Query 032739
Match_columns 135
No_of_seqs 117 out of 342
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 08:14:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032739.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032739hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_a 60S ribosomal protein L 100.0 5.3E-74 1.8E-78 435.6 -8.7 135 1-135 1-136 (136)
2 3izc_a 60S ribosomal protein R 100.0 1.1E-73 3.7E-78 433.9 -8.2 135 1-135 1-136 (136)
3 4a18_N RPL27, ribosomal protei 100.0 3.5E-67 1.2E-71 401.4 7.9 134 1-135 1-144 (144)
4 4a18_E RPL6; ribosome, eukaryo 99.9 4.1E-24 1.4E-28 169.6 8.4 77 1-102 41-119 (191)
5 2joy_A 50S ribosomal protein L 99.8 1.1E-20 3.9E-25 134.9 6.1 64 1-90 1-64 (96)
6 3iz5_N 60S ribosomal protein L 99.8 2.4E-20 8.2E-25 141.1 6.2 61 2-91 4-64 (134)
7 3izc_N 60S ribosomal protein R 99.7 1.9E-17 6.4E-22 125.8 6.7 63 2-91 12-74 (138)
8 4a18_F RPL14; ribosome, eukary 99.7 1E-16 3.6E-21 120.1 6.5 61 2-91 4-65 (126)
9 3izc_G 60S ribosomal protein R 99.6 1.6E-16 5.5E-21 124.8 5.7 88 4-120 33-125 (176)
10 3j21_5 50S ribosomal protein L 99.6 3.4E-16 1.2E-20 109.5 6.0 63 1-90 1-63 (83)
11 3iz5_G 60S ribosomal protein L 99.6 2.2E-16 7.5E-21 127.5 5.4 87 4-119 74-165 (219)
12 2zjr_R 50S ribosomal protein L 93.6 0.06 2E-06 39.2 3.6 40 4-49 15-54 (115)
13 3r8s_U 50S ribosomal protein L 93.5 0.078 2.7E-06 37.9 4.1 39 5-50 4-42 (102)
14 3j21_U 50S ribosomal protein L 93.1 0.091 3.1E-06 38.6 4.0 39 5-49 46-84 (121)
15 1vq8_T 50S ribosomal protein L 92.7 0.12 4.1E-06 38.0 4.1 38 5-48 43-80 (120)
16 2zkr_t 60S ribosomal protein L 92.5 0.11 3.7E-06 39.4 3.8 38 5-48 49-87 (145)
17 3v2d_Y 50S ribosomal protein L 92.5 0.09 3.1E-06 38.0 3.2 40 4-49 6-45 (110)
18 3u5e_Y L33, YL33, 60S ribosoma 90.8 0.21 7.2E-06 37.1 3.6 39 5-49 50-88 (127)
19 2ftc_N Mitochondrial ribosomal 90.7 0.31 1E-05 34.4 4.3 35 9-49 2-36 (96)
20 3iz5_Y 60S ribosomal protein L 90.6 0.25 8.6E-06 37.7 4.0 39 5-49 49-87 (150)
21 4a17_S RPL26, 60S ribosomal pr 90.5 0.28 9.6E-06 36.8 4.2 39 5-49 49-87 (135)
22 2do3_A Transcription elongatio 88.4 0.45 1.5E-05 32.0 3.5 31 2-32 15-45 (69)
23 3bbo_W Ribosomal protein L24; 84.0 0.15 5.3E-06 40.2 -0.7 40 5-50 69-108 (191)
24 2ckk_A KIN17; beta barrel, rib 64.2 7.7 0.00026 28.1 4.0 26 6-31 72-97 (127)
25 1nz9_A Transcription antitermi 49.0 19 0.00065 21.9 3.4 27 5-31 5-31 (58)
26 3kbg_A 30S ribosomal protein S 41.8 18 0.0006 28.7 3.0 24 5-28 139-162 (213)
27 3j20_E 30S ribosomal protein S 39.3 20 0.00069 28.9 3.0 24 5-28 179-202 (243)
28 3p8b_B Transcription antitermi 37.8 44 0.0015 23.9 4.4 29 4-32 91-119 (152)
29 2xzm_W 40S ribosomal protein S 35.5 25 0.00086 28.7 3.0 23 5-27 177-199 (260)
30 3iz6_D 40S ribosomal protein S 35.0 26 0.00089 28.7 3.0 24 5-28 175-198 (265)
31 2e70_A Transcription elongatio 27.8 1E+02 0.0035 20.3 4.6 25 7-31 20-44 (71)
32 2e6z_A Transcription elongatio 27.3 42 0.0014 20.8 2.4 26 5-30 8-33 (59)
33 2ckk_A KIN17; beta barrel, rib 26.5 88 0.003 22.3 4.4 29 4-32 14-46 (127)
34 2jvv_A Transcription antitermi 24.4 71 0.0024 23.3 3.6 28 4-31 127-154 (181)
No 1
>3iz5_a 60S ribosomal protein L27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_a
Probab=100.00 E-value=5.3e-74 Score=435.60 Aligned_cols=135 Identities=80% Similarity=1.269 Sum_probs=97.3
Q ss_pred CcccccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecccccccccccchhhHhhhccccceeEeeeccce
Q 032739 1 MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAKKTAKKSRVKAFIKLVNQSHL 80 (135)
Q Consensus 1 m~k~~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ryP~kvt~~M~kkki~krskiK~FvK~vN~nHl 80 (135)
|||||+||+|||+|+|||||+|||||+++||||+||||+||||||||+||++||++||+++++|||+||||||+||||||
T Consensus 1 M~K~~kpGkVvivl~GryaGkKaVivk~~d~gt~drpy~halVaGIdryP~kvt~~M~kkki~KrskiK~FvKv~NynHl 80 (136)
T 3iz5_a 1 MVKFLKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKCFLKLVNFTHL 80 (136)
T ss_dssp CCSSCCCCCSCCCCCSSSSCCCCBCSCCSSSSSCSCSSCCSCCBCCSTTTTCCCCCCSSSCCCCCHHHHHHHHHHHHHHH
T ss_pred CcccccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEeeccCChhhccCCCHHHhhhhhhceeeeEEEeecce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeEeeccccccc-CcccccChhHHHHHHHHHHHHHHHHhhcCCceEEeeecCC
Q 032739 81 MPTRYTLDVDLKDVI-NPDVLQTKDKKVTAAKETKRRLEERFKTGKNRWFFSKLRF 135 (135)
Q Consensus 81 ~pTry~vdi~~k~~v-~~~~~~d~~~k~~akke~k~~fee~y~~gk~~wfF~KLrF 135 (135)
|||||+|||+|++++ |.|.|+||++|++|++|++..|||+|++|+|+|||++|||
T Consensus 81 mPTRY~vdi~lK~~v~~~d~~~dp~~k~~a~~~~k~~feeryk~gKnkwfF~kLrF 136 (136)
T 3iz5_a 81 MPTRYTLDVDLKEVAAGPDALATRDKKVAACKSAKARLEDRFKTGKNRWFFTKLRF 136 (136)
T ss_dssp HHHHHHHHHHHHHHHHSCC-------------------------------------
T ss_pred eccceEeecchhheecCHHHhcChhHhHHHHHHHHHHHHHHHhcCCCceeeeecCC
Confidence 999999999999898 9999999999999999999999999999999999999998
No 2
>3izc_a 60S ribosomal protein RPL27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_a 3u5e_Z 3u5i_Z 4b6a_Z
Probab=100.00 E-value=1.1e-73 Score=433.88 Aligned_cols=135 Identities=51% Similarity=0.971 Sum_probs=93.1
Q ss_pred CcccccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecccccccccccchhhHhhhccccceeEeeeccce
Q 032739 1 MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAKKTAKKSRVKAFIKLVNQSHL 80 (135)
Q Consensus 1 m~k~~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ryP~kvt~~M~kkki~krskiK~FvK~vN~nHl 80 (135)
|||||+||+|||+|+|||||+|||||+++||||+||||+||||||||+||++||++||+++++|||+||||||+||||||
T Consensus 1 M~Kf~kpGkVvivl~GryaGkKaVivk~~d~gt~d~py~halVaGIdryP~kvt~~Mgkkki~KrskiK~FvKv~NynHl 80 (136)
T 3izc_a 1 MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNYNHL 80 (136)
T ss_dssp ----CCCCCCCBCCCSSSSCCBCBCCCCSSSCSCCSSSCCSCCBCCSSSSCCCCCCSSSCCCCCCTTHHHHHHHHHHHHH
T ss_pred CCccccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEecccCChhhhhccCHHHHHhhhhceeeeEEEeccce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeEeecc-cccccCcccccChhHHHHHHHHHHHHHHHHhhcCCceEEeeecCC
Q 032739 81 MPTRYTLDVD-LKDVINPDVLQTKDKKVTAAKETKRRLEERFKTGKNRWFFSKLRF 135 (135)
Q Consensus 81 ~pTry~vdi~-~k~~v~~~~~~d~~~k~~akke~k~~fee~y~~gk~~wfF~KLrF 135 (135)
|||||+|||+ ++++++.|.|+||++|++|++|++..|||+|++|+|+|||++|||
T Consensus 81 mPTRy~vdi~~~K~~v~~d~~~dp~~k~~a~~~~k~~feeryk~gKnkwfF~kLrF 136 (136)
T 3izc_a 81 LPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF 136 (136)
T ss_dssp HHHHHHHHHHHHHHHHSCC-------------------------------------
T ss_pred eeeeeeEcccccccccCHHHhcChhHhHHHHHHHHHHHHHHHhcCCccEeeeecCC
Confidence 9999999999 489999999999999999999999999999999999999999998
No 3
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=100.00 E-value=3.5e-67 Score=401.42 Aligned_cols=134 Identities=46% Similarity=0.822 Sum_probs=132.1
Q ss_pred CcccccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecccccccccccchhhHhhhccccceeEeeeccce
Q 032739 1 MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAKKTAKKSRVKAFIKLVNQSHL 80 (135)
Q Consensus 1 m~k~~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ryP~kvt~~M~kkki~krskiK~FvK~vN~nHl 80 (135)
||+|++||+|||||+|||||+|||||+++||||+||||+||||||||+||++||++||++++++||+||||||+||||||
T Consensus 1 M~kf~kpGrVvivl~Gr~aGkkaVIvk~iD~gt~d~~y~~aLVaGIdryP~kvt~~m~kkki~kRskiK~FvK~vN~~Hl 80 (144)
T 4a18_N 1 MAKFLKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRMGSKKIQKRTSVKPFIKYVNLNHI 80 (144)
T ss_dssp -CCCCCTTEEEEECSSTTTTCEEEEEEEESSCCSSCCSCEEEEEEEEECCCCCCSSCCHHHHHHTTCCEEEEEEEEGGGE
T ss_pred CCccccCCeEEEEecCCcCCCEEEEEEecCCCccCCccceEEEEecccCCchhccccchheeccccccceeEEEEeeeeE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeEe--ecccccccCcccccChhHHHHHHHHHHHHHHHHh--------hcCCceEEeeecCC
Q 032739 81 MPTRYTL--DVDLKDVINPDVLQTKDKKVTAAKETKRRLEERF--------KTGKNRWFFSKLRF 135 (135)
Q Consensus 81 ~pTry~v--di~~k~~v~~~~~~d~~~k~~akke~k~~fee~y--------~~gk~~wfF~KLrF 135 (135)
|||||+| ||+|++++++|.|+| ++|++|+++++..|||+| ++|+|+|||+||||
T Consensus 81 ~pTry~v~~di~lK~~v~~d~~~~-~~k~~a~~~~k~~feery~~~~~~~kk~gknkwfF~kLrF 144 (144)
T 4a18_N 81 MPTRYSVKELCDFKELVKEDKIKN-NAKSEVRDTLKKVFVEKYRTINPEEKSASHTKFFFSKLRF 144 (144)
T ss_dssp EEEEEECSTTCCHHHHSCHHHHHT-TCHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHCCCCC
T ss_pred EEeeEEeeccCchhhccCHHHhhh-hHhHHHHHHHHHHHHHHhhhccccccccCCceEeeeecCC
Confidence 9999999 999999999999999 999999999999999999 99999999999998
No 4
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E
Probab=99.90 E-value=4.1e-24 Score=169.61 Aligned_cols=77 Identities=27% Similarity=0.498 Sum_probs=70.3
Q ss_pred CcccccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecccccccccccchhhHhhhccccceeEeeeccce
Q 032739 1 MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAKKTAKKSRVKAFIKLVNQSHL 80 (135)
Q Consensus 1 m~k~~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ryP~kvt~~M~kkki~krskiK~FvK~vN~nHl 80 (135)
|.++|+||+|||+|+|||||+|||+||++|+| ++||+| |.+|+ ++|++++|++|+
T Consensus 41 lr~si~pGtVlIiL~Gr~~GKrvV~LKql~sg-------llLVtG----P~~vn--------------~vplrrvn~~~v 95 (191)
T 4a18_E 41 LRNDIAPGTVLILLAGRFRGKRVVFLKQLKSG-------LLLVTG----PYKVN--------------GVPLKRVNQAYT 95 (191)
T ss_dssp CCTTCCTTEEEEECSSTTTTBEEEEEEECTTS-------CEEEEC----CTTTS--------------SCCSEEECGGGE
T ss_pred hhccccCCCEEEEeccccCCCEEEEEEecCCC-------eEEEec----Ccccc--------------CCceEEEeeeeE
Confidence 56799999999999999999999999999998 999999 99998 689999999999
Q ss_pred eeeeeEeecc-cc-cccCcccccC
Q 032739 81 MPTRYTLDVD-LK-DVINPDVLQT 102 (135)
Q Consensus 81 ~pTry~vdi~-~k-~~v~~~~~~d 102 (135)
|||||+|||+ ++ ..+|+++|+.
T Consensus 96 i~TstkvDis~vki~~~~d~YF~k 119 (191)
T 4a18_E 96 LSTSTKVDLTGVNTAKFEDDYFGR 119 (191)
T ss_dssp EEEEEECCCTTCCGGGCCGGGSCC
T ss_pred EeeeeEeecccccccccCHHHhcc
Confidence 9999999998 63 3488888774
No 5
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=99.82 E-value=1.1e-20 Score=134.87 Aligned_cols=64 Identities=34% Similarity=0.510 Sum_probs=56.5
Q ss_pred CcccccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecccccccccccchhhHhhhccccceeEeeeccce
Q 032739 1 MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAKKTAKKSRVKAFIKLVNQSHL 80 (135)
Q Consensus 1 m~k~~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ryP~kvt~~M~kkki~krskiK~FvK~vN~nHl 80 (135)
|+ +++||+||++++|||||++||||+++|+| |+||+|.++++ ..+| |++|++||
T Consensus 1 M~-~v~~GrVv~~~~Gr~~Gk~~VIv~~iD~~-------~vLV~gp~~~~-----------~~~r-------k~~n~khl 54 (96)
T 2joy_A 1 MP-AIEVGRICVKVKGREAGSKCVIVDIIDDN-------FVLVTGPKDIT-----------GVKR-------RRVNILHL 54 (96)
T ss_dssp CC-SSSTTEEEECSSSSTTCCEEEEEEECSSS-------CEEEECCTTTT-----------CCCC-------EEESCSSC
T ss_pred CC-ccccCEEEEEeecCCCCCEEEEEEEeCCC-------EEEEECCcccC-----------CcCC-------EEEchHHE
Confidence 78 99999999999999999999999999999 99999976663 1222 67899999
Q ss_pred eeeeeEeecc
Q 032739 81 MPTRYTLDVD 90 (135)
Q Consensus 81 ~pTry~vdi~ 90 (135)
+||+|++|++
T Consensus 55 ~~T~~~vdi~ 64 (96)
T 2joy_A 55 EPTDKKIDIQ 64 (96)
T ss_dssp EEEEEECCCC
T ss_pred EEeeEEEeCC
Confidence 9999999965
No 6
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=99.81 E-value=2.4e-20 Score=141.08 Aligned_cols=61 Identities=21% Similarity=0.294 Sum_probs=56.3
Q ss_pred cccccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecccccccccccchhhHhhhccccceeEeeecccee
Q 032739 2 VKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAKKTAKKSRVKAFIKLVNQSHLM 81 (135)
Q Consensus 2 ~k~~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ryP~kvt~~M~kkki~krskiK~FvK~vN~nHl~ 81 (135)
.+|++||+||++++|||||++||||+++|++ ||||.|.+ +|+ +.+|++||+
T Consensus 4 ~rfvevGRVV~i~~Gr~aGk~avIV~iiD~~-------rvLVdG~~-v~R---------------------k~~n~khL~ 54 (134)
T 3iz5_N 4 KRFVEIGRVALVNYGKDYGRLVVIVDVVDQN-------RALVDAPD-MVR---------------------CQINFKRLS 54 (134)
T ss_dssp CCSCCSSEEEECSCCSSSCCEEEEEEECSSS-------EEEEEETT-EEE---------------------EEEECTTSE
T ss_pred ccccccCeEEEEeeCCCCCCEEEEEEEcCCC-------eEEEeCCC-ccc---------------------eeechhHeE
Confidence 4799999999999999999999999999998 99999977 665 378999999
Q ss_pred eeeeEeeccc
Q 032739 82 PTRYTLDVDL 91 (135)
Q Consensus 82 pTry~vdi~~ 91 (135)
||+|.+||+.
T Consensus 55 lT~~~v~i~r 64 (134)
T 3iz5_N 55 LTDIKIDIKR 64 (134)
T ss_dssp EEEEECCCCS
T ss_pred EeCEEEeccC
Confidence 9999999985
No 7
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=99.70 E-value=1.9e-17 Score=125.80 Aligned_cols=63 Identities=21% Similarity=0.417 Sum_probs=54.4
Q ss_pred cccccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecccccccccccchhhHhhhccccceeEeeecccee
Q 032739 2 VKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAKKTAKKSRVKAFIKLVNQSHLM 81 (135)
Q Consensus 2 ~k~~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ryP~kvt~~M~kkki~krskiK~FvK~vN~nHl~ 81 (135)
.+|++||+||++++|||||++||||+++|+| +|||.| |. +| ..| +.+|++||+
T Consensus 12 ~rfve~GrVV~i~~Gr~aGk~avIV~iiD~~-------rVLVDG----p~-----~g----V~R-------~~~n~khL~ 64 (138)
T 3izc_N 12 WRLVEVGRVVLIKKGQSAGKLAAIVEIIDQK-------KVLIDG----PK-----AG----VPR-------QAINLGQVV 64 (138)
T ss_dssp CCCSSTTEEEECCSCSSSCCEEEEEEECSSS-------EEEEEC----SS-----SS----CCC-------EEEECSSSE
T ss_pred hhhcccCeEEEEeeCCCCCCEEEEEEEecCC-------EEEEEc----CC-----CC----ccc-------ceechhHeE
Confidence 5799999999999999999999999999998 999999 42 11 122 357999999
Q ss_pred eeeeEeeccc
Q 032739 82 PTRYTLDVDL 91 (135)
Q Consensus 82 pTry~vdi~~ 91 (135)
||+|.+||+.
T Consensus 65 lT~~~v~i~r 74 (138)
T 3izc_N 65 LTPLTFALPR 74 (138)
T ss_dssp EEEEECCCCS
T ss_pred EecEEEEccC
Confidence 9999999985
No 8
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=99.66 E-value=1e-16 Score=120.15 Aligned_cols=61 Identities=23% Similarity=0.410 Sum_probs=55.6
Q ss_pred cccccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecccccccccccchhhHhhhccccceeEeeecccee
Q 032739 2 VKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAKKTAKKSRVKAFIKLVNQSHLM 81 (135)
Q Consensus 2 ~k~~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ryP~kvt~~M~kkki~krskiK~FvK~vN~nHl~ 81 (135)
.+|+++|+||+++.|+|||+.||||..+|++ +|||.|.+ +|+. .+|++||+
T Consensus 4 ~rfvevGRVv~i~~G~~aGklavIVdIID~n-------rvLVdGp~-V~Rq---------------------~~n~k~l~ 54 (126)
T 4a18_F 4 NKFVQVGRVVYINYGADKGKLAVIVNIINQN-------RILIDGEH-IVRQ---------------------VIPIRRVH 54 (126)
T ss_dssp CCEEETTEEEEECSSTTTTEEEEEEEEETTT-------EEEEEETT-EEEE---------------------EEEGGGEE
T ss_pred ccceecceEEEEccCCccCCEEEEEEEecCC-------eEEEeCCC-cccc---------------------eeeccceE
Confidence 4799999999999999999999999999998 99999966 5553 78999999
Q ss_pred eeeeEee-ccc
Q 032739 82 PTRYTLD-VDL 91 (135)
Q Consensus 82 pTry~vd-i~~ 91 (135)
||.|.++ |+-
T Consensus 55 LT~~~v~~i~r 65 (126)
T 4a18_F 55 LTKFQIDNVEL 65 (126)
T ss_dssp EEEEECTTCCT
T ss_pred EcceeccccCC
Confidence 9999998 984
No 9
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G 3o58_F 3o5h_F 3u5e_E 3u5i_E 4b6a_E
Probab=99.64 E-value=1.6e-16 Score=124.76 Aligned_cols=88 Identities=23% Similarity=0.478 Sum_probs=71.6
Q ss_pred cccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEee---ecccccccccccchhhHhhhccccceeEeeeccce
Q 032739 4 FLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAG---VAKYPVKVVRKDSAKKTAKKSRVKAFIKLVNQSHL 80 (135)
Q Consensus 4 ~~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaG---I~ryP~kvt~~M~kkki~krskiK~FvK~vN~nHl 80 (135)
.+.||+|+|+|+|||+|+++|++|++|+| .+||+| |+++|.+ ++|++|+
T Consensus 33 Si~pGtvlIil~Gr~~GkrvVfLKql~sg-------lllVTGP~~lNgvplr---------------------R~~q~~v 84 (176)
T 3izc_G 33 SLVPGTVLILLAGRFRGKRVVYLKHLEDN-------TLLISGPFKVNGVPLR---------------------RVNARYV 84 (176)
T ss_dssp HCCCCSCEECCSSSSSCCCBEEEEESSSS-------SEEEECCCSSSCCCCE---------------------EESSSSC
T ss_pred cCCCCCEEEEeccccCCCEEEEEEecCCC-------eEEEecCceecCCcce---------------------eeecceE
Confidence 57899999999999999999999999999 899999 6666644 7899999
Q ss_pred eeeeeEeecc-cc-cccCcccccChhHHHHHHHHHHHHHHHH
Q 032739 81 MPTRYTLDVD-LK-DVINPDVLQTKDKKVTAAKETKRRLEER 120 (135)
Q Consensus 81 ~pTry~vdi~-~k-~~v~~~~~~d~~~k~~akke~k~~fee~ 120 (135)
++|...|||+ ++ +.+|+++|+...+ .+.+++..++|.+.
T Consensus 85 IaTstkidis~vki~~l~D~YF~k~k~-~k~k~~E~eiF~~~ 125 (176)
T 3izc_G 85 IATSTKVSVEGVNVEKFNVEYFAKEKL-TKKEKKEANLFPEQ 125 (176)
T ss_dssp EECSCCCSSSSCCCSSCCCSSHHHHHH-HHHHHHHHHHHHHH
T ss_pred EeeeeeeecccccccccCHHHhhhhhc-cccccchhhhcccc
Confidence 9999999988 43 5688888874333 34555666777543
No 10
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.63 E-value=3.4e-16 Score=109.54 Aligned_cols=63 Identities=30% Similarity=0.492 Sum_probs=51.7
Q ss_pred CcccccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecccccccccccchhhHhhhccccceeEeeeccce
Q 032739 1 MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAKKTAKKSRVKAFIKLVNQSHL 80 (135)
Q Consensus 1 m~k~~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ryP~kvt~~M~kkki~krskiK~FvK~vN~nHl 80 (135)
|. +++||+||++++|||||++||||+++|++ |+||+|.+.- .| + -|..|.+||
T Consensus 1 m~-~~~~Grvv~~~~Gr~~Gk~~vIv~iiD~~-------~vlV~g~~~~--~v----------~-------rk~kn~khl 53 (83)
T 3j21_5 1 MP-AIDVGRIAVVIAGRRAGQKVVVVDIIDKN-------FVLVTGAGLN--KV----------K-------RRRMNIKHI 53 (83)
T ss_dssp ---CCCTTEEEECSSSSSSCCCEEEEEECSSS-------CEEEECCTTT--TC----------C-------CEEESCSSC
T ss_pred CC-ccccCEEEEEeecCCCCCEEEEEEEcCCC-------EEEEECCccC--cc----------C-------CeEechHHE
Confidence 56 99999999999999999999999999998 9999995311 11 1 135799999
Q ss_pred eeeeeEeecc
Q 032739 81 MPTRYTLDVD 90 (135)
Q Consensus 81 ~pTry~vdi~ 90 (135)
.||.+.++++
T Consensus 54 ~lt~~~i~~~ 63 (83)
T 3j21_5 54 EPLPQKIDIP 63 (83)
T ss_dssp EEEEEECCCC
T ss_pred EEeeEEEECC
Confidence 9999998865
No 11
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_G
Probab=99.62 E-value=2.2e-16 Score=127.48 Aligned_cols=87 Identities=24% Similarity=0.525 Sum_probs=70.1
Q ss_pred cccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEee---ecccccccccccchhhHhhhccccceeEeeeccce
Q 032739 4 FLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAG---VAKYPVKVVRKDSAKKTAKKSRVKAFIKLVNQSHL 80 (135)
Q Consensus 4 ~~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaG---I~ryP~kvt~~M~kkki~krskiK~FvK~vN~nHl 80 (135)
.+.||+|||+|+|||+|+++|+|+++|+| .+||+| |+++|++ .+|++|+
T Consensus 74 si~pGtVlIil~Gr~~GKrvVfLkqL~sg-------llLVtGP~~lNgVplr---------------------R~~qk~v 125 (219)
T 3iz5_G 74 TITPGTVLILLAGRYMGKRVVFLKQLQSG-------LLLITGPFKINGVPIR---------------------RVNQAYV 125 (219)
T ss_dssp HCSCCSCEECSSSSSSCCEECEEEESSSS-------SEEECCCCSSSCCCCE---------------------EESSSSC
T ss_pred cccCCCEEEEeccccCCcEEEEEEecCCC-------eEEEcCCccccCCccE---------------------EechhhE
Confidence 47899999999999999999999999999 899999 5556644 6899999
Q ss_pred eeeeeEeecc-cc-cccCcccccChhHHHHHHHHHHHHHHH
Q 032739 81 MPTRYTLDVD-LK-DVINPDVLQTKDKKVTAAKETKRRLEE 119 (135)
Q Consensus 81 ~pTry~vdi~-~k-~~v~~~~~~d~~~k~~akke~k~~fee 119 (135)
++|...|||+ ++ +.+|+++|+....+ +.+++...+|.+
T Consensus 126 iaTstkIdIs~Vki~~l~D~YF~k~k~~-k~k~~E~eiF~~ 165 (219)
T 3iz5_G 126 IATSTKVDISKVNVQKFDDKYFAREKKT-RAKKTEGELFES 165 (219)
T ss_dssp EECSCCCSCSSCCCSSCCCSSHHHHHHH-HHHHHHHHHHHH
T ss_pred EecceEeecCccccccccHHHHhhhhhc-ccccchhhhhcc
Confidence 9999999987 43 56888888753333 345555667743
No 12
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=93.60 E-value=0.06 Score=39.16 Aligned_cols=40 Identities=20% Similarity=0.428 Sum_probs=34.8
Q ss_pred cccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeeccc
Q 032739 4 FLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKY 49 (135)
Q Consensus 4 ~~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ry 49 (135)
-++.|--|.|++|++.|+.+.|++.+.+.. .++|-||+..
T Consensus 15 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~------~V~VEGvN~~ 54 (115)
T 2zjr_R 15 HFKKGDTVIVLSGKHKGQTGKVLLALPRDQ------KVVVEGVNVI 54 (115)
T ss_dssp SSCTTSEEECCSSSSTTCEEEEEEEETTTT------EEEESSSCBC
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEECCCC------EEEEeCcEeE
Confidence 378899999999999999999999986542 8999998765
No 13
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=93.55 E-value=0.078 Score=37.87 Aligned_cols=39 Identities=18% Similarity=0.503 Sum_probs=34.0
Q ss_pred ccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecccc
Q 032739 5 LKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYP 50 (135)
Q Consensus 5 ~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ryP 50 (135)
++.|--|+|++|++.|+...|++.+.++ .++|-||+..-
T Consensus 4 IkkGD~V~Vi~GkdKGk~GkV~~V~~~~-------~ViVeGvN~~k 42 (102)
T 3r8s_U 4 IRRDDEVIVLTGKDKGKRGKVKNVLSSG-------KVIVEGINLVK 42 (102)
T ss_dssp SCSSCEEEECSSSSTTCEEEEEEEETTT-------EEEETTCSEEE
T ss_pred ccCCCEEEEeEcCCCCeeeEEEEEEeCC-------EEEEeCeEEEE
Confidence 6788888999999999999999998774 89999987543
No 14
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=93.10 E-value=0.091 Score=38.63 Aligned_cols=39 Identities=15% Similarity=0.289 Sum_probs=33.0
Q ss_pred ccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeeccc
Q 032739 5 LKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKY 49 (135)
Q Consensus 5 ~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ry 49 (135)
++.|--|+|++|++.|+.+.|++.+.+.. .++|-||+..
T Consensus 46 IkkGD~V~Vi~GkdKGk~GkV~~V~~k~~------~V~VEgvn~~ 84 (121)
T 3j21_U 46 VRVGDKVRIMRGDYKGHEGKVVEVDLKRY------RIYVEGATLR 84 (121)
T ss_dssp CCSSSEEEECSSSCSSEEEEEEEEETTTT------EEEETTCEEE
T ss_pred cccCCEEEEeecCCCCcEeEEEEEEecCC------EEEEeCeEEE
Confidence 56788899999999999999999986542 8999998643
No 15
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=92.67 E-value=0.12 Score=37.99 Aligned_cols=38 Identities=24% Similarity=0.320 Sum_probs=33.1
Q ss_pred ccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecc
Q 032739 5 LKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAK 48 (135)
Q Consensus 5 ~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~r 48 (135)
++.|-.|+|++|.+.|+.+-|++.+.+.. .++|-||+.
T Consensus 43 IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~------~V~VEgvn~ 80 (120)
T 1vq8_T 43 VNAGDTVEVLRGDFAGEEGEVINVDLDKA------VIHVEDVTL 80 (120)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEETTTT------EEEETTCEE
T ss_pred ccCCCEEEEEecCCCCCEEEEEEEECCCC------EEEEeCeEe
Confidence 67899999999999999999999986542 799999865
No 16
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=92.53 E-value=0.11 Score=39.36 Aligned_cols=38 Identities=13% Similarity=0.453 Sum_probs=33.5
Q ss_pred ccCcEEEEEeccccCCce-EEEEEecCCCCCCCCcceeEEeeecc
Q 032739 5 LKPNKAVVLLQGRYAGRK-AVIIRSFDDGTRDRPYGHCLVAGVAK 48 (135)
Q Consensus 5 ~kpgkVvivL~GryAGkK-aVivk~~d~gt~~~~y~~~lVaGI~r 48 (135)
++.|-.|+|++|.+.|+. +.|++.+.+.. .++|-||+.
T Consensus 49 IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~~------~V~VEgvn~ 87 (145)
T 2zkr_t 49 IRKDDEVQVVRGHYKGQQIGKVVQVYRKKY------VIYIERVQR 87 (145)
T ss_dssp CCTTCEEEECSSTTTTCCSEEEEEEETTTT------EEEETTCEE
T ss_pred cCCCCEEEEeecCCCCcceeEEEEEECCCC------EEEEeeeEe
Confidence 778999999999999999 99999986542 899999876
No 17
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=92.51 E-value=0.09 Score=38.04 Aligned_cols=40 Identities=23% Similarity=0.401 Sum_probs=34.3
Q ss_pred cccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeeccc
Q 032739 4 FLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKY 49 (135)
Q Consensus 4 ~~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ry 49 (135)
-++.|--|+|++|++.|+.+-|++.+.+.. .++|-||+..
T Consensus 6 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~------~ViVEGvN~~ 45 (110)
T 3v2d_Y 6 HVKKGDTVLVASGKYKGRVGKVKEVLPKKY------AVIVEGVNIV 45 (110)
T ss_dssp SCCTTSEEEECSSTTTTCEEEEEEEEGGGT------EEEETTSSEE
T ss_pred ccCCCCEEEEeEcCCCCeEeEEEEEECCCC------EEEEeCEEEE
Confidence 367888899999999999999999987642 8999998764
No 18
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=90.78 E-value=0.21 Score=37.07 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=33.2
Q ss_pred ccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeeccc
Q 032739 5 LKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKY 49 (135)
Q Consensus 5 ~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ry 49 (135)
++-|--|+|++|.|.|+.+-|++.+.+.. .++|-||+..
T Consensus 50 IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~------~V~VEgVn~~ 88 (127)
T 3u5e_Y 50 IRRDDEVLVVRGSKKGQEGKISSVYRLKF------AVQVDKVTKE 88 (127)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEEGGGT------EEEEETCEEE
T ss_pred ccCCCEEEEeecCCCCccceEEEEECCCC------EEEEeCeEEE
Confidence 56788899999999999999999987542 8999998753
No 19
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=90.67 E-value=0.31 Score=34.37 Aligned_cols=35 Identities=20% Similarity=0.461 Sum_probs=29.4
Q ss_pred EEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeeccc
Q 032739 9 KAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKY 49 (135)
Q Consensus 9 kVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ry 49 (135)
--|+|++|++.|+..-|++.+.+.. .++|-|++..
T Consensus 2 D~V~Vi~GkdKGk~GkV~~V~~~~~------~ViVeGvN~~ 36 (96)
T 2ftc_N 2 DTVEILEGKDAGKQGKVVQVIRQRN------WVVVGGLNTH 36 (96)
T ss_pred CEEEEeEcCCCCcEEEEEEEECCCC------EEEEeCCEEE
Confidence 3578999999999999999986542 8999998765
No 20
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=90.60 E-value=0.25 Score=37.68 Aligned_cols=39 Identities=15% Similarity=0.407 Sum_probs=33.4
Q ss_pred ccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeeccc
Q 032739 5 LKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKY 49 (135)
Q Consensus 5 ~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ry 49 (135)
++.|--|+|++|.|.|+.+-|++.+.+.. .++|-||+..
T Consensus 49 IkKGD~V~Vi~GkdKGk~GkVl~V~~kk~------~V~VEGVN~~ 87 (150)
T 3iz5_Y 49 IRKDDEVQVVRGSYKGREGKVVQVYRRRW------VIHVERITRE 87 (150)
T ss_dssp CCSSSEEEECSSTTTTCEEEEEEEETTTT------EEEETTCEEE
T ss_pred cCCCCEEEEeecCCCCccceEEEEEcCCC------EEEEeCcEEE
Confidence 56788899999999999999999988642 8999998743
No 21
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=90.53 E-value=0.28 Score=36.78 Aligned_cols=39 Identities=15% Similarity=0.420 Sum_probs=33.4
Q ss_pred ccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeeccc
Q 032739 5 LKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKY 49 (135)
Q Consensus 5 ~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ry 49 (135)
++-|--|+|++|.|.|+.+-|++.+.+.. .++|-||+..
T Consensus 49 IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~------~V~VEgVn~~ 87 (135)
T 4a17_S 49 VRKDDEVLIVRGKFKGNKGKVTQVYRKKW------AIHVEKISKN 87 (135)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEETTTT------EEEETTCCEE
T ss_pred ccCCCEEEEeecCCCCceeeEEEEEcCCC------EEEEeCeEEE
Confidence 56788899999999999999999987642 8999998753
No 22
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=88.40 E-value=0.45 Score=31.99 Aligned_cols=31 Identities=26% Similarity=0.506 Sum_probs=28.1
Q ss_pred cccccCcEEEEEeccccCCceEEEEEecCCC
Q 032739 2 VKFLKPNKAVVLLQGRYAGRKAVIIRSFDDG 32 (135)
Q Consensus 2 ~k~~kpgkVvivL~GryAGkKaVivk~~d~g 32 (135)
-|.+++|-=|-|++|||+|--..||+.-|+-
T Consensus 15 rK~F~~GDHVkVi~G~~~getGlVV~v~~d~ 45 (69)
T 2do3_A 15 RKYFKMGDHVKVIAGRFEGDTGLIVRVEENF 45 (69)
T ss_dssp CSSCCTTCEEEESSSTTTTCEEEEEEECSSC
T ss_pred eeeccCCCeEEEeccEEcCceEEEEEEeCCE
Confidence 4789999999999999999999999987763
No 23
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=84.04 E-value=0.15 Score=40.24 Aligned_cols=40 Identities=13% Similarity=0.225 Sum_probs=34.4
Q ss_pred ccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecccc
Q 032739 5 LKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYP 50 (135)
Q Consensus 5 ~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ryP 50 (135)
++.|--|+|++|++.|+...|++.+.+.. .++|-||+..-
T Consensus 69 IkKGD~V~VIaGkDKGK~GkVl~V~~k~~------rViVEGVN~vk 108 (191)
T 3bbo_W 69 VKVGDTVKVISGGEKGKIGEISKIHKHNS------TVIIKDLNFKT 108 (191)
T ss_dssp SCCSSCEEECSSSSTTCCCSCCCCCSSSC------CCCCSSCCCCC
T ss_pred eecCCEEEEeecCCCCceEEEEEEECCCC------EEEEeCCEEEE
Confidence 77899999999999999999999986542 79999987654
No 24
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=64.19 E-value=7.7 Score=28.06 Aligned_cols=26 Identities=23% Similarity=0.529 Sum_probs=21.6
Q ss_pred cCcEEEEEeccccCCceEEEEEecCC
Q 032739 6 KPNKAVVLLQGRYAGRKAVIIRSFDD 31 (135)
Q Consensus 6 kpgkVvivL~GryAGkKaVivk~~d~ 31 (135)
++|.-|+|+.|.|+|..|.++..-.+
T Consensus 72 ~~g~~V~Iv~G~~rG~~g~L~~id~~ 97 (127)
T 2ckk_A 72 APGKRILVLNGGYRGNEGTLESINEK 97 (127)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEEGG
T ss_pred CCCCEEEEEecccCCcEEEEEEEeCC
Confidence 46888889999999999999976433
No 25
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=48.98 E-value=19 Score=21.90 Aligned_cols=27 Identities=11% Similarity=0.258 Sum_probs=23.9
Q ss_pred ccCcEEEEEeccccCCceEEEEEecCC
Q 032739 5 LKPNKAVVLLQGRYAGRKAVIIRSFDD 31 (135)
Q Consensus 5 ~kpgkVvivL~GryAGkKaVivk~~d~ 31 (135)
+++|--|-|++|-++|-.+.|.+...+
T Consensus 5 ~~~Gd~V~V~~Gpf~g~~g~v~~v~~~ 31 (58)
T 1nz9_A 5 FREGDQVRVVSGPFADFTGTVTEINPE 31 (58)
T ss_dssp CCTTCEEEECSGGGTTCEEEEEEEETT
T ss_pred cCCCCEEEEeecCCCCcEEEEEEEcCC
Confidence 578999999999999999999987554
No 26
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=41.78 E-value=18 Score=28.74 Aligned_cols=24 Identities=13% Similarity=0.320 Sum_probs=21.4
Q ss_pred ccCcEEEEEeccccCCceEEEEEe
Q 032739 5 LKPNKAVVLLQGRYAGRKAVIIRS 28 (135)
Q Consensus 5 ~kpgkVvivL~GryAGkKaVivk~ 28 (135)
+..|.+|+|..|+.+|+-++|...
T Consensus 139 f~~G~l~mvtgG~n~GriG~I~~i 162 (213)
T 3kbg_A 139 MQPGNKAYITAGSHVNQTGTISKI 162 (213)
T ss_dssp CSTTCEEEECSSTTTTCEEEEEEE
T ss_pred cCCCCEEEEECCCcceEEEEEEEE
Confidence 467999999999999999998865
No 27
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=39.26 E-value=20 Score=28.93 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.3
Q ss_pred ccCcEEEEEeccccCCceEEEEEe
Q 032739 5 LKPNKAVVLLQGRYAGRKAVIIRS 28 (135)
Q Consensus 5 ~kpgkVvivL~GryAGkKaVivk~ 28 (135)
+..|.+|+|..|+.+|+-++|...
T Consensus 179 f~~G~l~mvtgG~n~GriG~I~~i 202 (243)
T 3j20_E 179 FEKGAYVFVTQGKNVARKGRIVEI 202 (243)
T ss_dssp CCTTCEEEECSSSSTTCEEEEEEC
T ss_pred ccCCCEEEEECCccceEEEEEEEE
Confidence 467999999999999999998864
No 28
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=37.78 E-value=44 Score=23.87 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=25.7
Q ss_pred cccCcEEEEEeccccCCceEEEEEecCCC
Q 032739 4 FLKPNKAVVLLQGRYAGRKAVIIRSFDDG 32 (135)
Q Consensus 4 ~~kpgkVvivL~GryAGkKaVivk~~d~g 32 (135)
-+++|-.|-|..|-|+|-.|+|.+...+.
T Consensus 91 ~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k 119 (152)
T 3p8b_B 91 GLEPGDLVEVIAGPFKGQKAKVVKIDESK 119 (152)
T ss_dssp TCCTTCEEEECSSTTTTCEEEEEEEETTT
T ss_pred cCCCCCEEEEeeecCCCCEEEEEEEeCCC
Confidence 36789999999999999999999887665
No 29
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=35.49 E-value=25 Score=28.69 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=21.3
Q ss_pred ccCcEEEEEeccccCCceEEEEE
Q 032739 5 LKPNKAVVLLQGRYAGRKAVIIR 27 (135)
Q Consensus 5 ~kpgkVvivL~GryAGkKaVivk 27 (135)
+..|.+|+|..|+.+|+-++|..
T Consensus 177 fe~G~l~mvtgG~n~GriG~I~~ 199 (260)
T 2xzm_W 177 LESGNVCYIQQGNNIGRVGIIQH 199 (260)
T ss_dssp CCSSCEEEECSSTTTTCEEEEEE
T ss_pred ecCCCEEEEECCccceeEEEEEE
Confidence 37899999999999999999996
No 30
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=34.95 E-value=26 Score=28.69 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.4
Q ss_pred ccCcEEEEEeccccCCceEEEEEe
Q 032739 5 LKPNKAVVLLQGRYAGRKAVIIRS 28 (135)
Q Consensus 5 ~kpgkVvivL~GryAGkKaVivk~ 28 (135)
+..|.+|+|..|+.+|+=++|...
T Consensus 175 fe~Gnl~mvtgG~n~GriG~I~~i 198 (265)
T 3iz6_D 175 FDVGNVVMVTGGRNTGRVGVIKNR 198 (265)
T ss_dssp CSTTCEEEECSSSSCSCEEEEEEE
T ss_pred ccCCCEEEEEcCCcceEEEEEEEE
Confidence 467999999999999999998865
No 31
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.84 E-value=1e+02 Score=20.34 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=22.5
Q ss_pred CcEEEEEeccccCCceEEEEEecCC
Q 032739 7 PNKAVVLLQGRYAGRKAVIIRSFDD 31 (135)
Q Consensus 7 pgkVvivL~GryAGkKaVivk~~d~ 31 (135)
.|+-|.|..|.|.|-..+|....|+
T Consensus 20 iGktV~I~kGpyKG~~GiVkd~t~~ 44 (71)
T 2e70_A 20 IGQTVRISQGPYKGYIGVVKDATES 44 (71)
T ss_dssp TTSEEEECSSTTTTCEEEEEEECSS
T ss_pred CCCEEEEeccCCCCeEEEEEECCCC
Confidence 5889999999999999999888775
No 32
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.29 E-value=42 Score=20.83 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=23.3
Q ss_pred ccCcEEEEEeccccCCceEEEEEecC
Q 032739 5 LKPNKAVVLLQGRYAGRKAVIIRSFD 30 (135)
Q Consensus 5 ~kpgkVvivL~GryAGkKaVivk~~d 30 (135)
+.||-.|-|+.|=++|-.++|...-.
T Consensus 8 f~~GD~V~V~~Gpf~g~~G~V~evd~ 33 (59)
T 2e6z_A 8 FQPGDNVEVCEGELINLQGKILSVDG 33 (59)
T ss_dssp CCTTSEEEECSSTTTTCEEEECCCBT
T ss_pred CCCCCEEEEeecCCCCCEEEEEEEeC
Confidence 68999999999999999999987644
No 33
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=26.50 E-value=88 Score=22.34 Aligned_cols=29 Identities=24% Similarity=0.501 Sum_probs=22.3
Q ss_pred cccCcEEEEEeccc----cCCceEEEEEecCCC
Q 032739 4 FLKPNKAVVLLQGR----YAGRKAVIIRSFDDG 32 (135)
Q Consensus 4 ~~kpgkVvivL~Gr----yAGkKaVivk~~d~g 32 (135)
-+.||-+|=+..-+ |-++|+||...++++
T Consensus 14 Wl~~~I~Vrii~k~~~~g~y~~KgvV~~V~~~~ 46 (127)
T 2ckk_A 14 WLQPEIIVKIITKKLGEKYHKKKAIVKEVIDKY 46 (127)
T ss_dssp CCCTTBEEEECCSTTCGGGTTCEEEEEEEETTT
T ss_pred cccCCeEEEEEEccCCCcccCceEEEEEecCCC
Confidence 46678777776522 889999999998776
No 34
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=24.40 E-value=71 Score=23.31 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=24.4
Q ss_pred cccCcEEEEEeccccCCceEEEEEecCC
Q 032739 4 FLKPNKAVVLLQGRYAGRKAVIIRSFDD 31 (135)
Q Consensus 4 ~~kpgkVvivL~GryAGkKaVivk~~d~ 31 (135)
-+.+|-.|-|+.|-++|-.++|.+..++
T Consensus 127 ~~~~Gd~V~V~~GPf~g~~G~v~~v~~~ 154 (181)
T 2jvv_A 127 LFEPGEMVRVNDGPFADFNGVVEEVDYE 154 (181)
T ss_dssp CCCTTEEEEECSSTTTTEEEEEEEEETT
T ss_pred cCCCCCEEEEeccCCCCcEEEEEEEeCC
Confidence 3578999999999999999999987544
Done!