Query 032733
Match_columns 135
No_of_seqs 171 out of 1274
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 08:06:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032733.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032733hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ys8_A RAB-related GTP-binding 99.5 1.5E-14 5E-19 97.3 4.7 38 97-134 26-63 (90)
2 2guz_A Mitochondrial import in 99.5 7.1E-15 2.4E-19 94.9 1.3 43 92-134 8-51 (71)
3 1hdj_A Human HSP40, HDJ-1; mol 99.5 4E-14 1.4E-18 92.1 4.5 37 98-134 3-39 (77)
4 2dn9_A DNAJ homolog subfamily 99.5 5E-14 1.7E-18 92.0 4.8 39 95-133 4-42 (79)
5 2och_A Hypothetical protein DN 99.4 5.7E-14 1.9E-18 90.6 4.5 39 96-134 6-44 (73)
6 2qwo_B Putative tyrosine-prote 99.4 2.4E-14 8.1E-19 97.2 2.8 37 98-134 33-69 (92)
7 2ctr_A DNAJ homolog subfamily 99.4 3.4E-14 1.2E-18 94.9 3.4 39 95-133 4-42 (88)
8 2cug_A Mkiaa0962 protein; DNAJ 99.4 6.6E-14 2.2E-18 93.5 4.7 39 96-134 15-53 (88)
9 2ej7_A HCG3 gene; HCG3 protein 99.4 6.5E-14 2.2E-18 92.1 4.4 40 95-134 6-45 (82)
10 2ctp_A DNAJ homolog subfamily 99.4 4.9E-14 1.7E-18 91.9 3.3 39 95-133 4-42 (78)
11 1faf_A Large T antigen; J doma 99.4 3E-14 1E-18 93.8 1.3 38 97-134 10-49 (79)
12 1iur_A KIAA0730 protein; DNAJ 99.4 4E-14 1.4E-18 95.2 1.5 40 95-134 13-52 (88)
13 2dmx_A DNAJ homolog subfamily 99.4 1.2E-13 4.2E-18 92.7 3.7 40 95-134 6-45 (92)
14 2yua_A Williams-beuren syndrom 99.4 1.6E-13 5.6E-18 93.5 4.3 40 94-133 13-52 (99)
15 2ctq_A DNAJ homolog subfamily 99.4 2.3E-13 7.7E-18 94.8 4.7 38 96-133 18-55 (112)
16 1bq0_A DNAJ, HSP40; chaperone, 99.4 2.3E-13 8E-18 93.3 4.6 36 98-133 3-38 (103)
17 1wjz_A 1700030A21RIK protein; 99.4 1.2E-13 4.2E-18 92.8 2.8 39 95-133 13-51 (94)
18 2lgw_A DNAJ homolog subfamily 99.4 2.7E-13 9.1E-18 92.8 4.3 37 98-134 2-38 (99)
19 2o37_A Protein SIS1; HSP40, J- 99.4 2.5E-13 8.6E-18 91.4 4.1 39 96-134 6-44 (92)
20 2ctw_A DNAJ homolog subfamily 99.4 3.7E-13 1.3E-17 93.3 4.5 38 96-133 15-52 (109)
21 1gh6_A Large T antigen; tumor 99.3 2.3E-13 8E-18 95.5 1.6 38 97-134 7-46 (114)
22 2l6l_A DNAJ homolog subfamily 99.3 1.2E-12 3.9E-17 95.6 4.5 41 94-134 6-46 (155)
23 2qsa_A DNAJ homolog DNJ-2; J-d 99.3 7E-13 2.4E-17 91.6 2.7 38 96-133 13-51 (109)
24 3ag7_A Putative uncharacterize 99.3 2.4E-13 8.3E-18 94.2 -0.3 36 97-133 40-75 (106)
25 2pf4_E Small T antigen; PP2A, 99.2 1.5E-12 5.2E-17 97.5 2.1 40 96-135 9-50 (174)
26 1n4c_A Auxilin; four helix bun 99.2 8.5E-12 2.9E-16 94.0 4.1 37 98-134 117-153 (182)
27 2guz_B Mitochondrial import in 99.2 3.3E-12 1.1E-16 81.4 1.3 38 97-134 3-43 (65)
28 3lz8_A Putative chaperone DNAJ 99.2 2.4E-12 8.1E-17 104.6 0.0 40 95-134 25-64 (329)
29 3bvo_A CO-chaperone protein HS 99.1 3.4E-11 1.2E-15 92.2 3.5 39 96-134 41-81 (207)
30 3uo3_A J-type CO-chaperone JAC 99.0 4.5E-10 1.5E-14 84.3 5.0 38 96-133 9-53 (181)
31 3apo_A DNAJ homolog subfamily 98.9 1.5E-10 5.1E-15 101.3 1.0 38 96-133 19-56 (780)
32 2y4t_A DNAJ homolog subfamily 97.5 2.3E-05 7.8E-10 61.7 1.6 37 98-134 382-418 (450)
33 2pzi_A Probable serine/threoni 88.7 0.11 3.8E-06 44.5 0.8 33 97-129 628-662 (681)
34 2lif_A Core protein P21; signa 80.1 0.41 1.4E-05 24.8 0.0 20 8-27 3-22 (27)
35 2knc_A Integrin alpha-IIB; tra 35.3 66 0.0023 18.9 4.1 33 1-33 3-35 (54)
36 2bye_A Phospholipase C, epsilo 33.5 12 0.0004 25.5 0.6 23 96-118 18-40 (110)
37 2dw3_A Intrinsic membrane prot 32.4 76 0.0026 20.1 4.3 36 72-108 35-72 (77)
38 1qqr_A Streptokinase domain B; 31.7 23 0.00079 25.0 1.9 29 101-129 35-63 (138)
39 1xs0_A Inhibitor of vertebrate 31.2 38 0.0013 23.8 3.0 35 97-131 90-126 (136)
40 2lxi_A RNA-binding protein 10; 27.6 43 0.0015 20.5 2.6 20 104-123 7-26 (91)
41 2k21_A Potassium voltage-gated 25.1 1.3E+02 0.0043 21.1 4.7 37 4-40 46-84 (138)
42 2gf4_A Protein VNG1086C; HSR14 23.8 1.6E+02 0.0055 19.4 5.6 27 97-123 30-59 (100)
43 1iqt_A AUF1, heterogeneous nuc 21.5 70 0.0024 18.2 2.6 19 104-122 5-23 (75)
44 2cqq_A RSGI RUH-037, DNAJ homo 21.0 97 0.0033 18.9 3.2 21 110-130 43-63 (72)
No 1
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.5e-14 Score=97.32 Aligned_cols=38 Identities=39% Similarity=0.776 Sum_probs=35.9
Q ss_pred cCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCCC
Q 032733 97 VFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP 134 (135)
Q Consensus 97 ~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~~ 134 (135)
..|||+||||+++++.+|||+|||+|+++|||||++++
T Consensus 26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~ 63 (90)
T 2ys8_A 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAP 63 (90)
T ss_dssp CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCT
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc
Confidence 47999999999999999999999999999999999764
No 2
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.47 E-value=7.1e-15 Score=94.89 Aligned_cols=43 Identities=28% Similarity=0.498 Sum_probs=37.8
Q ss_pred CcccccCCcchhccCCC-CCCHHHHHHHHHHHHHhhCCCCCCCC
Q 032733 92 SREMQVFEPFSILGLEH-GASDSDIKKAYRRLSIQYHPDKNPDP 134 (135)
Q Consensus 92 ~~~~~~~d~y~iLgv~~-~as~~eIkkaYRkLs~k~HPDK~~~~ 134 (135)
...+...++|+||||++ +++.+|||+|||+|++++|||+++++
T Consensus 8 ~~~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~ 51 (71)
T 2guz_A 8 DPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSP 51 (71)
T ss_dssp CSSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCH
T ss_pred CCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCH
Confidence 33455679999999999 79999999999999999999998764
No 3
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.46 E-value=4e-14 Score=92.14 Aligned_cols=37 Identities=54% Similarity=1.000 Sum_probs=35.2
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCCC
Q 032733 98 FEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP 134 (135)
Q Consensus 98 ~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~~ 134 (135)
.|||+||||+++++.+|||+|||+|++++|||+++++
T Consensus 3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~ 39 (77)
T 1hdj_A 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP 39 (77)
T ss_dssp CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc
Confidence 5899999999999999999999999999999999764
No 4
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=5e-14 Score=92.02 Aligned_cols=39 Identities=44% Similarity=0.680 Sum_probs=36.5
Q ss_pred cccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q 032733 95 MQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD 133 (135)
Q Consensus 95 ~~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~ 133 (135)
+...|+|+||||+++++.+|||+|||+|++++|||++++
T Consensus 4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~ 42 (79)
T 2dn9_A 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKD 42 (79)
T ss_dssp SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSS
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC
Confidence 456799999999999999999999999999999999975
No 5
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.45 E-value=5.7e-14 Score=90.64 Aligned_cols=39 Identities=44% Similarity=0.887 Sum_probs=36.2
Q ss_pred ccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCCC
Q 032733 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP 134 (135)
Q Consensus 96 ~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~~ 134 (135)
...|+|+||||+++++.+|||+|||+|++++|||+++++
T Consensus 6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~ 44 (73)
T 2och_A 6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG 44 (73)
T ss_dssp CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH
Confidence 457999999999999999999999999999999999763
No 6
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.45 E-value=2.4e-14 Score=97.20 Aligned_cols=37 Identities=22% Similarity=0.378 Sum_probs=34.9
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCCC
Q 032733 98 FEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP 134 (135)
Q Consensus 98 ~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~~ 134 (135)
.++|++|||+++|+++|||+|||+++++|||||++++
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~ 69 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQ 69 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTS
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc
Confidence 5899999999999999999999999999999999764
No 7
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=3.4e-14 Score=94.92 Aligned_cols=39 Identities=41% Similarity=0.696 Sum_probs=36.4
Q ss_pred cccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q 032733 95 MQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD 133 (135)
Q Consensus 95 ~~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~ 133 (135)
....|+|+||||+++++.+|||+|||+|++++||||+++
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~ 42 (88)
T 2ctr_A 4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS 42 (88)
T ss_dssp CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC
Confidence 356799999999999999999999999999999999975
No 8
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.44 E-value=6.6e-14 Score=93.52 Aligned_cols=39 Identities=51% Similarity=0.988 Sum_probs=36.5
Q ss_pred ccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCCC
Q 032733 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP 134 (135)
Q Consensus 96 ~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~~ 134 (135)
...|||+||||+++++.+|||+|||+|++++||||++++
T Consensus 15 ~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~ 53 (88)
T 2cug_A 15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDP 53 (88)
T ss_dssp SSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCST
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCh
Confidence 457999999999999999999999999999999999864
No 9
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=6.5e-14 Score=92.08 Aligned_cols=40 Identities=40% Similarity=0.779 Sum_probs=36.8
Q ss_pred cccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCCC
Q 032733 95 MQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP 134 (135)
Q Consensus 95 ~~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~~ 134 (135)
....|+|+||||+++++.+|||+|||+|++++|||+++++
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~ 45 (82)
T 2ej7_A 6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPEN 45 (82)
T ss_dssp SSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTT
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc
Confidence 3457999999999999999999999999999999999763
No 10
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=4.9e-14 Score=91.94 Aligned_cols=39 Identities=51% Similarity=0.859 Sum_probs=36.4
Q ss_pred cccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q 032733 95 MQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD 133 (135)
Q Consensus 95 ~~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~ 133 (135)
+...|||+||||+++++.+|||+|||+|++++|||++++
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~ 42 (78)
T 2ctp_A 4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA 42 (78)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC
Confidence 456799999999999999999999999999999999875
No 11
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.41 E-value=3e-14 Score=93.80 Aligned_cols=38 Identities=24% Similarity=0.365 Sum_probs=35.5
Q ss_pred cCCcchhccCCCC--CCHHHHHHHHHHHHHhhCCCCCCCC
Q 032733 97 VFEPFSILGLEHG--ASDSDIKKAYRRLSIQYHPDKNPDP 134 (135)
Q Consensus 97 ~~d~y~iLgv~~~--as~~eIkkaYRkLs~k~HPDK~~~~ 134 (135)
..++|+||||+++ ++.+|||+|||+|++++||||++++
T Consensus 10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~ 49 (79)
T 1faf_A 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSH 49 (79)
T ss_dssp HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCH
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCH
Confidence 4689999999999 9999999999999999999998863
No 12
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.41 E-value=4e-14 Score=95.22 Aligned_cols=40 Identities=35% Similarity=0.513 Sum_probs=36.7
Q ss_pred cccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCCC
Q 032733 95 MQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP 134 (135)
Q Consensus 95 ~~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~~ 134 (135)
....|+|+||||+++|+.+|||+|||+|+++|||||++++
T Consensus 13 ~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~ 52 (88)
T 1iur_A 13 SILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPEN 52 (88)
T ss_dssp SCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSC
T ss_pred ccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc
Confidence 3457999999999999999999999999999999999864
No 13
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.2e-13 Score=92.71 Aligned_cols=40 Identities=48% Similarity=0.865 Sum_probs=36.8
Q ss_pred cccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCCC
Q 032733 95 MQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP 134 (135)
Q Consensus 95 ~~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~~ 134 (135)
....|+|+||||+++++.+|||+|||+|++++||||++++
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~ 45 (92)
T 2dmx_A 6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDN 45 (92)
T ss_dssp CCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSC
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCcc
Confidence 3457999999999999999999999999999999999763
No 14
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.6e-13 Score=93.49 Aligned_cols=40 Identities=33% Similarity=0.587 Sum_probs=36.9
Q ss_pred ccccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q 032733 94 EMQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD 133 (135)
Q Consensus 94 ~~~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~ 133 (135)
.+...|+|+||||+++++.+|||+|||+|+++|||||+++
T Consensus 13 ~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~ 52 (99)
T 2yua_A 13 SYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSG 52 (99)
T ss_dssp SSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSS
T ss_pred CCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC
Confidence 3456899999999999999999999999999999999975
No 15
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.3e-13 Score=94.77 Aligned_cols=38 Identities=24% Similarity=0.514 Sum_probs=35.9
Q ss_pred ccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q 032733 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD 133 (135)
Q Consensus 96 ~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~ 133 (135)
...|+|+||||+++++.+|||+|||+|++++||||+++
T Consensus 18 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~ 55 (112)
T 2ctq_A 18 DTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPE 55 (112)
T ss_dssp CCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTT
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC
Confidence 45799999999999999999999999999999999985
No 16
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.39 E-value=2.3e-13 Score=93.26 Aligned_cols=36 Identities=42% Similarity=0.882 Sum_probs=34.7
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q 032733 98 FEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD 133 (135)
Q Consensus 98 ~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~ 133 (135)
.|||+||||+++++.+|||+|||+|++++||||+++
T Consensus 3 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~ 38 (103)
T 1bq0_A 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQG 38 (103)
T ss_dssp CCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTT
T ss_pred CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC
Confidence 699999999999999999999999999999999975
No 17
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.38 E-value=1.2e-13 Score=92.80 Aligned_cols=39 Identities=38% Similarity=0.624 Sum_probs=36.2
Q ss_pred cccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q 032733 95 MQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD 133 (135)
Q Consensus 95 ~~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~ 133 (135)
....|+|+||||+++++.+|||+|||+|++++||||++.
T Consensus 13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~ 51 (94)
T 1wjz_A 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSA 51 (94)
T ss_dssp SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCT
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC
Confidence 456799999999999999999999999999999999863
No 18
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.38 E-value=2.7e-13 Score=92.76 Aligned_cols=37 Identities=54% Similarity=0.858 Sum_probs=35.1
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCCC
Q 032733 98 FEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP 134 (135)
Q Consensus 98 ~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~~ 134 (135)
.|+|+||||+++++.+|||+|||+|++++||||++++
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~ 38 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDN 38 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCcc
Confidence 5899999999999999999999999999999999864
No 19
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.38 E-value=2.5e-13 Score=91.42 Aligned_cols=39 Identities=31% Similarity=0.705 Sum_probs=36.0
Q ss_pred ccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCCC
Q 032733 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP 134 (135)
Q Consensus 96 ~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~~ 134 (135)
...|+|+||||+++++.+|||+|||+|++++||||++++
T Consensus 6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~ 44 (92)
T 2o37_A 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD 44 (92)
T ss_dssp SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC
T ss_pred cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh
Confidence 457999999999999999999999999999999999653
No 20
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.37 E-value=3.7e-13 Score=93.32 Aligned_cols=38 Identities=50% Similarity=0.949 Sum_probs=35.9
Q ss_pred ccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q 032733 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD 133 (135)
Q Consensus 96 ~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~ 133 (135)
...|||+||||+++++.+|||+|||+|++++||||+++
T Consensus 15 ~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~ 52 (109)
T 2ctw_A 15 SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPD 52 (109)
T ss_dssp CSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTT
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC
Confidence 45799999999999999999999999999999999975
No 21
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.33 E-value=2.3e-13 Score=95.47 Aligned_cols=38 Identities=34% Similarity=0.583 Sum_probs=35.6
Q ss_pred cCCcchhccCCCCCCH--HHHHHHHHHHHHhhCCCCCCCC
Q 032733 97 VFEPFSILGLEHGASD--SDIKKAYRRLSIQYHPDKNPDP 134 (135)
Q Consensus 97 ~~d~y~iLgv~~~as~--~eIkkaYRkLs~k~HPDK~~~~ 134 (135)
..|+|+||||+++++. +|||+|||+|++++||||+++.
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~ 46 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE 46 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTT
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccH
Confidence 4689999999999999 9999999999999999999874
No 22
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.31 E-value=1.2e-12 Score=95.60 Aligned_cols=41 Identities=39% Similarity=0.654 Sum_probs=37.4
Q ss_pred ccccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCCC
Q 032733 94 EMQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP 134 (135)
Q Consensus 94 ~~~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~~ 134 (135)
+....|||+||||+++++.+|||+|||+|++++||||++++
T Consensus 6 ~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~ 46 (155)
T 2l6l_A 6 QMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTD 46 (155)
T ss_dssp CCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCC
T ss_pred cCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC
Confidence 34567999999999999999999999999999999998764
No 23
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.30 E-value=7e-13 Score=91.63 Aligned_cols=38 Identities=24% Similarity=0.467 Sum_probs=35.7
Q ss_pred ccCCcchhccCCCCC-CHHHHHHHHHHHHHhhCCCCCCC
Q 032733 96 QVFEPFSILGLEHGA-SDSDIKKAYRRLSIQYHPDKNPD 133 (135)
Q Consensus 96 ~~~d~y~iLgv~~~a-s~~eIkkaYRkLs~k~HPDK~~~ 133 (135)
...|||+||||++++ +.+|||+|||+|++++||||+++
T Consensus 13 ~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~ 51 (109)
T 2qsa_A 13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKN 51 (109)
T ss_dssp TTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCS
T ss_pred CCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC
Confidence 357999999999999 99999999999999999999875
No 24
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.29 E-value=2.4e-13 Score=94.23 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=33.3
Q ss_pred cCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q 032733 97 VFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD 133 (135)
Q Consensus 97 ~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~ 133 (135)
..|+|+|||++. |+.+|||+|||+|+++|||||+++
T Consensus 40 ~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~ 75 (106)
T 3ag7_A 40 GSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQ 75 (106)
T ss_dssp TSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCC
Confidence 479999999996 999999999999999999999863
No 25
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.25 E-value=1.5e-12 Score=97.49 Aligned_cols=40 Identities=33% Similarity=0.529 Sum_probs=33.4
Q ss_pred ccCCcchhccCCCCCC--HHHHHHHHHHHHHhhCCCCCCCCC
Q 032733 96 QVFEPFSILGLEHGAS--DSDIKKAYRRLSIQYHPDKNPDPG 135 (135)
Q Consensus 96 ~~~d~y~iLgv~~~as--~~eIkkaYRkLs~k~HPDK~~~~~ 135 (135)
...|+|+||||+++|+ .+|||+|||+|++++||||+++++
T Consensus 9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~e 50 (174)
T 2pf4_E 9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEE 50 (174)
T ss_dssp HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CCT
T ss_pred ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCHH
Confidence 3469999999999998 699999999999999999998753
No 26
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.20 E-value=8.5e-12 Score=94.01 Aligned_cols=37 Identities=24% Similarity=0.449 Sum_probs=35.0
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCCC
Q 032733 98 FEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP 134 (135)
Q Consensus 98 ~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~~ 134 (135)
.|+|+||||+++|+.+|||+|||+|++++||||++++
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~ 153 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQ 153 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCc
Confidence 6999999999999999999999999999999998753
No 27
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.19 E-value=3.3e-12 Score=81.43 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=35.0
Q ss_pred cCCcchhccCCCC---CCHHHHHHHHHHHHHhhCCCCCCCC
Q 032733 97 VFEPFSILGLEHG---ASDSDIKKAYRRLSIQYHPDKNPDP 134 (135)
Q Consensus 97 ~~d~y~iLgv~~~---as~~eIkkaYRkLs~k~HPDK~~~~ 134 (135)
..+.|+||||+++ ++.++|+++||+|+..+||||+|++
T Consensus 3 ~~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~ 43 (65)
T 2guz_B 3 LDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSF 43 (65)
T ss_dssp HHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCH
T ss_pred HHHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCH
Confidence 3578999999999 9999999999999999999999873
No 28
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.17 E-value=2.4e-12 Score=104.63 Aligned_cols=40 Identities=38% Similarity=0.668 Sum_probs=0.0
Q ss_pred cccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCCC
Q 032733 95 MQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP 134 (135)
Q Consensus 95 ~~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~~ 134 (135)
+...|||+||||+++|+.+|||+|||+|+++|||||++++
T Consensus 25 m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~ 64 (329)
T 3lz8_A 25 MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN 64 (329)
T ss_dssp ----------------------------------------
T ss_pred ccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCCh
Confidence 4557999999999999999999999999999999998764
No 29
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.10 E-value=3.4e-11 Score=92.17 Aligned_cols=39 Identities=18% Similarity=0.345 Sum_probs=35.2
Q ss_pred ccCCcchhccCCCC--CCHHHHHHHHHHHHHhhCCCCCCCC
Q 032733 96 QVFEPFSILGLEHG--ASDSDIKKAYRRLSIQYHPDKNPDP 134 (135)
Q Consensus 96 ~~~d~y~iLgv~~~--as~~eIkkaYRkLs~k~HPDK~~~~ 134 (135)
...|+|+||||+++ ++.++||+|||+|+++|||||++++
T Consensus 41 ~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~ 81 (207)
T 3bvo_A 41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQR 81 (207)
T ss_dssp TTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTS
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC
Confidence 35799999999986 7899999999999999999998753
No 30
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=98.97 E-value=4.5e-10 Score=84.30 Aligned_cols=38 Identities=26% Similarity=0.407 Sum_probs=33.8
Q ss_pred ccCCcchhc------cCCC-CCCHHHHHHHHHHHHHhhCCCCCCC
Q 032733 96 QVFEPFSIL------GLEH-GASDSDIKKAYRRLSIQYHPDKNPD 133 (135)
Q Consensus 96 ~~~d~y~iL------gv~~-~as~~eIkkaYRkLs~k~HPDK~~~ 133 (135)
...|||+|| |+++ +++.++||+|||+|++++||||+++
T Consensus 9 ~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~ 53 (181)
T 3uo3_A 9 FTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ 53 (181)
T ss_dssp CSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS
T ss_pred CCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc
Confidence 457999999 4655 8999999999999999999999874
No 31
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=98.93 E-value=1.5e-10 Score=101.28 Aligned_cols=38 Identities=37% Similarity=0.774 Sum_probs=22.0
Q ss_pred ccCCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q 032733 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD 133 (135)
Q Consensus 96 ~~~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~ 133 (135)
...|||+||||+++|+.+|||+|||+|+++|||||+++
T Consensus 19 ~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~ 56 (780)
T 3apo_A 19 HDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPN 56 (780)
T ss_dssp ----CHHHHTCCTTCCHHHHHHHHCC------------
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC
Confidence 45799999999999999999999999999999999864
No 32
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.54 E-value=2.3e-05 Score=61.68 Aligned_cols=37 Identities=38% Similarity=0.730 Sum_probs=34.5
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHhhCCCCCCCC
Q 032733 98 FEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP 134 (135)
Q Consensus 98 ~d~y~iLgv~~~as~~eIkkaYRkLs~k~HPDK~~~~ 134 (135)
.+.|++||+...++.++|+++||++++++|||+.+++
T Consensus 382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~ 418 (450)
T 2y4t_A 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNE 418 (450)
T ss_dssp CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSH
T ss_pred hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence 4899999999999999999999999999999998753
No 33
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=88.67 E-value=0.11 Score=44.48 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=26.5
Q ss_pred cCCcchhccCCCCCCH--HHHHHHHHHHHHhhCCC
Q 032733 97 VFEPFSILGLEHGASD--SDIKKAYRRLSIQYHPD 129 (135)
Q Consensus 97 ~~d~y~iLgv~~~as~--~eIkkaYRkLs~k~HPD 129 (135)
..|+|.+||++.+... .+|++|||+|++..++|
T Consensus 628 ~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~ 662 (681)
T 2pzi_A 628 KASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ 662 (681)
T ss_dssp CCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH
T ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh
Confidence 3469999999766655 77999999999976654
No 34
>2lif_A Core protein P21; signal peptide, E1 envelope protein, transmemb membrane protein, viral protein; NMR {Hepatitis c virus jfh-1}
Probab=80.07 E-value=0.41 Score=24.82 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=17.4
Q ss_pred CCchHHHHHHHHhhhHHHHH
Q 032733 8 SQLFPIFILTIMALPLVPYT 27 (135)
Q Consensus 8 g~~f~~F~lt~l~~~LiP~T 27 (135)
|--|.+|+++++++.++|..
T Consensus 3 gcsfsiFlLaLlscLt~Pas 22 (27)
T 2lif_A 3 GFPFSIFLLALLSCITVPVS 22 (27)
Confidence 55789999999999999974
No 35
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=35.27 E-value=66 Score=18.93 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=18.2
Q ss_pred CCccccCCCchHHHHHHHHhhhHHHHHHHHhhh
Q 032733 1 MAATEENSQLFPIFILTIMALPLVPYTILKLCH 33 (135)
Q Consensus 1 ~~~~DE~g~~f~~F~lt~l~~~LiP~T~~~l~~ 33 (135)
|+.-+++=..|.+.+..+.++.++.+.++.+++
T Consensus 3 ~~~~~~~vp~wiIi~svl~GLllL~li~~~LwK 35 (54)
T 2knc_A 3 MGSEERAIPIWWVLVGVLGGLLLLTILVLAMWK 35 (54)
T ss_dssp TTCTTTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555455666666666666555555555544
No 36
>2bye_A Phospholipase C, epsilon 1; RAS association domain, ubiquitin superfold; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=33.51 E-value=12 Score=25.52 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=19.7
Q ss_pred ccCCcchhccCCCCCCHHHHHHH
Q 032733 96 QVFEPFSILGLEHGASDSDIKKA 118 (135)
Q Consensus 96 ~~~d~y~iLgv~~~as~~eIkka 118 (135)
...+||.||-++..++.++|-+.
T Consensus 18 ~~~ePftI~~~~~~STAkdvl~q 40 (110)
T 2bye_A 18 PGPEPFTVFTINGGTKAKQLLQQ 40 (110)
T ss_dssp SSSSSSEEEECCTTCCHHHHHHH
T ss_pred CCCCCcEEEEecCCCcHHHHHHH
Confidence 45799999999999999888654
No 37
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=32.36 E-value=76 Score=20.08 Aligned_cols=36 Identities=17% Similarity=0.059 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHhc--CcccccCCcchhccCCC
Q 032733 72 LSLVLLWVIMIILIYYIKST--SREMQVFEPFSILGLEH 108 (135)
Q Consensus 72 ~~l~~~w~~~~~l~~~~~~~--~~~~~~~d~y~iLgv~~ 108 (135)
++++.+|.++..+ +.+... +.+.+.-|||..+.|..
T Consensus 35 v~f~~~~~~lv~l-~~iG~~LPE~Sr~aP~P~~~~~i~~ 72 (77)
T 2dw3_A 35 GVFFGTLLLIGFF-RVVGRMLPIQENQAPAPNITGALEH 72 (77)
T ss_dssp HHHHHHHHHHHHH-HHHHHCTTTTCSSCSSCCSSCSCSS
T ss_pred HHHHHHHHHHHHH-HHHHHhCchhcccCCCCcchhHHhh
Confidence 4555666655544 344444 33446679999988864
No 38
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=31.70 E-value=23 Score=24.96 Aligned_cols=29 Identities=10% Similarity=0.258 Sum_probs=26.5
Q ss_pred chhccCCCCCCHHHHHHHHHHHHHhhCCC
Q 032733 101 FSILGLEHGASDSDIKKAYRRLSIQYHPD 129 (135)
Q Consensus 101 y~iLgv~~~as~~eIkkaYRkLs~k~HPD 129 (135)
+..|.|....+.+|++++=-.+-.++|||
T Consensus 35 l~~k~ig~~Its~eL~~~AqeiL~q~hp~ 63 (138)
T 1qqr_A 35 LKTLAIGDTITSQELLAQAQSILNKNHPG 63 (138)
T ss_dssp EEEECTTCEEEHHHHHHHHHHHHHHHSTT
T ss_pred hcccccCcccCHHHHHHHHHHHHHhcCCC
Confidence 67788889999999999999999999998
No 39
>1xs0_A Inhibitor of vertebrate lysozyme; alpha beta fold, dimer, hydrolase inhibitor; 1.58A {Escherichia coli} SCOP: d.233.1.1 PDB: 1gpq_A
Probab=31.20 E-value=38 Score=23.78 Aligned_cols=35 Identities=20% Similarity=0.184 Sum_probs=27.8
Q ss_pred cCCcchhccCCCCC--CHHHHHHHHHHHHHhhCCCCC
Q 032733 97 VFEPFSILGLEHGA--SDSDIKKAYRRLSIQYHPDKN 131 (135)
Q Consensus 97 ~~d~y~iLgv~~~a--s~~eIkkaYRkLs~k~HPDK~ 131 (135)
..--|..||.+... +-+.|-.|+-.=++..|||..
T Consensus 90 ~~a~~~WLG~Pd~~sidg~t~l~a~lt~sl~nhP~~f 126 (136)
T 1xs0_A 90 SQEKLTWLNVNDALSIDGKTVLFAALTGSLENHPDGF 126 (136)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHHTHHHHSTTSC
T ss_pred ceeeeEecCCCChhhcccHHHHHHHHhcchhcCcccc
Confidence 34558899996544 458899999999999999974
No 40
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=27.59 E-value=43 Score=20.54 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=17.4
Q ss_pred ccCCCCCCHHHHHHHHHHHH
Q 032733 104 LGLEHGASDSDIKKAYRRLS 123 (135)
Q Consensus 104 Lgv~~~as~~eIkkaYRkLs 123 (135)
=||++++++++|+..+.+..
T Consensus 7 ~nLp~~~te~~l~~~F~~~G 26 (91)
T 2lxi_A 7 RMLPQAATEDDIRGQLQSHG 26 (91)
T ss_dssp ETCCSSCCHHHHHHHHHHHT
T ss_pred eCCCCCCCHHHHHHHHHHhC
Confidence 38899999999999998764
No 41
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=25.08 E-value=1.3e+02 Score=21.06 Aligned_cols=37 Identities=5% Similarity=0.131 Sum_probs=25.1
Q ss_pred cccCC--CchHHHHHHHHhhhHHHHHHHHhhhccccccc
Q 032733 4 TEENS--QLFPIFILTIMALPLVPYTILKLCHAFSKKIK 40 (135)
Q Consensus 4 ~DE~g--~~f~~F~lt~l~~~LiP~T~~~l~~~~~~~~~ 40 (135)
.|.+| -.+.-++++|.+++++-+.+..++.....+..
T Consensus 46 ~~~~~~~ylYIL~vmgffgff~~GImLsYiRSKk~E~s~ 84 (138)
T 2k21_A 46 SGDGKLEALYVLMVLGFFGFFTLGIMLSYIRSKKLEHSN 84 (138)
T ss_dssp CTTCSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCceeehHHHHHHHHHHHHHHHHHHHhHhhhccccC
Confidence 34445 34556788999999999998888755433333
No 42
>2gf4_A Protein VNG1086C; HSR14, structural genomics, PSI, protein structure initiativ northeast structural genomics consortium, NESG, unknown FUN; 2.07A {Halobacterium SP} SCOP: a.8.10.1
Probab=23.85 E-value=1.6e+02 Score=19.42 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=19.6
Q ss_pred cCCcchhccCCCCC---CHHHHHHHHHHHH
Q 032733 97 VFEPFSILGLEHGA---SDSDIKKAYRRLS 123 (135)
Q Consensus 97 ~~d~y~iLgv~~~a---s~~eIkkaYRkLs 123 (135)
.++.|+-|||+|.. +..|=|.|-..|+
T Consensus 30 ~f~~Y~~L~I~P~hIHKsK~eHK~AIF~L~ 59 (100)
T 2gf4_A 30 AFAAYEELDVEPSHVHKSKSEHKHAVFLLG 59 (100)
T ss_dssp TTHHHHHHTCCTTCTTSCHHHHHHHHHHHH
T ss_pred hhHHHHHcCCChhhhcCCHHHHHHHHHHHH
Confidence 68999999999974 5666666655443
No 43
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=21.52 E-value=70 Score=18.21 Aligned_cols=19 Identities=16% Similarity=0.363 Sum_probs=16.4
Q ss_pred ccCCCCCCHHHHHHHHHHH
Q 032733 104 LGLEHGASDSDIKKAYRRL 122 (135)
Q Consensus 104 Lgv~~~as~~eIkkaYRkL 122 (135)
=||++++++++|+..+.+.
T Consensus 5 ~nLp~~~t~~~l~~~F~~~ 23 (75)
T 1iqt_A 5 GGLSPDTPEEKIREYFGGF 23 (75)
T ss_dssp SCCCSSCCHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHhc
Confidence 3788999999999998875
No 44
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=21.04 E-value=97 Score=18.92 Aligned_cols=21 Identities=14% Similarity=0.093 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCC
Q 032733 110 ASDSDIKKAYRRLSIQYHPDK 130 (135)
Q Consensus 110 as~~eIkkaYRkLs~k~HPDK 130 (135)
-|.+||+++|+.|......+.
T Consensus 43 Rt~~eV~~~y~~L~~d~~~~~ 63 (72)
T 2cqq_A 43 RSVTDVTTKAKQLKDSVTCSP 63 (72)
T ss_dssp SCHHHHHHHHHHHHHSCCCCS
T ss_pred CCHHHHHHHHHHHHHhcCccC
Confidence 588999999999987665554
Done!