Query 032735
Match_columns 135
No_of_seqs 106 out of 1147
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 05:17:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032735.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032735hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0356 Mitochondrial chaperon 100.0 1.3E-42 2.8E-47 302.1 5.7 130 2-134 113-242 (550)
2 PLN03167 Chaperonin-60 beta su 100.0 9.6E-32 2.1E-36 239.0 12.4 129 2-134 155-283 (600)
3 PRK14104 chaperonin GroEL; Pro 100.0 1.1E-29 2.3E-34 223.6 11.7 130 2-134 100-229 (546)
4 CHL00093 groEL chaperonin GroE 100.0 1.7E-29 3.6E-34 221.4 11.5 130 2-134 99-228 (529)
5 PRK12852 groEL chaperonin GroE 100.0 2.6E-29 5.7E-34 220.8 12.7 130 2-134 100-229 (545)
6 PTZ00114 Heat shock protein 60 100.0 1E-28 2.2E-33 217.6 12.7 130 2-134 111-240 (555)
7 COG0459 GroL Chaperonin GroEL 99.9 5.4E-28 1.2E-32 212.4 9.4 126 2-134 96-230 (524)
8 TIGR02348 GroEL chaperonin Gro 99.9 2.5E-26 5.5E-31 201.2 12.3 130 2-134 98-227 (524)
9 PRK00013 groEL chaperonin GroE 99.9 3.3E-26 7.2E-31 201.4 13.1 130 2-134 99-228 (542)
10 PRK12850 groEL chaperonin GroE 99.9 3.5E-26 7.5E-31 201.3 12.3 130 2-134 100-229 (544)
11 PRK12851 groEL chaperonin GroE 99.9 5E-26 1.1E-30 200.2 12.4 130 2-134 100-229 (541)
12 PRK12849 groEL chaperonin GroE 99.9 2.3E-25 4.9E-30 196.1 12.8 130 2-134 99-228 (542)
13 cd03344 GroEL GroEL_like type 99.9 9E-25 2E-29 191.4 12.8 130 2-134 97-226 (520)
14 TIGR02345 chap_CCT_eta T-compl 99.8 5.6E-20 1.2E-24 160.8 9.3 124 2-134 102-243 (522)
15 cd03342 TCP1_zeta TCP-1 (CTT o 99.8 1.3E-19 2.8E-24 157.4 10.3 121 2-134 97-235 (484)
16 cd03343 cpn60 cpn60 chaperonin 99.8 1.4E-18 3E-23 151.3 9.1 121 2-133 100-239 (517)
17 cd03338 TCP1_delta TCP-1 (CTT 99.7 3.9E-18 8.4E-23 148.6 9.2 124 2-130 93-247 (515)
18 TIGR02347 chap_CCT_zeta T-comp 99.7 7.6E-18 1.7E-22 148.0 10.0 123 2-134 101-239 (531)
19 TIGR02340 chap_CCT_alpha T-com 99.7 1.5E-17 3.2E-22 146.0 9.9 122 2-134 97-239 (536)
20 cd00309 chaperonin_type_I_II c 99.7 4E-17 8.6E-22 140.3 11.4 123 2-133 93-229 (464)
21 cd03340 TCP1_eta TCP-1 (CTT or 99.7 2.2E-17 4.7E-22 144.3 9.9 124 2-134 101-242 (522)
22 PTZ00212 T-complex protein 1 s 99.7 9.4E-18 2E-22 147.2 6.6 125 2-133 112-247 (533)
23 TIGR02339 thermosome_arch ther 99.7 5.3E-17 1.1E-21 141.8 9.7 122 2-133 101-242 (519)
24 TIGR02341 chap_CCT_beta T-comp 99.7 7.8E-17 1.7E-21 141.2 7.2 127 2-134 101-237 (519)
25 TIGR02346 chap_CCT_theta T-com 99.7 4.1E-17 9E-22 143.2 5.3 126 2-131 103-262 (531)
26 cd03339 TCP1_epsilon TCP-1 (CT 99.6 2.5E-16 5.3E-21 137.9 4.7 124 2-131 108-256 (526)
27 cd03335 TCP1_alpha TCP-1 (CTT 99.6 2.3E-15 5.1E-20 131.8 9.0 122 2-134 93-235 (527)
28 cd03336 TCP1_beta TCP-1 (CTT o 99.6 5.1E-15 1.1E-19 129.5 9.3 121 2-133 100-235 (517)
29 TIGR02343 chap_CCT_epsi T-comp 99.6 3.8E-15 8.3E-20 130.9 7.1 123 2-131 112-260 (532)
30 TIGR02342 chap_CCT_delta T-com 99.5 3E-14 6.5E-19 124.7 7.8 123 2-128 94-247 (517)
31 cd03337 TCP1_gamma TCP-1 (CTT 99.5 6.9E-14 1.5E-18 121.4 8.3 121 2-133 101-242 (480)
32 TIGR02344 chap_CCT_gamma T-com 99.5 9.9E-14 2.2E-18 121.4 8.6 122 2-134 101-243 (525)
33 cd03341 TCP1_theta TCP-1 (CTT 99.4 2.8E-13 6E-18 117.5 8.2 119 2-133 93-229 (472)
34 PF00118 Cpn60_TCP1: TCP-1/cpn 99.4 1.2E-12 2.6E-17 111.6 10.9 120 3-134 75-207 (485)
35 cd03333 chaperonin_like chaper 98.8 7.2E-09 1.6E-13 80.4 5.8 81 46-133 2-93 (209)
36 KOG0359 Chaperonin complex com 96.9 0.0023 5E-08 56.3 6.1 111 9-132 107-234 (520)
37 KOG0361 Chaperonin complex com 95.4 0.072 1.6E-06 46.8 7.6 120 9-133 110-245 (543)
38 KOG0364 Chaperonin complex com 93.8 0.15 3.2E-06 45.4 5.7 118 9-133 109-242 (527)
39 KOG0362 Chaperonin complex com 92.1 1.5 3.2E-05 39.5 9.5 94 8-103 115-221 (537)
40 KOG3083 Prohibitin [Posttransl 88.1 0.64 1.4E-05 38.2 3.6 40 41-82 199-238 (271)
41 KOG0358 Chaperonin complex com 83.0 2.2 4.8E-05 37.7 4.7 50 8-57 115-166 (534)
42 KOG0363 Chaperonin complex com 81.0 3.4 7.4E-05 36.4 5.1 115 8-132 109-239 (527)
43 cd03334 Fab1_TCP TCP-1 like do 80.7 2.2 4.8E-05 34.6 3.7 66 60-134 21-98 (261)
44 PF07131 DUF1382: Protein of u 77.3 5.9 0.00013 25.9 4.2 42 15-56 4-45 (61)
45 KOG0357 Chaperonin complex com 64.4 8.8 0.00019 33.4 3.6 49 8-56 108-156 (400)
46 PF06577 DUF1134: Protein of u 53.5 62 0.0014 25.1 6.3 60 58-125 19-78 (160)
47 PRK06743 flagellar motor prote 49.0 35 0.00076 28.0 4.6 38 2-41 105-142 (254)
48 TIGR00244 transcriptional regu 40.2 56 0.0012 25.0 4.2 52 14-75 60-121 (147)
49 PF07582 AP_endonuc_2_N: AP en 36.6 35 0.00077 21.7 2.2 18 66-84 5-22 (55)
50 PF02429 PCP: Peridinin-chloro 31.9 86 0.0019 23.9 4.0 46 15-70 54-99 (145)
51 COG4816 EutL Ethanolamine util 31.3 49 0.0011 26.5 2.7 22 10-31 86-107 (219)
52 PF00923 Transaldolase: Transa 28.7 1.8E+02 0.0039 23.8 5.8 59 15-86 25-85 (287)
53 PF11113 Phage_head_chap: Head 28.1 1E+02 0.0022 19.9 3.3 38 79-119 6-43 (56)
54 cd01783 DAGK_delta_RA Ubiquiti 27.5 44 0.00096 23.8 1.7 23 53-75 20-42 (97)
55 PF03746 LamB_YcsF: LamB/YcsF 27.2 2E+02 0.0044 23.5 5.8 104 15-123 77-188 (242)
56 PRK08990 flagellar motor prote 26.9 1.3E+02 0.0028 24.6 4.6 35 8-42 109-143 (254)
57 COG1327 Predicted transcriptio 26.8 1.8E+02 0.004 22.4 5.1 53 13-75 59-121 (156)
58 PF05537 DUF759: Borrelia burg 25.1 33 0.00072 30.4 0.9 19 60-80 142-160 (431)
59 COG1512 Beta-propeller domains 24.6 88 0.0019 26.0 3.2 76 31-109 51-141 (271)
60 COG1291 MotA Flagellar motor c 24.3 1.1E+02 0.0025 25.4 3.8 66 3-70 110-187 (266)
61 PF11268 DUF3071: Protein of u 24.2 1.2E+02 0.0026 23.5 3.7 62 10-75 65-133 (170)
62 PF04810 zf-Sec23_Sec24: Sec23 23.3 49 0.0011 19.2 1.1 15 102-116 9-23 (40)
63 PRK08124 flagellar motor prote 22.8 1.6E+02 0.0035 24.0 4.4 34 8-41 113-146 (263)
64 PF08787 Alginate_lyase2: Algi 22.0 63 0.0014 25.7 1.9 26 98-123 23-49 (236)
65 COG4383 Mu-like prophage prote 21.5 93 0.002 27.8 2.9 48 60-115 115-165 (517)
66 COG0761 lytB 4-Hydroxy-3-methy 21.5 62 0.0013 27.4 1.8 34 15-48 7-40 (294)
67 PF04123 DUF373: Domain of unk 21.4 74 0.0016 27.3 2.3 57 31-95 56-118 (344)
68 PRK15455 PrkA family serine pr 21.1 42 0.00092 31.3 0.8 51 23-73 80-130 (644)
69 COG3060 MetJ Transcriptional r 20.8 33 0.00071 24.2 0.0 14 99-112 3-16 (105)
70 KOG0360 Chaperonin complex com 20.6 1.8E+02 0.0038 26.6 4.5 115 8-131 108-243 (545)
71 COG0462 PrsA Phosphoribosylpyr 20.6 40 0.00087 28.7 0.5 64 58-126 105-168 (314)
72 TIGR00989 3a0801s07tom40 mitoc 20.5 49 0.0011 25.6 0.9 19 94-112 24-45 (161)
No 1
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-42 Score=302.08 Aligned_cols=130 Identities=35% Similarity=0.552 Sum_probs=127.6
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhccCCChhhhHHHHHHHHHhccCCceEE
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMISTSEEIAQVATTSINGDKDIGALVARTIELVRKAEGHIF 81 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~~~~~i~~VAtisan~D~~iG~liaeA~~kVG~~dGvIt 81 (135)
..|| .+.+++|+||+++||||.+|++.+++.|+++|+||+++++|+|||+||||||.++|++|++||++||+ +|+||
T Consensus 113 ~~eg--~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~eeIaqVAtiSAngD~~ig~li~~a~~kvG~-~GVIt 189 (550)
T KOG0356|consen 113 AKEG--FEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTPEEIAQVATISANGDKEIGNLISDAMKKVGR-KGVIT 189 (550)
T ss_pred HHHH--HHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCCcHHHHHHHHHHHHHhCc-CCeEE
Confidence 4678 89999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred EecCCCCCeEEEEeeeeEecCccccceeeecCCCceEEeeceeEEEecccccC
Q 032735 82 ITEGKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 134 (135)
Q Consensus 82 vee~~~~~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~ILitd~kIs~ 134 (135)
|++|++..++|+++|||+|||||+||||+|+++.+.++|+||++|++|+||++
T Consensus 190 v~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~~ 242 (550)
T KOG0356|consen 190 VKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISS 242 (550)
T ss_pred eecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhhhhH
Confidence 99999999999999999999999999999999999999999999999999985
No 2
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=99.97 E-value=9.6e-32 Score=239.02 Aligned_cols=129 Identities=23% Similarity=0.422 Sum_probs=124.4
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhccCCChhhhHHHHHHHHHhccCCceEE
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMISTSEEIAQVATTSINGDKDIGALVARTIELVRKAEGHIF 81 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~~~~~i~~VAtisan~D~~iG~liaeA~~kVG~~dGvIt 81 (135)
++|| .+++++|+||..|++|+++|.+.+++.|+++|+|+++ ++|.+||++|+|+|+.+|+||++|+.+||+ +|+|+
T Consensus 155 L~ea--~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d-~~L~~vA~tS~~~~~~i~~liaeAv~~Vg~-~g~i~ 230 (600)
T PLN03167 155 IAEG--VKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGR-KGVVT 230 (600)
T ss_pred HHHH--HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcc-CCcEE
Confidence 5677 8999999999999999999999999999999999976 689999999999999999999999999999 99999
Q ss_pred EecCCCCCeEEEEeeeeEecCccccceeeecCCCceEEeeceeEEEecccccC
Q 032735 82 ITEGKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 134 (135)
Q Consensus 82 vee~~~~~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~ILitd~kIs~ 134 (135)
+++|++.++++++++||.||+||+||||+||+++|..+|+||+||++|.+|++
T Consensus 231 v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~ 283 (600)
T PLN03167 231 LEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITN 283 (600)
T ss_pred eccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccccCC
Confidence 99999999999999999999999999999999999999999999999999875
No 3
>PRK14104 chaperonin GroEL; Provisional
Probab=99.96 E-value=1.1e-29 Score=223.63 Aligned_cols=130 Identities=30% Similarity=0.535 Sum_probs=125.1
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhccCCChhhhHHHHHHHHHhccCCceEE
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMISTSEEIAQVATTSINGDKDIGALVARTIELVRKAEGHIF 81 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~~~~~i~~VAtisan~D~~iG~liaeA~~kVG~~dGvIt 81 (135)
+++| .+++++|+||..|++|+++|.+.+++.|+++|+|+++.+++.+||++|+++|+.+|+++++|+.+||. +|+|+
T Consensus 100 L~~a--~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~lv~~Av~~vg~-~g~i~ 176 (546)
T PRK14104 100 VREG--AKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFLADAMKKVGN-EGVIT 176 (546)
T ss_pred HHHH--HHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhcc-CCcee
Confidence 5677 89999999999999999999999999999999999888899999999999999999999999999999 99999
Q ss_pred EecCCCCCeEEEEeeeeEecCccccceeeecCCCceEEeeceeEEEecccccC
Q 032735 82 ITEGKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 134 (135)
Q Consensus 82 vee~~~~~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~ILitd~kIs~ 134 (135)
++++++.++++++++|+.||+||+||||+|++++|..+++||+||++|.+|++
T Consensus 177 v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i~~ 229 (546)
T PRK14104 177 VEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSS 229 (546)
T ss_pred eEecccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhhhcC
Confidence 99998888999999999999999999999999999999999999999999875
No 4
>CHL00093 groEL chaperonin GroEL
Probab=99.96 E-value=1.7e-29 Score=221.42 Aligned_cols=130 Identities=26% Similarity=0.481 Sum_probs=125.4
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhccCCChhhhHHHHHHHHHhccCCceEE
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMISTSEEIAQVATTSINGDKDIGALVARTIELVRKAEGHIF 81 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~~~~~i~~VAtisan~D~~iG~liaeA~~kVG~~dGvIt 81 (135)
.+|| .+.+.+|+||..|++|+++|.+.+++.|+++|+|+++.+++.+||++|+++|+.+|+|+++|+.+||. +|.|+
T Consensus 99 L~~a--~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~d~~~L~~VA~ts~~~~~~l~~lv~eAv~~vg~-~g~i~ 175 (529)
T CHL00093 99 VKQG--MKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVEDIQAITQVASISAGNDEEVGSMIADAIEKVGR-EGVIS 175 (529)
T ss_pred HHHH--HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhcc-CCcee
Confidence 4677 79999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred EecCCCCCeEEEEeeeeEecCccccceeeecCCCceEEeeceeEEEecccccC
Q 032735 82 ITEGKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 134 (135)
Q Consensus 82 vee~~~~~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~ILitd~kIs~ 134 (135)
+++|++..+++++++|++||+||+||||+|++++|.++|+||+||++|.+|+.
T Consensus 176 ~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~ 228 (529)
T CHL00093 176 LEEGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITL 228 (529)
T ss_pred ecCCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCc
Confidence 99999989999999999999999999999999999999999999999999874
No 5
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=99.96 E-value=2.6e-29 Score=220.83 Aligned_cols=130 Identities=32% Similarity=0.527 Sum_probs=124.8
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhccCCChhhhHHHHHHHHHhccCCceEE
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMISTSEEIAQVATTSINGDKDIGALVARTIELVRKAEGHIF 81 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~~~~~i~~VAtisan~D~~iG~liaeA~~kVG~~dGvIt 81 (135)
.+++ .+++++|+||..|++|+++|.+.+++.|+++|+|+++.+++.+||++|+++|+.+|+++++|+.+||. +|+|+
T Consensus 100 L~~a--~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li~eA~~~vg~-~g~i~ 176 (545)
T PRK12852 100 VREG--AKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAIGKMIAQAMQKVGN-EGVIT 176 (545)
T ss_pred HHHH--HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhcCChHHHHHHHHHHHHHhcc-CCcee
Confidence 4567 78999999999999999999999999999999999988899999999999999999999999999999 99999
Q ss_pred EecCCCCCeEEEEeeeeEecCccccceeeecCCCceEEeeceeEEEecccccC
Q 032735 82 ITEGKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 134 (135)
Q Consensus 82 vee~~~~~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~ILitd~kIs~ 134 (135)
+++|++..+++++++||+||+||+||||+||+++|..+|+||+||++|.+|++
T Consensus 177 v~~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~ 229 (545)
T PRK12852 177 VEENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSG 229 (545)
T ss_pred eecCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCccCC
Confidence 99999888999999999999999999999999999999999999999999875
No 6
>PTZ00114 Heat shock protein 60; Provisional
Probab=99.96 E-value=1e-28 Score=217.63 Aligned_cols=130 Identities=32% Similarity=0.521 Sum_probs=125.3
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhccCCChhhhHHHHHHHHHhccCCceEE
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMISTSEEIAQVATTSINGDKDIGALVARTIELVRKAEGHIF 81 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~~~~~i~~VAtisan~D~~iG~liaeA~~kVG~~dGvIt 81 (135)
.+++ .+++.+|+||..|++|+++|.+.+++.|+++|+|+++.+++.+||++|+++|+.+|+++++|+.++|. +|+|+
T Consensus 111 L~~a--~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~eAv~~vg~-~g~I~ 187 (555)
T PTZ00114 111 FREG--CKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILNVATISANGDVEIGSLIADAMDKVGK-DGTIT 187 (555)
T ss_pred HHHH--HHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCcEE
Confidence 4677 79999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred EecCCCCCeEEEEeeeeEecCccccceeeecCCCceEEeeceeEEEecccccC
Q 032735 82 ITEGKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 134 (135)
Q Consensus 82 vee~~~~~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~ILitd~kIs~ 134 (135)
+++|.+.++++++++||.||+||+||||+||+++|..+++||+||++|.+|++
T Consensus 188 ~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~~ 240 (555)
T PTZ00114 188 VEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISS 240 (555)
T ss_pred EcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCCC
Confidence 99999999999999999999999999999999999999999999999999863
No 7
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.4e-28 Score=212.41 Aligned_cols=126 Identities=30% Similarity=0.465 Sum_probs=120.4
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhcccccCCHH-----HHHHHHhhccCCChhhhHHHHHHHHHhccC
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMISTSE-----EIAQVATTSINGDKDIGALVARTIELVRKA 76 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~~~~-----~i~~VAtisan~D~~iG~liaeA~~kVG~~ 76 (135)
++|| ++++++|+||+.|++|+++|++.+++.|++.|+|+++.+ .+.+++++++++|..+|+++++||.+||..
T Consensus 96 l~ea--~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~~~~~t~v~sk~~~~~~~i~~lv~~Av~~v~~~ 173 (524)
T COG0459 96 LKEA--EKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEELKIAITSVASKSANSDEEIGELVVEAVEKVGKE 173 (524)
T ss_pred HHHH--HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhhheeeeeeccChHHHHHHHHHHHHHhccc
Confidence 5788 899999999999999999999999999999999999888 899999999998999999999999999994
Q ss_pred ----CceEEEecCCCCCeEEEEeeeeEecCccccceeeecCCCceEEeeceeEEEecccccC
Q 032735 77 ----EGHIFITEGKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 134 (135)
Q Consensus 77 ----dGvItvee~~~~~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~ILitd~kIs~ 134 (135)
+|+++++++.+..+++++++||+||+||+||||++| .+++|||||++|+||+.
T Consensus 174 ~~d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~-----~~~e~~~Ili~d~~l~~ 230 (524)
T COG0459 174 QSDLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPD-----KRLENPKILLLDKKLEI 230 (524)
T ss_pred ccccCCeEEEEecCCCccceEEEeeEEecCCccCCCCCCc-----cccccceEEEEcccccc
Confidence 799999999999999999999999999999999998 68889999999999986
No 8
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=99.94 E-value=2.5e-26 Score=201.17 Aligned_cols=130 Identities=32% Similarity=0.508 Sum_probs=124.7
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhccCCChhhhHHHHHHHHHhccCCceEE
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMISTSEEIAQVATTSINGDKDIGALVARTIELVRKAEGHIF 81 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~~~~~i~~VAtisan~D~~iG~liaeA~~kVG~~dGvIt 81 (135)
.+++ .+++.+|+||..+.+|+++|.+.+++.|+++|+|+++.+++.+||.+|+++|+.+++++++|+.++|. +|.|.
T Consensus 98 l~~a--~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v~~-~~~i~ 174 (524)
T TIGR02348 98 VKEG--LKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVKGKKEIAQVATISANNDEEIGSLIAEAMEKVGK-DGVIT 174 (524)
T ss_pred HHHH--HHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhCc-CCcEe
Confidence 4566 78999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred EecCCCCCeEEEEeeeeEecCccccceeeecCCCceEEeeceeEEEecccccC
Q 032735 82 ITEGKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 134 (135)
Q Consensus 82 vee~~~~~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~ILitd~kIs~ 134 (135)
|+.|++.++++++++|+.||+||.||||++++++|...++||+||++|.+|++
T Consensus 175 v~~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~ 227 (524)
T TIGR02348 175 VEESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISN 227 (524)
T ss_pred eecCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCcCC
Confidence 99999888999999999999999999999999999999999999999999875
No 9
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=99.94 E-value=3.3e-26 Score=201.42 Aligned_cols=130 Identities=34% Similarity=0.520 Sum_probs=124.4
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhccCCChhhhHHHHHHHHHhccCCceEE
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMISTSEEIAQVATTSINGDKDIGALVARTIELVRKAEGHIF 81 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~~~~~i~~VAtisan~D~~iG~liaeA~~kVG~~dGvIt 81 (135)
.+++ .+++.+|++|..|.+|+++|.+.+++.|+++|+|+++.+++.+||++|+++|+.+++++++|+.++|. +|.|+
T Consensus 99 L~~a--~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~~~~~l~~va~ts~~~~~~ls~lv~~Av~~v~~-~g~i~ 175 (542)
T PRK00013 99 VREG--LKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVEDKEEIAQVATISANGDEEIGKLIAEAMEKVGK-EGVIT 175 (542)
T ss_pred HHHH--HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHhCc-CCcEE
Confidence 3556 78999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred EecCCCCCeEEEEeeeeEecCccccceeeecCCCceEEeeceeEEEecccccC
Q 032735 82 ITEGKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 134 (135)
Q Consensus 82 vee~~~~~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~ILitd~kIs~ 134 (135)
|+.+++..+++++++|+.||+||+||||++++++|...++||+||++|.+|++
T Consensus 176 i~~~~~~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~~ 228 (542)
T PRK00013 176 VEESKGFETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISN 228 (542)
T ss_pred EEEcCCCCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCccCC
Confidence 99999988999999999999999999999999999999999999999998875
No 10
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=99.94 E-value=3.5e-26 Score=201.28 Aligned_cols=130 Identities=35% Similarity=0.579 Sum_probs=124.6
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhccCCChhhhHHHHHHHHHhccCCceEE
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMISTSEEIAQVATTSINGDKDIGALVARTIELVRKAEGHIF 81 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~~~~~i~~VAtisan~D~~iG~liaeA~~kVG~~dGvIt 81 (135)
.+|+ .+++++|+||..|.+|+++|.+.+++.|+++|+|+++.+++.+||++|+++|+.+++++++|+.+||. +|.|.
T Consensus 100 L~~a--~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~lv~eAv~~vg~-~g~i~ 176 (544)
T PRK12850 100 VREG--AKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVTSSKEIAQVATISANGDESIGEMIAEAMDKVGK-EGVIT 176 (544)
T ss_pred HHHH--HHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-cCcee
Confidence 4567 78999999999999999999999999999999999989999999999999999999999999999999 99999
Q ss_pred EecCCCCCeEEEEeeeeEecCccccceeeecCCCceEEeeceeEEEecccccC
Q 032735 82 ITEGKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 134 (135)
Q Consensus 82 vee~~~~~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~ILitd~kIs~ 134 (135)
++.++..++++++++|+.||+||.||||++++++|..+++||+||++|.+|++
T Consensus 177 v~~~~~~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~ 229 (544)
T PRK12850 177 VEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISN 229 (544)
T ss_pred eEEccccCcceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEecccCC
Confidence 99998888999999999999999999999999999999999999999998864
No 11
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=99.93 E-value=5e-26 Score=200.18 Aligned_cols=130 Identities=35% Similarity=0.513 Sum_probs=124.2
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhccCCChhhhHHHHHHHHHhccCCceEE
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMISTSEEIAQVATTSINGDKDIGALVARTIELVRKAEGHIF 81 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~~~~~i~~VAtisan~D~~iG~liaeA~~kVG~~dGvIt 81 (135)
.+|+ .+++.+|+||..|.+|+++|.+.+++.|+++|+|+++.+++.+||++|+++|+.+++++++|+.++|. +|.|.
T Consensus 100 L~~a--~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~~~l~~va~~s~~~~~~l~~lv~~Av~~vg~-~g~i~ 176 (541)
T PRK12851 100 VREG--AKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTTNAEIAQVATISANGDAEIGRLVAEAMEKVGN-EGVIT 176 (541)
T ss_pred HHHH--HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhcc-cCceE
Confidence 3566 78999999999999999999999999999999999989999999999999999999999999999999 99999
Q ss_pred EecCCCCCeEEEEeeeeEecCccccceeeecCCCceEEeeceeEEEecccccC
Q 032735 82 ITEGKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 134 (135)
Q Consensus 82 vee~~~~~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~ILitd~kIs~ 134 (135)
|+.+++..+++++++|+.||+||.||||++++++|..+++||+||++|.+|++
T Consensus 177 i~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~~ 229 (541)
T PRK12851 177 VEESKTAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISN 229 (541)
T ss_pred EEEccCCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcCc
Confidence 99999888999999999999999999999999999999999999999999864
No 12
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=99.93 E-value=2.3e-25 Score=196.15 Aligned_cols=130 Identities=35% Similarity=0.527 Sum_probs=124.5
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhccCCChhhhHHHHHHHHHhccCCceEE
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMISTSEEIAQVATTSINGDKDIGALVARTIELVRKAEGHIF 81 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~~~~~i~~VAtisan~D~~iG~liaeA~~kVG~~dGvIt 81 (135)
.+++ .+++.+|++|..|.+|+++|.+.+++.|+++|+|+++.+++.+||++|+++|+.+++++++|+.++|. +|.|.
T Consensus 99 L~~a--~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~Av~~v~~-~g~i~ 175 (542)
T PRK12849 99 VQEG--LKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGSEEIAQVATISANGDEEIGELIAEAMEKVGK-DGVIT 175 (542)
T ss_pred HHHH--HHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc-CCcEe
Confidence 3566 78999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred EecCCCCCeEEEEeeeeEecCccccceeeecCCCceEEeeceeEEEecccccC
Q 032735 82 ITEGKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 134 (135)
Q Consensus 82 vee~~~~~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~ILitd~kIs~ 134 (135)
++.|.+.++++++++|+.||+||.+|||++++++|...++||+||++|.+|++
T Consensus 176 i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~ 228 (542)
T PRK12849 176 VEESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISS 228 (542)
T ss_pred EEeCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCcCC
Confidence 99999988999999999999999999999999999999999999999999875
No 13
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=99.92 E-value=9e-25 Score=191.36 Aligned_cols=130 Identities=36% Similarity=0.563 Sum_probs=124.2
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhccCCChhhhHHHHHHHHHhccCCceEE
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMISTSEEIAQVATTSINGDKDIGALVARTIELVRKAEGHIF 81 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~~~~~i~~VAtisan~D~~iG~liaeA~~kVG~~dGvIt 81 (135)
.+++ .+.+..|++|..+.+|+++|.+.+++.|+++++|+++.+++.+||.+|+|+|+.+++++++|+.++|. +|.|.
T Consensus 97 l~~~--~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v~~-~~~i~ 173 (520)
T cd03344 97 IKEG--LKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKVGK-DGVIT 173 (520)
T ss_pred HHHH--HHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc-CCcEE
Confidence 3556 78999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred EecCCCCCeEEEEeeeeEecCccccceeeecCCCceEEeeceeEEEecccccC
Q 032735 82 ITEGKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 134 (135)
Q Consensus 82 vee~~~~~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~ILitd~kIs~ 134 (135)
++.|.+..+++++++|+.||+||++|||++++++|...++||+||++|.+|++
T Consensus 174 v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~ 226 (520)
T cd03344 174 VEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISS 226 (520)
T ss_pred EEeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCCCC
Confidence 99999999999999999999999999999999999999999999999998864
No 14
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.81 E-value=5.6e-20 Score=160.77 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=109.4
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhcccccC-----CHHHHHHHHhhccC------CChhhhHHHHHHH
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMIS-----TSEEIAQVATTSIN------GDKDIGALVARTI 70 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~-----~~~~i~~VAtisan------~D~~iG~liaeA~ 70 (135)
++++ ++.+++|++|..+++|+++|.+.+++.|+++|+|++ +.+.+.+||++|.+ +|+.+++++++|+
T Consensus 102 l~~~--~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l~~l~~~A~ 179 (522)
T TIGR02345 102 LKEA--KPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSKLIAHEKEFFSKMIVDAV 179 (522)
T ss_pred HHhH--HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 4677 899999999999999999999999999999999997 56889999998865 7899999999999
Q ss_pred HHhccCC-------ceEEEecCCCCCeEEEEeeeeEecCccccceeeecCCCceEEeeceeEEEecccccC
Q 032735 71 ELVRKAE-------GHIFITEGKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 134 (135)
Q Consensus 71 ~kVG~~d-------GvItvee~~~~~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~ILitd~kIs~ 134 (135)
.++|+ + +++++ +|.+..+. .+++|+.||+||+||||.+++ ..++||+||++|.+|+.
T Consensus 180 ~~v~~-~~~~~~~I~i~ki-~Ggs~~ds-~~v~Giv~~~~~~~~~~~~~~----~~~~n~kIll~~~~Le~ 243 (522)
T TIGR02345 180 LQLDI-DDLDLKLIGVKKV-QGGSLQDS-VLVNGVAFKKTFSYAGFEQQP----KKFANPKILLLNVELEL 243 (522)
T ss_pred HHHhh-ccCChhHheEEee-cCCCHHhc-ceecceEEecccCccccccCC----ceeccceEEEEecCccc
Confidence 99998 7 78888 56555554 469999999999999998876 34889999999998864
No 15
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.81 E-value=1.3e-19 Score=157.37 Aligned_cols=121 Identities=15% Similarity=0.186 Sum_probs=109.0
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhcccccC---CHHHHHHHHhhccCCC------hhhhHHHHHHHHH
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMIS---TSEEIAQVATTSINGD------KDIGALVARTIEL 72 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~---~~~~i~~VAtisan~D------~~iG~liaeA~~k 72 (135)
++++ .+.+.+|++|+.+++|+++|.+.+++.|+++|+|++ +.+.+.+||++|++++ +.+++++++|+.+
T Consensus 97 l~~a--~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~ 174 (484)
T cd03342 97 LKQA--ERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLTEIVVDAVLA 174 (484)
T ss_pred HHHH--HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHH
Confidence 4677 899999999999999999999999999999999997 8899999999999875 8899999999999
Q ss_pred hccCCc---------eEEEecCCCCCeEEEEeeeeEecCccccceeeecCCCceEEeeceeEEEecccccC
Q 032735 73 VRKAEG---------HIFITEGKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 134 (135)
Q Consensus 73 VG~~dG---------vItvee~~~~~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~ILitd~kIs~ 134 (135)
+|+ +| ++.++.| ..++.++++|+.||+||.|||| ...++||+||++|.+|+.
T Consensus 175 v~~-~~~~~~~~~I~i~ki~gg--s~~ds~~i~G~~~~~~~~~~~m-------~~~~~n~~Ill~~~~le~ 235 (484)
T cd03342 175 IYK-PDEPIDLHMVEIMQMQHK--SDSDTKLIRGLVLDHGARHPDM-------PKRVENAYILTCNVSLEY 235 (484)
T ss_pred Hhh-cCCccChhHeEEEEecCC--ChhhceEEeeEEEecCCCCCCC-------CccccCceEEEEeCCCCC
Confidence 999 98 6666655 4568999999999999999998 335789999999999865
No 16
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=99.76 E-value=1.4e-18 Score=151.34 Aligned_cols=121 Identities=19% Similarity=0.245 Sum_probs=107.8
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhcccccC--CHHHHHHHHhhccCCC------hhhhHHHHHHHHHh
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMIS--TSEEIAQVATTSINGD------KDIGALVARTIELV 73 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~--~~~~i~~VAtisan~D------~~iG~liaeA~~kV 73 (135)
++++ ++.+.+|.+|..+++|+++|.+.+++.|+++|+|++ +.+.+.+||++|.+++ +.+++++++|+.++
T Consensus 100 l~~~--~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v 177 (517)
T cd03343 100 LEKA--EDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQV 177 (517)
T ss_pred HHHH--HHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHh
Confidence 4566 789999999999999999999999999999999996 7889999999999876 88999999999999
Q ss_pred ccCCce---------EEE--ecCCCCCeEEEEeeeeEecCccccceeeecCCCceEEeeceeEEEeccccc
Q 032735 74 RKAEGH---------IFI--TEGKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFR 133 (135)
Q Consensus 74 G~~dGv---------Itv--ee~~~~~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~ILitd~kIs 133 (135)
|. +|. |.| ..|.+.. +.++++|+.|++||+||||. ..++||+||++|.+++
T Consensus 178 ~~-~~~~~~~~~~~~I~i~k~~Ggs~~-ds~lv~G~v~~~~~~~~~m~-------~~~~n~~Illl~~~Le 239 (517)
T cd03343 178 AE-KRDGKYVVDLDNIKIEKKTGGSVD-DTELIRGIVIDKEVVHPGMP-------KRVENAKIALLDAPLE 239 (517)
T ss_pred hh-ccCCCccccHHHeeEEeecCcCHH-HcceeeeEEEeccCCCCCCc-------cccCCCcEEEEecccc
Confidence 98 875 888 5665554 78999999999999999982 4579999999999863
No 17
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.75 E-value=3.9e-18 Score=148.62 Aligned_cols=124 Identities=16% Similarity=0.101 Sum_probs=107.4
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhcccccC--CHHHHHHHHhhccC------CChhhhHHHHHHHHHh
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMIS--TSEEIAQVATTSIN------GDKDIGALVARTIELV 73 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~--~~~~i~~VAtisan------~D~~iG~liaeA~~kV 73 (135)
+++| .+.+..|++|..+++|+++|.+.+++.|+++|.|++ +.+++.+||++|+| +++.+|+++++|+.+|
T Consensus 93 l~~~--~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~li~~A~~~v 170 (515)
T cd03338 93 LSAC--ESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKV 170 (515)
T ss_pred HHHH--HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHh
Confidence 4567 889999999999999999999999999999999996 78899999999998 5788999999999999
Q ss_pred ccCCce----------EEEecCCCCCeEEEEeeeeEecCccccc----eeeecCCC---------ceEEeeceeEEEecc
Q 032735 74 RKAEGH----------IFITEGKEPGVKLNLYSGFKLDWGYSSS----CFVTNKKK---------KLCFQSSTYLFLYGE 130 (135)
Q Consensus 74 G~~dGv----------Itvee~~~~~~~le~~eG~~fd~GYlSp----yfvTd~~~---------~~~~l~~p~ILitd~ 130 (135)
|+ +|. |....|.+..+. ++++|+.|++||.|| +|++|+.. .+.++++++ +++|.
T Consensus 171 ~~-~~~~~~~d~~~i~i~~~~Ggs~~ds-~lv~Giv~~k~~~~~~~~p~~i~n~ki~ll~~~le~~~~~~~~~~-~i~~~ 247 (515)
T cd03338 171 ID-PATATNVDLKDIRIVKKLGGTIEDT-ELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTDMDNNI-VVNDY 247 (515)
T ss_pred hc-ccccCcCCHHHeEEEEecCCChhhc-eeeeeEEEeccccCcCCCCccccCCcEEEEeccccccccccCceE-EeCCH
Confidence 99 985 666677776665 999999999999995 59888776 446777777 55663
No 18
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.74 E-value=7.6e-18 Score=148.03 Aligned_cols=123 Identities=16% Similarity=0.228 Sum_probs=106.7
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhccccc---CCHHHHHHHHhhccCC------ChhhhHHHHHHHHH
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMI---STSEEIAQVATTSING------DKDIGALVARTIEL 72 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v---~~~~~i~~VAtisan~------D~~iG~liaeA~~k 72 (135)
++++ ++++.+|++|..+++|+++|.+.+++.|++++.|+ .+.+.+.+||.+|.++ ++.+++++++|+.+
T Consensus 101 l~~a--~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~iv~~Av~~ 178 (531)
T TIGR02347 101 LKQA--ERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELLLNVARTSLRTKLPIDLADQLTEIVVDAVLA 178 (531)
T ss_pred HHHH--HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Confidence 4677 89999999999999999999999999999999774 5788999999988865 88999999999999
Q ss_pred hccCCce-EE---Ee---cCCCCCeEEEEeeeeEecCccccceeeecCCCceEEeeceeEEEecccccC
Q 032735 73 VRKAEGH-IF---IT---EGKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 134 (135)
Q Consensus 73 VG~~dGv-It---ve---e~~~~~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~ILitd~kIs~ 134 (135)
+|+ +|. |. |+ ...+..++.++++|+.||+||.+|||.+ .++||+||++|.+|+.
T Consensus 179 v~~-~~~~i~~~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~~~-------~~~n~~Ill~~~~le~ 239 (531)
T TIGR02347 179 IKK-DGEQIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPDMPR-------RVKNAYILTCNVSLEY 239 (531)
T ss_pred Hhh-cCCCCChhHeEEEEecCCCccccEEEeeEEEecCcCCCCCce-------eccCceEEEEeCCCCC
Confidence 999 886 44 23 3335578899999999999999999843 6899999999999864
No 19
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.73 E-value=1.5e-17 Score=145.96 Aligned_cols=122 Identities=15% Similarity=0.177 Sum_probs=108.2
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhc-ccccC--CHHHHHHHHhhccC------CChhhhHHHHHHHHH
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRS-AQMIS--TSEEIAQVATTSIN------GDKDIGALVARTIEL 72 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~-a~~v~--~~~~i~~VAtisan------~D~~iG~liaeA~~k 72 (135)
++++ ++.+.+|++|+.+++|+++|.+.+++.|+++ ++|++ +.+.+.+||++|.+ +++.+++++++|+.+
T Consensus 97 l~~a--~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~A~~~ 174 (536)
T TIGR02340 97 LKRA--DELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFFSNIVVDAVLA 174 (536)
T ss_pred HHHH--HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Confidence 4567 8999999999999999999999999999985 99997 78899999998876 689999999999999
Q ss_pred hc---cCCceEEE---------ecCCCCCeEEEEeeeeEecCccccceeeecCCCceEEeeceeEEEecccccC
Q 032735 73 VR---KAEGHIFI---------TEGKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 134 (135)
Q Consensus 73 VG---~~dGvItv---------ee~~~~~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~ILitd~kIs~ 134 (135)
+| . +|.+++ ..|.+. ++.++++|+.||+||.|| +|...++||+||++|.+|+.
T Consensus 175 v~~~~~-~g~~~~~~~~I~i~k~~G~s~-~~s~~i~Gi~i~~~~~~~-------~m~~~~~n~kIli~~~~L~~ 239 (536)
T TIGR02340 175 VKMTNE-NGETKYPIKAVNILKAHGGSA-RESYLVKGYALNCTRASQ-------QMPKRIKKAKIACLDFNLQK 239 (536)
T ss_pred Hhcccc-cCccccchHHeEEEEecCCCc-cccEEEEEEEEecccCCC-------CCcceecCCcEEEEecCCCC
Confidence 97 5 687655 567666 789999999999999997 57778999999999999864
No 20
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=99.72 E-value=4e-17 Score=140.29 Aligned_cols=123 Identities=31% Similarity=0.342 Sum_probs=108.6
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhcccc--cCCHHHHHHHHhhccC------CChhhhHHHHHHHHHh
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQM--ISTSEEIAQVATTSIN------GDKDIGALVARTIELV 73 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~--v~~~~~i~~VAtisan------~D~~iG~liaeA~~kV 73 (135)
++++ ++.+.+|++|..+++|+++|.+.+++.|+++++| +.+.+.+.+||.+|.+ +|+.+++++++|+.++
T Consensus 93 l~~~--~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~l~~~Ai~~v 170 (464)
T cd00309 93 LKEA--EKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKV 170 (464)
T ss_pred HHHH--HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHhHhcccccccccchHHHHHHHHHHHHHh
Confidence 4677 8999999999999999999999999999999999 7788999999999998 7999999999999999
Q ss_pred ccC-----CceEEEecCCCCC-eEEEEeeeeEecCccccceeeecCCCceEEeeceeEEEeccccc
Q 032735 74 RKA-----EGHIFITEGKEPG-VKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFR 133 (135)
Q Consensus 74 G~~-----dGvItvee~~~~~-~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~ILitd~kIs 133 (135)
|+. .+.|.|+...+.. .+..++.|+.|++||.+||| ..+++||+||++|.+|+
T Consensus 171 ~~~~~~~~~~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m-------~~~~~n~~Ili~~~~Le 229 (464)
T cd00309 171 GKENGDVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYM-------PKRLENAKILLLDCKLE 229 (464)
T ss_pred ccccCccccceEEEEecCCCCcccceeeeeEEEecCCCCCCC-------ceeecCceEEEEecCcc
Confidence 872 3789999876621 34556779999999999998 55899999999999876
No 21
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.72 E-value=2.2e-17 Score=144.28 Aligned_cols=124 Identities=17% Similarity=0.196 Sum_probs=106.3
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhcccccCC------HHHHHHHHhhccC------CChhhhHHHHHH
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMIST------SEEIAQVATTSIN------GDKDIGALVART 69 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~~------~~~i~~VAtisan------~D~~iG~liaeA 69 (135)
++++ ++.+..|++|..+.+|+++|.+.+++.|+++|+|+++ .+.+.+||..|.+ +++.+++++++|
T Consensus 101 l~~~--~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~l~~l~~~A 178 (522)
T cd03340 101 LKEA--KPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEFFAKMVVDA 178 (522)
T ss_pred HHHH--HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence 4567 8899999999999999999999999999999999975 5669999988744 689999999999
Q ss_pred HHHhccCCc------eEEEecCCCCCeEEEEeeeeEecCccccceeeecCCCceEEeeceeEEEecccccC
Q 032735 70 IELVRKAEG------HIFITEGKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 134 (135)
Q Consensus 70 ~~kVG~~dG------vItvee~~~~~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~ILitd~kIs~ 134 (135)
+.++|+ ++ ++.+ .|... .+.++++|+.|++||.+|||.+++.+ ++||+||++|.+++.
T Consensus 179 ~~~v~~-~~~~~~I~i~~i-~Ggs~-~ds~lv~Giv~~k~~~~~~~~~~~~~----~~n~kIll~~~~Le~ 242 (522)
T cd03340 179 VLSLDD-DLDLDMIGIKKV-PGGSL-EDSQLVNGVAFKKTFSYAGFEQQPKK----FKNPKILLLNVELEL 242 (522)
T ss_pred HHHhcc-cCChhHheEeee-cCCCh-hhceeeeeEEEecccCccccccCCcc----ccCCeEEEEeCCCCC
Confidence 999999 99 6666 44443 34667999999999999999887644 899999999998753
No 22
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=99.71 E-value=9.4e-18 Score=147.24 Aligned_cols=125 Identities=14% Similarity=0.128 Sum_probs=113.4
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhcccccCC-----HHHHHHHHh--hccCCChhhhHHHHHHHHHhc
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMIST-----SEEIAQVAT--TSINGDKDIGALVARTIELVR 74 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~~-----~~~i~~VAt--isan~D~~iG~liaeA~~kVG 74 (135)
++++ .+++..|++|..|.+|+++|.+.+++.|+++++|+++ .+.+.+||. ++++ +++..+++|.+++
T Consensus 112 l~~a--~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~t~l~sk----~~~~~~~~l~~i~ 185 (533)
T PTZ00212 112 LREA--EKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLSSK----LLTVEKDHFAKLA 185 (533)
T ss_pred HHHH--HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHHHHHHhccc----ccchhHHHHHHHH
Confidence 4567 8999999999999999999999999999999999975 578999997 6664 8889999999999
Q ss_pred cCCceEEEecCCCCCe-EEEEeeeeEecCccccceeeecCC---CceEEeeceeEEEeccccc
Q 032735 75 KAEGHIFITEGKEPGV-KLNLYSGFKLDWGYSSSCFVTNKK---KKLCFQSSTYLFLYGETFR 133 (135)
Q Consensus 75 ~~dGvItvee~~~~~~-~le~~eG~~fd~GYlSpyfvTd~~---~~~~~l~~p~ILitd~kIs 133 (135)
. +|+++++++...+. .+..+.|.+|+++|++|||+++.+ .|...++||+||++|.+|+
T Consensus 186 ~-~av~~i~~~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~~~~~~i~n~kIll~~~~Le 247 (533)
T PTZ00212 186 V-DAVLRLKGSGNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGVGQPKRLENCKILVANTPMD 247 (533)
T ss_pred H-HHHHHHhccCCccceEEEEecCcCccccEEEEeEEEecccCCCCCccccCCcEEEEeCCCC
Confidence 9 99999998777665 788889999999999999999988 8899999999999999984
No 23
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=99.70 E-value=5.3e-17 Score=141.78 Aligned_cols=122 Identities=20% Similarity=0.257 Sum_probs=104.5
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhcccccCC--HHHHHHHHhhccCCC-------hhhhHHHHHHHHH
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMIST--SEEIAQVATTSINGD-------KDIGALVARTIEL 72 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~~--~~~i~~VAtisan~D-------~~iG~liaeA~~k 72 (135)
++++ ++.+.+|++|..+++|+++|.+.+++.|+++|+|++. .+.+.+||.+|.+++ +.+++++++|+.+
T Consensus 101 l~~~--~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~ 178 (519)
T TIGR02339 101 LEKA--EDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQ 178 (519)
T ss_pred HHHH--HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHH
Confidence 4567 8999999999999999999999999999999999964 588999999999765 6799999999999
Q ss_pred hcc--CCceEE-------E--ecCCCCCeEEEEeeeeEecCccccceeeecCCCceEEeeceeEEEeccccc
Q 032735 73 VRK--AEGHIF-------I--TEGKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFR 133 (135)
Q Consensus 73 VG~--~dGvIt-------v--ee~~~~~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~ILitd~kIs 133 (135)
+|+ .+|.++ | ..|.... +.++++|+.|++||++| +|...++||+||++|.+++
T Consensus 179 v~~~~~~g~~~~~~~~I~i~k~~Ggs~~-ds~lv~G~vi~~~~~~~-------~m~~~i~n~kIlll~~~Le 242 (519)
T TIGR02339 179 VAEKRGDGKYYVDLDNIKIEKKTGGSID-DTELVEGIVVDKEPVHP-------GMPKRVKNAKIALLDAPLE 242 (519)
T ss_pred HhhhccCCCcccCHHHeEEEEccCcChh-cceeEeeEEEecCCCCC-------CCccccCCCcEEEEecccc
Confidence 993 178633 5 4555444 89999999999999998 4666799999999999864
No 24
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.67 E-value=7.8e-17 Score=141.17 Aligned_cols=127 Identities=14% Similarity=0.163 Sum_probs=113.0
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhcccccCC-----HHHHHHHHhhccCCChhhhHHHHHHHHHhccC
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMIST-----SEEIAQVATTSINGDKDIGALVARTIELVRKA 76 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~~-----~~~i~~VAtisan~D~~iG~liaeA~~kVG~~ 76 (135)
.+++ .+.+.+|++|..+++|+++|.+.+++.|+++++|+++ .+.+.+||+.|.+ + .++...+++|.+++.
T Consensus 101 l~~a--~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~-s-ki~~~~~~~~s~l~~- 175 (519)
T TIGR02341 101 LREA--EKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLS-S-KILSQHKDHFAQLAV- 175 (519)
T ss_pred HHHH--HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhh-h-hhhhhHHHHHHHHHH-
Confidence 4567 8999999999999999999999999999999999964 4789999988886 4 689999999999999
Q ss_pred CceEEEecCCCCCeEEEEe--eeeEecCccccceeeecCC---CceEEeeceeEEEecccccC
Q 032735 77 EGHIFITEGKEPGVKLNLY--SGFKLDWGYSSSCFVTNKK---KKLCFQSSTYLFLYGETFRL 134 (135)
Q Consensus 77 dGvItvee~~~~~~~le~~--eG~~fd~GYlSpyfvTd~~---~~~~~l~~p~ILitd~kIs~ 134 (135)
+|++.++++... +.++++ .|..|+.+|++|||+.+.+ .|...++||+||++|.+|+.
T Consensus 176 ~av~~i~~~~~~-~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~~~~~~~~n~~Ili~~~~Le~ 237 (519)
T TIGR02341 176 DAVLRLKGSGNL-DAIQIIKKLGGSLNDSYLDEGFLLEKKIGVNQPKRIENAKILIANTPMDT 237 (519)
T ss_pred HHHHHhccCCCh-hheEEEEccCCCcccceEEeeEEEeccCCCCCceeeccccEEEEecCCCC
Confidence 999999876554 447787 5999999999999999887 77889999999999999874
No 25
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.67 E-value=4.1e-17 Score=143.22 Aligned_cols=126 Identities=17% Similarity=0.192 Sum_probs=110.1
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhccc-ccCC---HHHHHHH--Hhhcc---CCChhhhHHHHHHHHH
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQ-MIST---SEEIAQV--ATTSI---NGDKDIGALVARTIEL 72 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~-~v~~---~~~i~~V--Atisa---n~D~~iG~liaeA~~k 72 (135)
++++ ++.+++|++|..+++|+++|.+.+++.|++++. |+++ .+.+.++ +++++ ++++.+++++++|+.+
T Consensus 103 l~~~--~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~~~~ls~l~~~Ai~~ 180 (531)
T TIGR02346 103 LDKA--EELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNKKELIKALKASISSKQYGNEDFLAQLVAKACST 180 (531)
T ss_pred HHHH--HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhccccCchHHHHHHHHHHHHHH
Confidence 4667 899999999999999999999999999999996 8755 6789999 55766 4489999999999999
Q ss_pred hccCCc--eEEEe-------cCCCCCeEEEEeeeeEecCc---------------cccceeeecCC-CceEEeeceeEEE
Q 032735 73 VRKAEG--HIFIT-------EGKEPGVKLNLYSGFKLDWG---------------YSSSCFVTNKK-KKLCFQSSTYLFL 127 (135)
Q Consensus 73 VG~~dG--vItve-------e~~~~~~~le~~eG~~fd~G---------------YlSpyfvTd~~-~~~~~l~~p~ILi 127 (135)
+|+ +| .+.++ .|.+.. ++++++|+.||+| |.+|||+++++ ++.+++++|+.|.
T Consensus 181 v~~-~~~~~~~~~~I~i~ki~G~s~~-ds~li~Gi~~~~~~~~~~k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~ 258 (531)
T TIGR02346 181 VMP-KNPENFNVDNIRVSKIMGGSIS-NSEVLKGMVFNREAEGSVKRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELL 258 (531)
T ss_pred Hhh-cCCCcCChhHeeEEEecCCChh-hceeEeeeEEeccCCCCceeccCCCEEEEecCcCCCcccCceEEEECCHHHHH
Confidence 998 87 77777 565544 8999999999999 99999999998 9999999999987
Q ss_pred eccc
Q 032735 128 YGET 131 (135)
Q Consensus 128 td~k 131 (135)
.+.+
T Consensus 259 ~~~~ 262 (531)
T TIGR02346 259 NYSK 262 (531)
T ss_pred HHHH
Confidence 6554
No 26
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.62 E-value=2.5e-16 Score=137.90 Aligned_cols=124 Identities=19% Similarity=0.201 Sum_probs=107.4
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhcccccC----CHHHHHHHHhhccCCChhhhHHHHHHHHHhccCC
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMIS----TSEEIAQVATTSINGDKDIGALVARTIELVRKAE 77 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~----~~~~i~~VAtisan~D~~iG~liaeA~~kVG~~d 77 (135)
++++ ++.+++|++|..+++|+++|.+.+++.|+++|+|++ +.+.+.+||..|.+ +. +++.++++|.+++. +
T Consensus 108 l~~~--~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl~-sk-~~~~~~~~~s~i~v-~ 182 (526)
T cd03339 108 LEQA--EKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLG-SK-IVSRCHRQFAEIAV-D 182 (526)
T ss_pred HHHH--HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHhhc-cc-chhhHHHHHHHHHH-H
Confidence 4567 899999999999999999999999999999999996 57889999999997 64 99999999999999 9
Q ss_pred ceEEEecCCCCCe----------------EEEEeeeeEecCccccceeeecCCC-----ceEEeeceeEEEeccc
Q 032735 78 GHIFITEGKEPGV----------------KLNLYSGFKLDWGYSSSCFVTNKKK-----KLCFQSSTYLFLYGET 131 (135)
Q Consensus 78 GvItvee~~~~~~----------------~le~~eG~~fd~GYlSpyfvTd~~~-----~~~~l~~p~ILitd~k 131 (135)
|+++++++++..+ +.++++|+.|++||.||||.++.+. ..+.|++|++ .++.+
T Consensus 183 av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m~~~~~n~kI~ll~~~le~~~~-~~~~~ 256 (526)
T cd03339 183 AVLSVADLERKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAILTCPFEPPKP-KTKHK 256 (526)
T ss_pred HHHHHhhcCCCccchHHeEEEEecCcCHHHcceeeeEEEecccCCCCCCceecCCCEEEEEecccCCcc-ccceE
Confidence 9999987654443 3489999999999999999988777 7777777777 45554
No 27
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.60 E-value=2.3e-15 Score=131.78 Aligned_cols=122 Identities=16% Similarity=0.197 Sum_probs=103.6
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhh-cccccC--CHHHHHHHHhhccC-----C-ChhhhHHHHHHHHH
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSR-SAQMIS--TSEEIAQVATTSIN-----G-DKDIGALVARTIEL 72 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~-~a~~v~--~~~~i~~VAtisan-----~-D~~iG~liaeA~~k 72 (135)
++++ ++.+.+|++|..+++|+++|.+.+++.|++ +++|++ +.+.+.+||..|.+ + ++.+++++++|+.+
T Consensus 93 l~~~--~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~l~~~A~~~ 170 (527)
T cd03335 93 LKRA--NELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILA 170 (527)
T ss_pred HHHH--HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHH
Confidence 4566 899999999999999999999999999996 899997 78899999998865 3 48899999999999
Q ss_pred hc---cCCceEE---------EecCCCCCeEEEEeeeeEecCccccceeeecCCCceEEeeceeEEEecccccC
Q 032735 73 VR---KAEGHIF---------ITEGKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 134 (135)
Q Consensus 73 VG---~~dGvIt---------vee~~~~~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~ILitd~kIs~ 134 (135)
++ . +|.++ ...|.+.. +.++++|+.||+||.+| +|...++||+||++|.+|+.
T Consensus 171 v~~~~~-~~~~~~~~~~I~i~~~~Ggs~~-~s~li~Givi~~~~~~~-------~m~~~i~n~kIlll~~~Le~ 235 (527)
T cd03335 171 VKTTNE-KGKTKYPIKAVNILKAHGKSAK-ESYLVNGYALNCTRASQ-------GMPTRVKNAKIACLDFNLQK 235 (527)
T ss_pred hhcccc-cCCCccCHHHeEEEEecCcChh-hcceeeeEEEecccCCC-------CCcccccCCcEEEEeccCCC
Confidence 96 4 56533 33554444 89999999999999998 46668999999999999864
No 28
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.59 E-value=5.1e-15 Score=129.51 Aligned_cols=121 Identities=17% Similarity=0.147 Sum_probs=103.6
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhcccccC-----CHHHHHHHHh--hccC----CChhhhHHHHHHH
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMIS-----TSEEIAQVAT--TSIN----GDKDIGALVARTI 70 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~-----~~~~i~~VAt--isan----~D~~iG~liaeA~ 70 (135)
.+++ ++.+..|++|..|.+|+++|.+.+++.|+++++|++ +.+.+.+||. +|++ +++.+++++++|+
T Consensus 100 l~~a--~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~~~l~~l~~~A~ 177 (517)
T cd03336 100 LREA--EKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAVDAV 177 (517)
T ss_pred HHHH--HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccccchhHHHHHHHHHHHH
Confidence 4566 899999999999999999999999999999999994 3578999997 8887 7899999999999
Q ss_pred HHhccCCceEEEecCCCCCe-EEEEeeeeEecCccccceeeecCCCc---eEEeeceeEEEeccccc
Q 032735 71 ELVRKAEGHIFITEGKEPGV-KLNLYSGFKLDWGYSSSCFVTNKKKK---LCFQSSTYLFLYGETFR 133 (135)
Q Consensus 71 ~kVG~~dGvItvee~~~~~~-~le~~eG~~fd~GYlSpyfvTd~~~~---~~~l~~p~ILitd~kIs 133 (135)
.+++. . ....+ ++.-+.|.+|+.+|++|||+++.... ...++||+||++|.+|+
T Consensus 178 ~~v~~-~--------~~~~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~~~~~~~~n~kIli~~~~le 235 (517)
T cd03336 178 LRLKG-S--------GNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGVNQPKRIENAKILIANTPMD 235 (517)
T ss_pred HHhhc-c--------CCccceeEEEccCCCccceEEEeeEEEecccCCCCCCeeccccEEEEecCCC
Confidence 99964 1 22233 67777799999999999999987643 67899999999999876
No 29
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.57 E-value=3.8e-15 Score=130.86 Aligned_cols=123 Identities=18% Similarity=0.212 Sum_probs=105.7
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhcccccCC----HHHHHHHHhhccCCChhhhHHHHHHHHHhccCC
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMIST----SEEIAQVATTSINGDKDIGALVARTIELVRKAE 77 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~~----~~~i~~VAtisan~D~~iG~liaeA~~kVG~~d 77 (135)
.+++ ++.+.+|++|..|.+|+++|.+.+++.|+++++|++. .+.+.++|..|.+ ++ ++..++++|.+++. +
T Consensus 112 l~~a--~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l~-sK-~~~~~~~~ls~i~~-~ 186 (532)
T TIGR02343 112 LEQA--EALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQAAKTSLG-SK-IVSKCHRRFAEIAV-D 186 (532)
T ss_pred HHHH--HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhhc-cc-hhhHHHHHHHHHHH-H
Confidence 4566 8999999999999999999999999999999999853 6889999999886 64 99999999999999 9
Q ss_pred ceEEEecCC-----------------CCCeEEEEeeeeEecCccccceeeecCCC-----ceEEeeceeEEEeccc
Q 032735 78 GHIFITEGK-----------------EPGVKLNLYSGFKLDWGYSSSCFVTNKKK-----KLCFQSSTYLFLYGET 131 (135)
Q Consensus 78 GvItvee~~-----------------~~~~~le~~eG~~fd~GYlSpyfvTd~~~-----~~~~l~~p~ILitd~k 131 (135)
+++++++++ +..+ .++++|+.||+||.+|||.++.++ ..+.|+.|++ -++.+
T Consensus 187 av~~i~~~~~~~~d~~~I~i~ki~Ggs~~d-s~~v~Gi~i~~~~~~~~m~~~~~n~kI~l~~~~le~~~~-~~~~~ 260 (532)
T TIGR02343 187 AVLMVADMERRDVDFDLIKVEGKVGGSLED-TKLIKGIIIDKDFSHPQMPKEVKDAKIAILTCPFEPPKP-KTKHK 260 (532)
T ss_pred HHHhhhhcCCCcCCHHHeeEEEecCCCccc-ceeEeeEEEecCcCCCCCCeeecCCcEEEEEeecccccc-cccee
Confidence 999997643 3334 499999999999999999988877 7777877777 35555
No 30
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.51 E-value=3e-14 Score=124.67 Aligned_cols=123 Identities=15% Similarity=0.099 Sum_probs=102.7
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhcccccC--CHHHHHHHHhhccCCChhh-------hHHHHHHHHH
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMIS--TSEEIAQVATTSINGDKDI-------GALVARTIEL 72 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~--~~~~i~~VAtisan~D~~i-------G~liaeA~~k 72 (135)
.+++ ++.+.+|++|..+++|+++|.+.+++.|+++++|++ +.+.+.+||.+|.+ ++.+ ++++.+|+.+
T Consensus 94 l~~a--~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~va~tsl~-sK~~~~~~~~ls~l~~~a~~~ 170 (517)
T TIGR02342 94 LGAC--ETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSDREILIKSATTSLS-SKVVSQYSSLLAPLAVDAVLK 170 (517)
T ss_pred HHHH--HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHH
Confidence 4566 899999999999999999999999999999999997 78899999999886 7766 8999999999
Q ss_pred hccCC---ceEE------EecCCCCCeEEEEeeeeEecCcccc----ceeeecCC---------CceEEeeceeEEEe
Q 032735 73 VRKAE---GHIF------ITEGKEPGVKLNLYSGFKLDWGYSS----SCFVTNKK---------KKLCFQSSTYLFLY 128 (135)
Q Consensus 73 VG~~d---GvIt------vee~~~~~~~le~~eG~~fd~GYlS----pyfvTd~~---------~~~~~l~~p~ILit 128 (135)
++. + |.+. ++-..+..++.++++|+.||+||.+ |++++|+. ..+.++.+++++.+
T Consensus 171 v~~-~~~~~~~~~~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~~~~~~~~~ 247 (517)
T TIGR02342 171 VID-PENDKNVDLNDIKVVKKLGGTIDDTELIEGLVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTDMENQVIVND 247 (517)
T ss_pred Hhc-cccCCccCHHHeeEEeccCCChhhcEEEeeEEEeccccccCCCCccccCCcEEEEecCCCCCcccccceEEeCC
Confidence 986 3 5554 4444456678999999999999999 88887765 55566777777644
No 31
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.49 E-value=6.9e-14 Score=121.44 Aligned_cols=121 Identities=14% Similarity=0.133 Sum_probs=102.3
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhcccccC--CHHHHHHHHhhccC------CChhhhHHHHHHHHHh
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMIS--TSEEIAQVATTSIN------GDKDIGALVARTIELV 73 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~--~~~~i~~VAtisan------~D~~iG~liaeA~~kV 73 (135)
.+++ .+.+..|.+|..+.+|+++|.+.+++.|+++++|++ +.+.+.+||..+.+ .++.+++++.+|+..+
T Consensus 101 l~~a--~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~ls~lv~~Ai~~v 178 (480)
T cd03337 101 LAVA--EPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTV 178 (480)
T ss_pred HHHH--HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHhh
Confidence 3556 788999999999999999999999999999999997 78889999987775 3567999999999999
Q ss_pred ccCC--ce---------EEEec--CCCCCeEEEEeeeeEecCccccceeeecCCCceEEeeceeEEEeccccc
Q 032735 74 RKAE--GH---------IFITE--GKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFR 133 (135)
Q Consensus 74 G~~d--Gv---------Itvee--~~~~~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~ILitd~kIs 133 (135)
++ + |. |.|+. |... .+.++++|+.|++|+.+| +|...++||+||++|.+++
T Consensus 179 ~~-~~~~~~~~id~~~~I~i~ki~Ggs~-~ds~li~Gvvi~k~~~~~-------~m~~~~~n~kIlll~~~Le 242 (480)
T cd03337 179 AV-EENGRKKEIDIKRYAKVEKIPGGEI-EDSRVLDGVMLNKDVTHP-------KMRRRIENPRIVLLDCPLE 242 (480)
T ss_pred cc-ccCCCCCcCChhhceEEEEecCCCH-HhcccccceEEeccCCCC-------CCCcEecCCCEEEEecCcc
Confidence 97 5 53 55555 5443 448899999999998775 6777899999999998875
No 32
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.48 E-value=9.9e-14 Score=121.41 Aligned_cols=122 Identities=10% Similarity=0.098 Sum_probs=102.6
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhcccccC--CHHHHHHHH--hhccCC----ChhhhHHHHHHHHHh
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMIS--TSEEIAQVA--TTSING----DKDIGALVARTIELV 73 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~--~~~~i~~VA--tisan~----D~~iG~liaeA~~kV 73 (135)
.+++ .+.+..|++|..+.+|+++|.+.+++.|+++++|++ +.+.+.++| +++++. ++.+++++.+|+..+
T Consensus 101 l~~a--~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v 178 (525)
T TIGR02344 101 LSVA--EPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTV 178 (525)
T ss_pred HHHH--HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHh
Confidence 4566 789999999999999999999999999999999996 667899999 566754 678999999999999
Q ss_pred ccCCc-----------eEEEec--CCCCCeEEEEeeeeEecCccccceeeecCCCceEEeeceeEEEecccccC
Q 032735 74 RKAEG-----------HIFITE--GKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 134 (135)
Q Consensus 74 G~~dG-----------vItvee--~~~~~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~ILitd~kIs~ 134 (135)
++ ++ .|.|+. |....+ .++++|+.||++.. ++ +|...++||+||++|.+|+.
T Consensus 179 ~~-~~~~~~~~~d~~~~I~i~ki~Gg~~~d-S~lv~Gvvi~k~~~------~~-~m~~~~~n~kIlll~~~Le~ 243 (525)
T TIGR02344 179 KR-DLGNGRKEIDIKRYAKVEKIPGGDIED-SCVLKGVMINKDVT------HP-KMRRYIENPRIVLLDCPLEY 243 (525)
T ss_pred hc-cccCCCCccChhhceEEEEecCCChHh-cCcccceEEecccC------CC-CCccccCCCCEEEEeccccc
Confidence 98 75 256664 655555 88999999999843 33 67788999999999998864
No 33
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.44 E-value=2.8e-13 Score=117.48 Aligned_cols=119 Identities=18% Similarity=0.187 Sum_probs=95.4
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhcccc-cCC---HHHHHHHHh-----hccCCChhhhHHHHHHHHH
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQM-IST---SEEIAQVAT-----TSINGDKDIGALVARTIEL 72 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~-v~~---~~~i~~VAt-----isan~D~~iG~liaeA~~k 72 (135)
.+++ .+.+.+|++|..+++|+++|.+.+++.|++++.+ +++ .+.+.+++. .++++++.+++++++|+.+
T Consensus 93 l~~~--~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l~~l~~~a~~~ 170 (472)
T cd03341 93 LEKA--EELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFLSPLVAEACIS 170 (472)
T ss_pred HHHH--HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 4566 7889999999999999999999999999999976 644 445656543 2334688999999999999
Q ss_pred hccCC--ceEEEe-------cCCCCCeEEEEeeeeEecCccccceeeecCCCceEEeeceeEEEeccccc
Q 032735 73 VRKAE--GHIFIT-------EGKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFR 133 (135)
Q Consensus 73 VG~~d--GvItve-------e~~~~~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~ILitd~kIs 133 (135)
+|+ + |.+.++ .|....+ .++++|+.|++. ++.+...++||+|+++|.+++
T Consensus 171 ~~~-~~~~~~~~~~i~i~ki~Gg~~~d-s~lv~Giv~~~~---------~~~~~~~~~n~~Ili~~~~Le 229 (472)
T cd03341 171 VLP-ENIGNFNVDNIRVVKILGGSLED-SKVVRGMVFKRE---------PEGSVKRVKKAKVAVFSCPFD 229 (472)
T ss_pred Hhh-ccCCcCChhHeEEEEecCCCccc-ceEEeeEEEccc---------cCCCceeccCCcEEEEecccc
Confidence 998 7 888776 4555555 599999999964 233447899999999999875
No 34
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=99.42 E-value=1.2e-12 Score=111.59 Aligned_cols=120 Identities=24% Similarity=0.297 Sum_probs=105.6
Q ss_pred ccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhcccccCCH-HHHHHHHhhccCCC------hhhhHHHHHHH-----
Q 032735 3 NEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMISTS-EEIAQVATTSINGD------KDIGALVARTI----- 70 (135)
Q Consensus 3 ~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~~~-~~i~~VAtisan~D------~~iG~liaeA~----- 70 (135)
+++ ++.+.+|.+|..+.+|++.|.+.+++.|.++|.|+++. +.+.++|..+.+++ ..+++++.+|+
T Consensus 75 ~~~--~~li~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~ 152 (485)
T PF00118_consen 75 RNA--LKLIKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKS 152 (485)
T ss_dssp HHH--HHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTT
T ss_pred hhh--hhhhhccccccchhhhhhhhhhhhhhhhhhhhccccccchhhhhhhcccccccccccchhhhhhhHHHHHHhhcc
Confidence 456 78889999999999999999999999999999999988 99999999999877 79999999999
Q ss_pred -HHhccCCceEEEecCCCCCeEEEEeeeeEecCccccceeeecCCCceEEeeceeEEEecccccC
Q 032735 71 -ELVRKAEGHIFITEGKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 134 (135)
Q Consensus 71 -~kVG~~dGvItvee~~~~~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~ILitd~kIs~ 134 (135)
..++. .+++.+..++. .+.++++|+.|+++|.+| .|...++||.|+++|..|+.
T Consensus 153 ~~~~~~-i~i~~i~g~~~--~dS~li~Giv~~~~~~~~-------~~~~~~~~~~Ill~~~~L~~ 207 (485)
T PF00118_consen 153 NFDLDN-IKIIKIPGGSI--SDSELINGIVLDKGFSSP-------NMPKKIENPKILLLNCPLEY 207 (485)
T ss_dssp THHGGG-EEEEEEESSSS--GGEEEESEEEESSSBSST-------TSBSEEESEEEEEESSEBSS
T ss_pred cccccc-hhhhhhccccc--cccccccceeeecccccc-------ccccccccceEEeeeccccc
Confidence 77888 99999998876 445667999999999999 45556699999999998864
No 35
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=98.82 E-value=7.2e-09 Score=80.37 Aligned_cols=81 Identities=27% Similarity=0.258 Sum_probs=66.5
Q ss_pred HHHHHHHhhccC-----CChhhhHHHHHHHHHhccC-----CceEEEecCCCCC-eEEEEeeeeEecCccccceeeecCC
Q 032735 46 EEIAQVATTSIN-----GDKDIGALVARTIELVRKA-----EGHIFITEGKEPG-VKLNLYSGFKLDWGYSSSCFVTNKK 114 (135)
Q Consensus 46 ~~i~~VAtisan-----~D~~iG~liaeA~~kVG~~-----dGvItvee~~~~~-~~le~~eG~~fd~GYlSpyfvTd~~ 114 (135)
+.+.+||..|.+ .++.+++++.+|+.++++. .+.|.|+...+.. .+.++++|+.|++||.+|+|
T Consensus 2 ~~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m----- 76 (209)
T cd03333 2 ELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYM----- 76 (209)
T ss_pred hHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChhhceeEeeEEEeccccCCCC-----
Confidence 467888887777 6889999999999999871 2688888776622 35566889999999999998
Q ss_pred CceEEeeceeEEEeccccc
Q 032735 115 KKLCFQSSTYLFLYGETFR 133 (135)
Q Consensus 115 ~~~~~l~~p~ILitd~kIs 133 (135)
...++||+||++|.+|+
T Consensus 77 --~~~~~n~~Ill~~~~le 93 (209)
T cd03333 77 --PKRLENAKILLLDCPLE 93 (209)
T ss_pred --CeEcCCCcEEEEeCCee
Confidence 46889999999998875
No 36
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0023 Score=56.33 Aligned_cols=111 Identities=17% Similarity=0.262 Sum_probs=83.5
Q ss_pred hhhccCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhccCC--ChhhhHHHHHHHHHhccCCceEEEe-cC
Q 032735 9 LLENAELDDTEIRKGVQMAVDSVLENLSRSAQMISTSEEIAQVATTSING--DKDIGALVARTIELVRKAEGHIFIT-EG 85 (135)
Q Consensus 9 ~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~~~~~i~~VAtisan~--D~~iG~liaeA~~kVG~~dGvItve-e~ 85 (135)
+.++.|++|-.+..|.+.|....++.|.+.++|+ +.+-+.+||..|-+. +++....+.+++- +-|.+|. .+
T Consensus 107 ~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~-~~~~L~~va~tsl~Tkv~~~la~~lt~~vv-----~aVl~i~~~~ 180 (520)
T KOG0359|consen 107 RYISEGLHPRIITEGFEAAKNKALEFLEKVSREV-DRETLKDVARTSLRTKVHAELADVLTPIVV-----DSVLCIRRQE 180 (520)
T ss_pred HHhhcCCCcchhhhHHHHHHHHHHhhhhccccch-hHHHHHHHHHHhhcCcccHHHHhHhHHHHH-----hhheeeccCC
Confidence 5788999999999999999999999999999998 478888898765543 6666666666653 5666665 11
Q ss_pred CC--------------CCeEEEEeeeeEecCccccceeeecCCCceEEeeceeEEEecccc
Q 032735 86 KE--------------PGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETF 132 (135)
Q Consensus 86 ~~--------------~~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~ILitd~kI 132 (135)
.. ..++-.+++|+.+|+|-..|-| .-.++|+|||+|+-.+
T Consensus 181 ~~idl~mveim~mq~~s~~dT~~v~glvLdhg~rHpdm-------p~~~e~a~iL~~NvSL 234 (520)
T KOG0359|consen 181 EPIDLFMVEIMEMQHKSLHDTSLVQGLVLDHGARHPDM-------PRRVEDAYILICNVSL 234 (520)
T ss_pred CCcchhHHHhhhhccCchhhhHHhhhhhccCCCCCccc-------ccchhceEEEEeeccc
Confidence 11 1223457899999999877744 4468999999998543
No 37
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.072 Score=46.84 Aligned_cols=120 Identities=14% Similarity=0.103 Sum_probs=83.5
Q ss_pred hhhccCCChHHHHHHHHHHHHHHHHHHhhcccccC--CH----HHHHHHHh--hccC----CChhhhHHHHHHHHHhccC
Q 032735 9 LLENAELDDTEIRKGVQMAVDSVLENLSRSAQMIS--TS----EEIAQVAT--TSIN----GDKDIGALVARTIELVRKA 76 (135)
Q Consensus 9 ~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~--~~----~~i~~VAt--isan----~D~~iG~liaeA~~kVG~~ 76 (135)
.++.-|.+|.-|.|++++|...+++.|++++..++ ++ +-++.-|. +|+. +-.--.+|+-+|+..++.-
T Consensus 110 pfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld~~ 189 (543)
T KOG0361|consen 110 PFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAATALSSKLIRQEKEFFAKMVVDAVLTLDND 189 (543)
T ss_pred hHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhccc
Confidence 46788999999999999999999999999999997 22 33344443 3332 1334678999999888730
Q ss_pred --CceEEEe--cCCCCCeEEEEeeeeEecCccccceeeecCCCceEEeeceeEEEeccccc
Q 032735 77 --EGHIFIT--EGKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFR 133 (135)
Q Consensus 77 --dGvItve--e~~~~~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~ILitd~kIs 133 (135)
.-.|-|. .|-.+++ ..++.|.-|.+-|.-.=| |.+---|.||.||+.+-.+.
T Consensus 190 l~~~mIGIKKV~GG~~~d-S~lv~GVAFkKtFsYAGf----EqqPKk~~NpkIl~LnvELE 245 (543)
T KOG0361|consen 190 LDLNMIGIKKVPGGAMED-SLLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNVELE 245 (543)
T ss_pred cchhhcceeecCCCccch-hhhccceeeeehccccch----hhCccccCCceEEEEeeeee
Confidence 1223333 3334454 448999999988765556 44444689999999875543
No 38
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=0.15 Score=45.36 Aligned_cols=118 Identities=15% Similarity=0.122 Sum_probs=79.8
Q ss_pred hhhccCCChHHHHHHHHHHHHHHHHHHhhcccccC--CHHHHHHHHhhccC------CChhhhHHHHHHHHHhccCCce-
Q 032735 9 LLENAELDDTEIRKGVQMAVDSVLENLSRSAQMIS--TSEEIAQVATTSIN------GDKDIGALVARTIELVRKAEGH- 79 (135)
Q Consensus 9 ~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~--~~~~i~~VAtisan------~D~~iG~liaeA~~kVG~~dGv- 79 (135)
..+..|.+|+-+.+..-+|.+..+..|.+++.|++ +..++.+|-..|-. -...++++--+|+.+||..+|-
T Consensus 109 ~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e 188 (527)
T KOG0364|consen 109 PFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKDQAKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVENGRE 188 (527)
T ss_pred hhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhccCce
Confidence 35678999999999999999999999999999986 44566655433321 1334677778999999982243
Q ss_pred EEEe------cCCCC-CeEEEEeeeeEecCccccceeeecCCCceEEeeceeEEEeccccc
Q 032735 80 IFIT------EGKEP-GVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFR 133 (135)
Q Consensus 80 Itve------e~~~~-~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~ILitd~kIs 133 (135)
|.+. -=.+. --+.+++.|.-+.+- |++| +|+=..+||.|++.|.++.
T Consensus 189 ~dik~y~kveKvpgg~l~~s~vl~Gv~~nkd------v~Hp-kmrr~IenprivLlD~~Le 242 (527)
T KOG0364|consen 189 IDIKRYAKVEKVPGGLLEDSCVLKGVMINKD------VTHP-KMRRAIENPRIVLLDCPLE 242 (527)
T ss_pred echhhhccccccCcccccccceecceeeccc------cCcH-HHHHHhhcCcEEEecCCcc
Confidence 2111 10110 012345666666654 4554 7777899999999998764
No 39
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=92.12 E-value=1.5 Score=39.55 Aligned_cols=94 Identities=17% Similarity=0.088 Sum_probs=67.4
Q ss_pred hhhhccCCChHHHHHHHHHHHHHHHHHHhhcc----cccCCHHHHHHHHhhcc--CCChhhhHHHHHHHHHhccCCceEE
Q 032735 8 LLLENAELDDTEIRKGVQMAVDSVLENLSRSA----QMISTSEEIAQVATTSI--NGDKDIGALVARTIELVRKAEGHIF 81 (135)
Q Consensus 8 l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a----~~v~~~~~i~~VAtisa--n~D~~iG~liaeA~~kVG~~dGvIt 81 (135)
-..+.-|+.|.+++.|.+.|...+++.|.++. .+..++++..+.+.-|- .++..+-+++++|--.+.+ .|...
T Consensus 115 e~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~~~~rs~i~skq~~~ed~l~~lVa~ac~si~p-~~~Fn 193 (537)
T KOG0362|consen 115 EELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKEWALRSVIMSKQYGNEDFLTKLVAKACVSILP-LMSFN 193 (537)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcc-ccccc
Confidence 35677899999999999999999998887654 44556665555543332 2356689999999999999 64433
Q ss_pred Ee-------cCCCCCeEEEEeeeeEecCc
Q 032735 82 IT-------EGKEPGVKLNLYSGFKLDWG 103 (135)
Q Consensus 82 ve-------e~~~~~~~le~~eG~~fd~G 103 (135)
++ -|.+.++ ..+++||.|.+.
T Consensus 194 vdnIrVcKi~Gg~l~~-S~Vv~GmVfkr~ 221 (537)
T KOG0362|consen 194 VDNIRVCKILGGGLED-SCVVCGMVFKRD 221 (537)
T ss_pred ccceEEEEEecCCccc-ceeeEEEEeccc
Confidence 33 2334333 679999999875
No 40
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=88.08 E-value=0.64 Score=38.20 Aligned_cols=40 Identities=23% Similarity=0.388 Sum_probs=33.6
Q ss_pred ccCCHHHHHHHHhhccCCChhhhHHHHHHHHHhccCCceEEE
Q 032735 41 MISTSEEIAQVATTSINGDKDIGALVARTIELVRKAEGHIFI 82 (135)
Q Consensus 41 ~v~~~~~i~~VAtisan~D~~iG~liaeA~~kVG~~dGvItv 82 (135)
-|+..++-.+.|.|||-||.+-.+||++++.+.|. |.|.+
T Consensus 199 vVeKAeQqk~aavIsAEGds~aA~li~~sla~aG~--gLiel 238 (271)
T KOG3083|consen 199 VVEKAEQQKKAAVISAEGDSKAAELIANSLATAGD--GLIEL 238 (271)
T ss_pred HHHHHhhhhhhheeecccchHHHHHHHHHHhhcCC--ceeee
Confidence 34445666777889999999999999999999986 99876
No 41
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=82.98 E-value=2.2 Score=37.72 Aligned_cols=50 Identities=24% Similarity=0.243 Sum_probs=44.4
Q ss_pred hhhhccCCChHHHHHHHHHHHHHHHHHHhhcccccC--CHHHHHHHHhhccC
Q 032735 8 LLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMIS--TSEEIAQVATTSIN 57 (135)
Q Consensus 8 l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~--~~~~i~~VAtisan 57 (135)
-+.+..|.+|.-+....++|....++.|.+||.|++ +.+.+-+-|+.|-|
T Consensus 115 ~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsdre~Li~~atTsLn 166 (534)
T KOG0358|consen 115 EKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSDRESLIKSATTSLN 166 (534)
T ss_pred HHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCcHHHHHHHHHhHhh
Confidence 367889999999999999999999999999999994 67778888888775
No 42
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=81.02 E-value=3.4 Score=36.44 Aligned_cols=115 Identities=20% Similarity=0.260 Sum_probs=69.0
Q ss_pred hhhhccCCChHHHHHHHHHHHHHHHHHHhhcccccCC-----HHHHHHHHh--hccC---CCh-hhhHHHHHHHHHhccC
Q 032735 8 LLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMIST-----SEEIAQVAT--TSIN---GDK-DIGALVARTIELVRKA 76 (135)
Q Consensus 8 l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~~-----~~~i~~VAt--isan---~D~-~iG~liaeA~~kVG~~ 76 (135)
=+.+++-.+|+-+.+|...|.+.+.+.|.+.|..-++ .+++.++|. .|+. .|. .-.+|--+|+.++-.
T Consensus 109 eklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~kehFaelavdAV~rLkG- 187 (527)
T KOG0363|consen 109 EKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKEHFAELAVDAVLRLKG- 187 (527)
T ss_pred HHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-
Confidence 4778889999999999999999999999987766331 468888884 3331 133 356677777777633
Q ss_pred CceEEEecCCCCCeEEEEee--eeEecCccccceeeecCCCc---eEEeeceeEEEecccc
Q 032735 77 EGHIFITEGKEPGVKLNLYS--GFKLDWGYSSSCFVTNKKKK---LCFQSSTYLFLYGETF 132 (135)
Q Consensus 77 dGvItvee~~~~~~~le~~e--G~~fd~GYlSpyfvTd~~~~---~~~l~~p~ILitd~kI 132 (135)
.|-. ..++++. |=+++..|+--=|+-++.-. --..+||.|||.+-..
T Consensus 188 s~nL---------~~IqIIK~~Gg~l~dSfLDeGFlL~K~igv~qpkriena~iLIANT~m 239 (527)
T KOG0363|consen 188 STNL---------EAIQIIKKLGGKLEDSFLDEGFLLDKKIGVNQPKRIENAKILIANTPM 239 (527)
T ss_pred CCCc---------cceeeehhcCCccccccccccceeccccCCCCcccccccceEEecCCC
Confidence 2211 1111111 22233333333344333211 1136899999976543
No 43
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=80.73 E-value=2.2 Score=34.59 Aligned_cols=66 Identities=12% Similarity=0.136 Sum_probs=44.2
Q ss_pred hhhhHHHHHHHHHhccCC----------ceEEEe--cCCCCCeEEEEeeeeEecCccccceeeecCCCceEEeeceeEEE
Q 032735 60 KDIGALVARTIELVRKAE----------GHIFIT--EGKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFL 127 (135)
Q Consensus 60 ~~iG~liaeA~~kVG~~d----------GvItve--e~~~~~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~ILi 127 (135)
+.+.+++.+|+..+-. + -.|.|. .|.+. .+.++++|+-|+++..++ +|.-.++||.|++
T Consensus 21 ~~ls~l~v~Av~~v~~-~~~~~~~~di~~~I~I~ki~Ggs~-~dS~li~Gvvi~k~~~~~-------~m~~~i~n~kIll 91 (261)
T cd03334 21 DILLPLVWKAASNVKP-DVRAGDDMDIRQYVKIKKIPGGSP-SDSEVVDGVVFTKNVAHK-------RMPSKIKNPRILL 91 (261)
T ss_pred HHHHHHHHHHHHHhhc-ccccCCccChhHceEEEEecCCCH-HHcEEEeeEEEeCCCCCc-------cCCcccCCCcEEE
Confidence 3456666777766642 1 125554 34333 457899999999987665 3455688999999
Q ss_pred ecccccC
Q 032735 128 YGETFRL 134 (135)
Q Consensus 128 td~kIs~ 134 (135)
.|..++.
T Consensus 92 l~~~Le~ 98 (261)
T cd03334 92 LQGPLEY 98 (261)
T ss_pred Eeeeecc
Confidence 9987754
No 44
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=77.30 E-value=5.9 Score=25.94 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=31.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhcc
Q 032735 15 LDDTEIRKGVQMAVDSVLENLSRSAQMISTSEEIAQVATTSI 56 (135)
Q Consensus 15 ~nP~~l~rGi~~A~~~v~~~L~~~a~~v~~~~~i~~VAtisa 56 (135)
++|.+||+.|+.|-...-.-++=-..||.+.++..+.+..-+
T Consensus 4 asPv~LR~~lE~A~~La~~GIRFVpiPv~~dee~~~L~s~~~ 45 (61)
T PF07131_consen 4 ASPVDLRKALEMAHSLAHIGIRFVPIPVVTDEEFHTLSSQLS 45 (61)
T ss_pred ccHHHHHHHHHHHHHHHHcCceeeccccccHHHHHHHHHHHH
Confidence 689999999999953333335556788889888888776554
No 45
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=64.43 E-value=8.8 Score=33.38 Aligned_cols=49 Identities=20% Similarity=0.202 Sum_probs=42.1
Q ss_pred hhhhccCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhcc
Q 032735 8 LLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMISTSEEIAQVATTSI 56 (135)
Q Consensus 8 l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~~~~~i~~VAtisa 56 (135)
.+++..|.+|+.+..|.++|....++.|.+.+.|++-.+.|.||--.-|
T Consensus 108 ~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~ef~emi~~vK~~ga 156 (400)
T KOG0357|consen 108 HELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFEFEEMIQQIKETGA 156 (400)
T ss_pred HhhcccccchhHHHHhhhhHHHhhhhhhhhhcccccHHHHHHHHHhhCC
Confidence 4677889999999999999999999999999999987778888754333
No 46
>PF06577 DUF1134: Protein of unknown function (DUF1134); InterPro: IPR008325 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=53.53 E-value=62 Score=25.06 Aligned_cols=60 Identities=10% Similarity=0.204 Sum_probs=46.6
Q ss_pred CChhhhHHHHHHHHHhccCCceEEEecCCCCCeEEEEeeeeEecCccccceeeecCCCceEEeeceeE
Q 032735 58 GDKDIGALVARTIELVRKAEGHIFITEGKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYL 125 (135)
Q Consensus 58 ~D~~iG~liaeA~~kVG~~dGvItvee~~~~~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~I 125 (135)
..+.++.+|.+|+++-|..+|.|.=||+.+ .++-|+++-.|-|.. -+...+++-|.-|-|
T Consensus 19 ~s~gla~~ie~af~~~G~PngYI~G~E~sG-----A~~~GlrYGeG~L~~---k~~g~~~vyWqGPSi 78 (160)
T PF06577_consen 19 TSEGLAKVIEKAFKDYGRPNGYILGEEASG-----AFVVGLRYGEGTLYT---KNAGQHKVYWQGPSI 78 (160)
T ss_pred hhHHHHHHHHHHHHHcCCCceEEEeeeccc-----cEEEEEEecccEEEE---cCCCeeEEEEeCCce
Confidence 356799999999999999999999998865 477899999987643 244456677766644
No 47
>PRK06743 flagellar motor protein MotP; Reviewed
Probab=48.97 E-value=35 Score=27.99 Aligned_cols=38 Identities=18% Similarity=0.338 Sum_probs=30.5
Q ss_pred cccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhcccc
Q 032735 2 CNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQM 41 (135)
Q Consensus 2 ~~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~ 41 (135)
++.| ++.+..|.+|-+++.-++...+...+.+++.++-
T Consensus 105 l~~g--l~l~vdg~~~e~i~~~le~~~~~~~~~~~~~~~~ 142 (254)
T PRK06743 105 IQKG--IRLMLSGYDEDELKEVLMKDVETEVYELRKGAAL 142 (254)
T ss_pred HHHH--HHHHHCCCCHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3556 7888889999999999999998888777765444
No 48
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=40.24 E-value=56 Score=24.96 Aligned_cols=52 Identities=13% Similarity=0.329 Sum_probs=33.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHH-----hhccCC-----ChhhhHHHHHHHHHhcc
Q 032735 14 ELDDTEIRKGVQMAVDSVLENLSRSAQMISTSEEIAQVA-----TTSING-----DKDIGALVARTIELVRK 75 (135)
Q Consensus 14 G~nP~~l~rGi~~A~~~v~~~L~~~a~~v~~~~~i~~VA-----tisan~-----D~~iG~liaeA~~kVG~ 75 (135)
.+|...|.+||.+|.+. +||+ .++|.+++ .+...+ ...||+++-+.+.++-.
T Consensus 60 ~Fdr~Kl~~gl~~Ac~K---------RpVs-~e~ie~~v~~Ie~~l~~~~~~EI~S~~IGe~Vm~~L~~lD~ 121 (147)
T TIGR00244 60 PFNREKLLRGMVRACEK---------RPVS-FDDLEHAINHIEAQLRAQGEREVPSELIGQMVMQYLKKLDE 121 (147)
T ss_pred CCCHHHHHHHHHHHhcC---------CCCC-HHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhhcCc
Confidence 46888999999998532 6774 56665554 122222 24688888888876643
No 49
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=36.57 E-value=35 Score=21.68 Aligned_cols=18 Identities=11% Similarity=0.268 Sum_probs=12.3
Q ss_pred HHHHHHHhccCCceEEEec
Q 032735 66 VARTIELVRKAEGHIFITE 84 (135)
Q Consensus 66 iaeA~~kVG~~dGvItvee 84 (135)
|-.++..+|= +|.++||-
T Consensus 5 i~~~L~~~GY-dG~~siE~ 22 (55)
T PF07582_consen 5 IFSALREIGY-DGWLSIEH 22 (55)
T ss_dssp HHHHHHHTT---SEEEE--
T ss_pred HHHHHHHcCC-CceEEEEe
Confidence 5678899999 99999994
No 50
>PF02429 PCP: Peridinin-chlorophyll A binding protein; InterPro: IPR003376 Peridinin-chlorophyll-protein, a water-soluble light-harvesting complex that has a blue-green absorbing carotenoid as its main pigment, is present in most photosynthetic dinoflagellates. These proteins are composed of two similar repeated domains. These domains constitute a scaffold with pseudo-twofold symmetry surrounding a hydrophobic cavity filled by two lipid, eight peridinin, and two chlorophyll a molecules [].; GO: 0018298 protein-chromophore linkage, 0030076 light-harvesting complex; PDB: 1PPR_M 2X21_M 2X1Z_M 3IIU_M 3IIS_M 2X20_M 2C9E_A.
Probab=31.93 E-value=86 Score=23.88 Aligned_cols=46 Identities=13% Similarity=0.336 Sum_probs=28.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhccCCChhhhHHHHHHH
Q 032735 15 LDDTEIRKGVQMAVDSVLENLSRSAQMISTSEEIAQVATTSINGDKDIGALVARTI 70 (135)
Q Consensus 15 ~nP~~l~rGi~~A~~~v~~~L~~~a~~v~~~~~i~~VAtisan~D~~iG~liaeA~ 70 (135)
+||-.||.+.+.=.+++ ..+. ++-|.+..+-..| +..+|++||.+-
T Consensus 54 md~~~lkaa~~AH~kAI-gsi~--~~gvts~aD~~aV-------NaAlgr~iAsvp 99 (145)
T PF02429_consen 54 MDPNLLKAAAEAHHKAI-GSID--AKGVTSRADYAAV-------NAALGRMIASVP 99 (145)
T ss_dssp S-HHHHHHHHHHHHHHH-HCTT--TTCB--HHHHHHH-------HHHHHHHHHTS-
T ss_pred cCHHHHHHHHHHHHHHh-cccC--ccccccHHHHHHH-------HHHHHHHHHhCC
Confidence 57777777766665554 4555 7777777777666 356888887543
No 51
>COG4816 EutL Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=31.26 E-value=49 Score=26.52 Aligned_cols=22 Identities=18% Similarity=0.444 Sum_probs=17.9
Q ss_pred hhccCCChHHHHHHHHHHHHHH
Q 032735 10 LENAELDDTEIRKGVQMAVDSV 31 (135)
Q Consensus 10 ~v~aG~nP~~l~rGi~~A~~~v 31 (135)
-+-.|-||-++|+|++.|++.+
T Consensus 86 iilgGp~paeVk~gl~vav~~i 107 (219)
T COG4816 86 IILGGPNPAEVKRGLEVAVAEI 107 (219)
T ss_pred EEEcCCCHHHHHHHHHHHHHHH
Confidence 4567899999999999986553
No 52
>PF00923 Transaldolase: Transaldolase; InterPro: IPR001585 Transaldolase (2.2.1.2 from EC) catalyses the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 kDa whose sequence has been well conserved throughout evolution. A lysine has been implicated [] in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate.; GO: 0005975 carbohydrate metabolic process; PDB: 3R5E_A 1F05_A 1I2P_A 1UCW_A 1ONR_A 1I2O_B 3KOF_A 3CWN_B 1I2N_A 1I2Q_A ....
Probab=28.71 E-value=1.8e+02 Score=23.77 Aligned_cols=59 Identities=17% Similarity=0.248 Sum_probs=36.9
Q ss_pred CChHHHHHHHH--HHHHHHHHHHhhcccccCCHHHHHHHHhhccCCChhhhHHHHHHHHHhccCCceEEEecCC
Q 032735 15 LDDTEIRKGVQ--MAVDSVLENLSRSAQMISTSEEIAQVATTSINGDKDIGALVARTIELVRKAEGHIFITEGK 86 (135)
Q Consensus 15 ~nP~~l~rGi~--~A~~~v~~~L~~~a~~v~~~~~i~~VAtisan~D~~iG~liaeA~~kVG~~dGvItvee~~ 86 (135)
.||.-+.+.+. ...+..++.+.+.- ....++. |.-.-++..++.+.+|. +|.|++|-..
T Consensus 25 TNPsii~~a~~~~~~~~~~i~~l~~~~------~~~~~~~------~~l~~~~~~~~~~~lg~-~G~vsvqv~p 85 (287)
T PF00923_consen 25 TNPSIIAKALSGSEAYDEAIKELAKQG------KSWEEIY------DKLAVEDGREALDLLGK-DGPVSVQVDP 85 (287)
T ss_dssp E-HHHHHHHHTGHHHHHHHHHHHHHHS------HHHHHHH------HHHHHHHHHHHHCCHTS-SSEEEEE-SG
T ss_pred cCHHHHHHHHcccccHHHHHHHHHHhc------ccHHHHH------HHHHHHHHHHHHHhcCC-CceEEEecCC
Confidence 49999999765 24445555555433 2222222 55566777888888899 9999998554
No 53
>PF11113 Phage_head_chap: Head assembly gene product; InterPro: IPR021049 This head assembly protein is also refereed to as gene product 40 (Gp40). A specific gp20-gp40 membrane insertion structure constitutes the T4 prohead assembly initiation complex [].
Probab=28.13 E-value=1e+02 Score=19.91 Aligned_cols=38 Identities=16% Similarity=0.132 Sum_probs=28.9
Q ss_pred eEEEecCCCCCeEEEEeeeeEecCccccceeeecCCCceEE
Q 032735 79 HIFITEGKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCF 119 (135)
Q Consensus 79 vItvee~~~~~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~ 119 (135)
+|+.++| ..++-++-..+++.|=++==|-|-.+..+.+
T Consensus 6 lI~l~dG---~~hiVYi~~~~~~~G~l~vdfsT~~e~~k~e 43 (56)
T PF11113_consen 6 LITLEDG---ESHIVYITELHYDDGKLKVDFSTPSEDRKEE 43 (56)
T ss_pred EEEcCCC---CEEEEEEEEEEEcCCeEEEEEeCCCcchhhH
Confidence 5666777 5688899999999998888888866644444
No 54
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.
Probab=27.54 E-value=44 Score=23.76 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=20.6
Q ss_pred hhccCCChhhhHHHHHHHHHhcc
Q 032735 53 TTSINGDKDIGALVARTIELVRK 75 (135)
Q Consensus 53 tisan~D~~iG~liaeA~~kVG~ 75 (135)
+|+.+.|...-++|++|++|.|.
T Consensus 20 sv~V~~~tt~~dvv~eaL~kfGl 42 (97)
T cd01783 20 SIRVNKDTTVQDVILEVLPLFGL 42 (97)
T ss_pred EEEecccchHHHHHHHHHHHhCc
Confidence 46777788999999999999999
No 55
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=27.23 E-value=2e+02 Score=23.53 Aligned_cols=104 Identities=12% Similarity=0.157 Sum_probs=55.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhccccc---CCHHHHHHHHhhccCCChhhhHHHHHHHHHhccCCceEEEecCCCCC--
Q 032735 15 LDDTEIRKGVQMAVDSVLENLSRSAQMI---STSEEIAQVATTSINGDKDIGALVARTIELVRKAEGHIFITEGKEPG-- 89 (135)
Q Consensus 15 ~nP~~l~rGi~~A~~~v~~~L~~~a~~v---~~~~~i~~VAtisan~D~~iG~liaeA~~kVG~~dGvItvee~~~~~-- 89 (135)
++|.+|+.-+.....++....+..-.++ +-.-.+++-+. .|+++.+.|++|+..+.+ +=.+-.-.+....
T Consensus 77 ~s~~el~~~v~yQigaL~~~a~~~g~~l~hVKPHGALYn~~~----~d~~lA~~i~~ai~~~~~-~l~l~~~ags~~~~~ 151 (242)
T PF03746_consen 77 ISPEELRDSVLYQIGALQAIAAAEGVPLHHVKPHGALYNMAA----KDEELARAIAEAIKAFDP-DLPLYGLAGSELEKA 151 (242)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHTT--EEEE---HHHHHHHH----H-HHHHHHHHHHHHHH-T-T-EEEEETTSHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCeeEEecccHHHHHHHh----cCHHHHHHHHHHHHHhCC-CcEEEEcCCcHHHHH
Confidence 4677777777776666555555444444 44566776653 599999999999999988 5333333222111
Q ss_pred ---eEEEEeeeeEecCccccceeeecCCCceEEeece
Q 032735 90 ---VKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSST 123 (135)
Q Consensus 90 ---~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p 123 (135)
.-+.++.=.=-||+|..-........--+++.||
T Consensus 152 A~~~Gl~~~~E~FADR~Y~~dG~Lv~R~~~gAvi~d~ 188 (242)
T PF03746_consen 152 AKELGLPVVFEAFADRAYDDDGSLVPRSQPGAVIHDP 188 (242)
T ss_dssp HHHCT--EEEEEETTBEB-TTSSBEETTSTTCB---H
T ss_pred HHHCCCcEEEEEEEcccCcCCCCEeecCCCCCccCCH
Confidence 1244444444699998877666555555666554
No 56
>PRK08990 flagellar motor protein PomA; Reviewed
Probab=26.88 E-value=1.3e+02 Score=24.59 Aligned_cols=35 Identities=11% Similarity=0.082 Sum_probs=27.7
Q ss_pred hhhhccCCChHHHHHHHHHHHHHHHHHHhhccccc
Q 032735 8 LLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMI 42 (135)
Q Consensus 8 l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v 42 (135)
+..+..|.+|.+++.-++...+...+.+++.++-.
T Consensus 109 l~l~vdg~~~~~i~~~l~~~~~~~~~~~~~~~~~l 143 (254)
T PRK08990 109 VDLLVDGHDGDVVRAALEKDIALTEERHETGIGIF 143 (254)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHhHhHHH
Confidence 66777789999999999999888887777644443
No 57
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=26.82 E-value=1.8e+02 Score=22.40 Aligned_cols=53 Identities=26% Similarity=0.500 Sum_probs=35.1
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHh-----hccCC-----ChhhhHHHHHHHHHhcc
Q 032735 13 AELDDTEIRKGVQMAVDSVLENLSRSAQMISTSEEIAQVAT-----TSING-----DKDIGALVARTIELVRK 75 (135)
Q Consensus 13 aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~~~~~i~~VAt-----isan~-----D~~iG~liaeA~~kVG~ 75 (135)
.-+|.-.|++||.+|.+. +||+ .++|..++. +-+.| ...||.++-+.+.++-.
T Consensus 59 e~F~r~Kl~~gl~~A~~K---------RpVs-~e~ie~~v~~ie~~Lr~~g~~EV~S~~IG~~VM~~Lk~lD~ 121 (156)
T COG1327 59 EPFDREKLRRGLIRACEK---------RPVS-SEQIEEAVSHIERQLRSSGEREVPSKEIGELVMEELKKLDE 121 (156)
T ss_pred CCCCHHHHHHHHHHHHhc---------CCCC-HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcch
Confidence 346888999999988542 6774 555555442 22222 45689999888887754
No 58
>PF05537 DUF759: Borrelia burgdorferi protein of unknown function (DUF759); InterPro: IPR008478 This entry consists of several uncharacterised proteins from Borrelia species including Borrelia burgdorferi and Borrelia garinii.
Probab=25.10 E-value=33 Score=30.38 Aligned_cols=19 Identities=21% Similarity=0.459 Sum_probs=16.2
Q ss_pred hhhhHHHHHHHHHhccCCceE
Q 032735 60 KDIGALVARTIELVRKAEGHI 80 (135)
Q Consensus 60 ~~iG~liaeA~~kVG~~dGvI 80 (135)
..+|++|+.||.+||. |.+
T Consensus 142 saLGnvi~na~sKvgG--G~l 160 (431)
T PF05537_consen 142 SALGNVIGNAISKVGG--GLL 160 (431)
T ss_pred HHHHHHHHHHHhhhcc--chH
Confidence 4589999999999998 654
No 59
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=24.62 E-value=88 Score=26.02 Aligned_cols=76 Identities=18% Similarity=0.306 Sum_probs=47.9
Q ss_pred HHHHHhhcccccCCHHHHHHHHhhccCCChhhhHHHHHHHHH--hcc---CCceEEEecCCCCCeEEEEeeeeE------
Q 032735 31 VLENLSRSAQMISTSEEIAQVATTSINGDKDIGALVARTIEL--VRK---AEGHIFITEGKEPGVKLNLYSGFK------ 99 (135)
Q Consensus 31 v~~~L~~~a~~v~~~~~i~~VAtisan~D~~iG~liaeA~~k--VG~---~dGvItvee~~~~~~~le~~eG~~------ 99 (135)
+.+.|++.... +..+|+ |.+|.+.+++.|=..--+-+++ +|. .||++-+=.-+.....+++=.|..
T Consensus 51 Leq~l~~L~~k--t~~Qia-Vv~vpSt~g~~IE~ya~rlfd~W~lG~k~~~dGvLLlVa~~dr~~rIevGyGLEg~ltD~ 127 (271)
T COG1512 51 LEQQLADLEQK--TGAQIA-VVTVPSTGGETIEQYATRLFDKWKLGDKAQDDGVLLLVAMNDRRVRIEVGYGLEGVLTDA 127 (271)
T ss_pred HHHHHHHHHhc--cCCeEE-EEEecCCCCCCHHHHHHHHHHhcCCCccccCCCEEEEEEcCCCeEEEEEecCcccccChH
Confidence 34445555554 445664 7789998889888877777777 772 278887765554455555544432
Q ss_pred ----ecCcccccee
Q 032735 100 ----LDWGYSSSCF 109 (135)
Q Consensus 100 ----fd~GYlSpyf 109 (135)
+=|.++.|+|
T Consensus 128 ~a~~iIr~~i~P~f 141 (271)
T COG1512 128 QAGRIIRETIAPAF 141 (271)
T ss_pred HHHHHHHhhhCccc
Confidence 2256667776
No 60
>COG1291 MotA Flagellar motor component [Cell motility and secretion]
Probab=24.29 E-value=1.1e+02 Score=25.43 Aligned_cols=66 Identities=21% Similarity=0.331 Sum_probs=44.1
Q ss_pred ccccchhhhccCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHH-------HHH----HHhhccCCChh-hhHHHHHHH
Q 032735 3 NEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMISTSEE-------IAQ----VATTSINGDKD-IGALVARTI 70 (135)
Q Consensus 3 ~eg~~l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~~~~~-------i~~----VAtisan~D~~-iG~liaeA~ 70 (135)
+.| ++.+--|.+|.+++.=|+.-.+..-+..+.-++-.++-.+ +.. |.+..+-+||+ +|..||-|+
T Consensus 110 ~~g--lrliVdG~~~~~I~~~me~Ei~~~ee~~~~~a~~~~~~g~~aPa~GivgaV~GlI~~l~~l~~p~~LG~~iA~Al 187 (266)
T COG1291 110 KDG--LRLIVDGNDPEEIEALMEEEIETMEERHEKPAHAFTTAGDYAPAFGIVGAVMGLIHALGNLDDPAELGALIAAAL 187 (266)
T ss_pred HHh--HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 456 8999999999999999999988877776654444332211 221 22334434554 888888886
No 61
>PF11268 DUF3071: Protein of unknown function (DUF3071); InterPro: IPR021421 Some members in this family of proteins are annotated as DNA-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=24.24 E-value=1.2e+02 Score=23.50 Aligned_cols=62 Identities=18% Similarity=0.164 Sum_probs=40.6
Q ss_pred hhccCCChHHHHHHHHHHHHHHHHHHhhcccccCCH-HHHHHHHhhccCC-C-----hhhhHHHHHHHHHhcc
Q 032735 10 LENAELDDTEIRKGVQMAVDSVLENLSRSAQMISTS-EEIAQVATTSING-D-----KDIGALVARTIELVRK 75 (135)
Q Consensus 10 ~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~v~~~-~~i~~VAtisan~-D-----~~iG~liaeA~~kVG~ 75 (135)
.|-+|+.|-++..-.... ++.++..+.||--. +.+++.|.-+.-. + ..+|+++++++..-|.
T Consensus 65 rIRaGas~eeVA~~~G~~----~~rV~rfa~PVlaER~~~ae~A~~~~~~~~dg~~~~tL~e~v~~~laarG~ 133 (170)
T PF11268_consen 65 RIRAGASAEEVAEEAGVP----VERVRRFAGPVLAERERAAEQARQVHPVREDGPAVPTLGEVVAERLAARGV 133 (170)
T ss_pred HHHCCCCHHHHHHHhCCC----HHHhhhcccHHHHHHHHHHHHHhhCCCCCCCCCCcCcHHHHHHHHHHHcCC
Confidence 456777777776654444 44667788898433 5566666433211 1 2799999999998777
No 62
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=23.34 E-value=49 Score=19.25 Aligned_cols=15 Identities=13% Similarity=0.098 Sum_probs=9.1
Q ss_pred CccccceeeecCCCc
Q 032735 102 WGYSSSCFVTNKKKK 116 (135)
Q Consensus 102 ~GYlSpyfvTd~~~~ 116 (135)
++|++||+--+....
T Consensus 9 ~aylNp~~~~~~~~~ 23 (40)
T PF04810_consen 9 RAYLNPFCQFDDGGK 23 (40)
T ss_dssp --BS-TTSEEETTTT
T ss_pred CCEECCcceEcCCCC
Confidence 589999998776543
No 63
>PRK08124 flagellar motor protein MotA; Validated
Probab=22.76 E-value=1.6e+02 Score=24.00 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=26.6
Q ss_pred hhhhccCCChHHHHHHHHHHHHHHHHHHhhcccc
Q 032735 8 LLLENAELDDTEIRKGVQMAVDSVLENLSRSAQM 41 (135)
Q Consensus 8 l~~v~aG~nP~~l~rGi~~A~~~v~~~L~~~a~~ 41 (135)
++.+..|.+|-+++.-++...+...+.+++..+-
T Consensus 113 l~~~v~g~~~~~i~~~le~~i~~~~~~~~~~~~~ 146 (263)
T PRK08124 113 LKMVIDGQSPEFIRDVLEEEIEAMEERHAAGAAI 146 (263)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 6777678999999999999988877776654443
No 64
>PF08787 Alginate_lyase2: Alginate lyase; InterPro: IPR014895 Alginate lyases are enzymes that degrade the linear polysaccharide alignate. They cleave the glycosidic linkage of alignate through a beta-elimination reaction. This region forms an all beta fold, which is different to the all alpha fold of IPR008397 from INTERPRO. ; PDB: 1VAV_B 1UAI_A 1J1T_A 2Z42_A 2ZAC_A 2ZAB_A 2ZAA_A 2ZA9_A 2CWS_A.
Probab=22.04 E-value=63 Score=25.68 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=17.0
Q ss_pred eEecCcccc-ceeeecCCCceEEeece
Q 032735 98 FKLDWGYSS-SCFVTNKKKKLCFQSST 123 (135)
Q Consensus 98 ~~fd~GYlS-pyfvTd~~~~~~~l~~p 123 (135)
-++..||-+ |||.++.+....+|--|
T Consensus 23 ~~l~~gy~~~~~fy~~~~~g~~vF~~p 49 (236)
T PF08787_consen 23 SELNGGYSSDPYFYTDSDDGAMVFWAP 49 (236)
T ss_dssp HHHHTT--BTTTEEEETTTTEEEEEEE
T ss_pred HHhhcccccCCeEEECCCCCeEEEEeC
Confidence 345559999 99999988666666543
No 65
>COG4383 Mu-like prophage protein gp29 [Function unknown]
Probab=21.48 E-value=93 Score=27.82 Aligned_cols=48 Identities=13% Similarity=0.228 Sum_probs=35.4
Q ss_pred hhhhHHHHHHHHHhccCCceEEEecCCCCCeEEEEeeeeEecCccc---cceeeecCCC
Q 032735 60 KDIGALVARTIELVRKAEGHIFITEGKEPGVKLNLYSGFKLDWGYS---SSCFVTNKKK 115 (135)
Q Consensus 60 ~~iG~liaeA~~kVG~~dGvItvee~~~~~~~le~~eG~~fd~GYl---SpyfvTd~~~ 115 (135)
+..-++|-++++.||+ |.-.+| .|..++.||.+-|-|+ +.||.+|++.
T Consensus 115 ~~~edmifD~~DAv~~--Gfs~~E------iE~~~~ggl~l~rn~~~R~~~wF~~~~~d 165 (517)
T COG4383 115 PWLEDMIFDLTDAVGH--GFSCLE------IEWGFSGGLYLPRNFIHRPQGWFKWDKDD 165 (517)
T ss_pred chHHHHHHHHHHHHhc--Ccceee------eehhhcCceeechheeccCcccccccccc
Confidence 4677899999999998 665444 4556777888777765 5689888764
No 66
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=21.47 E-value=62 Score=27.38 Aligned_cols=34 Identities=24% Similarity=0.208 Sum_probs=28.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhcccccCCHHHH
Q 032735 15 LDDTEIRKGVQMAVDSVLENLSRSAQMISTSEEI 48 (135)
Q Consensus 15 ~nP~~l~rGi~~A~~~v~~~L~~~a~~v~~~~~i 48 (135)
++|..++-|.++|.+.|-..|++.-.||-..-+|
T Consensus 7 A~prGFCaGV~RAI~ive~al~~~g~pIyv~~eI 40 (294)
T COG0761 7 AKPRGFCAGVDRAIQIVERALEEYGAPIYVRHEI 40 (294)
T ss_pred ecCCccchhHHHHHHHHHHHHHHcCCCeEEEecc
Confidence 4799999999999999999999988887543333
No 67
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=21.40 E-value=74 Score=27.35 Aligned_cols=57 Identities=18% Similarity=0.314 Sum_probs=39.6
Q ss_pred HHHHHhhcccccCCHHHHHHHHhhccCC------ChhhhHHHHHHHHHhccCCceEEEecCCCCCeEEEEe
Q 032735 31 VLENLSRSAQMISTSEEIAQVATTSING------DKDIGALVARTIELVRKAEGHIFITEGKEPGVKLNLY 95 (135)
Q Consensus 31 v~~~L~~~a~~v~~~~~i~~VAtisan~------D~~iG~liaeA~~kVG~~dGvItvee~~~~~~~le~~ 95 (135)
+-++|++.-..+ .||+||... |.++++-+-+.+++.+. |++|-|.+|...+.-+-++
T Consensus 56 iydeL~~~Gedv-------eVA~VsG~~~~~v~ad~~I~~qld~vl~~~~~-~~~i~VsDGaeDE~vlPiI 118 (344)
T PF04123_consen 56 IYDELKAEGEDV-------EVAVVSGSPDVGVEADRKIAEQLDEVLSKFDP-DSAIVVSDGAEDERVLPII 118 (344)
T ss_pred HHHHHHhcCCCe-------EEEEEECCCCCchhhHHHHHHHHHHHHHhCCC-CEEEEEecChhhhhhhHhh
Confidence 455666542222 367777643 67788899999999999 9999999987654444333
No 68
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=21.14 E-value=42 Score=31.26 Aligned_cols=51 Identities=16% Similarity=0.280 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhhcccccCCHHHHHHHHhhccCCChhhhHHHHHHHHHh
Q 032735 23 GVQMAVDSVLENLSRSAQMISTSEEIAQVATTSINGDKDIGALVARTIELV 73 (135)
Q Consensus 23 Gi~~A~~~v~~~L~~~a~~v~~~~~i~~VAtisan~D~~iG~liaeA~~kV 73 (135)
||+++.+.+++.|+..+...+.+..|-..+.=...|=..+++.|+++|++.
T Consensus 80 Glee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 80 GMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 999999999999988888877776666665555556788999999999987
No 69
>COG3060 MetJ Transcriptional regulator of met regulon [Transcription / Amino acid transport and metabolism]
Probab=20.83 E-value=33 Score=24.23 Aligned_cols=14 Identities=14% Similarity=0.007 Sum_probs=10.6
Q ss_pred EecCccccceeeec
Q 032735 99 KLDWGYSSSCFVTN 112 (135)
Q Consensus 99 ~fd~GYlSpyfvTd 112 (135)
.||--|+|||---.
T Consensus 3 ~w~g~yispyaehg 16 (105)
T COG3060 3 EWSGEYISPYAEHG 16 (105)
T ss_pred CcCccccCHHHhcc
Confidence 47888999997543
No 70
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=20.61 E-value=1.8e+02 Score=26.63 Aligned_cols=115 Identities=18% Similarity=0.213 Sum_probs=74.5
Q ss_pred hhhhccCCChHHHHHHHHHHHHHHHHHHh-hcccccC--CHHHHHHHHhhccCCChh-------hhHHHHHHHHHhccC-
Q 032735 8 LLLENAELDDTEIRKGVQMAVDSVLENLS-RSAQMIS--TSEEIAQVATTSINGDKD-------IGALVARTIELVRKA- 76 (135)
Q Consensus 8 l~~v~aG~nP~~l~rGi~~A~~~v~~~L~-~~a~~v~--~~~~i~~VAtisan~D~~-------iG~liaeA~~kVG~~- 76 (135)
-+.+..+.+|..+..|...|...++++.+ ..+.|++ +++-+.++|..|- .+.- -++++.+|+..+---
T Consensus 108 ~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsm-sSK~i~~ds~~f~~~Vvda~l~v~~~~ 186 (545)
T KOG0360|consen 108 DELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSM-SSKIIGMDSDFFTEMVVDALLAVKILD 186 (545)
T ss_pred HHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhh-cceecccchHHHHHHHHHHHHHHhhcc
Confidence 46778899999999999999999998886 4677775 4577778875443 2333 466788888765320
Q ss_pred ---CceEEEe-------cCCCCCeEEEEeeeeEecCccccceeeecCCCceEEeeceeEEEeccc
Q 032735 77 ---EGHIFIT-------EGKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGET 131 (135)
Q Consensus 77 ---dGvItve-------e~~~~~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~ILitd~k 131 (135)
++.+.+. -|++ ..+.-++.|+-++..-.|..|- -...|+.|...|-.
T Consensus 187 ~~ge~~ypi~~vnILkahG~s-~~eS~l~~GyaLnc~~asq~m~-------~~i~~~Kiacld~~ 243 (545)
T KOG0360|consen 187 INGEPHYPINSVNILKAHGKS-QIESMLLPGYALNCSVASQMMP-------LRIKNAKIACLDFT 243 (545)
T ss_pred cCCceeccccceeEEecCCcc-chhheeecceeeeccHhhhccc-------cccccceeeeEecc
Confidence 2333333 2222 3455577787777766665542 23337777766643
No 71
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=20.58 E-value=40 Score=28.71 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=43.7
Q ss_pred CChhhhHHHHHHHHHhccCCceEEEecCCCCCeEEEEeeeeEecCccccceeeecCCCceEEeeceeEE
Q 032735 58 GDKDIGALVARTIELVRKAEGHIFITEGKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLF 126 (135)
Q Consensus 58 ~D~~iG~liaeA~~kVG~~dGvItvee~~~~~~~le~~eG~~fd~GYlSpyfvTd~~~~~~~l~~p~IL 126 (135)
+.+-.++++|+.++..|- |-++|+.-=. .--..+... -+|.-|-.|.|.-.-...- .++||.|+
T Consensus 105 repIsaklvA~lL~~aG~-drv~TvDlH~--~qiqgfFdi-pvdnl~a~p~l~~~~~~~~-~~~d~vVV 168 (314)
T COG0462 105 REPISAKLVANLLETAGA-DRVLTVDLHA--PQIQGFFDI-PVDNLYAAPLLAEYIREKY-DLDDPVVV 168 (314)
T ss_pred CCCEeHHHHHHHHHHcCC-CeEEEEcCCc--hhhcccCCC-ccccccchHHHHHHHHHhc-CCCCcEEE
Confidence 466778999999999999 9999998431 122334433 6788888887765433333 56666655
No 72
>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.
Probab=20.51 E-value=49 Score=25.58 Aligned_cols=19 Identities=16% Similarity=0.538 Sum_probs=14.8
Q ss_pred EeeeeEec--Ccc-ccceeeec
Q 032735 94 LYSGFKLD--WGY-SSSCFVTN 112 (135)
Q Consensus 94 ~~eG~~fd--~GY-lSpyfvTd 112 (135)
..||+++| +++ +||+|-..
T Consensus 24 ~FeG~R~d~~K~~~ls~~FqvS 45 (161)
T TIGR00989 24 MFTGLRADVTKAFSLAPLFQVS 45 (161)
T ss_pred ccccEEEEEecccccCCceeEE
Confidence 56899987 888 79998553
Done!