6E-09 50.3 2.0 40 94-133 54-93 (127)
29 COG1076 DjlA DnaJ-domain-conta 96.7 0.00064 1.4E-08 51.2 1.2 34 98-131 113-146 (174)
30 COG5269 ZUO1 Ribosome-associat 96.6 0.0018 3.9E-08 52.7 3.2 42 90-131 35-79 (379)
31 KOG0431 Auxilin-like protein a 95.2 0.013 2.8E-07 50.5 2.4 30 104-133 394-423 (453)
32 PF13446 RPT: A repeated domai 92.5 0.11 2.4E-06 32.4 2.3 28 97-124 4-31 (62)
33 KOG3442 Uncharacterized conser 91.5 0.27 5.8E-06 35.6 3.5 38 96-133 57-94 (132)
34 COG2991 Uncharacterized protei 83.9 2.1 4.6E-05 28.1 3.8 15 41-55 42-57 (77)
35 cd01780 PLC_epsilon_RA Ubiquit 67.1 6.2 0.00014 27.1 2.6 35 96-130 9-43 (93)
36 PF03579 SHP: Small hydrophobi 65.7 9.5 0.00021 24.1 3.0 21 6-26 10-30 (64)
37 PF12955 DUF3844: Domain of un 57.7 17 0.00037 25.4 3.5 30 5-34 63-92 (103)
38 COG5552 Uncharacterized conser 54.1 11 0.00023 25.1 1.9 33 99-131 4-40 (88)
39 PF12434 Malate_DH: Malate deh 49.5 20 0.00044 19.1 2.2 16 113-128 11-26 (28)
40 PF09125 COX2-transmemb: Cytoc 44.3 46 0.00099 19.0 3.2 21 10-30 15-35 (38)
41 PF15176 LRR19-TM: Leucine-ric 43.3 45 0.00098 23.2 3.7 29 3-31 9-37 (102)
42 TIGR03778 VPDSG_CTERM VPDSG-CT 43.2 29 0.00062 18.3 2.1 19 6-24 3-21 (26)
43 PF05478 Prominin: Prominin; 42.6 39 0.00085 31.2 4.4 19 14-32 97-115 (806)
44 PF10320 7TM_GPCR_Srsx: Serpen 38.6 34 0.00073 26.8 2.9 51 72-122 194-256 (257)
45 KOG3767 Sideroflexin [General 38.5 33 0.00072 28.6 2.9 33 100-132 56-88 (328)
46 PF10192 GpcrRhopsn4: Rhodopsi 38.5 93 0.002 24.4 5.5 29 3-31 22-50 (257)
47 PF12725 DUF3810: Protein of u 38.4 2.2E+02 0.0049 23.3 9.0 25 98-122 82-107 (318)
48 PF03820 Mtc: Tricarboxylate c 36.7 38 0.00082 28.0 3.0 25 108-132 46-70 (308)
49 PF12273 RCR: Chitin synthesis 35.4 31 0.00068 24.4 2.1 13 12-24 3-15 (130)
50 PF01893 UPF0058: Uncharacteri 33.0 1.4E+02 0.0031 20.2 4.9 47 77-123 9-58 (89)
51 COG2879 Uncharacterized small 31.0 40 0.00087 21.6 1.8 15 118-132 27-41 (65)
52 PF08592 DUF1772: Domain of un 30.5 1.3E+02 0.0028 20.6 4.6 27 8-34 63-89 (139)
53 PF05919 Mitovir_RNA_pol: Mito 30.0 59 0.0013 28.7 3.2 33 94-126 234-266 (498)
54 TIGR02736 cbb3_Q_epsi cytochro 28.9 79 0.0017 19.7 2.8 24 11-34 2-25 (56)
55 KOG1957 DNA topoisomerase III 28.0 38 0.00081 29.9 1.7 21 109-132 147-167 (555)
56 PF09878 DUF2105: Predicted me 27.4 55 0.0012 25.6 2.3 25 6-30 163-187 (212)
57 PF04911 ATP-synt_J: ATP synth 27.2 58 0.0013 20.1 2.0 16 9-24 9-24 (54)
58 PF11027 DUF2615: Protein of u 26.9 73 0.0016 22.2 2.7 20 70-89 54-73 (103)
59 PF00076 RRM_1: RNA recognitio 25.7 52 0.0011 19.2 1.6 20 103-122 3-22 (70)
60 PRK10613 hypothetical protein; 25.2 28 0.0006 22.8 0.3 11 111-121 64-74 (74)
61 COG0089 RplW Ribosomal protein 24.6 62 0.0013 22.2 2.0 20 103-122 25-44 (94)
62 PF10769 DUF2594: Protein of u 24.3 30 0.00064 22.7 0.3 12 110-121 63-74 (74)
63 cd01047 ACSF Aerobic Cyclase S 23.5 1.1E+02 0.0023 25.6 3.4 54 75-128 211-264 (323)
64 PF04967 HTH_10: HTH DNA bindi 23.0 39 0.00085 20.6 0.7 29 95-123 24-52 (53)
65 PF15178 TOM_sub5: Mitochondri 22.4 1.1E+02 0.0024 18.5 2.5 24 101-124 2-25 (51)
66 PF11057 Cortexin: Cortexin of 21.8 78 0.0017 21.0 1.9 27 4-32 24-50 (81)
67 COG3755 Uncharacterized protei 21.6 76 0.0016 23.0 2.0 27 104-130 42-69 (127)
68 PF10041 DUF2277: Uncharacteri 21.6 1.6E+02 0.0035 19.5 3.4 25 101-125 6-30 (78)
69 PRK13654 magnesium-protoporphy 21.5 1.1E+02 0.0023 25.9 3.1 52 75-126 231-282 (355)
70 CHL00185 ycf59 magnesium-proto 21.4 1.2E+02 0.0026 25.6 3.4 51 76-126 228-278 (351)
71 cd01804 midnolin_N Ubiquitin-l 21.0 61 0.0013 20.7 1.3 26 104-130 16-41 (78)
72 PHA02955 hypothetical protein; 20.9 92 0.002 24.5 2.5 27 8-34 176-202 (213)
73 PRK00665 petG cytochrome b6-f 20.8 86 0.0019 17.8 1.7 17 15-31 5-21 (37)
74 TIGR02029 AcsF magnesium-proto 20.7 1.3E+02 0.0028 25.3 3.4 50 76-125 222-271 (337)
75 CHL00030 rpl23 ribosomal prote 20.1 89 0.0019 21.2 2.0 20 103-122 23-42 (93)
No 1
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-42 Score=265.77 Aligned_cols=132 Identities=39% Similarity=0.712 Sum_probs=116.1
Q ss_pred CCccccCCCchHHHHHHHHhhhHHHHHHHHhhhcccccccccccCcchhhhhhhhhhhhhhhhcccccchhHHHHHHHHH
Q 032733 1 MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIFKRISNFSTCSNLSLVLLWVI 80 (135)
Q Consensus 1 ~~~~DE~g~~f~~F~lt~l~~~LiP~T~~~l~~~~~~~~~~~~c~c~~c~~~~~~~~~~~~~~~~~~~~~~~~l~~~w~~ 80 (135)
+.+|||+|++|+||+|||++++++|.||+.|++.........+|+|..|++.+++.++..++ .+++.+++++++||++
T Consensus 4 ~~eYDE~g~tf~yflls~~~~i~~P~Ty~~i~~~~~~~~~~~~c~c~~c~~~r~~~~~~~~k--~~~~~~~i~lv~~W~v 81 (230)
T KOG0721|consen 4 DYEYDESGNTFPYFLLSFLAIILLPMTYLLIPRNPEPPKRKEECQCHGCDKKRRKKAKVSPK--SISTKRKVFLVVGWAV 81 (230)
T ss_pred ccccccccCccHHHHHHHHHHHHHHHHHHHhccccchhhhhhHHhhhhhhhhhhhhcccCcc--cchhHHHHHHHHHHHH
Confidence 46899999999999999999999999999998644444667889999999887653333222 5667789999999999
Q ss_pred HHHHHHHHHhcCcccccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCCC
Q 032733 81 MIILIYYIKSTSREMQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP 134 (135)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~~ 134 (135)
+++++|.+.+++.+.+.+||||||||+++++++|||||||+|++||||||++++
T Consensus 82 ~~fL~y~i~~~~~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~ 135 (230)
T KOG0721|consen 82 IAFLIYKIMNSRRERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE 135 (230)
T ss_pred HHHHHHHHhhhhHHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc
Confidence 999999999999999999999999999999999999999999999999998764
No 2
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.95 E-value=7.2e-29 Score=207.91 Aligned_cols=124 Identities=32% Similarity=0.609 Sum_probs=104.5
Q ss_pred ccccCCCchHHHHHHHHhhhHHHHHHHHhhhcc-cccccccccCcchhhhhhhh--hhhhhhhhcccccchhHHHHHHHH
Q 032733 3 ATEENSQLFPIFILTIMALPLVPYTILKLCHAF-SKKIKTIHCQCSDCARSGKY--RKSIFKRISNFSTCSNLSLVLLWV 79 (135)
Q Consensus 3 ~~DE~g~~f~~F~lt~l~~~LiP~T~~~l~~~~-~~~~~~~~c~c~~c~~~~~~--~~~~~~~~~~~~~~~~~~l~~~w~ 79 (135)
+|||+|.+||||+|+.++++.+|+||.++-... +++.....|.|+.|..+.++ |+++ +..+++++++||+
T Consensus 6 eYDE~g~~~p~fvL~gl~~vvlpmTY~~i~gpsaSKe~~~vr~~~q~~Rpkdknv~rKSI-------f~lR~If~ivgWl 78 (610)
T COG5407 6 EYDESGLASPYFVLSGLVPVVLPMTYDLIEGPSASKELRRVRCACQGCRPKDKNVSRKSI-------FKLRKIFTIVGWL 78 (610)
T ss_pred ccccccccchHHHHhhhhheeeeeehhheeCCcccchhhcchhhhhhcCccccchhhhHH-------HhhhHHHHHHHHH
Confidence 699999999999999999999999998876553 34555677888888865443 3333 3346799999999
Q ss_pred HHHHHHHHHHhcCcc-cccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q 032733 80 IMIILIYYIKSTSRE-MQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD 133 (135)
Q Consensus 80 ~~~~l~~~~~~~~~~-~~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~ 133 (135)
+.+++.+.+.+...+ ...|||||||||+.+++++|||++||+|+.||||||.+.
T Consensus 79 ~i~~L~~~I~~~k~~~~~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~ 133 (610)
T COG5407 79 VISYLISNIRTLKIEYRRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPP 133 (610)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCC
Confidence 999999999886553 467999999999999999999999999999999999865
No 3
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.4e-15 Score=124.22 Aligned_cols=39 Identities=51% Similarity=0.918 Sum_probs=37.3
Q ss_pred ccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCCC
Q 032733 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP 134 (135)
Q Consensus 96 ~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~~ 134 (135)
...|||+||||+.+|+++|||+||||||+|+||||||++
T Consensus 14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpdd 52 (336)
T KOG0713|consen 14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDD 52 (336)
T ss_pred cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC
Confidence 468999999999999999999999999999999999986
No 4
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.40 E-value=2.5e-13 Score=83.12 Aligned_cols=35 Identities=60% Similarity=1.095 Sum_probs=33.8
Q ss_pred CcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q 032733 99 EPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD 133 (135)
Q Consensus 99 d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~ 133 (135)
|||++|||+++++.++||++||+|++++|||++++
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~ 35 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPD 35 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC
Confidence 79999999999999999999999999999999875
No 5
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.36 E-value=7.1e-13 Score=82.57 Aligned_cols=36 Identities=53% Similarity=0.937 Sum_probs=34.2
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q 032733 98 FEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD 133 (135)
Q Consensus 98 ~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~ 133 (135)
.|||+||||+++++.++||++||++++++|||++++
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~ 36 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPG 36 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC
Confidence 389999999999999999999999999999999974
No 6
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.36 E-value=5.2e-13 Score=84.50 Aligned_cols=36 Identities=67% Similarity=1.043 Sum_probs=33.9
Q ss_pred CcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCCC
Q 032733 99 EPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP 134 (135)
Q Consensus 99 d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~~ 134 (135)
|||+||||+++++.+|||++||++++++|||+++.+
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~ 36 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGD 36 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTST
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhh
Confidence 689999999999999999999999999999998654
No 7
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.35 E-value=3.8e-13 Score=113.73 Aligned_cols=38 Identities=42% Similarity=0.699 Sum_probs=35.8
Q ss_pred ccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q 032733 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD 133 (135)
Q Consensus 96 ~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~ 133 (135)
...|+|+||||+++||.+|||+|||+||++||||||++
T Consensus 26 ~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~ 63 (421)
T PTZ00037 26 DNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD 63 (421)
T ss_pred cchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch
Confidence 35799999999999999999999999999999999975
No 8
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.32 E-value=6.2e-13 Score=94.61 Aligned_cols=47 Identities=28% Similarity=0.454 Sum_probs=41.0
Q ss_pred HHhcCcccccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCCC
Q 032733 88 IKSTSREMQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP 134 (135)
Q Consensus 88 ~~~~~~~~~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~~ 134 (135)
...++..++..++|+||||++++|.+|||++||+|++++|||+++++
T Consensus 55 ~~~f~~~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~ 101 (116)
T PTZ00100 55 LKGFENPMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGST 101 (116)
T ss_pred cccccCCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH
Confidence 34455566678999999999999999999999999999999998764
No 9
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.30 E-value=1.6e-12 Score=108.97 Aligned_cols=37 Identities=43% Similarity=0.700 Sum_probs=35.2
Q ss_pred cCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q 032733 97 VFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD 133 (135)
Q Consensus 97 ~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~ 133 (135)
..|+|+||||+++|+++|||+|||+||++||||||++
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~ 44 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPG 44 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC
Confidence 3699999999999999999999999999999999974
No 10
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.25 E-value=4.6e-12 Score=106.10 Aligned_cols=37 Identities=41% Similarity=0.785 Sum_probs=35.1
Q ss_pred cCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q 032733 97 VFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD 133 (135)
Q Consensus 97 ~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~ 133 (135)
..|||+||||+++|+++|||+|||+|+++||||+|++
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~ 44 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKG 44 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCC
Confidence 3699999999999999999999999999999999975
No 11
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.4e-11 Score=104.34 Aligned_cols=39 Identities=51% Similarity=0.912 Sum_probs=36.3
Q ss_pred ccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCCC
Q 032733 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP 134 (135)
Q Consensus 96 ~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~~ 134 (135)
...++||||||..+|++.|||++||+|||+|||||||+.
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ 44 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDR 44 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCcc
Confidence 346899999999999999999999999999999999874
No 12
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.7e-11 Score=97.86 Aligned_cols=38 Identities=47% Similarity=0.894 Sum_probs=36.4
Q ss_pred ccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q 032733 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD 133 (135)
Q Consensus 96 ~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~ 133 (135)
...|.|++||++++|+.++|||+||+|++++|||++||
T Consensus 29 ~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd 66 (279)
T KOG0716|consen 29 IRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGD 66 (279)
T ss_pred chhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCC
Confidence 46899999999999999999999999999999999998
No 13
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=2.9e-11 Score=97.92 Aligned_cols=37 Identities=41% Similarity=0.728 Sum_probs=35.2
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCCC
Q 032733 98 FEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP 134 (135)
Q Consensus 98 ~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~~ 134 (135)
.|||+||||+++|+.+|||+||++|+++||||.|.++
T Consensus 43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~ 79 (288)
T KOG0715|consen 43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK 79 (288)
T ss_pred cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc
Confidence 4999999999999999999999999999999999875
No 14
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.5e-11 Score=95.39 Aligned_cols=36 Identities=42% Similarity=0.823 Sum_probs=34.3
Q ss_pred cCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCC
Q 032733 97 VFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNP 132 (135)
Q Consensus 97 ~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~ 132 (135)
..|||+||||..+|++++|++|||+|++++||||++
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~ 48 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNH 48 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcch
Confidence 359999999999999999999999999999999995
No 15
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=5.4e-11 Score=94.79 Aligned_cols=40 Identities=40% Similarity=0.693 Sum_probs=37.4
Q ss_pred ccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCC
Q 032733 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPG 135 (135)
Q Consensus 96 ~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~~~ 135 (135)
...|.|++|||+++++..||.+|||+||++||||+++++|
T Consensus 31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e 70 (329)
T KOG0722|consen 31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPE 70 (329)
T ss_pred cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCch
Confidence 4579999999999999999999999999999999998865
No 16
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.08 E-value=9e-11 Score=94.05 Aligned_cols=37 Identities=35% Similarity=0.675 Sum_probs=34.6
Q ss_pred ccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCC
Q 032733 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNP 132 (135)
Q Consensus 96 ~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~ 132 (135)
...|+|+||||++++|.+|||+|||+|+++|||||+.
T Consensus 198 ~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~ 234 (267)
T PRK09430 198 TLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLV 234 (267)
T ss_pred cHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCC
Confidence 3479999999999999999999999999999999964
No 17
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.03 E-value=2e-10 Score=104.56 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=36.3
Q ss_pred ccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCCC
Q 032733 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP 134 (135)
Q Consensus 96 ~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~~ 134 (135)
...++|+||||+++|+.+|||+|||+||++|||||++++
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~ 609 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN 609 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence 357999999999999999999999999999999999864
No 18
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=3.1e-10 Score=87.64 Aligned_cols=38 Identities=53% Similarity=0.927 Sum_probs=36.4
Q ss_pred cCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCCC
Q 032733 97 VFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP 134 (135)
Q Consensus 97 ~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~~ 134 (135)
.-|||++|+|+|..+.++||+.||+||+.-|||||+|+
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd 89 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDD 89 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCccc
Confidence 46999999999999999999999999999999999986
No 19
>PHA02624 large T antigen; Provisional
Probab=98.88 E-value=8.2e-10 Score=97.01 Aligned_cols=38 Identities=39% Similarity=0.544 Sum_probs=35.6
Q ss_pred cCCcchhccCCCCC--CHHHHHHHHHHHHHhhCCCCCCCC
Q 032733 97 VFEPFSILGLEHGA--SDSDIKKAYRRLSIQYHPDKNPDP 134 (135)
Q Consensus 97 ~~d~y~iLgv~~~a--s~~eIkkaYRkLs~k~HPDK~~~~ 134 (135)
..++|++|||+++| +.+|||+|||+++++|||||++++
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGde 49 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDE 49 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcH
Confidence 46899999999999 999999999999999999998874
No 20
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.87 E-value=9.6e-10 Score=91.43 Aligned_cols=40 Identities=38% Similarity=0.649 Sum_probs=37.0
Q ss_pred cccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCCC
Q 032733 95 MQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP 134 (135)
Q Consensus 95 ~~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~~ 134 (135)
...+|+|.||||.++|+..||-||||+|+.+||||-..|.
T Consensus 391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdE 430 (504)
T KOG0624|consen 391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDE 430 (504)
T ss_pred hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCH
Confidence 4568999999999999999999999999999999987764
No 21
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.3e-09 Score=91.24 Aligned_cols=41 Identities=49% Similarity=0.859 Sum_probs=37.3
Q ss_pred cccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCC
Q 032733 95 MQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPG 135 (135)
Q Consensus 95 ~~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~~~ 135 (135)
..+.|.|.+|||+++||++|||+|||++++.|||||-.||+
T Consensus 6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd 46 (546)
T KOG0718|consen 6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPD 46 (546)
T ss_pred cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChh
Confidence 34569999999999999999999999999999999988764
No 22
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=3.7e-08 Score=68.94 Aligned_cols=50 Identities=30% Similarity=0.476 Sum_probs=44.8
Q ss_pred HHHHHhcCcccccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCCC
Q 032733 85 IYYIKSTSREMQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP 134 (135)
Q Consensus 85 ~~~~~~~~~~~~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~~ 134 (135)
.|+-..++..+...+.-.||||+++++.+.||.|.|+.++.+|||++|+|
T Consensus 43 ~~y~GGF~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP 92 (112)
T KOG0723|consen 43 AFYKGGFEPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP 92 (112)
T ss_pred hhhhcccccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH
Confidence 34456677788888999999999999999999999999999999999986
No 23
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=2.1e-08 Score=84.67 Aligned_cols=38 Identities=47% Similarity=0.773 Sum_probs=35.5
Q ss_pred ccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q 032733 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD 133 (135)
Q Consensus 96 ~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~ 133 (135)
+..|+|.||||+.++++.|||+|||++++.||||++..
T Consensus 371 kRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ag 408 (486)
T KOG0550|consen 371 KRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAG 408 (486)
T ss_pred hhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcc
Confidence 46899999999999999999999999999999999853
No 24
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=6.1e-08 Score=82.39 Aligned_cols=39 Identities=44% Similarity=0.787 Sum_probs=36.1
Q ss_pred ccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCCC
Q 032733 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP 134 (135)
Q Consensus 96 ~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~~ 134 (135)
+..|+|++|||..++++++|||.||++|..-|||||-.|
T Consensus 233 ~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~ 271 (490)
T KOG0720|consen 233 NILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIP 271 (490)
T ss_pred cCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCCh
Confidence 468999999999999999999999999999999999643
No 25
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=2e-06 Score=79.72 Aligned_cols=40 Identities=35% Similarity=0.639 Sum_probs=34.0
Q ss_pred ccccCCcchhccCCCC---CCH-HHHHHHHHHHHHhhCCCCCCC
Q 032733 94 EMQVFEPFSILGLEHG---ASD-SDIKKAYRRLSIQYHPDKNPD 133 (135)
Q Consensus 94 ~~~~~d~y~iLgv~~~---as~-~eIkkaYRkLs~k~HPDK~~~ 133 (135)
.+...+.|+||+|+.+ .++ +.||++|++|+.+|||||||+
T Consensus 1277 ~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE 1320 (2235)
T KOG1789|consen 1277 TMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE 1320 (2235)
T ss_pred ccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch
Confidence 4567899999999854 233 789999999999999999986
No 26
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=4.4e-05 Score=60.71 Aligned_cols=38 Identities=37% Similarity=0.768 Sum_probs=35.3
Q ss_pred ccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q 032733 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD 133 (135)
Q Consensus 96 ~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~ 133 (135)
.....|.||||..+++.+|++.||.+|++++|||.+.+
T Consensus 45 ~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~ 82 (342)
T KOG0568|consen 45 KIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE 82 (342)
T ss_pred HHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc
Confidence 45789999999999999999999999999999999865
No 27
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=97.47 E-value=0.00015 Score=54.98 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCC
Q 032733 109 GASDSDIKKAYRRLSIQYHPDKNPD 133 (135)
Q Consensus 109 ~as~~eIkkaYRkLs~k~HPDK~~~ 133 (135)
+++..+|+++||+|++++|||+++.
T Consensus 19 ~~d~~~L~~~yr~lq~~~HPD~~~~ 43 (176)
T PRK03578 19 ALDEAALDAAYRTVQAQVHPDRFAA 43 (176)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCC
Confidence 4689999999999999999999753
No 28
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=97.01 E-value=0.0004 Score=50.28 Aligned_cols=40 Identities=28% Similarity=0.368 Sum_probs=29.5
Q ss_pred ccccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q 032733 94 EMQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD 133 (135)
Q Consensus 94 ~~~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~ 133 (135)
.++.....+||||++..+.++|.+.|.+|...++|+|+|+
T Consensus 54 ~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS 93 (127)
T PF03656_consen 54 GMTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGS 93 (127)
T ss_dssp ---HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-
T ss_pred CCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC
Confidence 3455688999999999999999999999999999999986
No 29
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.00064 Score=51.18 Aligned_cols=34 Identities=44% Similarity=0.689 Sum_probs=32.8
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCC
Q 032733 98 FEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKN 131 (135)
Q Consensus 98 ~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~ 131 (135)
.|+|.+||+...++..+|+++||++...+|||+.
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a 146 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKA 146 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHH
Confidence 6999999999999999999999999999999984
No 30
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.0018 Score=52.69 Aligned_cols=42 Identities=29% Similarity=0.501 Sum_probs=36.3
Q ss_pred hcCcccccCCcchhccCCC---CCCHHHHHHHHHHHHHhhCCCCC
Q 032733 90 STSREMQVFEPFSILGLEH---GASDSDIKKAYRRLSIQYHPDKN 131 (135)
Q Consensus 90 ~~~~~~~~~d~y~iLgv~~---~as~~eIkkaYRkLs~k~HPDK~ 131 (135)
.-..+.+..|.|.+||++. .++..+|.++.++.+.+||||+.
T Consensus 35 ~d~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~ 79 (379)
T COG5269 35 EDFKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKT 79 (379)
T ss_pred hhhhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccch
Confidence 3345667789999999984 68899999999999999999996
No 31
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=95.21 E-value=0.013 Score=50.49 Aligned_cols=30 Identities=33% Similarity=0.539 Sum_probs=25.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q 032733 104 LGLEHGASDSDIKKAYRRLSIQYHPDKNPD 133 (135)
Q Consensus 104 Lgv~~~as~~eIkkaYRkLs~k~HPDK~~~ 133 (135)
.++..=.+.++|||||||..+..||||.+.
T Consensus 394 VsltDLVtp~~VKKaYrKA~L~VHPDKlqq 423 (453)
T KOG0431|consen 394 VSLTDLVTPAQVKKAYRKAVLCVHPDKLQQ 423 (453)
T ss_pred CchhhccCHHHHHHHHHhhhheeCcccccC
Confidence 455566789999999999999999999754
No 32
>PF13446 RPT: A repeated domain in UCH-protein
Probab=92.54 E-value=0.11 Score=32.36 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=25.1
Q ss_pred cCCcchhccCCCCCCHHHHHHHHHHHHH
Q 032733 97 VFEPFSILGLEHGASDSDIKKAYRRLSI 124 (135)
Q Consensus 97 ~~d~y~iLgv~~~as~~eIkkaYRkLs~ 124 (135)
..+.|++|||+++.++..|-.+|+....
T Consensus 4 ~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 4 VEEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999988776
No 33
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.48 E-value=0.27 Score=35.58 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=34.4
Q ss_pred ccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q 032733 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD 133 (135)
Q Consensus 96 ~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~ 133 (135)
+....-+||+|++..+.+||.+.|-+|-..+++.|+|+
T Consensus 57 TlqEa~qILnV~~~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 57 TLQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred cHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcc
Confidence 44678899999999999999999999999999998875
No 34
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.94 E-value=2.1 Score=28.14 Aligned_cols=15 Identities=27% Similarity=0.667 Sum_probs=10.6
Q ss_pred ccccCc-chhhhhhhh
Q 032733 41 TIHCQC-SDCARSGKY 55 (135)
Q Consensus 41 ~~~c~c-~~c~~~~~~ 55 (135)
.+.|.| .+|+..+++
T Consensus 42 ~K~CdC~~pCDt~~~k 57 (77)
T COG2991 42 EKVCDCDEPCDTHKKK 57 (77)
T ss_pred chhcCCCCchHHHHHh
Confidence 577888 569876554
No 35
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=67.08 E-value=6.2 Score=27.07 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=26.3
Q ss_pred ccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCC
Q 032733 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDK 130 (135)
Q Consensus 96 ~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK 130 (135)
....||.||-++..+|.++|-++=-..|.+-|||-
T Consensus 9 s~dqP~~il~a~~~STa~Dvi~Qal~KA~rs~~~~ 43 (93)
T cd01780 9 SPDQPYAILRAPRVSTAQDVIQQTLCKARRSNPNP 43 (93)
T ss_pred CCCCCeeEEEccccccHHHHHHHHHHHhccCCCCc
Confidence 45789999999999998887766555555556653
No 36
>PF03579 SHP: Small hydrophobic protein; InterPro: IPR005327 The small hydrophobic integral membrane protein, SH (previously designated 1A) is found to have a variety of glycosylated forms [, ]. This protein is a component of the mature respiratory syncytial virion [] where it may form complexes and appears to play a structural role.; GO: 0016020 membrane, 0016021 integral to membrane, 0048222 glycoprotein network
Probab=65.66 E-value=9.5 Score=24.05 Aligned_cols=21 Identities=24% Similarity=0.391 Sum_probs=15.3
Q ss_pred cCCCchHHHHHHHHhhhHHHH
Q 032733 6 ENSQLFPIFILTIMALPLVPY 26 (135)
Q Consensus 6 E~g~~f~~F~lt~l~~~LiP~ 26 (135)
-+|.+|+||.+.++.+.++-+
T Consensus 10 FtskFW~YFtLi~M~lti~~~ 30 (64)
T PF03579_consen 10 FTSKFWTYFTLIFMMLTIGFF 30 (64)
T ss_pred eccccchHHHHHHHHHHHHHH
Confidence 468899999888776654433
No 37
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=57.73 E-value=17 Score=25.40 Aligned_cols=30 Identities=20% Similarity=0.108 Sum_probs=26.2
Q ss_pred ccCCCchHHHHHHHHhhhHHHHHHHHhhhc
Q 032733 5 EENSQLFPIFILTIMALPLVPYTILKLCHA 34 (135)
Q Consensus 5 DE~g~~f~~F~lt~l~~~LiP~T~~~l~~~ 34 (135)
|=|.++|.++-.|+++++++-..|.+|+..
T Consensus 63 DvS~~F~L~~~~ti~lv~~~~~~I~lL~sv 92 (103)
T PF12955_consen 63 DVSVPFWLFAGFTIALVVLVAGAIGLLFSV 92 (103)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 667889999999999999999999999765
No 38
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=54.13 E-value=11 Score=25.09 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=25.4
Q ss_pred CcchhccCCCCCCHHHHHHHH----HHHHHhhCCCCC
Q 032733 99 EPFSILGLEHGASDSDIKKAY----RRLSIQYHPDKN 131 (135)
Q Consensus 99 d~y~iLgv~~~as~~eIkkaY----RkLs~k~HPDK~ 131 (135)
|--++.|.++.++..||+.|- ||+|-..||.+.
T Consensus 4 NIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~ 40 (88)
T COG5552 4 NIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAA 40 (88)
T ss_pred chHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchh
Confidence 445678999999999999875 566666788663
No 39
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=49.46 E-value=20 Score=19.10 Aligned_cols=16 Identities=25% Similarity=0.600 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhhCC
Q 032733 113 SDIKKAYRRLSIQYHP 128 (135)
Q Consensus 113 ~eIkkaYRkLs~k~HP 128 (135)
.+.|.+-|+.++.||-
T Consensus 11 ~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 11 EDKRAQLRQAALEYHE 26 (28)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 6778899999999994
No 40
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=44.27 E-value=46 Score=19.02 Aligned_cols=21 Identities=10% Similarity=0.051 Sum_probs=15.9
Q ss_pred chHHHHHHHHhhhHHHHHHHH
Q 032733 10 LFPIFILTIMALPLVPYTILK 30 (135)
Q Consensus 10 ~f~~F~lt~l~~~LiP~T~~~ 30 (135)
.|..|.++++.++++-+.|.+
T Consensus 15 ~Wi~F~l~mi~vFi~li~ytl 35 (38)
T PF09125_consen 15 GWIAFALAMILVFIALIGYTL 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 388999998888777666554
No 41
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=43.26 E-value=45 Score=23.25 Aligned_cols=29 Identities=10% Similarity=0.217 Sum_probs=20.9
Q ss_pred ccccCCCchHHHHHHHHhhhHHHHHHHHh
Q 032733 3 ATEENSQLFPIFILTIMALPLVPYTILKL 31 (135)
Q Consensus 3 ~~DE~g~~f~~F~lt~l~~~LiP~T~~~l 31 (135)
...++|.+|+|.|..+++.+.+-+.|.+.
T Consensus 9 ~~~~~g~sW~~LVGVv~~al~~SlLIala 37 (102)
T PF15176_consen 9 GPGEGGRSWPFLVGVVVTALVTSLLIALA 37 (102)
T ss_pred CCCCCCcccHhHHHHHHHHHHHHHHHHHH
Confidence 35678999999988777666665555554
No 42
>TIGR03778 VPDSG_CTERM VPDSG-CTERM exosortase interaction domain. Through in silico analysis, we previously described the PEP-CTERM/exosortase system (PubMed:16930487). This model describes a PEP-CTERM-like variant C-terminal protein sorting signal, as found at the C-terminus of twenty otherwise unrelated proteins in Verrucomicrobiae bacterium DG1235. The variant motif, VPDSG, seems an intermediate between the VPEP motif (TIGR02595) of typical exosortase systems and the classical LPXTG of sortase in Gram-positive bacteria.
Probab=43.18 E-value=29 Score=18.33 Aligned_cols=19 Identities=11% Similarity=0.240 Sum_probs=13.7
Q ss_pred cCCCchHHHHHHHHhhhHH
Q 032733 6 ENSQLFPIFILTIMALPLV 24 (135)
Q Consensus 6 E~g~~f~~F~lt~l~~~Li 24 (135)
+||+++..+.+++++++.+
T Consensus 3 DsGST~~Ll~~~l~~l~~~ 21 (26)
T TIGR03778 3 DSGSTLALLGLGLLGLLGL 21 (26)
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 5788888887777766543
No 43
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=42.57 E-value=39 Score=31.22 Aligned_cols=19 Identities=21% Similarity=0.516 Sum_probs=13.1
Q ss_pred HHHHHHhhhHHHHHHHHhh
Q 032733 14 FILTIMALPLVPYTILKLC 32 (135)
Q Consensus 14 F~lt~l~~~LiP~T~~~l~ 32 (135)
.++.++.++++|++-.+++
T Consensus 97 ~~i~ll~~il~P~vg~~fC 115 (806)
T PF05478_consen 97 AVIGLLFIILMPLVGLCFC 115 (806)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3556666678888877664
No 44
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=38.62 E-value=34 Score=26.79 Aligned_cols=51 Identities=14% Similarity=0.281 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccc---cCCcchhccCCCC---------CCHHHHHHHHHHH
Q 032733 72 LSLVLLWVIMIILIYYIKSTSREMQ---VFEPFSILGLEHG---------ASDSDIKKAYRRL 122 (135)
Q Consensus 72 ~~l~~~w~~~~~l~~~~~~~~~~~~---~~d~y~iLgv~~~---------as~~eIkkaYRkL 122 (135)
++.+.+|.+...+.........+.+ ....|..+-+..+ ...+|-|+|+|++
T Consensus 194 ~i~i~~w~~s~~~~~v~~~~~~~~~~~~~i~~~~~i~v~~~~s~~ffV~~~~S~EYR~af~~~ 256 (257)
T PF10320_consen 194 IIFIFSWFLSQIINTVSLALGLDGETIAIIQMYAGIFVNISYSQNFFVYYWRSSEYRKAFREL 256 (257)
T ss_pred eeeeHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHheEEEEcCHHHHHHHHHh
Confidence 4556789887776655443333221 1233333333322 2467788888875
No 45
>KOG3767 consensus Sideroflexin [General function prediction only]
Probab=38.52 E-value=33 Score=28.60 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=26.6
Q ss_pred cchhccCCCCCCHHHHHHHHHHHHHhhCCCCCC
Q 032733 100 PFSILGLEHGASDSDIKKAYRRLSIQYHPDKNP 132 (135)
Q Consensus 100 ~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~ 132 (135)
-|+-=.++++.+++|+-+|-+...-.+|||.+.
T Consensus 56 ~yk~G~~~p~~t~~~lW~Akkl~dS~~HPDTgE 88 (328)
T KOG3767|consen 56 DYKAGKVPPGLTDDELWKAKKLYDSTFHPDTGE 88 (328)
T ss_pred hhccCCcCCCCcHHHHHHHHHHHhcccCCCCCC
Confidence 344445677789999999999999999999863
No 46
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=38.51 E-value=93 Score=24.41 Aligned_cols=29 Identities=14% Similarity=0.254 Sum_probs=25.0
Q ss_pred ccccCCCchHHHHHHHHhhhHHHHHHHHh
Q 032733 3 ATEENSQLFPIFILTIMALPLVPYTILKL 31 (135)
Q Consensus 3 ~~DE~g~~f~~F~lt~l~~~LiP~T~~~l 31 (135)
+.||+|..-.++++.++.+++.+..+...
T Consensus 22 S~de~gi~~~~~~~~~~y~vl~~~~~~~~ 50 (257)
T PF10192_consen 22 SADEQGILEIYLLFLLLYIVLSIISIYSI 50 (257)
T ss_pred ChhhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999988888888877666
No 47
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=38.42 E-value=2.2e+02 Score=23.34 Aligned_cols=25 Identities=28% Similarity=0.203 Sum_probs=14.2
Q ss_pred CCcchhccCCC-CCCHHHHHHHHHHH
Q 032733 98 FEPFSILGLEH-GASDSDIKKAYRRL 122 (135)
Q Consensus 98 ~d~y~iLgv~~-~as~~eIkkaYRkL 122 (135)
.+-++-||++. ..+.+|+++--+.+
T Consensus 82 ~pl~~~l~l~~~~~~~~eL~~l~~~l 107 (318)
T PF12725_consen 82 PPLSERLGLETEEYSTEELKELTEYL 107 (318)
T ss_pred cCHHHHcCCCCCCCCHHHHHHHHHHH
Confidence 45556666665 56666665544443
No 48
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=36.71 E-value=38 Score=27.97 Aligned_cols=25 Identities=28% Similarity=0.520 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCC
Q 032733 108 HGASDSDIKKAYRRLSIQYHPDKNP 132 (135)
Q Consensus 108 ~~as~~eIkkaYRkLs~k~HPDK~~ 132 (135)
++.+++|+-+|-+..--.+|||.+.
T Consensus 46 ~~~~~~~lw~Ak~l~~Sa~HPDTge 70 (308)
T PF03820_consen 46 PGLTDDELWKAKKLYDSAFHPDTGE 70 (308)
T ss_pred CCCCHHHHHHHHHHhhcccCCCCCC
Confidence 3569999999999999999999863
No 49
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=35.36 E-value=31 Score=24.35 Aligned_cols=13 Identities=31% Similarity=0.565 Sum_probs=5.4
Q ss_pred HHHHHHHHhhhHH
Q 032733 12 PIFILTIMALPLV 24 (135)
Q Consensus 12 ~~F~lt~l~~~Li 24 (135)
.+|++-+++++|+
T Consensus 3 ~l~~iii~~i~l~ 15 (130)
T PF12273_consen 3 VLFAIIIVAILLF 15 (130)
T ss_pred eeHHHHHHHHHHH
Confidence 3444444444333
No 50
>PF01893 UPF0058: Uncharacterised protein family UPF0058; InterPro: IPR002753 These archaebacterial proteins have no known function. Members of the family are about 90-105 amino acid residues long.; PDB: 2GF4_B.
Probab=33.02 E-value=1.4e+02 Score=20.18 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhcCcccccCCcchhccCCCCC---CHHHHHHHHHHHH
Q 032733 77 LWVIMIILIYYIKSTSREMQVFEPFSILGLEHGA---SDSDIKKAYRRLS 123 (135)
Q Consensus 77 ~w~~~~~l~~~~~~~~~~~~~~d~y~iLgv~~~a---s~~eIkkaYRkLs 123 (135)
+..+++.+.-++.........++.|+-|||+|.. +..|=|.|-.-|+
T Consensus 9 LH~lL~~v~~~~e~~~~~~~~~~~Y~~L~i~P~hIHksK~eHK~AIF~L~ 58 (89)
T PF01893_consen 9 LHQLLVEVKKYFEEENNDEEDFEEYEELGISPHHIHKSKTEHKAAIFLLG 58 (89)
T ss_dssp HHHHHHHHHHHHHTTT--TTTTHHHHHH---TT-TTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCccchhHHHHcCCCcchhcCCHHHHHHHHHHHH
Confidence 3344444444443333344679999999999974 5555565554443
No 51
>COG2879 Uncharacterized small protein [Function unknown]
Probab=31.05 E-value=40 Score=21.56 Aligned_cols=15 Identities=40% Similarity=0.618 Sum_probs=11.6
Q ss_pred HHHHHHHhhCCCCCC
Q 032733 118 AYRRLSIQYHPDKNP 132 (135)
Q Consensus 118 aYRkLs~k~HPDK~~ 132 (135)
-|-+-+++.|||+-+
T Consensus 27 nYVehmr~~hPd~p~ 41 (65)
T COG2879 27 NYVEHMRKKHPDKPP 41 (65)
T ss_pred HHHHHHHHhCcCCCc
Confidence 466778899999854
No 52
>PF08592 DUF1772: Domain of unknown function (DUF1772); InterPro: IPR013901 This entry represents proteins of unknown function.
Probab=30.49 E-value=1.3e+02 Score=20.60 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=18.0
Q ss_pred CCchHHHHHHHHhhhHHHHHHHHhhhc
Q 032733 8 SQLFPIFILTIMALPLVPYTILKLCHA 34 (135)
Q Consensus 8 g~~f~~F~lt~l~~~LiP~T~~~l~~~ 34 (135)
.....+.+...+.+-.+|+|+...-+.
T Consensus 63 ~~~~~~~~a~~~~~~~~~~T~~~~~P~ 89 (139)
T PF08592_consen 63 AARLLWLAAAALLLSIIPFTFLVNVPI 89 (139)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 334445555556667999999986554
No 53
>PF05919 Mitovir_RNA_pol: Mitovirus RNA-dependent RNA polymerase; InterPro: IPR008686 This family consists of several Mitovirus RNA-dependent RNA polymerase proteins. The family also contains fragment matches in the mitochondria of Arabidopsis thaliana [].
Probab=29.95 E-value=59 Score=28.71 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=28.8
Q ss_pred ccccCCcchhccCCCCCCHHHHHHHHHHHHHhh
Q 032733 94 EMQVFEPFSILGLEHGASDSDIKKAYRRLSIQY 126 (135)
Q Consensus 94 ~~~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~ 126 (135)
....++-|.|||=|--..+++|-+.|..++...
T Consensus 234 ~~~~f~~Y~iLGDDivi~~~~vA~~Y~~~m~~L 266 (498)
T PF05919_consen 234 GGSRFTDYIILGDDIVIANDKVAKQYLSIMTDL 266 (498)
T ss_pred ccCCCCceEEEcCcEEEcCHHHHHHHHHHHHHc
Confidence 446799999999999999999999999988764
No 54
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=28.95 E-value=79 Score=19.67 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=16.1
Q ss_pred hHHHHHHHHhhhHHHHHHHHhhhc
Q 032733 11 FPIFILTIMALPLVPYTILKLCHA 34 (135)
Q Consensus 11 f~~F~lt~l~~~LiP~T~~~l~~~ 34 (135)
+.||++++++++++---++-+++.
T Consensus 2 y~yf~~ti~lvv~LYgY~yhLYrs 25 (56)
T TIGR02736 2 YAYFAFTLLLVIFLYAYIYHLYRS 25 (56)
T ss_pred cchHHHHHHHHHHHHHHHHHhhhh
Confidence 457777777777776666666654
No 55
>KOG1957 consensus DNA topoisomerase III beta [Replication, recombination and repair]
Probab=27.99 E-value=38 Score=29.87 Aligned_cols=21 Identities=48% Similarity=0.765 Sum_probs=17.9
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCC
Q 032733 109 GASDSDIKKAYRRLSIQYHPDKNP 132 (135)
Q Consensus 109 ~as~~eIkkaYRkLs~k~HPDK~~ 132 (135)
..++++|++|++.|. |||.|-
T Consensus 147 aitekdi~~am~~lg---~p~~ne 167 (555)
T KOG1957|consen 147 AITEKDIKKAMRNLG---EPDQNE 167 (555)
T ss_pred cccHHHHHHHHHhcC---CCCcch
Confidence 468999999999886 888874
No 56
>PF09878 DUF2105: Predicted membrane protein (DUF2105); InterPro: IPR019212 This entry represents a protein found in various hypothetical archaeal proteins, has no known function.
Probab=27.40 E-value=55 Score=25.59 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=21.3
Q ss_pred cCCCchHHHHHHHHhhhHHHHHHHH
Q 032733 6 ENSQLFPIFILTIMALPLVPYTILK 30 (135)
Q Consensus 6 E~g~~f~~F~lt~l~~~LiP~T~~~ 30 (135)
-||-+|.++++.|+.+++.|--+..
T Consensus 163 ~SGiaWalWi~gF~~Ff~~P~~Wl~ 187 (212)
T PF09878_consen 163 VSGIAWALWIAGFIGFFLFPQYWLL 187 (212)
T ss_pred hhhHHHHHHHHHHHHHHHhHHHHHH
Confidence 3799999999999999999965443
No 57
>PF04911 ATP-synt_J: ATP synthase j chain; InterPro: IPR006995 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit J found in the F0 complex of F-ATPases from fungal mitochondria. This subunit does not appear to display sequence similarity with subunits of F-ATPases found in other organisms []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o)
Probab=27.20 E-value=58 Score=20.15 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=11.4
Q ss_pred CchHHHHHHHHhhhHH
Q 032733 9 QLFPIFILTIMALPLV 24 (135)
Q Consensus 9 ~~f~~F~lt~l~~~Li 24 (135)
-+||||+.+.+..++|
T Consensus 9 P~wPFf~ag~iv~ygv 24 (54)
T PF04911_consen 9 PMWPFFAAGAIVYYGV 24 (54)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3789999886655544
No 58
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=26.93 E-value=73 Score=22.22 Aligned_cols=20 Identities=20% Similarity=0.835 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 032733 70 SNLSLVLLWVIMIILIYYIK 89 (135)
Q Consensus 70 ~~~~l~~~w~~~~~l~~~~~ 89 (135)
..+++.++|++++++.|.+.
T Consensus 54 ~~~~~~~~w~~~A~~ly~~R 73 (103)
T PF11027_consen 54 SMFMMMMLWMVLAMALYLLR 73 (103)
T ss_pred cHHHHHHHHHHHHHHHHHcC
Confidence 34778889999999999874
No 59
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=25.68 E-value=52 Score=19.24 Aligned_cols=20 Identities=5% Similarity=0.350 Sum_probs=16.5
Q ss_pred hccCCCCCCHHHHHHHHHHH
Q 032733 103 ILGLEHGASDSDIKKAYRRL 122 (135)
Q Consensus 103 iLgv~~~as~~eIkkaYRkL 122 (135)
|=||++++++++|+..+.+.
T Consensus 3 v~nlp~~~t~~~l~~~f~~~ 22 (70)
T PF00076_consen 3 VGNLPPDVTEEELRDFFSQF 22 (70)
T ss_dssp EESETTTSSHHHHHHHHHTT
T ss_pred EcCCCCcCCHHHHHHHHHHh
Confidence 34789999999999988764
No 60
>PRK10613 hypothetical protein; Provisional
Probab=25.20 E-value=28 Score=22.82 Aligned_cols=11 Identities=45% Similarity=0.748 Sum_probs=9.4
Q ss_pred CHHHHHHHHHH
Q 032733 111 SDSDIKKAYRR 121 (135)
Q Consensus 111 s~~eIkkaYRk 121 (135)
+.++||.+||+
T Consensus 64 Tv~QIK~aYRq 74 (74)
T PRK10613 64 TVKQIKQAYRQ 74 (74)
T ss_pred HHHHHHHHhcC
Confidence 67899999995
No 61
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=24.56 E-value=62 Score=22.19 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=17.7
Q ss_pred hccCCCCCCHHHHHHHHHHH
Q 032733 103 ILGLEHGASDSDIKKAYRRL 122 (135)
Q Consensus 103 iLgv~~~as~~eIkkaYRkL 122 (135)
++.|+++|+..|||+|-.++
T Consensus 25 vF~V~~~AtK~~IK~AvE~l 44 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEEL 44 (94)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 57899999999999998766
No 62
>PF10769 DUF2594: Protein of unknown function (DUF2594); InterPro: IPR019705 This entry represents proteins with unknown function and appear to be restricted to Enterobacteriaceae.
Probab=24.27 E-value=30 Score=22.69 Aligned_cols=12 Identities=42% Similarity=0.614 Sum_probs=9.8
Q ss_pred CCHHHHHHHHHH
Q 032733 110 ASDSDIKKAYRR 121 (135)
Q Consensus 110 as~~eIkkaYRk 121 (135)
.+.++||.+||+
T Consensus 63 nTi~QIK~aYRq 74 (74)
T PF10769_consen 63 NTIKQIKTAYRQ 74 (74)
T ss_pred HHHHHHHHHhcC
Confidence 367899999995
No 63
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=23.48 E-value=1.1e+02 Score=25.60 Aligned_cols=54 Identities=19% Similarity=0.316 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhcCcccccCCcchhccCCCCCCHHHHHHHHHHHHHhhCC
Q 032733 75 VLLWVIMIILIYYIKSTSREMQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHP 128 (135)
Q Consensus 75 ~~~w~~~~~l~~~~~~~~~~~~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HP 128 (135)
.-.|+=+.+++.+..-.....+..+.|+.||+++.-=+.++-+.=.+.|.+--|
T Consensus 211 ~kLW~RFFLlsVfaTmyl~d~~R~~Fy~alGld~~~yD~~Vi~~Tn~~s~rvFP 264 (323)
T cd01047 211 NKLWIRFFLLSVYATMYLNDHQRPDFYEALGLDTTEFDMHVIRETNETAARVFP 264 (323)
T ss_pred HHHHHHHHHHHHHHhheeeccchHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCC
Confidence 345665656665555555566778999999999865444443333344444333
No 64
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=22.97 E-value=39 Score=20.57 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=23.4
Q ss_pred cccCCcchhccCCCCCCHHHHHHHHHHHH
Q 032733 95 MQVFEPFSILGLEHGASDSDIKKAYRRLS 123 (135)
Q Consensus 95 ~~~~d~y~iLgv~~~as~~eIkkaYRkLs 123 (135)
....|-=+.|||++++=..-+++|-+++.
T Consensus 24 ~tl~elA~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 24 ITLEELAEELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 34456667899999998889999999875
No 65
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=22.38 E-value=1.1e+02 Score=18.49 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=19.5
Q ss_pred chhccCCCCCCHHHHHHHHHHHHH
Q 032733 101 FSILGLEHGASDSDIKKAYRRLSI 124 (135)
Q Consensus 101 y~iLgv~~~as~~eIkkaYRkLs~ 124 (135)
+.+=|+.|..+..|.|+..|+-.+
T Consensus 2 ~~~egl~pk~DPeE~k~kmR~dvi 25 (51)
T PF15178_consen 2 FRIEGLGPKMDPEEMKRKMREDVI 25 (51)
T ss_pred cccccCCCCCCHHHHHHHHHHHHH
Confidence 456689999999999999987543
No 66
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=21.84 E-value=78 Score=21.02 Aligned_cols=27 Identities=19% Similarity=0.025 Sum_probs=15.8
Q ss_pred cccCCCchHHHHHHHHhhhHHHHHHHHhh
Q 032733 4 TEENSQLFPIFILTIMALPLVPYTILKLC 32 (135)
Q Consensus 4 ~DE~g~~f~~F~lt~l~~~LiP~T~~~l~ 32 (135)
+-|++.+|.|.++-+ ++|+-+++.+.+
T Consensus 24 ~~eqkt~faFV~~L~--~fL~~liVRCfr 50 (81)
T PF11057_consen 24 DLEQKTAFAFVGLLC--LFLGLLIVRCFR 50 (81)
T ss_pred ccccceeehHHHHHH--HHHHHHHHHHHH
Confidence 347888888876543 444444455543
No 67
>COG3755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.62 E-value=76 Score=22.96 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=20.7
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhhC-CCC
Q 032733 104 LGLEHGASDSDIKKAYRRLSIQYH-PDK 130 (135)
Q Consensus 104 Lgv~~~as~~eIkkaYRkLs~k~H-PDK 130 (135)
.+-+-..-++++.+||+.+..+.| |++
T Consensus 42 ~~~e~~~aDa~LN~AY~~ll~~l~~~~~ 69 (127)
T COG3755 42 AGQEYQAADAELNKAYKALLKRLQDSPR 69 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChH
Confidence 334445668999999999999887 765
No 68
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=21.60 E-value=1.6e+02 Score=19.50 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=18.5
Q ss_pred chhccCCCCCCHHHHHHHHHHHHHh
Q 032733 101 FSILGLEHGASDSDIKKAYRRLSIQ 125 (135)
Q Consensus 101 y~iLgv~~~as~~eIkkaYRkLs~k 125 (135)
-.+-|..|.++++||..|=.+-.+|
T Consensus 6 ~~L~~fePpaT~~EI~aAAlQyVRK 30 (78)
T PF10041_consen 6 KTLRNFEPPATDEEIRAAALQYVRK 30 (78)
T ss_pred hhhcCCCCCCCHHHHHHHHHHHHHH
Confidence 3456788899999999986555444
No 69
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=21.47 E-value=1.1e+02 Score=25.91 Aligned_cols=52 Identities=17% Similarity=0.323 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHhcCcccccCCcchhccCCCCCCHHHHHHHHHHHHHhh
Q 032733 75 VLLWVIMIILIYYIKSTSREMQVFEPFSILGLEHGASDSDIKKAYRRLSIQY 126 (135)
Q Consensus 75 ~~~w~~~~~l~~~~~~~~~~~~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~ 126 (135)
.-+|+=+.+++.+..-.....+.-+.|+.||+++.-=+.++-+.=.+.|.+-
T Consensus 231 ~kLW~RFFLlsVfaTmyl~d~~R~~Fy~alGlD~~~yD~~Vi~~Tne~s~rv 282 (355)
T PRK13654 231 NRLWIRFFLLAVFATMYLRDHERPDFYEALGLDAREYDQEVIRKTNETSARV 282 (355)
T ss_pred HHHHHHHHHHHHHhheeeecccchHHHHHhCCCHHHhhHHHHHHhhHHHHhh
Confidence 3456666666666555555667789999999998654444433333444443
No 70
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=21.40 E-value=1.2e+02 Score=25.59 Aligned_cols=51 Identities=14% Similarity=0.288 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhcCcccccCCcchhccCCCCCCHHHHHHHHHHHHHhh
Q 032733 76 LLWVIMIILIYYIKSTSREMQVFEPFSILGLEHGASDSDIKKAYRRLSIQY 126 (135)
Q Consensus 76 ~~w~~~~~l~~~~~~~~~~~~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~ 126 (135)
-.|+=+.+++.+..-.....+.-+.|+.||+++..=+.++-+.=.+.|.+-
T Consensus 228 kLW~RFFLlsVfaTmyl~d~~R~~Fy~alGld~~~yD~~Vi~~Tn~~a~rv 278 (351)
T CHL00185 228 RLWCRFFLLSVFATMYLNDLQRSDFYAAIGLDARQFDMHVIRKTNESAARL 278 (351)
T ss_pred HHHHHHHHHHHHHHheehhcchHHHHHHhCCCHHHhhHHHHHHhhHHHHhh
Confidence 345555555555544455667789999999998654444433333334433
No 71
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=20.98 E-value=61 Score=20.67 Aligned_cols=26 Identities=12% Similarity=0.164 Sum_probs=20.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhhCCCC
Q 032733 104 LGLEHGASDSDIKKAYRRLSIQYHPDK 130 (135)
Q Consensus 104 Lgv~~~as~~eIkkaYRkLs~k~HPDK 130 (135)
+.+++++|.+++|+..-+.. ..+||+
T Consensus 16 l~v~~~~TV~~LK~~I~~~~-~~~~~~ 41 (78)
T cd01804 16 LSVPPDETVEGLKKRISQRL-KVPKER 41 (78)
T ss_pred EEECCcCHHHHHHHHHHHHh-CCChHH
Confidence 78899999999999876554 455553
No 72
>PHA02955 hypothetical protein; Provisional
Probab=20.87 E-value=92 Score=24.51 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=20.9
Q ss_pred CCchHHHHHHHHhhhHHHHHHHHhhhc
Q 032733 8 SQLFPIFILTIMALPLVPYTILKLCHA 34 (135)
Q Consensus 8 g~~f~~F~lt~l~~~LiP~T~~~l~~~ 34 (135)
|..+++|++..++++++-+.++.+++.
T Consensus 176 g~~~~w~ii~~v~ii~~~v~l~yikR~ 202 (213)
T PHA02955 176 SFSIKWFIIYIVLCLLILIILGYIYRT 202 (213)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 557788888888888887778887654
No 73
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=20.85 E-value=86 Score=17.81 Aligned_cols=17 Identities=35% Similarity=0.538 Sum_probs=11.9
Q ss_pred HHHHHhhhHHHHHHHHh
Q 032733 15 ILTIMALPLVPYTILKL 31 (135)
Q Consensus 15 ~lt~l~~~LiP~T~~~l 31 (135)
+++-+.+-|||.|+.=+
T Consensus 5 lL~GiVLGlipiTl~Gl 21 (37)
T PRK00665 5 LLCGIVLGLIPVTLAGL 21 (37)
T ss_pred hhhhHHHHhHHHHHHHH
Confidence 35566777889888655
No 74
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=20.73 E-value=1.3e+02 Score=25.28 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhcCcccccCCcchhccCCCCCCHHHHHHHHHHHHHh
Q 032733 76 LLWVIMIILIYYIKSTSREMQVFEPFSILGLEHGASDSDIKKAYRRLSIQ 125 (135)
Q Consensus 76 ~~w~~~~~l~~~~~~~~~~~~~~d~y~iLgv~~~as~~eIkkaYRkLs~k 125 (135)
-.|+=+.+++.+..-.....+..+.|+.||+++.-=+.++-+.=.+.|.+
T Consensus 222 kLW~RFFLLsVfaTmyl~d~~R~~Fy~alGld~~~yD~~Vi~~Tne~s~r 271 (337)
T TIGR02029 222 KLWSRFFLLSVYSTMYLRDHQRPGFYEALGLDATDFDLQVFRNTNETSGR 271 (337)
T ss_pred HHHHHHHHHHHHHHHhhhhcccHHHHHHhCCCHHHhhHHHHHHhhHHHHh
Confidence 34555555555544444555678999999999864443333333333333
No 75
>CHL00030 rpl23 ribosomal protein L23
Probab=20.11 E-value=89 Score=21.22 Aligned_cols=20 Identities=15% Similarity=0.391 Sum_probs=17.3
Q ss_pred hccCCCCCCHHHHHHHHHHH
Q 032733 103 ILGLEHGASDSDIKKAYRRL 122 (135)
Q Consensus 103 iLgv~~~as~~eIkkaYRkL 122 (135)
...|+++|+..|||+|-.++
T Consensus 23 ~F~V~~~anK~eIK~avE~l 42 (93)
T CHL00030 23 TFDVDSGSTKTEIKHWIELF 42 (93)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 46789999999999998766
Done!