BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032742
         (135 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DWF|A Chain A, Crystal Structure Of A Hla-B Associated Transcript 3
          (Bat3) From Homo Sapiens At 1.80 A Resolution
 pdb|4DWF|B Chain B, Crystal Structure Of A Hla-B Associated Transcript 3
          (Bat3) From Homo Sapiens At 1.80 A Resolution
          Length = 90

 Score = 32.0 bits (71), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 12/90 (13%)

Query: 8  ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLXXXXX 67
          +S+E+ VKT+     + + V +   V++ ++ IA S +  +P E  RL+++G+VL     
Sbjct: 4  DSLEVLVKTLDSQTRTFI-VGAQXNVKEFKEHIAASVS--IPSEKQRLIYQGRVLQDDKK 60

Query: 68 XXXXXXVYLQLSN-GDSVIAAVKPKPPPRH 96
                  LQ  N G  VI  V+  PP  H
Sbjct: 61 --------LQEYNVGGKVIHLVERAPPQTH 82


>pdb|4EEW|A Chain A, Crystal Structure Of The Ubl Domain Of Bag6
 pdb|4EEW|B Chain B, Crystal Structure Of The Ubl Domain Of Bag6
          Length = 88

 Score = 30.4 bits (67), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 35/55 (63%), Gaps = 3/55 (5%)

Query: 8  ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVL 62
          +S+E+ VKT+     + + V + + V++ ++ IA S +  +P E  RL+++G+VL
Sbjct: 16 DSLEVLVKTLDSQTRTFI-VGAQMNVKEFKEHIAASVS--IPSEKQRLIYQGRVL 67


>pdb|1WX9|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like
          Domain In The Human Bat3 Protein
          Length = 86

 Score = 29.3 bits (64), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 7  SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVL 62
          S  +E+ VKT+  +      V + + V++ ++ IA S +  +P E  RL+++G+VL
Sbjct: 5  SSGLEVLVKTL-DSQTRTFIVGAQMNVKEFKEHIAASVS--IPSEKQRLIYQGRVL 57


>pdb|3M63|B Chain B, Crystal Structure Of Ufd2 In Complex With The
          Ubiquitin-Like (Ubl) Domain Of Dsk2
          Length = 101

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 41 ATSSANHLPIENLRLVFRGKVL 62
          A + AN +P+ N RL++ GK+L
Sbjct: 56 AINKANGIPVANQRLIYSGKIL 77


>pdb|2BWE|S Chain S, The Crystal Structure Of The Complex Between The Uba And
          Ubl Domains Of Dsk2
 pdb|2BWE|T Chain T, The Crystal Structure Of The Complex Between The Uba And
          Ubl Domains Of Dsk2
 pdb|2BWE|U Chain U, The Crystal Structure Of The Complex Between The Uba And
          Ubl Domains Of Dsk2
 pdb|2BWF|A Chain A, Crystal Sturcture Of The Ubl Domain Of Dsk2 From S.
          Cerevisiae
 pdb|2BWF|B Chain B, Crystal Sturcture Of The Ubl Domain Of Dsk2 From S.
          Cerevisiae
          Length = 77

 Score = 27.7 bits (60), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 41 ATSSANHLPIENLRLVFRGKVL 62
          A + AN +P+ N RL++ GK+L
Sbjct: 32 AINKANGIPVANQRLIYSGKIL 53


>pdb|3RJD|A Chain A, Crystal Structure Of Fc Ri And Its Implication To High
           Affinity Immunoglobulin G Binding
          Length = 262

 Score = 26.2 bits (56), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)

Query: 2   GMGE---ISESVEITVKTIGPAPPSRLSVSSPI 31
           GMG+    S  + +TVK + PAP    SV+SP+
Sbjct: 150 GMGKHRYTSAGISVTVKELFPAPVLNASVTSPL 182


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.372 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,717,481
Number of Sequences: 62578
Number of extensions: 63909
Number of successful extensions: 89
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 86
Number of HSP's gapped (non-prelim): 7
length of query: 135
length of database: 14,973,337
effective HSP length: 88
effective length of query: 47
effective length of database: 9,466,473
effective search space: 444924231
effective search space used: 444924231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)