Query 032740
Match_columns 135
No_of_seqs 111 out of 985
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 08:15:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032740.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032740hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oyy_A EF-P, elongation factor 100.0 1.2E-59 4.2E-64 368.7 17.5 132 3-135 57-190 (191)
2 1ueb_A EF-P, TT0860, elongatio 100.0 2.2E-59 7.7E-64 365.2 18.9 131 3-134 54-184 (184)
3 3tre_A EF-P, elongation factor 100.0 2E-60 6.9E-65 373.1 9.9 133 3-135 59-191 (191)
4 1yby_A Translation elongation 100.0 3.5E-59 1.2E-63 371.9 16.7 132 3-134 84-215 (215)
5 3a5z_B EF-P, elongation factor 100.0 7.4E-61 2.5E-65 375.6 6.6 133 3-135 59-191 (191)
6 1bkb_A Translation initiation 99.9 4.8E-22 1.6E-26 147.7 8.7 71 3-73 62-133 (136)
7 1iz6_A Initiation factor 5A; S 99.8 7.4E-21 2.5E-25 141.9 9.0 68 3-70 60-129 (138)
8 2eif_A IF-5A, protein (eukaryo 99.8 1.5E-19 5E-24 134.5 9.5 67 3-72 64-130 (136)
9 3cpf_A Eukaryotic translation 99.8 2.3E-20 7.8E-25 139.2 4.4 64 3-66 60-126 (138)
10 1x6o_A Eukaryotic initiation f 99.7 6.3E-18 2.2E-22 130.7 5.7 64 3-66 84-158 (174)
11 3er0_A Eukaryotic translation 99.7 4E-18 1.4E-22 131.1 0.2 64 3-66 84-150 (167)
12 3hks_A EIF-5A-2, eukaryotic tr 99.6 5E-16 1.7E-20 119.4 5.8 64 3-66 82-150 (167)
13 1dj7_B Ferredoxin thioredoxin 62.7 2.3 7.8E-05 28.4 0.8 28 53-80 26-57 (75)
14 1jt8_A EIF-1A, probable transl 58.4 13 0.00045 25.7 4.2 49 70-126 10-70 (102)
15 1yfb_A Transition state regula 57.4 14 0.00049 22.9 3.9 34 35-70 19-52 (59)
16 2jn4_A Hypothetical protein FI 54.6 37 0.0013 23.1 5.8 52 56-114 20-72 (87)
17 2dgy_A MGC11102 protein; EIF-1 49.9 41 0.0014 23.4 5.7 29 98-126 29-65 (111)
18 3kbg_A 30S ribosomal protein S 46.7 32 0.0011 26.8 5.1 34 99-132 101-135 (213)
19 4h87_A Kanadaptin; FHA domain 45.0 9 0.00031 27.0 1.6 34 100-133 94-129 (130)
20 3iz6_D 40S ribosomal protein S 44.0 38 0.0013 27.3 5.3 47 80-132 124-171 (265)
21 2xzm_W 40S ribosomal protein S 42.8 30 0.001 27.8 4.5 36 96-131 136-172 (260)
22 1d7q_A Translation initiation 41.2 86 0.003 22.8 6.5 43 77-127 32-82 (143)
23 2ki8_A Tungsten formylmethanof 40.5 17 0.00057 25.9 2.5 21 114-134 66-86 (146)
24 1mhx_A Immunoglobulin-binding 39.9 11 0.00037 24.0 1.2 15 112-126 13-27 (65)
25 3j20_E 30S ribosomal protein S 39.8 16 0.00056 29.0 2.5 36 97-132 136-175 (243)
26 1h95_A CSD, Y-box binding prot 37.6 50 0.0017 21.2 4.3 44 22-65 15-64 (79)
27 1khi_A HEX1; membrane sealing, 35.4 1.1E+02 0.0038 23.1 6.4 60 7-68 96-162 (176)
28 2jv2_A Putative uncharacterize 35.2 36 0.0012 22.5 3.3 26 54-88 42-67 (83)
29 1mvf_D MAZE protein, PEMI-like 34.2 40 0.0014 21.4 3.4 31 38-70 13-43 (82)
30 3u5c_E RP5, S7, YS6, 40S ribos 33.4 48 0.0017 26.6 4.3 35 98-132 136-171 (261)
31 3off_A LDLR chaperone BOCA; ME 32.6 40 0.0014 22.9 3.2 49 3-69 39-87 (90)
32 2cqa_A RUVB-like 2; TIP48, TIP 29.8 29 0.001 23.8 2.2 17 114-130 62-78 (95)
33 2l66_A SSO7C4, transcriptional 29.0 18 0.00063 21.4 0.9 31 36-68 10-40 (53)
34 3a0j_A Cold shock protein; OB- 28.9 1.1E+02 0.0037 19.2 5.3 45 23-67 9-54 (73)
35 1wlf_A PEX1, peroxisome biogen 28.4 62 0.0021 23.9 4.0 37 66-111 137-175 (179)
36 3ofh_A LDLR chaperone MESD; mo 28.2 29 0.00099 23.6 1.9 49 3-69 38-86 (89)
37 1g6p_A Cold shock protein TMCS 28.1 81 0.0028 19.4 3.9 45 23-67 8-53 (66)
38 3e0j_A DNA polymerase subunit 27.4 25 0.00087 30.3 1.8 22 108-129 432-453 (476)
39 3fm8_A Kinesin-like protein KI 26.6 32 0.0011 24.1 2.0 24 101-124 91-114 (124)
40 1i96_V Translation initiation 25.8 17 0.0006 24.4 0.4 14 113-126 25-38 (89)
41 2do3_A Transcription elongatio 25.3 25 0.00086 22.8 1.1 21 105-125 3-28 (69)
42 4div_S ORF46; distal tail prot 25.1 52 0.0018 25.1 3.1 27 101-128 180-207 (253)
43 3zv0_C H/ACA ribonucleoprotein 23.8 66 0.0023 24.6 3.4 30 105-134 90-125 (195)
44 2ln7_A LPXTG-SITE transpeptida 22.4 44 0.0015 23.7 2.1 19 115-133 76-94 (147)
45 3gld_A Pilin; all-beta, cell a 22.0 63 0.0022 26.2 3.1 37 55-91 215-252 (295)
46 2k75_A Uncharacterized protein 21.9 52 0.0018 22.1 2.2 18 115-132 60-78 (106)
47 1hyo_A Fumarylacetoacetate hyd 21.4 52 0.0018 27.8 2.6 26 98-126 372-397 (421)
48 2hr0_B Complement C3 alpha' ch 21.3 74 0.0025 28.9 3.7 53 68-124 41-100 (915)
49 1t2w_A Sortase; transpeptidase 20.4 48 0.0016 23.2 1.9 18 115-132 75-92 (145)
50 3gqs_A Adenylate cyclase-like 20.1 81 0.0028 20.6 2.9 51 10-61 41-91 (106)
No 1
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.2e-59 Score=368.72 Aligned_cols=132 Identities=22% Similarity=0.370 Sum_probs=128.4
Q ss_pred cccccceEeeEEEEeeEEEEEccCCeEEEEeCCCceeEEeChhhhccccccccCCCE--EEEEEECCEEEEEeCCCeEEE
Q 032740 3 INAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMK--VWLQLYDGRALSGSIPKRVAC 80 (135)
Q Consensus 3 ~~~~~~~e~~~i~~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~~g~~~~fL~eg~~--v~v~~~~~~~i~v~lP~~V~l 80 (135)
||||++++.|+++++++||||.||+.|+||| +||||++||++.+|++.+||+|||+ |++++|+|+||+|+||++|+|
T Consensus 57 f~s~ekve~~~ver~~~qylY~dgd~~~FMD-etyEq~~l~~~~lgd~~~~L~eg~~~~v~v~~~~~~~i~v~lP~~V~l 135 (191)
T 3oyy_A 57 FKADDKLEPIILDRKEVTYSYFADPLYVFMD-SEFNQYEIEKDDLEGVLTFIEDGMTDICEAVFYNDKVISVELPTTIVR 135 (191)
T ss_dssp EETTCEEEECCCEEEEEEEEEECSSSEEEEE-TTCCEEEECGGGCTTTGGGCCTTCCCCEEEEEETTEEEEEECCSEEEE
T ss_pred eCCCCEEEeeeEEEEEEEEEEecCCEEEEEe-cChhheeCChHHhhhHHhhCcCCCEeEEEEEEECCEEEEEECCCEEEE
Confidence 8999999999999999999999999999999 9999999999999999999999999 999999999999999999999
Q ss_pred EEEEeCCCCCCccCCCCceeEEEecCcEEEcccceecCCEEEEeCCCCeeEeecC
Q 032740 81 TIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK 135 (135)
Q Consensus 81 ~V~et~p~~kGdTat~~~K~A~LetG~~i~VP~FI~~Gd~I~VdT~~g~Y~~R~k 135 (135)
+|++|+|++||||||+++|||+||||++|+||+||++||+|+||||||+|++|||
T Consensus 136 ~V~~tep~~kGdta~~~~KpA~letG~~v~VP~fi~~Gd~I~VdT~~g~Y~~R~k 190 (191)
T 3oyy_A 136 QIAYTEPAVRGDTSGKVMKTARLNNGAELQVSAFCEIGDSIEIDTRTGEYKSRVK 190 (191)
T ss_dssp EEEEECCCCSCCCC--CEEEEEETTSCEEEEETTCCTTCEEEEETTTTEEEEEC-
T ss_pred EEEEcCCCccccccCCCCceEEEeCCCEEEeCCeeeCCCEEEEECCCCeEhhhcc
Confidence 9999999999999999999999999999999999999999999999999999996
No 2
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V
Probab=100.00 E-value=2.2e-59 Score=365.20 Aligned_cols=131 Identities=28% Similarity=0.505 Sum_probs=130.2
Q ss_pred cccccceEeeEEEEeeEEEEEccCCeEEEEeCCCceeEEeChhhhccccccccCCCEEEEEEECCEEEEEeCCCeEEEEE
Q 032740 3 INAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTI 82 (135)
Q Consensus 3 ~~~~~~~e~~~i~~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~~g~~~~fL~eg~~v~v~~~~~~~i~v~lP~~V~l~V 82 (135)
||||++++.|++++++|||||.||+.|+|||+|||||++||++.+|++ +||+|||+|++++|+|+||+|+||++|+|+|
T Consensus 54 f~s~~kve~~~ver~~~qylY~dgd~~~FMD~etyeq~~l~~~~lgd~-~~L~eg~~v~v~~~~g~~i~v~lP~~V~l~V 132 (184)
T 1ueb_A 54 FNSGEKLEDIYVETRELQYLYPEGEEMVFMDLETYEQFAVPRSRVVGA-EFFKEGMTALGDMYEGQPIKVTPPTVVELKV 132 (184)
T ss_dssp EETTCEEEECCEEEEEEEEEEEETTEEEEEETTTCCEEEEEGGGBTTG-GGCCTTCEEEEEEETTEEEEEECCSEEEEEE
T ss_pred ECCCCEEEeeeEEEEEEEEEEeCCCEEEEeeCCCceeEEcCHHHcChh-hhcCCCCEEEEEEECCEEEEEECCCEEEEEE
Confidence 899999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred EEeCCCCCCccCCCCceeEEEecCcEEEcccceecCCEEEEeCCCCeeEeec
Q 032740 83 KEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 134 (135)
Q Consensus 83 ~et~p~~kGdTat~~~K~A~LetG~~i~VP~FI~~Gd~I~VdT~~g~Y~~R~ 134 (135)
++|+|++|||||++++|||+||||++|+||+||++||+|+||||+|+|++||
T Consensus 133 ~~tep~~kGdta~~~~KpA~letG~~v~VP~fi~~Gd~I~vdT~~g~Y~~R~ 184 (184)
T 1ueb_A 133 VDTPPGVRGDTVSGGSKPATLETGAVVQVPLFVEPGEVIKVDTRTGEYVGRA 184 (184)
T ss_dssp EECCSSSCCSSSSCSEEEEEETTSCEEEEETTCCTTCEEEEETTTTEEEEEC
T ss_pred EEcCCCCcccccCCCCccEEEcCCCEEEeCCcCcCCCEEEEECCCCeEeccC
Confidence 9999999999999999999999999999999999999999999999999997
No 3
>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii}
Probab=100.00 E-value=2e-60 Score=373.07 Aligned_cols=133 Identities=26% Similarity=0.384 Sum_probs=75.6
Q ss_pred cccccceEeeEEEEeeEEEEEccCCeEEEEeCCCceeEEeChhhhccccccccCCCEEEEEEECCEEEEEeCCCeEEEEE
Q 032740 3 INAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTI 82 (135)
Q Consensus 3 ~~~~~~~e~~~i~~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~~g~~~~fL~eg~~v~v~~~~~~~i~v~lP~~V~l~V 82 (135)
||||++++.|+++++++||||.||+.|+|||++||||++||++.+|++.+||+|||+|++++|+|+||+|+||++|+|+|
T Consensus 59 f~s~ekve~~~ver~~~qylY~dgd~~~FMD~etyEq~~l~~~~lgd~~~~L~eg~~v~v~~~~~~~i~v~lP~~V~l~V 138 (191)
T 3tre_A 59 FKSGETLPAADVVEVEMQYLYNDGEFWHFMTSENYEQHAASKEAVAEAKQWLKEEALCMVTMWNGVPLSVEPPNFVELKI 138 (191)
T ss_dssp EETTCEECBCCEEEEEEEEEEECSSCEEEEESSSCCEEEECHHHHGGGGGGCCTTCEEEEEEETTEEEEEECCSCC----
T ss_pred eCCCCEEEeceEEEEEEEEEEEcCCcEEEccCCchHheecchhHhhhHHhhCCCCCEEEEEEECCEEEEEECCCEEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCccCCCCceeEEEecCcEEEcccceecCCEEEEeCCCCeeEeecC
Q 032740 83 KEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK 135 (135)
Q Consensus 83 ~et~p~~kGdTat~~~K~A~LetG~~i~VP~FI~~Gd~I~VdT~~g~Y~~R~k 135 (135)
++|+|++|||||++++|||+||||++|+||+||++||+|+||||||+|++|||
T Consensus 139 ~~tep~~kGdta~~~~KpA~letG~~v~VP~fi~~Gd~I~VdT~~g~Y~~R~k 191 (191)
T 3tre_A 139 TETEPGVRGDTATGGTKRAKLETGAVVRVPLFLNEGEIIKVDTRRGEYVSRAK 191 (191)
T ss_dssp -----------------------------------------------------
T ss_pred EEcCCCCcccccCCCcCeEEEeCCCEEEeCCeEcCCCEEEEECCCCeEecccC
Confidence 99999999999999999999999999999999999999999999999999996
No 4
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=100.00 E-value=3.5e-59 Score=371.91 Aligned_cols=132 Identities=25% Similarity=0.408 Sum_probs=124.2
Q ss_pred cccccceEeeEEEEeeEEEEEccCCeEEEEeCCCceeEEeChhhhccccccccCCCEEEEEEECCEEEEEeCCCeEEEEE
Q 032740 3 INAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTI 82 (135)
Q Consensus 3 ~~~~~~~e~~~i~~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~~g~~~~fL~eg~~v~v~~~~~~~i~v~lP~~V~l~V 82 (135)
||+|++++.|++++++|||||.||+.|+|||+|||||++||++.+||+.+||+|||+|++++|+|+||+|+||++|+|+|
T Consensus 84 f~s~ekve~a~verr~~QylY~Dgd~y~FMD~ETyEQi~l~~~~lgd~~~fLkEg~~v~v~~~~g~~i~velP~~V~l~V 163 (215)
T 1yby_A 84 FNPTDKMPKAHIERKDMQYLYNDGDLYYFMDTETFEQLPLGKDKIGDALKFVKENEIVKVLSHKGNVFGIEPPNFVELEV 163 (215)
T ss_dssp ECTTCEECBCCCEEEEEEEEEEETTEEEEECTTTCCEEEEEHHHHTTTTTTCCTTCEEEEEEETTEEEEEECCSEEEEEE
T ss_pred ECCCCEEecceEEEEEEEEEEeCCCEEEEccCCCCeeEEecHHHhhhHHhhCCCCCEEEEEEECCEEEEEECCCEEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCccCCCCceeEEEecCcEEEcccceecCCEEEEeCCCCeeEeec
Q 032740 83 KEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 134 (135)
Q Consensus 83 ~et~p~~kGdTat~~~K~A~LetG~~i~VP~FI~~Gd~I~VdT~~g~Y~~R~ 134 (135)
++|+|++|||||++++|||+||||++|+||+||++||+|+||||||+|++||
T Consensus 164 ~eteP~vkGdTa~~~~KpA~leTG~~v~VP~FI~~Gd~I~VdT~~g~Y~~R~ 215 (215)
T 1yby_A 164 TDTEPGFKGDTATGATKPAIVETGASIKVPLFVNKGDIIRIDTRTGEYMERV 215 (215)
T ss_dssp EEC-------CCSCCEEEEEETTSCEEEEETTCCTTCEEEEETTTTEEEEEC
T ss_pred EEcCCCccccccCCCCccEEEeCCcEEEeCCcEeCCCEEEEECCCCeEeccC
Confidence 9999999999999999999999999999999999999999999999999997
No 5
>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli}
Probab=100.00 E-value=7.4e-61 Score=375.63 Aligned_cols=133 Identities=28% Similarity=0.444 Sum_probs=80.6
Q ss_pred cccccceEeeEEEEeeEEEEEccCCeEEEEeCCCceeEEeChhhhccccccccCCCEEEEEEECCEEEEEeCCCeEEEEE
Q 032740 3 INAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTI 82 (135)
Q Consensus 3 ~~~~~~~e~~~i~~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~~g~~~~fL~eg~~v~v~~~~~~~i~v~lP~~V~l~V 82 (135)
||||++++.|++++++|||||.||+.|+|||+|||||++||++.+|++.+||+|||+|++++|+|+||+|+||++|+|+|
T Consensus 59 f~s~~kve~~~ver~~~qylY~dgd~~~FMD~etyeQ~~l~~~~lgd~~~~l~e~~~v~v~~~~g~~i~v~lP~~V~l~V 138 (191)
T 3a5z_B 59 FKSTDSAEGADVVDMNLTYLYNDGEFWHFMNNETFEQLSADAKAIGDNAKWLLDQAECIVTLWNGQPISVTPPNFVELEI 138 (191)
T ss_dssp EETTCEEEECCEEEECCEEEEECSSCEEEECTTTCCEEEECHHHHCTTTTTCCSSEECEEEEETTEEEEEECCSCCCCCC
T ss_pred ECCCCEEEeeEEEEEEEEEEEeCCCEEEEeeCCCCeEEEccHHHhhhHHhhcCCCCEEEEEEECCEEEEEECCCEEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCccCCCCceeEEEecCcEEEcccceecCCEEEEeCCCCeeEeecC
Q 032740 83 KEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK 135 (135)
Q Consensus 83 ~et~p~~kGdTat~~~K~A~LetG~~i~VP~FI~~Gd~I~VdT~~g~Y~~R~k 135 (135)
++|+|++|||||++++|||+||||++|+||+||++||+|+||||+|+|++|||
T Consensus 139 ~~tep~~kGdta~~~~KpA~letG~~v~VP~fi~~Gd~I~VdT~~g~Y~~R~~ 191 (191)
T 3a5z_B 139 VDTDPGLKGDTAGTGGKPATLSTGAVVKVPLFVQIGEVIKVDTRSGEYVSRVK 191 (191)
T ss_dssp C----------------------------------------------------
T ss_pred EEcCCCCcccccCCCCccEEEeCCCEEEeCCcEeCCCEEEEECCCCeEeeccC
Confidence 99999999999999999999999999999999999999999999999999996
No 6
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=99.86 E-value=4.8e-22 Score=147.74 Aligned_cols=71 Identities=15% Similarity=0.097 Sum_probs=68.2
Q ss_pred cccccceEeeEEEEeeEEEEEccCCeEEEEeCCCceeEEeChhh-hccccccccCCCEEEEEEECCEEEEEe
Q 032740 3 INAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDV-FGKAGAYLQEGMKVWLQLYDGRALSGS 73 (135)
Q Consensus 3 ~~~~~~~e~~~i~~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~-~g~~~~fL~eg~~v~v~~~~~~~i~v~ 73 (135)
|+||++++.|+++++++||||.||+.|+|||++||||++|+++. +|++.+||+|||.|++++|+|++.-+.
T Consensus 62 f~s~~kve~~~ve~~~~qylY~dg~~~~fMD~etyeq~~l~~~~~~gd~~~~l~e~~~v~v~~~~g~~~~~~ 133 (136)
T 1bkb_A 62 LPVDAQVEVPIIEKFTAQILSVSGDVIQLMDMRDYKTIEVPMKYVEEEAKGRLAPGAEVEVWQILDRYKIIR 133 (136)
T ss_dssp EETTSEEEECCCEEEEEEEEEECSSEEEEEETTTCCEEEEEGGGBCHHHHTTCCTTCEEEEEEETTEEEEEE
T ss_pred EcCCCEeeeceEEEEEEEEEEecCCEEEEEeCCCCeEEEeccccchhHHHhhCCCCCEEEEEEECCEEEEEE
Confidence 89999999999999999999999999999999999999999999 999999999999999999999887543
No 7
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=99.84 E-value=7.4e-21 Score=141.88 Aligned_cols=68 Identities=22% Similarity=0.199 Sum_probs=66.0
Q ss_pred cccccceEeeEEEEeeEEEEEccCCeEEEEeCCCceeEEe--ChhhhccccccccCCCEEEEEEECCEEE
Q 032740 3 INAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEV--PLDVFGKAGAYLQEGMKVWLQLYDGRAL 70 (135)
Q Consensus 3 ~~~~~~~e~~~i~~~~~~ylY~dgd~~~FMd~etyeQ~~i--~~~~~g~~~~fL~eg~~v~v~~~~~~~i 70 (135)
||||++++.|+++++++||||.||+.|+|||++||||++| |++.+|++.+||+|||.|+|+++.|+..
T Consensus 60 f~s~~~ve~~~ve~~~~qylY~dg~~~~fMD~etyeq~~l~~~~~~lgd~~~~l~e~~~V~v~~~~G~~~ 129 (138)
T 1iz6_A 60 KPTSAEVDVPIIDKKTAQVIAITPDTVQIMDMETYETFEVPIDTGVADEIRDQLKEGINVEYWETLGRIK 129 (138)
T ss_dssp EETTSEEEEECCEEEEEEEEEECSSEEEEECTTTCCEEEEEHHHHBCGGGTTTCCTTCEEEEEEETTEEE
T ss_pred ecCCCEEeeceEEEEEEEEEEeCCCEEEEEeCCCCceEEeeCCHHHHHHHHHhCCCCCEEEEEEECCcEE
Confidence 8999999999999999999999999999999999999999 9999999999999999999999999865
No 8
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=99.80 E-value=1.5e-19 Score=134.48 Aligned_cols=67 Identities=16% Similarity=0.137 Sum_probs=63.9
Q ss_pred cccccceEeeEEEEeeEEEEEccCCeEEEEeCCCceeEEeChhhhccccccccCCCEEEEEEECCEEEEE
Q 032740 3 INAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSG 72 (135)
Q Consensus 3 ~~~~~~~e~~~i~~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~~g~~~~fL~eg~~v~v~~~~~~~i~v 72 (135)
|+||++++.|.++++++||||.||+.|+|||++||||++|+++ |++.+ |+|||.|++++|.|++.-+
T Consensus 64 f~s~~~ve~~~ve~~~~qyly~dg~~~~fMD~etyeq~~l~~~--gd~~~-l~e~~~v~v~~~~G~~~i~ 130 (136)
T 2eif_A 64 APTSSKVEVPIIDRRKGQVLAIMGDMVQIMDLQTYETLELPIP--EGIEG-LEPGGEVEYIEAVGQYKIT 130 (136)
T ss_dssp EETTSEEEEECEEEEEEEEEEEETTEEEEEETTTCCEEEEECC--SCCTT-CSTTCEEEEEEETTEEEEE
T ss_pred ecCCCEeccccEeeeEEEEEEecCCEEEEEeCCCceEEEecCC--Cchhh-CCCCCEEEEEEECCEEEEE
Confidence 8999999999999999999999999999999999999999999 99999 9999999999999987633
No 9
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=99.80 E-value=2.3e-20 Score=139.17 Aligned_cols=64 Identities=8% Similarity=0.068 Sum_probs=62.1
Q ss_pred cccccceEeeEEEEeeEEEEEccCCeEEEEeCCCceeEE--eChhhhcccc-ccccCCCEEEEEEEC
Q 032740 3 INAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLE--VPLDVFGKAG-AYLQEGMKVWLQLYD 66 (135)
Q Consensus 3 ~~~~~~~e~~~i~~~~~~ylY~dgd~~~FMd~etyeQ~~--i~~~~~g~~~-~fL~eg~~v~v~~~~ 66 (135)
|+||++++.|+++++++||||.||+.|+|||++||||+. +|++.+|+++ +||+||++|.|.+|.
T Consensus 60 f~s~~kve~~~v~~~~~qyly~dg~~~~fMD~etyeq~~l~l~~~~lgd~~~~~l~eg~~v~V~~~~ 126 (138)
T 3cpf_A 60 CPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEEILITVLS 126 (138)
T ss_dssp EETTSEEEEECCEEEEEEEEEEETTEEEEECTTSCEECCSBCCSHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred eCCCCEEEeeEEEEEEEEEEEecCCEEEEEcCCCCeEeeecCCHHHHHHHHHHHhhCCCEEEEEEEh
Confidence 799999999999999999999999999999999999999 7999999999 999999999999994
No 10
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A
Probab=99.71 E-value=6.3e-18 Score=130.67 Aligned_cols=64 Identities=13% Similarity=0.201 Sum_probs=61.5
Q ss_pred cccccceEeeEEEEeeEEEEEccCC-------eEEEEeCCCceeEEe--Chh-hhccc-cccccCCCEEEEEEEC
Q 032740 3 INAIYFAAGVFVEDKSFTCLYTEND-------TAFVIESETFEQLEV--PLD-VFGKA-GAYLQEGMKVWLQLYD 66 (135)
Q Consensus 3 ~~~~~~~e~~~i~~~~~~ylY~dgd-------~~~FMd~etyeQ~~i--~~~-~~g~~-~~fL~eg~~v~v~~~~ 66 (135)
|+|+++++.+.|++++|||||.||+ .|+|||+++|||+.| |++ .+|++ .+||+||+.|.|.+|.
T Consensus 84 f~s~~kve~~~Ver~~~QyLY~dgd~~~~~~g~~~fMD~etyeq~~l~~p~~~~lgd~i~~~l~eg~~v~V~~~~ 158 (174)
T 1x6o_A 84 APSTHNVEVPFVKTYTYSVLDIQANEDPSLPAHLSLMDDEGESREDLDMPPDPALATQIKEQFDSGKDVLVVVVS 158 (174)
T ss_dssp EETTSEEEEECCEEEEEEEEEEECCSSTTSCCEEEEECTTSCEECCCBCCSCHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred eCCCCEEEeeEEEEEEEEEEEecCCcccccccEEEEEcCCCceEEEeeCCchhhHHHHHHHHhhCCCEEEEEEEe
Confidence 7999999999999999999999999 999999999999999 788 89999 8999999999999994
No 11
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Probab=99.67 E-value=4e-18 Score=131.05 Aligned_cols=64 Identities=11% Similarity=0.179 Sum_probs=61.7
Q ss_pred cccccceEeeEEEEeeEEEEEccCCeEEEEe--CCCceeEEeChhhhcccc-ccccCCCEEEEEEEC
Q 032740 3 INAIYFAAGVFVEDKSFTCLYTENDTAFVIE--SETFEQLEVPLDVFGKAG-AYLQEGMKVWLQLYD 66 (135)
Q Consensus 3 ~~~~~~~e~~~i~~~~~~ylY~dgd~~~FMd--~etyeQ~~i~~~~~g~~~-~fL~eg~~v~v~~~~ 66 (135)
|+|+++++.+.|+++++||||.||+.|+||| .+||||+.||++.+|+++ .||+||++|.|.+|+
T Consensus 84 f~s~~kve~~~ver~~~QyLY~dg~~~~FMD~~~etyeqi~l~~~~lgd~i~~~l~eg~~v~V~~~~ 150 (167)
T 3er0_A 84 SPSTHNMEVPVVKRNEYQLLDIDDGFLSLMNMDGDTKDDVKAPEGELGDSLQTAFDEGKDLMVTIIS 150 (167)
T ss_dssp EESSSEEEECCCCEEEEECCCCTTTTCCCCCSSSCCCSCCCCCCSSHHHHHHHTTSSCCCCEEEEEE
T ss_pred EcCCCccccceEEEeeEEEEEEcCCEEEEEeCCCCeeEEEEcCHHHHHHHHHHHhhCCCEEEEEEEh
Confidence 7999999999999999999999999999999 899999999999999998 789999999999994
No 12
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=99.61 E-value=5e-16 Score=119.39 Aligned_cols=64 Identities=8% Similarity=0.046 Sum_probs=58.5
Q ss_pred cccccceEeeEEEEeeEEEEEccC-CeEEEEeCCCceeE--EeChh-hhcccc-ccccCCCEEEEEEEC
Q 032740 3 INAIYFAAGVFVEDKSFTCLYTEN-DTAFVIESETFEQL--EVPLD-VFGKAG-AYLQEGMKVWLQLYD 66 (135)
Q Consensus 3 ~~~~~~~e~~~i~~~~~~ylY~dg-d~~~FMd~etyeQ~--~i~~~-~~g~~~-~fL~eg~~v~v~~~~ 66 (135)
|+|+++++.+.|+++++||||.|+ +.|+|||++||||+ .||.+ .|++++ .||++|++|.|.+|+
T Consensus 82 f~s~~kve~~~ver~~~QyLY~d~d~~~~fMD~etyeQ~~l~lp~~~~lg~~i~~~l~eG~~v~V~v~~ 150 (167)
T 3hks_A 82 VPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQMRLGFDEGKDIVVSVMS 150 (167)
T ss_dssp EETTSEEEEECCEEEEEEEEEECTTSBEEEECTTSCEECCCBCCSCHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred EcCCCEEEeeeEEEEEEEEEEECCCCEEEEEcCCCceEEEEecCchHHHHHHHHHHhhCCCEEEEEEEe
Confidence 799999999999999999999965 69999999999995 66777 899887 899999999999994
No 13
>1dj7_B Ferredoxin thioredoxin reductase: variable chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: b.34.4.3 PDB: 2pu9_B 2pvo_B 2puo_B 2puk_B 2pvd_B 2pvg_B
Probab=62.74 E-value=2.3 Score=28.38 Aligned_cols=28 Identities=29% Similarity=0.461 Sum_probs=20.9
Q ss_pred cccCCCEEE----EEEECCEEEEEeCCCeEEE
Q 032740 53 YLQEGMKVW----LQLYDGRALSGSIPKRVAC 80 (135)
Q Consensus 53 fL~eg~~v~----v~~~~~~~i~v~lP~~V~l 80 (135)
|=..||+=. +.-|+|+|||.+||-.|.+
T Consensus 26 fDl~GmEGeV~~~v~~wkGr~ISanlP~~V~F 57 (75)
T 1dj7_B 26 FDLQGMEGEVAAVLTEWQGRPISANLPVLVKF 57 (75)
T ss_dssp EECTTCEEEEEEECSEETTEECCCSSCEEEEE
T ss_pred cccccCEEEEEEEEeeccCcEecCCCCEEEEE
Confidence 333567633 3358999999999999988
No 14
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=58.39 E-value=13 Score=25.69 Aligned_cols=49 Identities=16% Similarity=0.293 Sum_probs=34.6
Q ss_pred EEEeCCC----eEEEEEEEeCCCCCCccCCCCceeEEEecCcEEEcc--------cceecCCEEEEeCC
Q 032740 70 LSGSIPK----RVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVP--------SYLEIGEEIFINPQ 126 (135)
Q Consensus 70 i~v~lP~----~V~l~V~et~p~~kGdTat~~~K~A~LetG~~i~VP--------~FI~~Gd~I~VdT~ 126 (135)
..+.+|. .+.-+|+++-| +..=.+.|+||.++.+= ..|..||+|.|...
T Consensus 10 ~~~~~P~~~e~e~~g~V~~~lg--------n~~~~V~l~nG~~~la~i~GKmRk~IwI~~GD~VlVe~~ 70 (102)
T 1jt8_A 10 IRVRIPRKEENEILGIIEQMLG--------ASRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKPW 70 (102)
T ss_dssp CCCCCSCCSSCCEEEEEECSSC--------SSEEEEEEETTEEEEEECCHHHHHHHCCCSCEEEEECCB
T ss_pred eecccCCCCCCEEEEEEEEEcC--------CCEEEEEECCCCEEEEEEcccceeeEEecCCCEEEEEec
Confidence 3455655 45666776655 45678999999887653 36899999999754
No 15
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=57.38 E-value=14 Score=22.90 Aligned_cols=34 Identities=9% Similarity=0.189 Sum_probs=26.0
Q ss_pred CCceeEEeChhhhccccccccCCCEEEEEEECCEEE
Q 032740 35 ETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRAL 70 (135)
Q Consensus 35 etyeQ~~i~~~~~g~~~~fL~eg~~v~v~~~~~~~i 70 (135)
.+--|+.||++... ++ =|++|..+.+...+|+++
T Consensus 19 ~~kGqItIPkeiR~-~L-gi~~Gd~l~i~~~~~~Ii 52 (59)
T 1yfb_A 19 DELGRVVIPIELRR-TL-GIAEKDALEIYVDDEKII 52 (59)
T ss_dssp CTTCEEECCHHHHH-HT-TCCTTCEEEEEEETTEEE
T ss_pred CCCCEEEeCHHHHH-Hc-CCCCCCEEEEEEECCEEE
Confidence 35569999998874 33 478999999988888643
No 16
>2jn4_A Hypothetical protein FIXU, NIFT; structural genomics, PSI-2, protein structure initiative, northeast ST genomics consortium, NESG; NMR {Rhodopseudomonas palustris} SCOP: b.173.1.1
Probab=54.59 E-value=37 Score=23.05 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=36.1
Q ss_pred CCCEEEEEEECCEEEEEeCCCe-EEEEEEEeCCCCCCccCCCCceeEEEecCcEEEcccc
Q 032740 56 EGMKVWLQLYDGRALSGSIPKR-VACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSY 114 (135)
Q Consensus 56 eg~~v~v~~~~~~~i~v~lP~~-V~l~V~et~p~~kGdTat~~~K~A~LetG~~i~VP~F 114 (135)
.||+|.+.. ++.-+++=+|.. ++=.|++.+. ...--...+|.||-+..+|..
T Consensus 20 ~~MKVMIR~-~~~GLs~YVpKKDLEE~VVs~E~------~~~WGG~vtLaNGw~l~lp~l 72 (87)
T 2jn4_A 20 QGMKVMIRK-TATGHSAYVAKKDLEELIVEMEN------PALWGGKVTLANGWQLELPAM 72 (87)
T ss_dssp --CCEEEEE-CSSCEEEEETTTTEEEEEEEESS------SSSCSSEEEETTSCEEECCCC
T ss_pred cCCeEEEEe-CCCceEEEEeCCcchhheeeeec------ccccCcEEEECCccEEEeCCC
Confidence 479999844 444489888875 6777777662 122345799999999999975
No 17
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.94 E-value=41 Score=23.45 Aligned_cols=29 Identities=14% Similarity=0.382 Sum_probs=19.1
Q ss_pred ceeEEEecCcEEEcc--------cceecCCEEEEeCC
Q 032740 98 YRRALLDNGVTVMVP--------SYLEIGEEIFINPQ 126 (135)
Q Consensus 98 ~K~A~LetG~~i~VP--------~FI~~Gd~I~VdT~ 126 (135)
.=.+.|+||.++.+= ..|..||+|.|...
T Consensus 29 ~f~V~l~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~~ 65 (111)
T 2dgy_A 29 LHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDPI 65 (111)
T ss_dssp EEEEECTTSCEEEEECCTTCCSCCCCCSSCEEEEEEC
T ss_pred EEEEEeCCCCEEEEEechhhcccEEEcCCCEEEEEec
Confidence 445555666554432 46899999999764
No 18
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=46.70 E-value=32 Score=26.83 Aligned_cols=34 Identities=12% Similarity=0.174 Sum_probs=25.4
Q ss_pred eeEEEecCcEEEcc-cceecCCEEEEeCCCCeeEe
Q 032740 99 RRALLDNGVTVMVP-SYLEIGEEIFINPQDDSYIG 132 (135)
Q Consensus 99 K~A~LetG~~i~VP-~FI~~Gd~I~VdT~~g~Y~~ 132 (135)
=...+..|..|..| +-|+.||.|+||..+++=++
T Consensus 101 ~~l~~HDGrti~~pd~~ik~~Dtv~idl~~~kI~d 135 (213)
T 3kbg_A 101 IQLGTHDGRTFITDDKSIKVGDVLAVSVPDMKISE 135 (213)
T ss_dssp EEEEETTSCEEEECCTTCCTTCEEEEETTTCCEEE
T ss_pred eEEEecCccEEEcCCCCcccCCEEEEECCCCceee
Confidence 36677788888885 36888888888888876543
No 19
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=44.99 E-value=9 Score=26.98 Aligned_cols=34 Identities=9% Similarity=0.110 Sum_probs=25.9
Q ss_pred eEEEecCcEE--EcccceecCCEEEEeCCCCeeEee
Q 032740 100 RALLDNGVTV--MVPSYLEIGEEIFINPQDDSYIGR 133 (135)
Q Consensus 100 ~A~LetG~~i--~VP~FI~~Gd~I~VdT~~g~Y~~R 133 (135)
.=|.-||..| ..|.-++.||.|++=..+..|+=|
T Consensus 94 NGT~vNg~ri~~~~~~~L~~GD~I~~G~str~yvl~ 129 (130)
T 4h87_A 94 HGTFLNKTRIPPRTYCRVHVGHVVRFGGSTRLFILQ 129 (130)
T ss_dssp SCEEETTEECCTTCCEECCTTCEEEETTCSEEEEEE
T ss_pred CceEECCEECCCCceeECCCCCEEEECCceEEEEEc
Confidence 3355688777 456779999999998888889743
No 20
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=44.02 E-value=38 Score=27.25 Aligned_cols=47 Identities=17% Similarity=0.373 Sum_probs=33.5
Q ss_pred EEEEEeCCCCCCccCCCCceeEEEecCcEEEccc-ceecCCEEEEeCCCCeeEe
Q 032740 80 CTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPS-YLEIGEEIFINPQDDSYIG 132 (135)
Q Consensus 80 l~V~et~p~~kGdTat~~~K~A~LetG~~i~VP~-FI~~Gd~I~VdT~~g~Y~~ 132 (135)
|+|....-+-+| -=...+..|..|.+|. -|++||.|+||..+++=++
T Consensus 124 cKV~~k~~~~~G------~pql~tHDGrti~~~dp~ik~~DTv~idl~~~kI~d 171 (265)
T 3iz6_D 124 CKVRSVQFGQKG------IPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVD 171 (265)
T ss_dssp EEEEEEECCSSS------CCEEEETTSCCCBSCSSCCCTTCEEEECSSSCCEEE
T ss_pred EEEEEEEEccCC------ceEEEeecceEEecCCCCcccCCEEEEECCCCceee
Confidence 555554333333 3367888999998875 7999999999998887543
No 21
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=42.81 E-value=30 Score=27.77 Aligned_cols=36 Identities=11% Similarity=0.212 Sum_probs=27.0
Q ss_pred CCceeEEEecCcEEEcc-cceecCCEEEEeCCCCeeE
Q 032740 96 PRYRRALLDNGVTVMVP-SYLEIGEEIFINPQDDSYI 131 (135)
Q Consensus 96 ~~~K~A~LetG~~i~VP-~FI~~Gd~I~VdT~~g~Y~ 131 (135)
++-=...+..|..|..| +-|+.||.|+||..+++=.
T Consensus 136 ~G~~ql~~HDGrti~~~d~~ik~~Dtv~idl~~~kI~ 172 (260)
T 2xzm_W 136 NQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIE 172 (260)
T ss_dssp TTEEEEEETTTEEEESCCSSCCTTBEEEEETTTTEEE
T ss_pred CCceEEEecCCceEeccCCcCccCCeEEEeCCCCcee
Confidence 33446778888888887 4778999999998887643
No 22
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=41.21 E-value=86 Score=22.85 Aligned_cols=43 Identities=12% Similarity=0.210 Sum_probs=29.6
Q ss_pred eEEEEEEEeCCCCCCccCCCCceeEEEecCcEEEcc--------cceecCCEEEEeCCC
Q 032740 77 RVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVP--------SYLEIGEEIFINPQD 127 (135)
Q Consensus 77 ~V~l~V~et~p~~kGdTat~~~K~A~LetG~~i~VP--------~FI~~Gd~I~VdT~~ 127 (135)
.+.-+|+++-| +..=.+.|++|.++.+- ..|..||+|.|..+.
T Consensus 32 e~~g~V~e~lg--------n~~f~V~l~nG~~~La~I~GKmRk~IwI~~GD~VlVe~~~ 82 (143)
T 1d7q_A 32 QEYAQVIKMLG--------NGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRD 82 (143)
T ss_dssp EEEEEEEEECS--------SSEEEEEETTTEEEEEECCSGGGGSCCCCTTCEEEEECSS
T ss_pred EEEEEEEEEcC--------CCEEEEEeCCCCEEEEEecccceeeEEecCCCEEEEeecc
Confidence 45566666655 34567778888776543 468899999997653
No 23
>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2); beta-barrel, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus}
Probab=40.48 E-value=17 Score=25.95 Aligned_cols=21 Identities=14% Similarity=0.127 Sum_probs=17.8
Q ss_pred ceecCCEEEEeCCCCeeEeec
Q 032740 114 YLEIGEEIFINPQDDSYIGRA 134 (135)
Q Consensus 114 FI~~Gd~I~VdT~~g~Y~~R~ 134 (135)
=|+.||.|+|.++.|+-.-||
T Consensus 66 GI~dGd~V~V~s~~G~v~~~a 86 (146)
T 2ki8_A 66 GLQEGDRVKVKTEFGEVVVFA 86 (146)
T ss_dssp TCCTTCEEEEECSSCEEEEEE
T ss_pred CCCCCCEEEEEeCCcEEEEEE
Confidence 467899999999999877665
No 24
>1mhx_A Immunoglobulin-binding protein G; alpha-beta protein, redesigned first beta-hairpin, immune SY; 1.80A {Finegoldia magna} SCOP: d.15.7.1 PDB: 1mi0_A
Probab=39.92 E-value=11 Score=24.04 Aligned_cols=15 Identities=13% Similarity=0.472 Sum_probs=12.5
Q ss_pred ccceecCCEEEEeCC
Q 032740 112 PSYLEIGEEIFINPQ 126 (135)
Q Consensus 112 P~FI~~Gd~I~VdT~ 126 (135)
-+||-.||+++|.|.
T Consensus 13 klfivigdrvvvt~t 27 (65)
T 1mhx_A 13 KLFIVIGDRVVVVTT 27 (65)
T ss_dssp EEEEEETTEEEEEEE
T ss_pred eEEEEEcCEEEEEEe
Confidence 379999999998764
No 25
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=39.79 E-value=16 Score=29.02 Aligned_cols=36 Identities=6% Similarity=0.108 Sum_probs=28.8
Q ss_pred CceeEEEecCcEEEcc----cceecCCEEEEeCCCCeeEe
Q 032740 97 RYRRALLDNGVTVMVP----SYLEIGEEIFINPQDDSYIG 132 (135)
Q Consensus 97 ~~K~A~LetG~~i~VP----~FI~~Gd~I~VdT~~g~Y~~ 132 (135)
+-=...+..|..|.+| +-|++||.|+||..+++=++
T Consensus 136 G~~~l~~hDgr~i~~p~~~d~~ik~~Dtv~idl~~~kI~d 175 (243)
T 3j20_E 136 ARVQLNFHDGTNHIVSIAEKDNYFTSYTVLMKVPEREILE 175 (243)
T ss_dssp TEEEECCSSCCCEECSSSSCSSCSSCEEEEEETTTTEEEE
T ss_pred CeeEEEecCCceEEcccccCCCcccCCEEEEECCCCCeee
Confidence 3345778899999997 68999999999999887543
No 26
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=37.61 E-value=50 Score=21.21 Aligned_cols=44 Identities=14% Similarity=0.074 Sum_probs=33.3
Q ss_pred EEccCCeEEEEeCCC-ceeEEeChhhhccc-----cccccCCCEEEEEEE
Q 032740 22 LYTENDTAFVIESET-FEQLEVPLDVFGKA-----GAYLQEGMKVWLQLY 65 (135)
Q Consensus 22 lY~dgd~~~FMd~et-yeQ~~i~~~~~g~~-----~~fL~eg~~v~v~~~ 65 (135)
-|++...|=|+.+++ =+.+.+..+.|... ..-|.+|..|+...-
T Consensus 15 wfn~~kGfGFI~~~~gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~ 64 (79)
T 1h95_A 15 WFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 64 (79)
T ss_dssp EEETTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEE
T ss_pred EEECCCCcEEEecCCCCccEEEEhHHccccccccccccCCCCCEEEEEEE
Confidence 356667888888776 58899988888754 567999998886554
No 27
>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5
Probab=35.37 E-value=1.1e+02 Score=23.10 Aligned_cols=60 Identities=10% Similarity=0.059 Sum_probs=41.0
Q ss_pred cceEeeEEEEeeEEEEEccCCeEEEEeCCCceeEEe--Ch-hhhcccc-ccccCCCE---EEEEEECCE
Q 032740 7 YFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEV--PL-DVFGKAG-AYLQEGMK---VWLQLYDGR 68 (135)
Q Consensus 7 ~~~e~~~i~~~~~~ylY~dgd~~~FMd~etyeQ~~i--~~-~~~g~~~-~fL~eg~~---v~v~~~~~~ 68 (135)
..++...+. ++|.|-.+++...+||.++++-..| |. ..|+..+ .-+.+|.. |.++-.-|+
T Consensus 96 hnm~VPvVk--~yQlldI~dg~lsLMd~~G~~k~dl~lp~~~~l~~~i~~~f~~G~~~~~V~v~~amG~ 162 (176)
T 1khi_A 96 QTMLGPVFK--QYRVLDMQDGSIVAMTETGDVKQNLPVIDQSSLWNRLQKAFESGRGSVRVLVVSDHGR 162 (176)
T ss_dssp EEEEEECCE--EEEEEEEETTEEEEECTTCCEEEEEEBCCSTTHHHHHHHHHTTTGGGEEEEEEEETTE
T ss_pred ceeccceeE--EEEEEEEcCCeEEEEeCCCCEEeeeEccchHHHHHHHHHHhhCCCceEEEEEEeECCc
Confidence 356666774 9999999999999999999976665 43 2344333 34567755 666555554
No 28
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=35.19 E-value=36 Score=22.47 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=19.0
Q ss_pred ccCCCEEEEEEECCEEEEEeCCCeEEEEEEEeCCC
Q 032740 54 LQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHAS 88 (135)
Q Consensus 54 L~eg~~v~v~~~~~~~i~v~lP~~V~l~V~et~p~ 88 (135)
+.+|+.+.+.++. ..+.+.|++|+|+
T Consensus 42 V~~GD~I~i~~~G---------~~i~F~Vv~t~P~ 67 (83)
T 2jv2_A 42 VRTGDVIGISILG---------KEVKFKVVQAYPS 67 (83)
T ss_dssp ECTTCEEEEEETT---------EEEEEEEEEEESS
T ss_pred ccCCCEEEEeeCC---------CEEEEEEEEecCc
Confidence 4567777765533 7788899999993
No 29
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=34.20 E-value=40 Score=21.38 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=23.8
Q ss_pred eeEEeChhhhccccccccCCCEEEEEEECCEEE
Q 032740 38 EQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRAL 70 (135)
Q Consensus 38 eQ~~i~~~~~g~~~~fL~eg~~v~v~~~~~~~i 70 (135)
-|+.||++... ++ =|.+|.++.+...+|..+
T Consensus 13 ~~v~iPk~~~~-~l-gl~~gd~v~i~~~~~~ii 43 (82)
T 1mvf_D 13 PAVRIPATLMQ-AL-NLNIDDEVKIDLVDGKLI 43 (82)
T ss_dssp EEEECCHHHHH-HT-TCCTTCBEEEEEETTEEE
T ss_pred cEEEECHHHHH-Hc-CCCCCCEEEEEEECCEEE
Confidence 68999998874 33 357899999988888754
No 30
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=33.37 E-value=48 Score=26.59 Aligned_cols=35 Identities=11% Similarity=0.255 Sum_probs=28.0
Q ss_pred ceeEEEecCcEEEccc-ceecCCEEEEeCCCCeeEe
Q 032740 98 YRRALLDNGVTVMVPS-YLEIGEEIFINPQDDSYIG 132 (135)
Q Consensus 98 ~K~A~LetG~~i~VP~-FI~~Gd~I~VdT~~g~Y~~ 132 (135)
-=...+..|..|.+|. -|++||.|+||..+++=++
T Consensus 136 ~pql~tHDGrti~~~dp~ik~~Dtv~idl~~~kI~d 171 (261)
T 3u5c_E 136 VPYVVTHDGRTIRYPDPNIKVNDTVKIDLASGKITD 171 (261)
T ss_dssp CEEEEETTTEEEESCCSSCCTTCEEEECSSSSCEEE
T ss_pred ceEEEEecceEEecCCCCcccCCEEEEECCCCceee
Confidence 3367788899998875 7999999999999887543
No 31
>3off_A LDLR chaperone BOCA; MESD, molecular chaperone, protein folding, YWTD propeller; 2.00A {Drosophila melanogaster} PDB: 3ofe_A*
Probab=32.56 E-value=40 Score=22.94 Aligned_cols=49 Identities=16% Similarity=0.116 Sum_probs=34.5
Q ss_pred cccccceEeeEEEEeeEEEEEccCCeEEEEeCCCceeEEeChhhhccccccccCCCEEEEEEECCEE
Q 032740 3 INAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRA 69 (135)
Q Consensus 3 ~~~~~~~e~~~i~~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~~g~~~~fL~eg~~v~v~~~~~~~ 69 (135)
++++-.++.-.|+...+-|++.||. ..-++.+||....+|.=+.+|++.
T Consensus 39 ~Nnhi~~~ry~Id~dr~ifmf~DGs------------------~a~e~kdfL~~Q~~~~~vtiE~q~ 87 (90)
T 3off_A 39 WNNHIQAERYMVDDNRAIFLFKDGT------------------QAWDAKDFLIEQERCKGVTIENKE 87 (90)
T ss_dssp HHTTCCEEEEEEETTEEEEEESSGG------------------GHHHHHHHHTTSTTEEEEEETTEE
T ss_pred HhCCeeEEEEEecCCEEEEEEcChH------------------HHHHHHHHHhcCcceeEEEEeccC
Confidence 5566666777777777777777764 445677888888888777777764
No 32
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=29.82 E-value=29 Score=23.83 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=14.8
Q ss_pred ceecCCEEEEeCCCCee
Q 032740 114 YLEIGEEIFINPQDDSY 130 (135)
Q Consensus 114 FI~~Gd~I~VdT~~g~Y 130 (135)
=|..||.|.||-.+|.=
T Consensus 62 kV~~GDVI~Id~~sG~V 78 (95)
T 2cqa_A 62 KVQAGDVITIDKATGKI 78 (95)
T ss_dssp TCCTTSEEEEETTTTEE
T ss_pred CceeCCEEEEEccCCEE
Confidence 47899999999999863
No 33
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=29.01 E-value=18 Score=21.44 Aligned_cols=31 Identities=19% Similarity=0.154 Sum_probs=23.7
Q ss_pred CceeEEeChhhhccccccccCCCEEEEEEECCE
Q 032740 36 TFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGR 68 (135)
Q Consensus 36 tyeQ~~i~~~~~g~~~~fL~eg~~v~v~~~~~~ 68 (135)
+=-|+.||++... ++ =|++|..+.+...+|.
T Consensus 10 ~kgqi~IPk~ir~-~l-gi~~Gd~v~i~~~~~~ 40 (53)
T 2l66_A 10 RNYQVTIPAKVRQ-KF-QIKEGDLVKVTFDESE 40 (53)
T ss_dssp SSSCBCCCHHHHH-HS-CCCTTCEEEEEECSSS
T ss_pred CCCEEEeCHHHHH-Hc-CcCCCCEEEEEEECCE
Confidence 4468999998874 33 4789999998887775
No 34
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=28.90 E-value=1.1e+02 Score=19.17 Aligned_cols=45 Identities=20% Similarity=0.118 Sum_probs=34.9
Q ss_pred EccCCeEEEEeCCCceeEEeChhhhccc-cccccCCCEEEEEEECC
Q 032740 23 YTENDTAFVIESETFEQLEVPLDVFGKA-GAYLQEGMKVWLQLYDG 67 (135)
Q Consensus 23 Y~dgd~~~FMd~etyeQ~~i~~~~~g~~-~~fL~eg~~v~v~~~~~ 67 (135)
|++...|=|+.+++-+.+.+..+.|... ..-|.+|+.|+.....+
T Consensus 9 fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~ 54 (73)
T 3a0j_A 9 FNAEKGYGFIEREGDTDVFVHYTAINAKGFRTLNEGDIVTFDVEPG 54 (73)
T ss_dssp EETTTTEEEEECTTSCCEEEEGGGBCSSSCSSCCTTCEEEEEEECC
T ss_pred EECCCCEEEEecCCCCcEEEEhhhccccCCCCCCCCCEEEEEEEEC
Confidence 5666788888887769999988888754 36799999988766544
No 35
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1
Probab=28.40 E-value=62 Score=23.87 Aligned_cols=37 Identities=5% Similarity=0.002 Sum_probs=25.2
Q ss_pred CCEEEEEe-CC-CeEEEEEEEeCCCCCCccCCCCceeEEEecCcEEEc
Q 032740 66 DGRALSGS-IP-KRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMV 111 (135)
Q Consensus 66 ~~~~i~v~-lP-~~V~l~V~et~p~~kGdTat~~~K~A~LetG~~i~V 111 (135)
+|..+.+- .+ ..+.++|+.+.|. ...+.+.++.+|.|
T Consensus 137 ~G~~i~v~~~g~~~i~f~V~~~~P~---------~~~v~It~~TeI~v 175 (179)
T 1wlf_A 137 PKAVVPIWVDQQTYIFIQIVTLMPA---------APYGRLETNTKLLI 175 (179)
T ss_dssp TTCEEEEESSSSCEEEEEEEEEESC---------CSSEECCTTCEEEE
T ss_pred CCCEEEEEecCCeEEEEEEEEeeCC---------CCeEEECCCcEEEE
Confidence 34444443 23 7789999999992 13678888888776
No 36
>3ofh_A LDLR chaperone MESD; molecular chaperone, protein folding, YWTD propeller; 2.01A {Mus musculus}
Probab=28.24 E-value=29 Score=23.63 Aligned_cols=49 Identities=12% Similarity=0.088 Sum_probs=33.3
Q ss_pred cccccceEeeEEEEeeEEEEEccCCeEEEEeCCCceeEEeChhhhccccccccCCCEEEEEEECCEE
Q 032740 3 INAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRA 69 (135)
Q Consensus 3 ~~~~~~~e~~~i~~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~~g~~~~fL~eg~~v~v~~~~~~~ 69 (135)
++++-.+++-.|+...+-|+..|| ...-++.+||....+|.=+.+||+.
T Consensus 38 ~Nnhi~~~ry~I~~dr~ifm~~DG------------------s~awe~kdFL~~Q~~v~~vtiegq~ 86 (89)
T 3ofh_A 38 FNANYDVQRFIVGSDRAIFMLRDG------------------SYAWEIKDFLVSQDRCAEVTLEGQM 86 (89)
T ss_dssp HHTTCCEEEEECSTTEEEEEESCG------------------GGHHHHHHHHHTSTTEEEEEETTEE
T ss_pred HhCCceEEEEEecCCEEEEEEcCh------------------HHHHHHHHHHHcCcceeEEEEeccC
Confidence 455666666666666666666655 3455778899888888877777764
No 37
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=28.08 E-value=81 Score=19.37 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=33.6
Q ss_pred EccCCeEEEEeCCCceeEEeChhhhccc-cccccCCCEEEEEEECC
Q 032740 23 YTENDTAFVIESETFEQLEVPLDVFGKA-GAYLQEGMKVWLQLYDG 67 (135)
Q Consensus 23 Y~dgd~~~FMd~etyeQ~~i~~~~~g~~-~~fL~eg~~v~v~~~~~ 67 (135)
|++...|=|+.+++-+.+.+..+.+... ..-|.+|+.|+.....+
T Consensus 8 fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~ 53 (66)
T 1g6p_A 8 FDSKKGYGFITKDEGGDVFVHWSAIEMEGFKTLKEGQVVEFEIQEG 53 (66)
T ss_dssp EETTTTEEEEEETTSCBCBBCSSSSCCSSCCCCCSSSEEEEEEECS
T ss_pred EECCCCEEEEecCCCceEEEEhHHccccCCCCCCCCCEEEEEEEEC
Confidence 5666777788777668899988888654 36799999888665543
No 38
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=27.39 E-value=25 Score=30.32 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=19.9
Q ss_pred EEEcccceecCCEEEEeCCCCe
Q 032740 108 TVMVPSYLEIGEEIFINPQDDS 129 (135)
Q Consensus 108 ~i~VP~FI~~Gd~I~VdT~~g~ 129 (135)
-|.||.|-+.|..|.||++|-+
T Consensus 432 Lv~VP~Fs~T~~~vLvdl~tLe 453 (476)
T 3e0j_A 432 LVTVPDFSATQTACLVNLRSLA 453 (476)
T ss_dssp EEEEECHHHHCEEEEEETTTTB
T ss_pred EEEcCCcCCCCeEEEEECcccc
Confidence 4889999999999999999865
No 39
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=26.59 E-value=32 Score=24.06 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.1
Q ss_pred EEEecCcEEEcccceecCCEEEEe
Q 032740 101 ALLDNGVTVMVPSYLEIGEEIFIN 124 (135)
Q Consensus 101 A~LetG~~i~VP~FI~~Gd~I~Vd 124 (135)
-|.-||..|.-|.-++.||+|.+-
T Consensus 91 gt~VNG~~V~~~~~L~~GD~I~lG 114 (124)
T 3fm8_A 91 RTFVNGSSVSSPIQLHHGDRILWG 114 (124)
T ss_dssp CEEETTEECCSCEEECTTCEEEET
T ss_pred CEEECCEEcCCcEECCCCCEEEEC
Confidence 478899999989999999999874
No 40
>1i96_V Translation initiation factor IF3; 30S ribosome; HET: WO2; 4.20A {Thermus thermophilus} SCOP: d.68.1.1
Probab=25.82 E-value=17 Score=24.44 Aligned_cols=14 Identities=14% Similarity=0.380 Sum_probs=12.1
Q ss_pred cceecCCEEEEeCC
Q 032740 113 SYLEIGEEIFINPQ 126 (135)
Q Consensus 113 ~FI~~Gd~I~VdT~ 126 (135)
-|++.||+|+|.-+
T Consensus 25 ~FL~~GdKVKvti~ 38 (89)
T 1i96_V 25 RFLQEGHKVKVTIM 38 (89)
T ss_pred HHHHCCCEEEEEEE
Confidence 58999999999875
No 41
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=25.31 E-value=25 Score=22.81 Aligned_cols=21 Identities=19% Similarity=0.558 Sum_probs=15.5
Q ss_pred cCcEEEccc-----ceecCCEEEEeC
Q 032740 105 NGVTVMVPS-----YLEIGEEIFINP 125 (135)
Q Consensus 105 tG~~i~VP~-----FI~~Gd~I~VdT 125 (135)
.|+.+.+|. +.++||.|+|-.
T Consensus 3 ~~~~i~~p~~~LrK~F~~GDHVkVi~ 28 (69)
T 2do3_A 3 SGSSGEFPAQELRKYFKMGDHVKVIA 28 (69)
T ss_dssp SCSCCCCCCCCCCSSCCTTCEEEESS
T ss_pred CCcEEEEcHHHceeeccCCCeEEEec
Confidence 466777774 778999998854
No 42
>4div_S ORF46; distal tail protein, receptor-binding protein, phage basepla adsorption apparatus, genome injection device, viral protei; 3.80A {Lactococcus phage tp901-1}
Probab=25.15 E-value=52 Score=25.09 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=17.6
Q ss_pred EEEecCcEEEcc-cceecCCEEEEeCCCC
Q 032740 101 ALLDNGVTVMVP-SYLEIGEEIFINPQDD 128 (135)
Q Consensus 101 A~LetG~~i~VP-~FI~~Gd~I~VdT~~g 128 (135)
.++.|| .|++- .=++.||+|+||+..+
T Consensus 180 i~i~ng-~i~i~~~~~~~gd~ivID~~~~ 207 (253)
T 4div_S 180 LLATDG-NYRLKSSQAKKGDFLEFDFQTG 207 (253)
T ss_dssp EEEESS-SCEEEETTCCTTTCEEEEETTS
T ss_pred EEEEcC-EEEEEeCcccCCCEEEEEcCCC
Confidence 344466 55553 3337999999997544
No 43
>3zv0_C H/ACA ribonucleoprotein complex subunit 4; cell cycle, RNP assembly, X-linked dyskeratosis congenita; 2.80A {Saccharomyces cerevisiae}
Probab=23.85 E-value=66 Score=24.61 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=22.0
Q ss_pred cCcEEEcccc------eecCCEEEEeCCCCeeEeec
Q 032740 105 NGVTVMVPSY------LEIGEEIFINPQDDSYIGRA 134 (135)
Q Consensus 105 tG~~i~VP~F------I~~Gd~I~VdT~~g~Y~~R~ 134 (135)
+|+.++.|-. ++.||.|.|-+.+|+.+.|.
T Consensus 90 ~GaSLl~pGV~~v~g~F~~GD~V~V~~~~G~~IAvG 125 (195)
T 3zv0_C 90 YGAKLMIPGLLRYEEGIELYDEIVLITTKGEAIAVA 125 (195)
T ss_dssp TTCCEEGGGEEEEETTCCTTCEEEEECTTCCEEEEE
T ss_pred cCCCccCCCcEecCCCcCCCCEEEEEcCCCCEEEEE
Confidence 4555666654 55699999999999987663
No 44
>2ln7_A LPXTG-SITE transpeptidase family protein; sortase, sortase family D, enzyme, protein binding; NMR {Bacillus anthracis}
Probab=22.43 E-value=44 Score=23.67 Aligned_cols=19 Identities=11% Similarity=0.286 Sum_probs=16.5
Q ss_pred eecCCEEEEeCCCCeeEee
Q 032740 115 LEIGEEIFINPQDDSYIGR 133 (135)
Q Consensus 115 I~~Gd~I~VdT~~g~Y~~R 133 (135)
++.||.|.|.+.++.|.=|
T Consensus 76 l~~GD~i~v~~~~~~~~Y~ 94 (147)
T 2ln7_A 76 LKEKDTLVLEYDNKTYTYE 94 (147)
T ss_dssp SSTTCEEEEEETTEEEEEE
T ss_pred ccCCCEEEEEECCcEEEEE
Confidence 7899999999999988644
No 45
>3gld_A Pilin; all-beta, cell adhesion, structural protein, isopeptid WALL, fimbrium, isopeptide bond, membrane; 2.03A {Streptococcus pyogenes serotype M1} PDB: 3b2m_A 3gle_A
Probab=21.98 E-value=63 Score=26.18 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=28.0
Q ss_pred cCCCEEEEEEECCEEEEEe-CCCeEEEEEEEeCCCCCC
Q 032740 55 QEGMKVWLQLYDGRALSGS-IPKRVACTIKEIHASTKG 91 (135)
Q Consensus 55 ~eg~~v~v~~~~~~~i~v~-lP~~V~l~V~et~p~~kG 91 (135)
..|....+.+-+|+-|.+. ||.-+.++|.|++....|
T Consensus 215 ~~G~~~tftLKhGesi~i~gLP~G~~YtVtE~d~~~dG 252 (295)
T 3gld_A 215 SIDQLYHFTLKDGESIKVTNLPVGVDYVVTEDDYKSEK 252 (295)
T ss_dssp ETTSCEEEEECTTCEEEEEEEETTCEEEEEECCCGGGT
T ss_pred ecCceEEEEECCCCEEEEeCCCCCCEEEEEECcCCCCC
Confidence 3444566667778888888 999999999999874433
No 46
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=21.87 E-value=52 Score=22.08 Aligned_cols=18 Identities=17% Similarity=0.314 Sum_probs=13.3
Q ss_pred eecCCEEEEe-CCCCeeEe
Q 032740 115 LEIGEEIFIN-PQDDSYIG 132 (135)
Q Consensus 115 I~~Gd~I~Vd-T~~g~Y~~ 132 (135)
+++||.|+|. -....|-+
T Consensus 60 l~~Gdvv~i~ng~v~~~~g 78 (106)
T 2k75_A 60 LQDSDVVRIDNARVAQFNG 78 (106)
T ss_dssp CCTTEEEEEEEEEEEEETT
T ss_pred cCCCCEEEEEeeEEeEECC
Confidence 9999999987 55555543
No 47
>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A
Probab=21.44 E-value=52 Score=27.80 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=21.6
Q ss_pred ceeEEEecCcEEEcccceecCCEEEEeCC
Q 032740 98 YRRALLDNGVTVMVPSYLEIGEEIFINPQ 126 (135)
Q Consensus 98 ~K~A~LetG~~i~VP~FI~~Gd~I~VdT~ 126 (135)
.++..|.+|.. |.|++.||.|.+.-.
T Consensus 372 ~~~v~l~~g~~---~~fL~~GD~V~~~~~ 397 (421)
T 1hyo_A 372 TKAIDVGQGQT---RTFLLDGDEVIITGH 397 (421)
T ss_dssp TSCEECSTTCE---ESSCCTTCEEEEEEE
T ss_pred cceeeccCCCC---CccCCCCCEEEEEEE
Confidence 67888888874 899999999988654
No 48
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=21.33 E-value=74 Score=28.91 Aligned_cols=53 Identities=6% Similarity=0.046 Sum_probs=30.8
Q ss_pred EEEEEeCCCeEE---EEEEEeCCC-CCCc--c-CCCCceeEEEecCcEEEcccceecCCEEEEe
Q 032740 68 RALSGSIPKRVA---CTIKEIHAS-TKGP--T-VTPRYRRALLDNGVTVMVPSYLEIGEEIFIN 124 (135)
Q Consensus 68 ~~i~v~lP~~V~---l~V~et~p~-~kGd--T-at~~~K~A~LetG~~i~VP~FI~~Gd~I~Vd 124 (135)
.-+.+.||++++ +..+-..|. --|- + .-.+.||.. +....|.|+..||.+.|.
T Consensus 41 ~~~~~~lPDsiTtwrv~ava~s~~~g~G~a~~~~~~v~kp~~----v~~~LP~~v~~GD~~~i~ 100 (915)
T 2hr0_B 41 KLMNIFLKDSITTWEILAVSMSDKKGICVADPFEVTVMQDFF----IDLRLPYSVVRNEQVEIR 100 (915)
T ss_dssp EEEEEECCSCCEEEEEEEEEEETTTEEEECCCEEEEECCSSE----EEEECCSEEETTCCEEEE
T ss_pred eEEEEeCCCCccEEEEEEEEEcCCCCeeecCCceEEEeccEE----EEccCCCEEecCcEEEEE
Confidence 448899999984 333333331 1111 1 011234444 357899999999999764
No 49
>1t2w_A Sortase; transpeptidase, beta barrel, hydrolase; 1.80A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1t2o_A 1ija_A 2kid_A* 1t2p_A
Probab=20.40 E-value=48 Score=23.24 Aligned_cols=18 Identities=6% Similarity=0.158 Sum_probs=15.3
Q ss_pred eecCCEEEEeCCCCeeEe
Q 032740 115 LEIGEEIFINPQDDSYIG 132 (135)
Q Consensus 115 I~~Gd~I~VdT~~g~Y~~ 132 (135)
++.||.|.|.|.++.|.=
T Consensus 75 l~~Gd~i~v~~~~~~~~Y 92 (145)
T 1t2w_A 75 AKKGSMVYFKVGNETRKY 92 (145)
T ss_dssp CCTTCEEEEEETTEEEEE
T ss_pred CCCCCEEEEEECCEEEEE
Confidence 689999999999887753
No 50
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=20.08 E-value=81 Score=20.64 Aligned_cols=51 Identities=6% Similarity=0.044 Sum_probs=35.6
Q ss_pred EeeEEEEeeEEEEEccCCeEEEEeCCCceeEEeChhhhccccccccCCCEEE
Q 032740 10 AGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVW 61 (135)
Q Consensus 10 e~~~i~~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~~g~~~~fL~eg~~v~ 61 (135)
+...++++.++..+..+..|++.|..+=.-..|....+... .-|++|..+.
T Consensus 41 ~d~~vSr~Ha~i~~~~~~~~~l~Dl~S~nGt~vng~~i~~~-~~L~~Gd~i~ 91 (106)
T 3gqs_A 41 SDMSISRQHAKIIIGNDNSVLIEDLGSKNGVIVEGRKIEHQ-STLSANQVVA 91 (106)
T ss_dssp CCTTSCSSCEEEEECTTSCEEEEECSCSSCCEETTEECSSE-EECCTTCCEE
T ss_pred CCCCcchhhcEEEECCCCcEEEEECcCCCCeEECCEECCCC-eECCCCCEEE
Confidence 34567788888888755668999986666666776666542 3688887665
Done!