Query 032742
Match_columns 135
No_of_seqs 111 out of 1109
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 05:22:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032742.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032742hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01791 Ubl5 UBL5 ubiquitin-li 99.8 7.2E-19 1.6E-23 117.5 7.6 70 9-86 1-70 (73)
2 cd01807 GDX_N ubiquitin-like d 99.8 1.1E-18 2.3E-23 115.7 7.8 73 10-90 1-73 (74)
3 cd01797 NIRF_N amino-terminal 99.8 2.2E-18 4.8E-23 116.3 7.4 76 10-92 1-77 (78)
4 cd01805 RAD23_N Ubiquitin-like 99.7 8.1E-18 1.8E-22 111.5 8.5 73 10-90 1-76 (77)
5 cd01804 midnolin_N Ubiquitin-l 99.7 1.1E-17 2.4E-22 112.6 7.8 71 9-88 1-71 (78)
6 cd01793 Fubi Fubi ubiquitin-li 99.7 4.2E-17 9.1E-22 108.2 7.8 69 10-88 1-70 (74)
7 cd01802 AN1_N ubiquitin-like d 99.7 4.9E-17 1.1E-21 115.2 8.6 73 7-87 25-98 (103)
8 cd01790 Herp_N Homocysteine-re 99.7 5.1E-17 1.1E-21 110.5 7.0 72 9-87 1-78 (79)
9 PTZ00044 ubiquitin; Provisiona 99.7 9.5E-17 2.1E-21 106.2 7.8 71 10-88 1-71 (76)
10 cd01794 DC_UbP_C dendritic cel 99.7 6.5E-17 1.4E-21 107.1 6.7 69 12-88 1-69 (70)
11 cd01792 ISG15_repeat1 ISG15 ub 99.7 8.5E-17 1.8E-21 108.4 7.1 71 10-88 3-75 (80)
12 cd01810 ISG15_repeat2 ISG15 ub 99.7 1.1E-16 2.4E-21 106.2 6.9 68 12-87 1-69 (74)
13 cd01806 Nedd8 Nebb8-like ubiq 99.7 2.2E-16 4.8E-21 103.7 8.3 70 10-87 1-70 (76)
14 cd01798 parkin_N amino-termina 99.7 1.2E-16 2.7E-21 104.7 6.6 67 12-86 1-67 (70)
15 cd01809 Scythe_N Ubiquitin-lik 99.7 2.6E-16 5.7E-21 102.4 7.9 70 10-87 1-70 (72)
16 cd01813 UBP_N UBP ubiquitin pr 99.7 1.6E-16 3.5E-21 106.2 6.9 70 10-88 1-73 (74)
17 cd01808 hPLIC_N Ubiquitin-like 99.7 2.4E-16 5.3E-21 103.6 7.5 68 10-86 1-68 (71)
18 PF00240 ubiquitin: Ubiquitin 99.7 1.8E-16 3.8E-21 102.9 6.3 68 15-90 1-68 (69)
19 cd01812 BAG1_N Ubiquitin-like 99.7 2.3E-16 5.1E-21 102.7 6.8 70 10-88 1-70 (71)
20 cd01803 Ubiquitin Ubiquitin. U 99.7 3.7E-16 7.9E-21 102.7 7.7 71 10-88 1-71 (76)
21 cd01796 DDI1_N DNA damage indu 99.7 3.3E-16 7.2E-21 103.5 6.5 67 12-86 1-69 (71)
22 TIGR00601 rad23 UV excision re 99.6 4.8E-15 1E-19 125.5 8.4 74 10-91 1-78 (378)
23 cd01800 SF3a120_C Ubiquitin-li 99.5 1.6E-14 3.5E-19 96.4 6.7 62 22-90 9-70 (76)
24 smart00213 UBQ Ubiquitin homol 99.5 1.9E-14 4.2E-19 90.8 6.5 64 10-82 1-64 (64)
25 cd01763 Sumo Small ubiquitin-r 99.5 9.1E-14 2E-18 95.2 9.2 77 3-87 5-82 (87)
26 KOG0010 Ubiquitin-like protein 99.5 5E-14 1.1E-18 121.7 6.8 73 9-90 15-88 (493)
27 cd01815 BMSC_UbP_N Ubiquitin-l 99.5 6.3E-14 1.4E-18 94.5 5.2 52 29-87 19-73 (75)
28 KOG0005 Ubiquitin-like protein 99.5 3.5E-14 7.5E-19 92.0 3.7 67 10-84 1-67 (70)
29 cd01814 NTGP5 Ubiquitin-like N 99.4 5.6E-13 1.2E-17 95.9 8.0 83 7-94 2-95 (113)
30 cd01799 Hoil1_N Ubiquitin-like 99.4 1.1E-12 2.4E-17 88.0 6.7 66 12-86 5-72 (75)
31 cd01769 UBL Ubiquitin-like dom 99.4 1.9E-12 4.1E-17 82.6 6.8 67 14-88 2-68 (69)
32 KOG0011 Nucleotide excision re 99.4 1.2E-12 2.5E-17 108.7 6.9 74 10-91 1-77 (340)
33 KOG0004 Ubiquitin/40S ribosoma 99.3 7.6E-13 1.7E-17 99.6 4.0 71 10-88 1-72 (156)
34 KOG0003 Ubiquitin/60s ribosoma 99.3 7.3E-13 1.6E-17 94.9 1.1 70 10-87 1-71 (128)
35 cd01789 Alp11_N Ubiquitin-like 99.2 1.6E-10 3.4E-15 78.8 8.5 72 9-87 1-79 (84)
36 PF11976 Rad60-SLD: Ubiquitin- 99.1 9.4E-11 2E-15 76.6 5.6 67 10-84 1-68 (72)
37 cd01795 USP48_C USP ubiquitin- 99.1 2E-10 4.3E-15 81.4 6.2 60 23-88 17-76 (107)
38 cd01801 Tsc13_N Ubiquitin-like 99.1 2.8E-10 6E-15 76.1 6.1 69 11-87 2-75 (77)
39 PLN02560 enoyl-CoA reductase 99.1 5E-10 1.1E-14 92.8 7.8 73 10-90 1-84 (308)
40 PF14560 Ubiquitin_2: Ubiquiti 98.9 3.6E-09 7.9E-14 72.0 7.2 76 9-87 1-81 (87)
41 PF13881 Rad60-SLD_2: Ubiquiti 98.9 3.3E-08 7.2E-13 71.0 9.8 81 8-93 1-92 (111)
42 KOG4248 Ubiquitin-like protein 98.8 4.7E-09 1E-13 97.3 6.3 71 11-90 4-74 (1143)
43 KOG1872 Ubiquitin-specific pro 98.8 2.2E-08 4.7E-13 86.6 8.1 105 9-123 3-114 (473)
44 KOG0001 Ubiquitin and ubiquiti 98.7 1.5E-07 3.3E-12 59.0 8.6 68 12-87 2-69 (75)
45 PF11543 UN_NPL4: Nuclear pore 98.6 5.4E-08 1.2E-12 66.1 5.2 75 8-87 3-78 (80)
46 cd01788 ElonginB Ubiquitin-lik 98.5 3.2E-07 6.9E-12 66.4 5.8 71 11-88 2-80 (119)
47 cd00196 UBQ Ubiquitin-like pro 98.5 8.8E-07 1.9E-11 52.3 6.6 58 23-87 10-67 (69)
48 KOG0006 E3 ubiquitin-protein l 98.1 9.9E-06 2.1E-10 68.0 6.7 73 11-90 2-77 (446)
49 PF10302 DUF2407: DUF2407 ubiq 97.9 5.7E-05 1.2E-09 53.1 6.3 54 12-67 3-60 (97)
50 KOG3493 Ubiquitin-like protein 97.5 3.7E-05 8.1E-10 50.7 1.1 68 9-84 1-68 (73)
51 KOG1769 Ubiquitin-like protein 97.5 0.0012 2.6E-08 46.7 8.5 72 8-87 19-91 (99)
52 cd01811 OASL_repeat1 2'-5' oli 97.3 0.0022 4.8E-08 43.4 7.8 66 10-84 1-71 (80)
53 KOG4583 Membrane-associated ER 97.2 0.00024 5.2E-09 59.9 2.6 83 4-91 4-90 (391)
54 PF00789 UBX: UBX domain; Int 97.1 0.0054 1.2E-07 40.7 8.0 76 5-86 2-80 (82)
55 KOG4495 RNA polymerase II tran 97.1 0.00069 1.5E-08 48.0 3.5 61 12-79 3-65 (110)
56 PF08817 YukD: WXG100 protein 96.9 0.003 6.5E-08 42.1 5.3 69 10-86 3-78 (79)
57 KOG1639 Steroid reductase requ 96.5 0.0041 8.9E-08 50.9 4.8 75 10-90 1-80 (297)
58 smart00166 UBX Domain present 96.4 0.038 8.2E-07 36.7 8.2 74 8-86 3-78 (80)
59 KOG3206 Alpha-tubulin folding 96.2 0.018 3.8E-07 46.0 6.5 111 9-124 1-119 (234)
60 cd01767 UBX UBX (ubiquitin reg 96.0 0.11 2.4E-06 34.1 8.6 71 9-86 2-74 (77)
61 cd01774 Faf1_like2_UBX Faf1 ik 95.7 0.15 3.2E-06 34.8 8.6 76 7-86 2-82 (85)
62 KOG0013 Uncharacterized conser 95.7 0.021 4.7E-07 45.5 4.9 54 23-83 159-212 (231)
63 KOG3249 Uncharacterized conser 95.7 0.0091 2E-07 45.9 2.7 80 33-124 8-88 (181)
64 COG5417 Uncharacterized small 95.6 0.09 1.9E-06 35.7 6.8 69 10-84 7-78 (81)
65 cd01770 p47_UBX p47-like ubiqu 95.4 0.15 3.2E-06 34.2 7.7 70 8-85 3-75 (79)
66 cd01772 SAKS1_UBX SAKS1-like U 95.4 0.22 4.7E-06 33.2 8.4 73 8-86 3-77 (79)
67 COG5227 SMT3 Ubiquitin-like pr 95.1 0.11 2.4E-06 36.5 6.4 67 10-84 25-91 (103)
68 PF11470 TUG-UBL1: GLUT4 regul 94.9 0.079 1.7E-06 34.6 4.8 55 23-84 9-63 (65)
69 cd01771 Faf1_UBX Faf1 UBX doma 94.7 0.53 1.1E-05 31.7 8.8 74 7-86 2-77 (80)
70 PLN02799 Molybdopterin synthas 94.2 0.23 5E-06 32.8 6.0 66 9-86 1-75 (82)
71 PF13019 Telomere_Sde2: Telome 93.6 0.34 7.3E-06 37.1 6.8 51 10-62 1-56 (162)
72 PRK06437 hypothetical protein; 93.6 0.71 1.5E-05 29.9 7.4 49 23-87 13-62 (67)
73 cd01773 Faf1_like1_UBX Faf1 ik 93.3 1.6 3.4E-05 29.8 9.0 73 8-86 4-78 (82)
74 KOG2982 Uncharacterized conser 92.4 0.43 9.3E-06 40.7 6.3 75 12-88 339-416 (418)
75 KOG0012 DNA damage inducible p 92.3 0.2 4.2E-06 42.9 4.1 64 23-91 15-78 (380)
76 PF15044 CLU_N: Mitochondrial 92.2 0.39 8.5E-06 32.0 4.8 58 27-90 1-59 (76)
77 cd06409 PB1_MUG70 The MUG70 pr 92.1 0.41 8.9E-06 33.0 4.9 44 11-57 2-48 (86)
78 PRK08364 sulfur carrier protei 92.1 2.2 4.8E-05 27.6 8.4 60 9-86 4-64 (70)
79 smart00666 PB1 PB1 domain. Pho 92.0 0.56 1.2E-05 30.6 5.3 46 10-59 2-47 (81)
80 cd06406 PB1_P67 A PB1 domain i 91.5 0.7 1.5E-05 31.5 5.4 46 9-61 4-49 (80)
81 PF00564 PB1: PB1 domain; Int 91.0 0.55 1.2E-05 30.7 4.5 48 9-59 1-48 (84)
82 PRK07440 hypothetical protein; 90.8 1.8 3.9E-05 28.2 6.8 62 8-87 3-65 (70)
83 PF14453 ThiS-like: ThiS-like 90.3 2.4 5.2E-05 27.1 6.8 46 24-87 9-54 (57)
84 cd00754 MoaD Ubiquitin domain 90.1 1.9 4E-05 27.8 6.4 52 23-86 18-73 (80)
85 PRK05863 sulfur carrier protei 89.9 1.7 3.7E-05 27.7 6.0 51 24-87 9-60 (65)
86 PRK01777 hypothetical protein; 89.9 3.7 7.9E-05 28.6 8.0 63 9-87 3-75 (95)
87 cd00565 ThiS ThiaminS ubiquiti 89.7 1.5 3.1E-05 27.8 5.5 51 24-86 8-59 (65)
88 PRK05659 sulfur carrier protei 89.0 2.4 5.3E-05 26.6 6.2 52 24-87 9-61 (66)
89 COG2104 ThiS Sulfur transfer p 88.6 3.7 8E-05 26.9 6.9 53 24-88 11-64 (68)
90 TIGR01683 thiS thiamine biosyn 88.5 1.9 4.2E-05 27.2 5.5 52 24-87 7-59 (64)
91 TIGR01682 moaD molybdopterin c 87.1 5 0.00011 26.2 7.0 52 23-86 18-74 (80)
92 PRK06083 sulfur carrier protei 87.1 3.4 7.3E-05 28.1 6.2 52 24-87 27-79 (84)
93 cd06407 PB1_NLP A PB1 domain i 85.5 2.1 4.6E-05 28.9 4.6 34 23-58 12-46 (82)
94 PRK07696 sulfur carrier protei 85.0 5.7 0.00012 25.5 6.3 52 24-87 9-62 (67)
95 cd05992 PB1 The PB1 domain is 84.7 3.9 8.4E-05 26.3 5.5 45 11-59 2-47 (81)
96 PRK08053 sulfur carrier protei 84.0 7.5 0.00016 24.7 6.5 52 24-87 9-61 (66)
97 PF08783 DWNN: DWNN domain; I 82.7 2.7 6E-05 28.1 4.1 71 13-89 2-73 (74)
98 PRK06488 sulfur carrier protei 81.8 8.1 0.00018 24.3 6.0 50 25-87 10-60 (65)
99 PF14732 UAE_UbL: Ubiquitin/SU 78.6 9 0.0002 26.0 5.7 60 25-86 2-66 (87)
100 PF08337 Plexin_cytopl: Plexin 77.6 9.5 0.00021 34.4 7.0 82 7-88 187-289 (539)
101 PRK06944 sulfur carrier protei 76.8 15 0.00033 22.8 6.4 51 24-87 9-60 (65)
102 PF14451 Ub-Mut7C: Mut7-C ubiq 76.4 17 0.00037 24.5 6.5 49 23-87 25-74 (81)
103 PRK11840 bifunctional sulfur c 75.1 12 0.00026 31.8 6.5 53 24-88 9-62 (326)
104 TIGR01687 moaD_arch MoaD famil 75.0 21 0.00045 23.5 7.1 53 23-86 18-81 (88)
105 PF02597 ThiS: ThiS family; I 74.9 6.1 0.00013 25.0 3.9 55 23-86 14-70 (77)
106 PF14836 Ubiquitin_3: Ubiquiti 73.4 18 0.00039 25.0 6.1 59 23-88 16-79 (88)
107 cd06398 PB1_Joka2 The PB1 doma 73.0 9.7 0.00021 26.2 4.7 45 11-59 2-52 (91)
108 cd06411 PB1_p51 The PB1 domain 71.2 7.6 0.00017 26.3 3.7 36 23-60 9-44 (78)
109 PF12754 Blt1: Cell-cycle cont 70.6 1.4 3E-05 37.0 0.0 59 8-67 77-153 (309)
110 KOG4250 TANK binding protein k 69.9 16 0.00035 34.1 6.6 52 10-63 314-365 (732)
111 PF10209 DUF2340: Uncharacteri 69.5 14 0.0003 27.1 5.1 62 26-87 21-107 (122)
112 cd06396 PB1_NBR1 The PB1 domai 69.0 13 0.00027 25.4 4.5 35 11-49 2-38 (81)
113 KOG2086 Protein tyrosine phosp 68.6 19 0.00041 31.2 6.4 68 8-81 304-373 (380)
114 smart00295 B41 Band 4.1 homolo 68.2 15 0.00033 27.2 5.3 40 8-50 2-41 (207)
115 PRK11130 moaD molybdopterin sy 67.9 31 0.00068 22.6 6.7 48 25-84 19-72 (81)
116 COG5100 NPL4 Nuclear pore prot 67.8 30 0.00065 30.7 7.5 72 10-88 1-78 (571)
117 cd06408 PB1_NoxR The PB1 domai 67.6 19 0.00041 24.8 5.1 34 23-59 14-47 (86)
118 PF11834 DUF3354: Domain of un 65.9 7 0.00015 25.8 2.6 47 25-86 22-68 (69)
119 cd06410 PB1_UP2 Uncharacterize 65.5 20 0.00044 24.9 5.1 40 14-57 17-56 (97)
120 cd01666 TGS_DRG_C TGS_DRG_C: 63.9 21 0.00045 23.7 4.7 67 10-86 2-74 (75)
121 TIGR02958 sec_mycoba_snm4 secr 62.2 62 0.0013 28.4 8.6 76 10-94 3-86 (452)
122 PF11620 GABP-alpha: GA-bindin 60.7 20 0.00044 24.8 4.2 66 24-96 6-73 (88)
123 cd01760 RBD Ubiquitin-like dom 59.9 34 0.00073 22.5 5.1 44 14-60 4-47 (72)
124 KOG2561 Adaptor protein NUB1, 56.4 3.7 8E-05 36.5 0.0 58 25-89 54-111 (568)
125 PF00794 PI3K_rbd: PI3-kinase 56.4 35 0.00075 23.4 5.0 36 7-42 14-49 (106)
126 smart00455 RBD Raf-like Ras-bi 52.7 53 0.0011 21.3 5.1 41 16-59 6-46 (70)
127 cd06397 PB1_UP1 Uncharacterize 51.1 42 0.00091 23.0 4.5 45 11-59 2-46 (82)
128 smart00144 PI3K_rbd PI3-kinase 49.9 49 0.0011 23.1 4.9 36 7-42 15-50 (108)
129 cd01775 CYR1_RA Ubiquitin doma 49.7 83 0.0018 22.2 5.9 37 12-51 5-41 (97)
130 PF14533 USP7_C2: Ubiquitin-sp 49.0 66 0.0014 25.1 6.0 38 23-62 36-78 (213)
131 PF12436 USP7_ICP0_bdg: ICP0-b 48.0 44 0.00095 26.7 5.0 46 9-56 176-223 (249)
132 cd01787 GRB7_RA RA (RAS-associ 46.8 60 0.0013 22.3 4.8 39 11-52 4-42 (85)
133 PF03671 Ufm1: Ubiquitin fold 45.7 92 0.002 21.0 5.6 62 16-84 10-73 (76)
134 PF00788 RA: Ras association ( 45.6 65 0.0014 20.7 4.8 45 9-55 4-51 (93)
135 PF09379 FERM_N: FERM N-termin 42.7 86 0.0019 19.8 5.9 41 14-57 1-42 (80)
136 KOG3439 Protein conjugation fa 42.3 98 0.0021 22.5 5.5 54 8-63 29-85 (116)
137 smart00314 RA Ras association 41.8 87 0.0019 20.5 5.0 40 9-50 4-43 (90)
138 PF02192 PI3K_p85B: PI3-kinase 41.3 32 0.0007 23.1 2.8 20 23-42 2-21 (78)
139 KOG0007 Splicing factor 3a, su 41.1 13 0.00029 31.1 1.0 41 23-65 295-336 (341)
140 cd01768 RA RA (Ras-associating 40.0 1E+02 0.0022 19.9 5.3 32 23-56 15-48 (87)
141 PF02017 CIDE-N: CIDE-N domain 39.9 1.2E+02 0.0025 20.5 6.5 49 12-65 5-55 (78)
142 PF10407 Cytokin_check_N: Cdc1 39.8 70 0.0015 21.3 4.2 32 23-56 5-37 (73)
143 PRK10872 relA (p)ppGpp synthet 39.3 1.3E+02 0.0028 28.4 7.2 62 11-89 405-467 (743)
144 PF00276 Ribosomal_L23: Riboso 39.1 43 0.00093 22.8 3.2 39 23-63 23-62 (91)
145 PTZ00380 microtubule-associate 36.2 39 0.00084 24.7 2.7 35 26-63 46-80 (121)
146 PF09662 Phenyl_P_gamma: Pheny 36.0 48 0.001 22.7 2.9 48 6-62 16-63 (84)
147 cd01782 AF6_RA_repeat1 Ubiquit 35.7 1E+02 0.0022 22.3 4.7 41 7-49 21-62 (112)
148 PRK05738 rplW 50S ribosomal pr 35.2 96 0.0021 21.2 4.4 38 23-62 23-61 (92)
149 PF02824 TGS: TGS domain; Int 35.0 95 0.0021 19.2 4.1 58 12-86 1-59 (60)
150 PF08825 E2_bind: E2 binding d 33.8 71 0.0015 21.6 3.6 58 25-86 1-68 (84)
151 smart00143 PI3K_p85B PI3-kinas 33.1 46 0.001 22.5 2.5 20 23-42 2-21 (78)
152 PF01502 PRA-CH: Phosphoribosy 33.0 40 0.00086 22.6 2.1 60 34-98 8-68 (75)
153 smart00266 CAD Domains present 31.1 1.6E+02 0.0036 19.6 6.7 49 31-88 19-69 (74)
154 TIGR00691 spoT_relA (p)ppGpp s 30.4 2.3E+02 0.0051 26.2 7.3 62 10-88 360-422 (683)
155 KOG2507 Ubiquitin regulatory p 30.3 1.2E+02 0.0026 27.1 5.1 82 8-94 313-396 (506)
156 cd01776 Rin1_RA Ubiquitin doma 29.9 1E+02 0.0022 21.3 3.8 32 23-56 16-48 (87)
157 PF07929 PRiA4_ORF3: Plasmid p 29.7 90 0.002 23.3 3.9 43 9-53 4-48 (179)
158 cd01764 Urm1 Urm1-like ubuitin 29.7 1.2E+02 0.0027 20.6 4.2 57 26-86 24-87 (94)
159 cd02639 R3H_RRM R3H domain of 28.3 38 0.00083 21.6 1.4 29 105-134 15-43 (60)
160 cd06404 PB1_aPKC PB1 domain is 28.3 1.1E+02 0.0024 20.9 3.7 43 13-57 2-45 (83)
161 PF14533 USP7_C2: Ubiquitin-sp 28.2 42 0.00092 26.2 1.9 36 23-60 135-175 (213)
162 cd01615 CIDE_N CIDE_N domain, 27.6 2E+02 0.0043 19.4 6.8 55 24-88 15-71 (78)
163 KOG4361 BCL2-associated athano 27.4 44 0.00095 28.6 2.0 74 9-90 61-139 (344)
164 PF11305 DUF3107: Protein of u 27.0 1.5E+02 0.0032 19.8 4.1 23 23-45 12-34 (74)
165 PF12436 USP7_ICP0_bdg: ICP0-b 26.4 1.4E+02 0.003 23.8 4.6 77 7-90 66-153 (249)
166 PF03658 Ub-RnfH: RnfH family 26.0 2.2E+02 0.0047 19.4 6.6 67 10-87 1-72 (84)
167 PRK10113 cell division modulat 24.2 37 0.00081 22.7 0.8 16 110-125 58-73 (80)
168 cd01783 DAGK_delta_RA Ubiquiti 23.7 2E+02 0.0044 20.2 4.5 42 7-50 2-44 (97)
169 cd01612 APG12_C Ubiquitin-like 23.0 2.5E+02 0.0054 19.0 6.2 50 10-61 2-54 (87)
170 PF11069 DUF2870: Protein of u 22.7 1.3E+02 0.0029 21.2 3.4 33 54-91 3-36 (98)
171 PF06234 TmoB: Toluene-4-monoo 22.4 2.7E+02 0.0058 19.1 8.2 69 9-84 3-79 (85)
172 CHL00030 rpl23 ribosomal prote 22.4 1.7E+02 0.0037 20.2 3.9 36 23-60 22-58 (93)
173 cd01817 RGS12_RBD Ubiquitin do 22.3 2.5E+02 0.0054 18.7 4.6 41 18-61 8-48 (73)
174 PF12911 OppC_N: N-terminal TM 22.2 55 0.0012 19.6 1.2 17 116-132 1-17 (56)
175 PF02991 Atg8: Autophagy prote 21.8 1.5E+02 0.0033 20.8 3.6 38 25-64 37-75 (104)
176 KOG3391 Transcriptional co-rep 21.7 97 0.0021 23.4 2.6 24 68-91 115-139 (151)
177 COG5222 Uncharacterized conser 21.2 5E+02 0.011 22.3 7.0 54 8-63 3-57 (427)
178 COG0089 RplW Ribosomal protein 21.0 1.9E+02 0.0041 20.2 3.8 36 23-60 24-60 (94)
179 COG2258 Uncharacterized protei 20.4 68 0.0015 25.6 1.7 52 77-128 150-207 (210)
180 KOG4248 Ubiquitin-like protein 20.4 60 0.0013 31.8 1.6 58 26-90 340-398 (1143)
No 1
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.78 E-value=7.2e-19 Score=117.52 Aligned_cols=70 Identities=17% Similarity=0.146 Sum_probs=65.5
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 9 ~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
||+|+|++..|+. +.+++++++||++||++|++ ..|+|+++|||||.|+.|+|+.+ |++|||++|++|.+
T Consensus 1 ~~~i~vkt~~Gk~-~~~~v~~~~TV~~LK~~I~~--~~~~~~~~qrLi~~Gk~L~D~~t-----L~~ygi~~~stv~l 70 (73)
T cd01791 1 MIEVVCNDRLGKK-VRVKCNPDDTIGDLKKLIAA--QTGTRPEKIVLKKWYTIFKDHIS-----LGDYEIHDGMNLEL 70 (73)
T ss_pred CEEEEEECCCCCE-EEEEeCCCCcHHHHHHHHHH--HhCCChHHEEEEeCCcCCCCCCC-----HHHcCCCCCCEEEE
Confidence 6999999998866 88999999999999999998 88999999999999999999888 99999999999943
No 2
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.77 E-value=1.1e-18 Score=115.75 Aligned_cols=73 Identities=29% Similarity=0.404 Sum_probs=67.0
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK 89 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~~ 89 (135)
|+|+||+.+|.. +.++|++++||++||++|++ ++|+|+++|||+|+|+.|.|+.+ |++|+|++|++|.++..
T Consensus 1 m~i~vk~~~G~~-~~l~v~~~~tV~~lK~~i~~--~~gi~~~~q~L~~~G~~L~d~~~-----L~~~~i~~~~~l~l~~~ 72 (74)
T cd01807 1 MFLTVKLLQGRE-CSLQVSEKESVSTLKKLVSE--HLNVPEEQQRLLFKGKALADDKR-----LSDYSIGPNAKLNLVVR 72 (74)
T ss_pred CEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCCCHHHeEEEECCEECCCCCC-----HHHCCCCCCCEEEEEEc
Confidence 789999999865 88999999999999999999 99999999999999999999998 99999999999955444
Q ss_pred C
Q 032742 90 P 90 (135)
Q Consensus 90 p 90 (135)
|
T Consensus 73 ~ 73 (74)
T cd01807 73 P 73 (74)
T ss_pred C
Confidence 3
No 3
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.76 E-value=2.2e-18 Score=116.28 Aligned_cols=76 Identities=25% Similarity=0.337 Sum_probs=67.5
Q ss_pred eEEEEEeCCCCCcEEEE-ecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032742 10 VEITVKTIGPAPPSRLS-VSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~-v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (135)
|+|+||+.+|...+.++ ++++.||++||++|++ .+|+|+++|||+|+|+.|+|+.+ |++|+|++|++|.+..
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~--~~gi~~~~QrLi~~Gk~L~D~~t-----L~~y~i~~~~~i~l~~ 73 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQE--LFNVEPECQRLFYRGKQMEDGHT-----LFDYNVGLNDIIQLLV 73 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHH--HhCCCHHHeEEEeCCEECCCCCC-----HHHcCCCCCCEEEEEE
Confidence 78999999997534675 7899999999999999 99999999999999999999999 9999999999996665
Q ss_pred cCCC
Q 032742 89 KPKP 92 (135)
Q Consensus 89 ~p~~ 92 (135)
.+.|
T Consensus 74 ~~~~ 77 (78)
T cd01797 74 RQDP 77 (78)
T ss_pred ecCC
Confidence 5543
No 4
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.75 E-value=8.1e-18 Score=111.48 Aligned_cols=73 Identities=26% Similarity=0.398 Sum_probs=66.6
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCC--CCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE-E
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHL--PIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI-A 86 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~i--p~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIl-v 86 (135)
|+|+||+.++.. +.++++++.||++||++|++ .+|+ |+++|||+|+|+.|.|+.+ |++|++++|++|+ +
T Consensus 1 m~i~vk~~~g~~-~~l~v~~~~TV~~lK~~i~~--~~~i~~~~~~q~L~~~G~~L~d~~~-----L~~~~i~~~~~i~~~ 72 (77)
T cd01805 1 MKITFKTLKQQT-FPIEVDPDDTVAELKEKIEE--EKGCDYPPEQQKLIYSGKILKDDTT-----LEEYKIDEKDFVVVM 72 (77)
T ss_pred CEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--hhCCCCChhHeEEEECCEEccCCCC-----HHHcCCCCCCEEEEE
Confidence 789999999865 88999999999999999999 9998 9999999999999999888 9999999999994 4
Q ss_pred EecC
Q 032742 87 AVKP 90 (135)
Q Consensus 87 ~~~p 90 (135)
..+|
T Consensus 73 ~~~~ 76 (77)
T cd01805 73 VSKP 76 (77)
T ss_pred EecC
Confidence 4444
No 5
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.73 E-value=1.1e-17 Score=112.57 Aligned_cols=71 Identities=23% Similarity=0.279 Sum_probs=65.2
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032742 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (135)
Q Consensus 9 ~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (135)
.|+|+||+..|.. +.+++++++||++||++|++ +.++++++|||+|+|+.|.|+ + |++|||++|++|+++.
T Consensus 1 ~m~I~Vk~~~G~~-~~l~v~~~~TV~~LK~~I~~--~~~~~~~~qrL~~~Gk~L~d~-~-----L~~~gi~~~~~i~l~~ 71 (78)
T cd01804 1 PMNLNIHSTTGTR-FDLSVPPDETVEGLKKRISQ--RLKVPKERLALLHRETRLSSG-K-----LQDLGLGDGSKLTLVP 71 (78)
T ss_pred CeEEEEEECCCCE-EEEEECCcCHHHHHHHHHHH--HhCCChHHEEEEECCcCCCCC-c-----HHHcCCCCCCEEEEEe
Confidence 3899999998866 88999999999999999999 889999999999999999987 8 9999999999995443
No 6
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.71 E-value=4.2e-17 Score=108.20 Aligned_cols=69 Identities=17% Similarity=0.234 Sum_probs=62.9
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEEe
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAAV 88 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv~~ 88 (135)
|+|+||+. ..+.++|++++||++||++|++ ..|+|+++|||+|.|+.|.|+.+ |++|+|++++|| ++..
T Consensus 1 mqi~vk~~---~~~~l~v~~~~tV~~lK~~i~~--~~gip~~~q~Li~~Gk~L~D~~t-----L~~~~i~~~~tl~l~~~ 70 (74)
T cd01793 1 MQLFVRAQ---NTHTLEVTGQETVSDIKAHVAG--LEGIDVEDQVLLLAGVPLEDDAT-----LGQCGVEELCTLEVAGR 70 (74)
T ss_pred CEEEEECC---CEEEEEECCcCcHHHHHHHHHh--hhCCCHHHEEEEECCeECCCCCC-----HHHcCCCCCCEEEEEEe
Confidence 78999984 2378999999999999999999 99999999999999999999999 999999999999 5443
No 7
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.71 E-value=4.9e-17 Score=115.17 Aligned_cols=73 Identities=18% Similarity=0.242 Sum_probs=68.1
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-l 85 (135)
.+.|+|+||+.+|.. +.+++++++||++||++|++ ..|+|+++|||+|+|+.|+|+.+ |++|+|++|++| +
T Consensus 25 ~~~M~I~Vk~l~G~~-~~leV~~~~TV~~lK~kI~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~dy~I~~~stL~l 96 (103)
T cd01802 25 YDTMELFIETLTGTC-FELRVSPFETVISVKAKIQR--LEGIPVAQQHLIWNNMELEDEYC-----LNDYNISEGCTLKL 96 (103)
T ss_pred CCCEEEEEEcCCCCE-EEEEeCCCCcHHHHHHHHHH--HhCCChHHEEEEECCEECCCCCc-----HHHcCCCCCCEEEE
Confidence 457999999999976 88999999999999999999 99999999999999999999998 999999999999 4
Q ss_pred EE
Q 032742 86 AA 87 (135)
Q Consensus 86 v~ 87 (135)
++
T Consensus 97 ~~ 98 (103)
T cd01802 97 VL 98 (103)
T ss_pred EE
Confidence 44
No 8
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.70 E-value=5.1e-17 Score=110.48 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=61.8
Q ss_pred ceEEEEEeCCCCC-cEEEEecCCCcHHHHHHHHHhccCC--CCCCCceEEEecCeecCCCCCCCCCCccccC--CCCCCE
Q 032742 9 SVEITVKTIGPAP-PSRLSVSSPIKVRDLRKLIATSSAN--HLPIENLRLVFRGKVLDDTQDDDDRDDVYLQ--LSNGDS 83 (135)
Q Consensus 9 ~m~I~VKt~~~~~-~~~i~v~~~~TV~dLK~~Ia~~~~~--~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~--I~dG~t 83 (135)
.|+|+||+++++. .+.+++++++||++||++|++ .. .+++++|||||+||.|+|+.+ |++|. +.+|.|
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~--~~~~~~~~~~QrLIy~GKiLkD~~t-----L~~~~~~~~~~~t 73 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSR--VYPSKPLEQDQRLIYSGKLLPDHLK-----LRDVLRKQDEYHM 73 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHH--hcCCCCChhHeEEEEcCeeccchhh-----HHHHhhcccCCce
Confidence 3789999999976 234555899999999999998 55 366899999999999999998 99996 999999
Q ss_pred E-EEE
Q 032742 84 V-IAA 87 (135)
Q Consensus 84 I-lv~ 87 (135)
| ||+
T Consensus 74 iHLV~ 78 (79)
T cd01790 74 VHLVC 78 (79)
T ss_pred EEEEe
Confidence 9 665
No 9
>PTZ00044 ubiquitin; Provisional
Probab=99.69 E-value=9.5e-17 Score=106.22 Aligned_cols=71 Identities=14% Similarity=0.328 Sum_probs=65.9
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (135)
|+|+||+.+|.. +.+++++++||++||++|++ .+|+|+++|||+|+|+.|.|+.+ |++|++++|++|.+..
T Consensus 1 m~i~vk~~~G~~-~~l~v~~~~tv~~lK~~i~~--~~gi~~~~q~L~~~g~~L~d~~~-----l~~~~i~~~~~i~l~~ 71 (76)
T PTZ00044 1 MQILIKTLTGKK-QSFNFEPDNTVQQVKMALQE--KEGIDVKQIRLIYSGKQMSDDLK-----LSDYKVVPGSTIHMVL 71 (76)
T ss_pred CEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCCCHHHeEEEECCEEccCCCc-----HHHcCCCCCCEEEEEE
Confidence 789999999976 88999999999999999999 99999999999999999999888 9999999999994443
No 10
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.69 E-value=6.5e-17 Score=107.07 Aligned_cols=69 Identities=26% Similarity=0.241 Sum_probs=63.2
Q ss_pred EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032742 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (135)
Q Consensus 12 I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (135)
++||..+|.. +.+++++++||++||++|++ ..|+|+++|||+|+|+.|+|+.+ |++|+|++|++|.+++
T Consensus 1 ~~vk~~~G~~-~~l~v~~~~TV~~lK~~I~~--~~gi~~~~q~Li~~G~~L~D~~~-----l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 1 LKVRLSTGKD-VKLSVSSKDTVGQLKKQLQA--AEGVDPCCQRWFFSGKLLTDKTR-----LQETKIQKDYVVQVIV 69 (70)
T ss_pred CeEEcCCCCE-EEEEECCcChHHHHHHHHHH--HhCCCHHHeEEEECCeECCCCCC-----HHHcCCCCCCEEEEEe
Confidence 4688888866 89999999999999999998 99999999999999999999998 9999999999995543
No 11
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.69 E-value=8.5e-17 Score=108.40 Aligned_cols=71 Identities=27% Similarity=0.327 Sum_probs=65.6
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEE--EecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRL--VFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRL--I~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (135)
|+|+||+.+|.. +.++++++.||++||++|++ ..++|+++||| +|.|+.|.|+.+ |++|++++|++|++.
T Consensus 3 ~~i~Vk~~~G~~-~~~~v~~~~TV~~lK~~I~~--~~~i~~~~qrL~~~~~G~~L~D~~t-----L~~~gi~~gs~l~l~ 74 (80)
T cd01792 3 WDLKVKMLGGNE-FLVSLRDSMTVSELKQQIAQ--KIGVPAFQQRLAHLDSREVLQDGVP-----LVSQGLGPGSTVLLV 74 (80)
T ss_pred eEEEEEeCCCCE-EEEEcCCCCcHHHHHHHHHH--HhCCCHHHEEEEeccCCCCCCCCCC-----HHHcCCCCCCEEEEE
Confidence 899999999866 88999999999999999999 88999999999 999999999988 999999999999444
Q ss_pred e
Q 032742 88 V 88 (135)
Q Consensus 88 ~ 88 (135)
.
T Consensus 75 ~ 75 (80)
T cd01792 75 V 75 (80)
T ss_pred E
Confidence 3
No 12
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.68 E-value=1.1e-16 Score=106.18 Aligned_cols=68 Identities=19% Similarity=0.254 Sum_probs=63.5
Q ss_pred EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032742 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (135)
Q Consensus 12 I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv~ 87 (135)
|+||+..++. +.+++++++||++||++|++ ..|+|+++|+|+|+|+.|.|+.+ |++|+|++|++| ++.
T Consensus 1 i~vk~~~g~~-~~l~v~~~~tV~~lK~~I~~--~~gi~~~~q~L~~~G~~L~D~~t-----L~~~~i~~~~tl~l~~ 69 (74)
T cd01810 1 ILVRNDKGRS-SIYEVQLTQTVATLKQQVSQ--RERVQADQFWLSFEGRPMEDEHP-----LGEYGLKPGCTVFMNL 69 (74)
T ss_pred CEEECCCCCE-EEEEECCcChHHHHHHHHHH--HhCCCHHHeEEEECCEECCCCCC-----HHHcCCCCCCEEEEEE
Confidence 6899999976 88999999999999999999 99999999999999999999988 999999999999 443
No 13
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.68 E-value=2.2e-16 Score=103.72 Aligned_cols=70 Identities=20% Similarity=0.377 Sum_probs=65.1
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (135)
|+|+||+.+|.. +.++++++.||++||++|++ .+++|+++|||+|.|+.|.|+.+ |++|++++|++|.+.
T Consensus 1 m~i~v~~~~g~~-~~~~v~~~~tv~~lK~~i~~--~~g~~~~~qrL~~~g~~L~d~~t-----l~~~~i~~g~~i~l~ 70 (76)
T cd01806 1 MLIKVKTLTGKE-IEIDIEPTDKVERIKERVEE--KEGIPPQQQRLIYSGKQMNDDKT-----AADYKLEGGSVLHLV 70 (76)
T ss_pred CEEEEEeCCCCE-EEEEECCCCCHHHHHHHHhH--hhCCChhhEEEEECCeEccCCCC-----HHHcCCCCCCEEEEE
Confidence 789999998866 88999999999999999999 99999999999999999998888 999999999999443
No 14
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.67 E-value=1.2e-16 Score=104.67 Aligned_cols=67 Identities=22% Similarity=0.344 Sum_probs=62.8
Q ss_pred EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 12 I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
|+||+..|.. +.+++++++||++||++|++ +.|+|+++|||+|+|+.|.|+.+ |++|+|++|++|.+
T Consensus 1 i~vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~gi~~~~q~Li~~G~~L~d~~~-----l~~~~i~~~stl~l 67 (70)
T cd01798 1 VYVRTNTGHT-FPVEVDPDTDIKQLKEVVAK--RQGVPPDQLRVIFAGKELRNTTT-----IQECDLGQQSILHA 67 (70)
T ss_pred CEEEcCCCCE-EEEEECCCChHHHHHHHHHH--HHCCCHHHeEEEECCeECCCCCc-----HHHcCCCCCCEEEE
Confidence 5789998876 88999999999999999999 99999999999999999999998 99999999999944
No 15
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.67 E-value=2.6e-16 Score=102.38 Aligned_cols=70 Identities=30% Similarity=0.528 Sum_probs=65.2
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (135)
|+|+||+..+.. +.++++++.||++||++|++ .+|+|+++|||+|+|+.|.|+.+ |++|++++|++|.+.
T Consensus 1 i~i~vk~~~g~~-~~~~v~~~~tv~~lK~~i~~--~~gi~~~~q~L~~~g~~L~d~~~-----L~~~~i~~~~~l~l~ 70 (72)
T cd01809 1 IEIKVKTLDSQT-HTFTVEEEITVLDLKEKIAE--EVGIPVEQQRLIYSGRVLKDDET-----LSEYKVEDGHTIHLV 70 (72)
T ss_pred CEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCcCHHHeEEEECCEECCCcCc-----HHHCCCCCCCEEEEE
Confidence 789999998866 88999999999999999999 99999999999999999999888 999999999999443
No 16
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.67 E-value=1.6e-16 Score=106.20 Aligned_cols=70 Identities=24% Similarity=0.236 Sum_probs=63.6
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe---cCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF---RGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~---~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
|.|+||+.+.. +.+++++++||++||++|++ .+++|+++|||+| +|+.+.|+.+ |++|+|++|++|++
T Consensus 1 ~~i~vk~~g~~--~~v~v~~~~Tv~~lK~~i~~--~tgvp~~~QKLi~~~~~Gk~l~D~~~-----L~~~~i~~g~~i~l 71 (74)
T cd01813 1 VPVIVKWGGQE--YSVTTLSEDTVLDLKQFIKT--LTGVLPERQKLLGLKVKGKPAEDDVK-----ISALKLKPNTKIMM 71 (74)
T ss_pred CEEEEEECCEE--EEEEECCCCCHHHHHHHHHH--HHCCCHHHEEEEeecccCCcCCCCcC-----HHHcCCCCCCEEEE
Confidence 57899995553 78999999999999999999 9999999999996 9999999888 99999999999977
Q ss_pred Ee
Q 032742 87 AV 88 (135)
Q Consensus 87 ~~ 88 (135)
++
T Consensus 72 mG 73 (74)
T cd01813 72 MG 73 (74)
T ss_pred Ee
Confidence 65
No 17
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.67 E-value=2.4e-16 Score=103.63 Aligned_cols=68 Identities=25% Similarity=0.400 Sum_probs=62.9
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
|+|+||+..+. ..+++++++||++||++|++ ..|+++++|||+|.|+.|.|+.+ |++|++++|++|.+
T Consensus 1 ~~i~vk~~~g~--~~l~v~~~~TV~~lK~~I~~--~~~i~~~~~~Li~~Gk~L~d~~t-----L~~~~i~~~stl~l 68 (71)
T cd01808 1 IKVTVKTPKDK--EEIEIAEDASVKDFKEAVSK--KFKANQEQLVLIFAGKILKDTDT-----LTQHNIKDGLTVHL 68 (71)
T ss_pred CEEEEEcCCCC--EEEEECCCChHHHHHHHHHH--HhCCCHHHEEEEECCeEcCCCCc-----HHHcCCCCCCEEEE
Confidence 57999999884 58999999999999999999 88999999999999999999988 99999999999944
No 18
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.66 E-value=1.8e-16 Score=102.88 Aligned_cols=68 Identities=31% Similarity=0.473 Sum_probs=62.5
Q ss_pred EeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEecC
Q 032742 15 KTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVKP 90 (135)
Q Consensus 15 Kt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~~p 90 (135)
|+.+|+. +.+++++++||.+||++|++ .+++|+++|+|+|+|+.|.|+.+ |.+|+|++|++|++..+|
T Consensus 1 k~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~~~~~~~~~L~~~G~~L~d~~t-----L~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKT-FTLEVDPDDTVADLKQKIAE--ETGIPPEQQRLIYNGKELDDDKT-----LSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEE-EEEEEETTSBHHHHHHHHHH--HHTSTGGGEEEEETTEEESTTSB-----TGGGTTSTTEEEEEEESS
T ss_pred CCCCCcE-EEEEECCCCCHHHhhhhccc--ccccccccceeeeeeecccCcCc-----HHHcCCCCCCEEEEEEec
Confidence 5677764 89999999999999999999 99999999999999999999888 999999999999777665
No 19
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.66 E-value=2.3e-16 Score=102.68 Aligned_cols=70 Identities=26% Similarity=0.380 Sum_probs=63.5
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (135)
|+|+||+. +.. +.+++++++||++||++|++ .+|+|+++|||+|+|+.|.|+.+ |++|++++|++|++++
T Consensus 1 i~i~vk~~-g~~-~~i~v~~~~tv~~lK~~i~~--~~gi~~~~q~L~~~g~~l~d~~~-----L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GES-HDLSISSQATFGDLKKMLAP--VTGVEPRDQKLIFKGKERDDAET-----LDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEE-EEEEECCCCcHHHHHHHHHH--hhCCChHHeEEeeCCcccCccCc-----HHHcCCCCCCEEEEec
Confidence 68999996 434 78999999999999999999 99999999999999999998888 9999999999996654
No 20
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.66 E-value=3.7e-16 Score=102.68 Aligned_cols=71 Identities=21% Similarity=0.347 Sum_probs=65.6
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (135)
|+|+||+.+|.. +.+++++++||++||++|++ .+++|+++|||+|.|+.|.|+.+ |++|++++|++|.+..
T Consensus 1 m~i~v~~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~g~~~~~q~L~~~g~~L~d~~~-----L~~~~i~~~~~i~l~~ 71 (76)
T cd01803 1 MQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVL 71 (76)
T ss_pred CEEEEEcCCCCE-EEEEECCcCcHHHHHHHHHH--HhCCCHHHeEEEECCEECCCCCc-----HHHcCCCCCCEEEEEE
Confidence 789999998866 88999999999999999999 99999999999999999999888 9999999999994443
No 21
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.65 E-value=3.3e-16 Score=103.49 Aligned_cols=67 Identities=22% Similarity=0.393 Sum_probs=60.9
Q ss_pred EEEEeC-CCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCC-CCCCCCCccccCCCCCCEEEE
Q 032742 12 ITVKTI-GPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDT-QDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 12 I~VKt~-~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~-~t~d~~~L~~~~I~dG~tIlv 86 (135)
|+||+. ++.. +.+++++++||++||++|++ .+|+|+++|||+|+|+.|.|+ .+ |++|+|++|++|++
T Consensus 1 l~v~~~~~g~~-~~l~v~~~~TV~~lK~~I~~--~~gip~~~q~Li~~Gk~L~D~~~~-----L~~~gi~~~~~l~l 69 (71)
T cd01796 1 ITVYTARSETT-FSLDVDPDLELENFKALCEA--ESGIPASQQQLIYNGRELVDNKRL-----LALYGVKDGDLVVL 69 (71)
T ss_pred CEEEECCCCCE-EEEEECCcCCHHHHHHHHHH--HhCCCHHHeEEEECCeEccCCccc-----HHHcCCCCCCEEEE
Confidence 578998 6654 88999999999999999999 999999999999999999887 46 99999999999965
No 22
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.58 E-value=4.8e-15 Score=125.54 Aligned_cols=74 Identities=23% Similarity=0.449 Sum_probs=67.4
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCC---CCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANH---LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~---ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-l 85 (135)
|+|+||+.+++. +.|+|++++||.+||++|++ ..| +++++|||||+||.|+|+.+ |++|+|++|++| +
T Consensus 1 MkItVKtl~g~~-~~IeV~~~~TV~dLK~kI~~--~~g~~~ip~~~QkLIy~GkiL~Dd~t-----L~dy~I~e~~~Ivv 72 (378)
T TIGR00601 1 MTLTFKTLQQQK-FKIDMEPDETVKELKEKIEA--EQGKDAYPVAQQKLIYSGKILSDDKT-----VREYKIKEKDFVVV 72 (378)
T ss_pred CEEEEEeCCCCE-EEEEeCCcChHHHHHHHHHH--hhCCCCCChhHeEEEECCEECCCCCc-----HHHcCCCCCCEEEE
Confidence 789999999976 89999999999999999998 888 99999999999999999988 999999999999 4
Q ss_pred EEecCC
Q 032742 86 AAVKPK 91 (135)
Q Consensus 86 v~~~p~ 91 (135)
++.+++
T Consensus 73 mv~k~k 78 (378)
T TIGR00601 73 MVSKPK 78 (378)
T ss_pred EeccCC
Confidence 445543
No 23
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.54 E-value=1.6e-14 Score=96.35 Aligned_cols=62 Identities=19% Similarity=0.307 Sum_probs=56.7
Q ss_pred cEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEecC
Q 032742 22 PSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVKP 90 (135)
Q Consensus 22 ~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~~p 90 (135)
.+.+++++++||++||++|++ .+|+|+++|+|+|+|+.|+|+.+ |++|+|++|++|.+...+
T Consensus 9 ~~~l~v~~~~TV~~lK~~i~~--~~gip~~~q~L~~~G~~L~d~~t-----L~~~~i~~g~~l~v~~~~ 70 (76)
T cd01800 9 MLNFTLQLSDPVSVLKVKIHE--ETGMPAGKQKLQYEGIFIKDSNS-----LAYYNLANGTIIHLQLKE 70 (76)
T ss_pred EEEEEECCCCcHHHHHHHHHH--HHCCCHHHEEEEECCEEcCCCCc-----HHHcCCCCCCEEEEEEec
Confidence 378999999999999999999 99999999999999999999888 999999999999555443
No 24
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.54 E-value=1.9e-14 Score=90.79 Aligned_cols=64 Identities=33% Similarity=0.581 Sum_probs=59.4
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCC
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGD 82 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~ 82 (135)
|+|+||+.+ .. +.++++++.||++||++|+. .+++|+++|||+|.|+.|.|+.+ |++|++++|+
T Consensus 1 ~~i~vk~~~-~~-~~~~v~~~~tv~~lk~~i~~--~~~~~~~~~~L~~~g~~L~d~~t-----L~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GT-ITLEVKPSDTVSELKEKIAE--LTGIPVEQQRLIYKGKVLEDDRT-----LADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ce-EEEEECCCCcHHHHHHHHHH--HHCCCHHHEEEEECCEECCCCCC-----HHHcCCcCCC
Confidence 689999998 44 78999999999999999999 99999999999999999998888 9999999985
No 25
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.52 E-value=9.1e-14 Score=95.18 Aligned_cols=77 Identities=22% Similarity=0.401 Sum_probs=70.5
Q ss_pred CCCCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCC
Q 032742 3 MGEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGD 82 (135)
Q Consensus 3 ~~~~~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~ 82 (135)
.++++..|+|+|++..+.. +.+.|.+++|+..||+++++ +.|+|+++|||+|.|+.|.++.| +.+|++++|+
T Consensus 5 ~~~~~~~i~I~v~~~~g~~-~~~~v~~~~~l~~l~~~y~~--~~gi~~~~~rf~f~G~~L~~~~T-----~~~l~m~d~d 76 (87)
T cd01763 5 KGEISEHINLKVKGQDGNE-VFFKIKRSTPLKKLMEAYCQ--RQGLSMNSVRFLFDGQRIRDNQT-----PDDLGMEDGD 76 (87)
T ss_pred CCCCCCeEEEEEECCCCCE-EEEEEcCCCHHHHHHHHHHH--HhCCCccceEEEECCeECCCCCC-----HHHcCCCCCC
Confidence 3456788999999998866 88999999999999999999 99999999999999999999999 9999999999
Q ss_pred EE-EEE
Q 032742 83 SV-IAA 87 (135)
Q Consensus 83 tI-lv~ 87 (135)
+| ++.
T Consensus 77 ~I~v~l 82 (87)
T cd01763 77 EIEVML 82 (87)
T ss_pred EEEEEE
Confidence 99 544
No 26
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.49 E-value=5e-14 Score=121.67 Aligned_cols=73 Identities=26% Similarity=0.387 Sum_probs=67.2
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032742 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (135)
Q Consensus 9 ~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv~ 87 (135)
.+.|+||+.+.+ +.+.|..++||.+||+.|+. .+++++++|+|||.||+|+|+++ |..|+|+||.|| +|+
T Consensus 15 ~irV~Vkt~~dk--~~~~V~~~ssV~qlKE~I~~--~f~a~~dqlvLIfaGrILKD~dT-----L~~~gI~Dg~TvHLVi 85 (493)
T KOG0010|consen 15 LIRVTVKTPKDK--YEVNVASDSSVLQLKELIAQ--RFGAPPDQLVLIYAGRILKDDDT-----LKQYGIQDGHTVHLVI 85 (493)
T ss_pred eeEEEEecCCcc--eeEecccchHHHHHHHHHHH--hcCCChhHeeeeecCccccChhh-----HHHcCCCCCcEEEEEe
Confidence 489999999994 69999999999999999999 99999999999999999999999 999999999999 665
Q ss_pred ecC
Q 032742 88 VKP 90 (135)
Q Consensus 88 ~~p 90 (135)
..+
T Consensus 86 k~~ 88 (493)
T KOG0010|consen 86 KSQ 88 (493)
T ss_pred ccC
Confidence 433
No 27
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.47 E-value=6.3e-14 Score=94.45 Aligned_cols=52 Identities=25% Similarity=0.356 Sum_probs=46.4
Q ss_pred CCCcHHHHHHHHHhccCC--CC-CCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032742 29 SPIKVRDLRKLIATSSAN--HL-PIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (135)
Q Consensus 29 ~~~TV~dLK~~Ia~~~~~--~i-p~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (135)
.++||++||++|++ ++ ++ ++++|||||.||.|+|+.+ |++|+|++|++|+++
T Consensus 19 ~~~TV~~LK~kI~~--~~~egi~~~dqQrLIy~GKiL~D~~T-----L~dygI~~gstlhLv 73 (75)
T cd01815 19 GGYQVSTLKQLIAA--QLPDSLPDPELIDLIHCGRKLKDDQT-----LDFYGIQSGSTIHIL 73 (75)
T ss_pred ccCcHHHHHHHHHH--hhccCCCChHHeEEEeCCcCCCCCCc-----HHHcCCCCCCEEEEE
Confidence 36899999999998 75 46 5999999999999999999 999999999999443
No 28
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.5e-14 Score=92.00 Aligned_cols=67 Identities=21% Similarity=0.396 Sum_probs=63.5
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI 84 (135)
|.|++|+..++. +.+++++.++|+.+|+.|++ +.|+||.+|||||.||++.|+.+ -..|++.-|+.+
T Consensus 1 m~iKvktLt~Ke-IeidIep~DkverIKErvEE--keGIPp~qqrli~~gkqm~DD~t-----A~~Y~~~~GSVl 67 (70)
T KOG0005|consen 1 MLIKVKTLTGKE-IEIDIEPTDKVERIKERVEE--KEGIPPQQQRLIYAGKQMNDDKT-----AAHYNLLGGSVL 67 (70)
T ss_pred CeeeEeeeccce-EEEeeCcchHHHHHHHHhhh--hcCCCchhhhhhhcccccccccc-----HHHhhhccceeE
Confidence 578999999987 89999999999999999999 99999999999999999999988 999999988887
No 29
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.43 E-value=5.6e-13 Score=95.91 Aligned_cols=83 Identities=13% Similarity=0.177 Sum_probs=65.8
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhcc---CCC--CCCCceEEEecCeecCCCCCCCCCCccccC----
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSS---ANH--LPIENLRLVFRGKVLDDTQDDDDRDDVYLQ---- 77 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~---~~~--ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~---- 77 (135)
.+++.|++|-..|.---...+++++||++||++|++.. +.+ +++++|||||+||+|+|+.+ |++|+
T Consensus 2 ~~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~T-----L~d~~~p~g 76 (113)
T cd01814 2 EEQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKT-----VGECRSPVG 76 (113)
T ss_pred CccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCc-----HHHhCCccc
Confidence 36789999988886523578899999999999999511 233 44999999999999999999 99999
Q ss_pred --CCCCCEEEEEecCCCCC
Q 032742 78 --LSNGDSVIAAVKPKPPP 94 (135)
Q Consensus 78 --I~dG~tIlv~~~p~~~~ 94 (135)
+....|+.|++.|+++.
T Consensus 77 ~~~~~~~TmHvvlr~~~~~ 95 (113)
T cd01814 77 DIAGGVITMHVVVQPPLAD 95 (113)
T ss_pred ccCCCceEEEEEecCCCCC
Confidence 66667786666665554
No 30
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.39 E-value=1.1e-12 Score=88.01 Aligned_cols=66 Identities=20% Similarity=0.207 Sum_probs=55.3
Q ss_pred EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecC-CCCCCCCCCccccCCC-CCCEEEE
Q 032742 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLD-DTQDDDDRDDVYLQLS-NGDSVIA 86 (135)
Q Consensus 12 I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~-D~~t~d~~~L~~~~I~-dG~tIlv 86 (135)
|.=|...+.. +.+++++++||++||++|++ .+|+|+++||| |.|+.|. |+.+ |++|+++ +|+++++
T Consensus 5 ~~~~~~~~~t-~~l~v~~~~TV~~lK~kI~~--~~gip~~~QrL-~~G~~L~dD~~t-----L~~ygi~~~g~~~~l 72 (75)
T cd01799 5 VEDAQSHTVT-IWLTVRPDMTVAQLKDKVFL--DYGFPPAVQRW-VIGQRLARDQET-----LYSHGIRTNGDSAFL 72 (75)
T ss_pred EeccccCCCe-EEEEECCCCcHHHHHHHHHH--HHCcCHHHEEE-EcCCeeCCCcCC-----HHHcCCCCCCCEEEE
Confidence 3334444444 78999999999999999999 99999999999 9999985 5566 9999999 8899944
No 31
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.38 E-value=1.9e-12 Score=82.60 Aligned_cols=67 Identities=28% Similarity=0.413 Sum_probs=59.5
Q ss_pred EEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032742 14 VKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (135)
Q Consensus 14 VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (135)
||+.++.. +.+.+++++||++||++|+. .+++|+++|+|+|.|+.|.|+.+ |.+|++.+|++|+++.
T Consensus 2 v~~~~~~~-~~~~~~~~~ti~~lK~~i~~--~~~~~~~~~~l~~~g~~l~d~~~-----l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKT-FELEVSPDDTVAELKAKIAA--KEGVPPEQQRLIYAGKILKDDKT-----LSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCE-EEEEECCCChHHHHHHHHHH--HHCcChHHEEEEECCcCCCCcCC-----HHHCCCCCCCEEEEEE
Confidence 56665544 78999999999999999999 99999999999999999988887 9999999999997653
No 32
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.37 E-value=1.2e-12 Score=108.69 Aligned_cols=74 Identities=24% Similarity=0.367 Sum_probs=68.2
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCC--CCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANH--LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~--ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (135)
|+|+||+..+.. +.+++.|+.||.++|++|+. ..| +|+++|+|||.||+|.|+.+ +.+|++++++.| ++
T Consensus 1 m~lt~KtL~q~~-F~iev~Pe~tV~evK~kIet--~~g~dyP~~~QkLIy~GkiL~D~~t-----v~Eykv~E~~fiVvM 72 (340)
T KOG0011|consen 1 MKLTVKTLKQQT-FTIEVKPEDTVVEVKKKIET--EKGPDYPAEQQKLIYSGKILKDETT-----VGEYKVKEKKFIVVM 72 (340)
T ss_pred CeeEeeeccCce-eEeecCcchhHHHHHHHHHh--ccCCCCchhhheeeecceeccCCcc-----hhhhccccCceEEEE
Confidence 789999999977 99999999999999999999 777 99999999999999999988 999999999999 55
Q ss_pred EecCC
Q 032742 87 AVKPK 91 (135)
Q Consensus 87 ~~~p~ 91 (135)
+.+++
T Consensus 73 lsK~k 77 (340)
T KOG0011|consen 73 LSKDK 77 (340)
T ss_pred EecCc
Confidence 66664
No 33
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=7.6e-13 Score=99.64 Aligned_cols=71 Identities=21% Similarity=0.346 Sum_probs=66.0
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEEe
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAAV 88 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv~~ 88 (135)
|+|+|++..++. ..+++.+++||..+|++|+. ..+||+++|||||.|+.|+|+.+ |++|+|+..+|| +++.
T Consensus 1 m~ifVk~l~~kt-i~~eve~~~ti~~~Kakiq~--~egIp~dqqrlifag~qLedgrt-----lSDY~Iqkestl~l~l~ 72 (156)
T KOG0004|consen 1 MQIFVKTLTGKT-ITLEVEANDTIDNVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVLR 72 (156)
T ss_pred Cccchhhccccc-eeeeecccccHHHHHHhhhc--ccCCCchhhhhhhhhcccccCCc-----cccccccccceEEEEEE
Confidence 689999999865 78999999999999999999 99999999999999999999988 999999999999 6654
No 34
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=7.3e-13 Score=94.86 Aligned_cols=70 Identities=21% Similarity=0.369 Sum_probs=64.3
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv~ 87 (135)
|++.+++..|+. ..++++++.||..||++|.. +.|+||++|+|+|.|++|+|..+ +++||++--+|| ++.
T Consensus 1 ~~~~~~~~~GKT-~~le~EpS~ti~~vKA~i~~--~~Gi~~~~~~L~~~~k~LED~~T-----la~Y~i~~~~Tl~~~~ 71 (128)
T KOG0003|consen 1 MQIFVKTLTGKT-ITLEVEPSDTIDNVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LADYNIQKESTLHLVL 71 (128)
T ss_pred CcEEEEEeeCce-EEEEecccchHHHHHHHhcc--ccCCCHHHHHHHhcccccccCCc-----ccccCccchhhhhhhH
Confidence 467888888865 88999999999999999999 99999999999999999999998 999999999999 553
No 35
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.19 E-value=1.6e-10 Score=78.81 Aligned_cols=72 Identities=18% Similarity=0.267 Sum_probs=57.5
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEE-EecCe-----ec-CCCCCCCCCCccccCCCCC
Q 032742 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRL-VFRGK-----VL-DDTQDDDDRDDVYLQLSNG 81 (135)
Q Consensus 9 ~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRL-I~~Gk-----~L-~D~~t~d~~~L~~~~I~dG 81 (135)
++.|.|.+..........+++++||.+||++++. .+|++|+.||| +|.|+ .| +|+. .|++|++++|
T Consensus 1 ~v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~--~~G~~~~~mrL~l~~~~~~~~~~l~~d~~-----~L~~y~~~dg 73 (84)
T cd01789 1 TVTVNITSSADSFSFEKKYSRGLTIAELKKKLEL--VVGTPASSMRLQLFDGDDKLVSKLDDDDA-----LLGSYPVDDG 73 (84)
T ss_pred CEEEEEEeCCCceeeeEecCCCCcHHHHHHHHHH--HHCCCccceEEEEEcCCCCeEeecCCCcc-----EeeeccCCCC
Confidence 3678888765444344569999999999999999 99999999999 58888 34 3444 4999999999
Q ss_pred CEEEEE
Q 032742 82 DSVIAA 87 (135)
Q Consensus 82 ~tIlv~ 87 (135)
.+|+|.
T Consensus 74 ~~IhVv 79 (84)
T cd01789 74 CRIHVI 79 (84)
T ss_pred CEEEEE
Confidence 999443
No 36
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.14 E-value=9.4e-11 Score=76.58 Aligned_cols=67 Identities=25% Similarity=0.446 Sum_probs=61.6
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC-CceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI-ENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~-~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI 84 (135)
|+|+|++.+++. +.+.|.+++++..|.+.+++ ..++++ +.++|+|.|+.|..+.| +.++++++|++|
T Consensus 1 I~i~v~~~~~~~-~~~~v~~~~~~~~l~~~~~~--~~~i~~~~~~~l~fdG~~L~~~~T-----~~~~~ied~d~I 68 (72)
T PF11976_consen 1 ITIKVRSQDGKE-IKFKVKPTTTVSKLIEKYCE--KKGIPPEESIRLIFDGKRLDPNDT-----PEDLGIEDGDTI 68 (72)
T ss_dssp EEEEEEETTSEE-EEEEEETTSCCHHHHHHHHH--HHTTTT-TTEEEEETTEEE-TTSC-----HHHHT-STTEEE
T ss_pred CEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--hhCCCccceEEEEECCEEcCCCCC-----HHHCCCCCCCEE
Confidence 789999988864 88999999999999999999 999999 99999999999999988 999999999999
No 37
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.10 E-value=2e-10 Score=81.35 Aligned_cols=60 Identities=20% Similarity=0.181 Sum_probs=53.5
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (135)
..++|++++||++||.+|.+ .++++|.+|+|+|.|+.|.|+ +.+|++|||..|+.|+++.
T Consensus 17 ~~L~V~~~~TVg~LK~lImQ--~f~V~P~dQkL~~dG~~L~DD----srTLssyGv~sgSvl~Lli 76 (107)
T cd01795 17 KALLVSANQTLKELKIQIMH--AFSVAPFDQNLSIDGKILSDD----CATLGTLGVIPESVILLKA 76 (107)
T ss_pred ceEEeCccccHHHHHHHHHH--HhcCCcccceeeecCceeccC----CccHHhcCCCCCCEEEEEe
Confidence 47899999999999999999 999999999999999988643 4579999999999995554
No 38
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=99.09 E-value=2.8e-10 Score=76.08 Aligned_cols=69 Identities=29% Similarity=0.363 Sum_probs=54.6
Q ss_pred EEEEEeCC-CCCcEEEEe-cCCCcHHHHHHHHHhccCCC-CCCCceEE--EecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032742 11 EITVKTIG-PAPPSRLSV-SSPIKVRDLRKLIATSSANH-LPIENLRL--VFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (135)
Q Consensus 11 ~I~VKt~~-~~~~~~i~v-~~~~TV~dLK~~Ia~~~~~~-ip~~~QRL--I~~Gk~L~D~~t~d~~~L~~~~I~dG~tIl 85 (135)
+|.++..+ ... ..+++ ++++||++||+.|++ ..+ ++++|||| ++.|+.|.|+.+ |.++|+++|++||
T Consensus 2 ~i~~~~~~~k~~-~~~~~~~~~aTV~dlk~~i~~--~~~~~~~~Rqrl~~~~~g~~L~d~~t-----L~~~gv~~g~~ly 73 (77)
T cd01801 2 EILDAKRSDKPI-GKLKVSSGDATIADLKKLIAK--SSPQLTVNRQSLRLEPKGKSLKDDDT-----LVDLGVGAGATLY 73 (77)
T ss_pred eeeccccCcCce-eecccCCCCccHHHHHHHHHH--HcCCCCcceeEEEeCCCCcccCCccc-----HhhcCCCCCCEEE
Confidence 45566655 322 22444 478999999999998 664 68999999 599999998888 9999999999998
Q ss_pred EE
Q 032742 86 AA 87 (135)
Q Consensus 86 v~ 87 (135)
|+
T Consensus 74 vK 75 (77)
T cd01801 74 VR 75 (77)
T ss_pred Ee
Confidence 86
No 39
>PLN02560 enoyl-CoA reductase
Probab=99.06 E-value=5e-10 Score=92.79 Aligned_cols=73 Identities=26% Similarity=0.289 Sum_probs=61.4
Q ss_pred eEEEEEeCCCCCcE---EEEecCCCcHHHHHHHHHhccCCCC-CCCceEEEec---C----eecCCCCCCCCCCccccCC
Q 032742 10 VEITVKTIGPAPPS---RLSVSSPIKVRDLRKLIATSSANHL-PIENLRLVFR---G----KVLDDTQDDDDRDDVYLQL 78 (135)
Q Consensus 10 m~I~VKt~~~~~~~---~i~v~~~~TV~dLK~~Ia~~~~~~i-p~~~QRLI~~---G----k~L~D~~t~d~~~L~~~~I 78 (135)
|+|+|+..+|+. + ++++++++||++||++|++ +.+. +++||||++. | +.|+|+.+ |+++|+
T Consensus 1 M~I~Vk~~~Gk~-i~~~~lev~~~aTV~dLK~~Isk--~~~~~~~~RqRL~~~~~~gk~~g~~L~d~kt-----L~d~gv 72 (308)
T PLN02560 1 MKVTVVSRSGRE-IIKGGLEVPDSATVADLKKAIHK--RKKKYYPSRQRLTLPLPPGKTRPTVLDDSKS-----LKDYGL 72 (308)
T ss_pred CEEEEEcCCCCe-ecceeEEcCCCCcHHHHHHHHHH--HcCCCChhheEEEEecCCCCcCccccCCCCC-----HHhcCC
Confidence 678999777765 4 6899999999999999998 7775 8999999983 3 36777777 999999
Q ss_pred CCCCEEEEEecC
Q 032742 79 SNGDSVIAAVKP 90 (135)
Q Consensus 79 ~dG~tIlv~~~p 90 (135)
++|++|+++--.
T Consensus 73 ~~gstLy~kDLG 84 (308)
T PLN02560 73 GDGGTVVFKDLG 84 (308)
T ss_pred CCCceEEEEeCC
Confidence 999999998544
No 40
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.95 E-value=3.6e-09 Score=72.00 Aligned_cols=76 Identities=16% Similarity=0.295 Sum_probs=56.9
Q ss_pred ceEEEEEeCCCC-CcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec----CeecCCCCCCCCCCccccCCCCCCE
Q 032742 9 SVEITVKTIGPA-PPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR----GKVLDDTQDDDDRDDVYLQLSNGDS 83 (135)
Q Consensus 9 ~m~I~VKt~~~~-~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~----Gk~L~D~~t~d~~~L~~~~I~dG~t 83 (135)
++.|.|.+.... ......++.++||++||++|+. .+|+|++.|||.|. |.... ...+|+..|.+|++++|.+
T Consensus 1 ~v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~--~~Gi~~~~m~L~l~~~~~~~~~~-~~~dd~~~L~~y~~~dg~~ 77 (87)
T PF14560_consen 1 VVKLFITSSNSKQRSVEKRFPKSITVSELKQKLEK--LTGIPPSDMRLQLKSDKDDSKIE-ELDDDDATLGSYGIKDGMR 77 (87)
T ss_dssp EEEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHH--HHTS-TTTEEEEEE-TSSSSEEE-ESSGSSSBCCHHT-STTEE
T ss_pred CEEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHH--HhCCCcccEEEEEEecCCCcccc-ccCCCccEeecCCCCCCCE
Confidence 477888887664 3366899999999999999999 99999999999887 12111 1123445699999999999
Q ss_pred EEEE
Q 032742 84 VIAA 87 (135)
Q Consensus 84 Ilv~ 87 (135)
|+|.
T Consensus 78 i~V~ 81 (87)
T PF14560_consen 78 IHVV 81 (87)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9664
No 41
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.86 E-value=3.3e-08 Score=71.05 Aligned_cols=81 Identities=21% Similarity=0.404 Sum_probs=57.5
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCC-----CCCCceEEEecCeecCCCCCCCCCCccccCCCCCC
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANH-----LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGD 82 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~-----ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~ 82 (135)
+.|.|+++-.+|.-...+.+++++||.+||+.|...-... ..++.+||||.||.|+|+.+ |.++.+..|+
T Consensus 1 ~~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~t-----L~~~~~~~~~ 75 (111)
T PF13881_consen 1 DKIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKT-----LSDCRLPSGE 75 (111)
T ss_dssp TSEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSB-----TGGGT--TTS
T ss_pred CeEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCc-----HHHhCCCCCC
Confidence 3688899988887336789999999999999998622112 24667999999999999999 9999999888
Q ss_pred E-----E-EEEecCCCC
Q 032742 83 S-----V-IAAVKPKPP 93 (135)
Q Consensus 83 t-----I-lv~~~p~~~ 93 (135)
+ + .+.+.|..+
T Consensus 76 ~~~~~~vmHlvvrp~~~ 92 (111)
T PF13881_consen 76 TPGGPTVMHLVVRPNAP 92 (111)
T ss_dssp ETT--EEEEEEE-SSSS
T ss_pred CCCCCEEEEEEecCCCC
Confidence 5 4 445555433
No 42
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=4.7e-09 Score=97.32 Aligned_cols=71 Identities=20% Similarity=0.486 Sum_probs=64.1
Q ss_pred EEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEecC
Q 032742 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVKP 90 (135)
Q Consensus 11 ~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~~p 90 (135)
.|+|||++... .++.|....||.+||.+|.+ +.+|+.+.|||||.|++|.|+++ +.+|+| +|.+|.++-.|
T Consensus 4 ~v~vktld~r~-~t~~ig~q~ti~~~~d~~r~--~~ni~s~~qr~i~~grvl~~~k~-----vq~~~v-dgk~~hlverp 74 (1143)
T KOG4248|consen 4 NVLVKTLDSRT-RTFIIGAQMTIKEFKDHIRA--SVNIPSEKQRLIYQGRVLQDDKK-----VQEYNV-DGKVIHLVERP 74 (1143)
T ss_pred ceeeeecccce-eEEEechHHHHHHHHHHHHH--hcccccccceeeecceeeccchh-----hhhccC-CCeEEEeeccC
Confidence 48999999865 88999999999999999999 99999999999999999999998 999999 88888554443
No 43
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=2.2e-08 Score=86.61 Aligned_cols=105 Identities=16% Similarity=0.161 Sum_probs=77.6
Q ss_pred ceEEEEEeCCCCCcEEEE-ecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032742 9 SVEITVKTIGPAPPSRLS-VSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (135)
Q Consensus 9 ~m~I~VKt~~~~~~~~i~-v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (135)
+..|.||+.+..+ .++ ++.++|+..||+++.. .+|++|+|||++++|+.++|+-. +...+|++|.+|+|+
T Consensus 3 ~~~v~VKW~gk~y--~v~~l~~d~t~~vlKaqlf~--LTgV~PeRQKv~vKGg~a~dd~~-----~~al~iKpn~~lmMm 73 (473)
T KOG1872|consen 3 SDTVIVKWGGKKY--PVETLSTDETPSVLKAQLFA--LTGVPPERQKVMVKGGLAKDDVD-----WGALQIKPNETLMMM 73 (473)
T ss_pred cceEeeeecCccc--cceeccCCCchHHHHHHHHH--hcCCCccceeEEEeccccccccc-----ccccccCCCCEEEee
Confidence 4568999977764 655 9999999999999999 99999999999999999998755 889999999999998
Q ss_pred ecCC----CCCccccCCCCCCccccc--cccCCCcchHHHHH
Q 032742 88 VKPK----PPPRHLRDDTCIDDDDLD--LFKLPQSTSRWKRK 123 (135)
Q Consensus 88 ~~p~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 123 (135)
+.+. +|......- ++..++.+ -..+|...++...+
T Consensus 74 Gt~e~~~e~p~~~~~~~-ed~~e~~~~~~~~lp~gl~nlgNt 114 (473)
T KOG1872|consen 74 GTAEAGLEPPSLPPTFI-EDSAEQFASAALPLPVGLPNLGNT 114 (473)
T ss_pred ccccccccCcccCCcch-hhhhHHHHHhhccCCccccchhHH
Confidence 8664 333332211 11122222 26677666655544
No 44
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.72 E-value=1.5e-07 Score=58.96 Aligned_cols=68 Identities=25% Similarity=0.392 Sum_probs=60.2
Q ss_pred EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032742 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (135)
Q Consensus 12 I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (135)
+.+++..++. +.+.+.+..+|..+|.+|+. ..++++..|++.+.|+.|.|+.+ +.+|+|..++++.+.
T Consensus 2 ~~~~~~~gk~-~~~~~~~~~~i~~~k~~i~~--~~~~~~~~q~~~~~~~~l~d~~~-----l~~~~i~~~~~~~l~ 69 (75)
T KOG0001|consen 2 IFVKTLDGKT-ITLEVSPSDTIEVVKAKIRD--KEGIPVDQQRLIFGGKPLEDGRT-----LADYNIQEGSTLHLV 69 (75)
T ss_pred EEEEecCCCE-EEEEecCCCHHHHHHHHHHh--hcCCCCeeEEEEECCEECcCCCc-----HHHhCCCCCCEEEEE
Confidence 4667766655 78999999999999999999 89999999999999999999877 999999999999443
No 45
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.65 E-value=5.4e-08 Score=66.09 Aligned_cols=75 Identities=20% Similarity=0.277 Sum_probs=44.2
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCC-CCCCCCccccCCCCCCEEEE
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQ-DDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~-t~d~~~L~~~~I~dG~tIlv 86 (135)
+.|-|.|++..|. ..|++++++|+.+|+++|++ .++++++.|.| |..+...... ..++.+++++||+.||.||+
T Consensus 3 ~~milRvrS~dG~--~Rie~~~~~t~~~L~~kI~~--~l~~~~~~~~L-~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL 77 (80)
T PF11543_consen 3 SSMILRVRSKDGM--KRIEVSPSSTLSDLKEKISE--QLSIPDSSQSL-SKDRNNKEELKSSDSKTLSSLGLKHGDMLYL 77 (80)
T ss_dssp ---EEEEE-SSEE--EEEEE-TTSBHHHHHHHHHH--HS---TTT----BSSGGGGGCSSS-TT-CCCCT---TT-EEE-
T ss_pred ccEEEEEECCCCC--EEEEcCCcccHHHHHHHHHH--HcCCCCcceEE-EecCCCCcccccCCcCCHHHcCCCCccEEEE
Confidence 6788999999886 58999999999999999999 99999999887 4333322211 23456799999999999976
Q ss_pred E
Q 032742 87 A 87 (135)
Q Consensus 87 ~ 87 (135)
.
T Consensus 78 ~ 78 (80)
T PF11543_consen 78 K 78 (80)
T ss_dssp -
T ss_pred e
Confidence 4
No 46
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.49 E-value=3.2e-07 Score=66.40 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=56.0
Q ss_pred EEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCC-------CCCCE
Q 032742 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQL-------SNGDS 83 (135)
Q Consensus 11 ~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I-------~dG~t 83 (135)
.+++...-.+.++-++..++.||.+||++|+. -...||+.|||+-.+..|+|+++ |++||+ ++-.+
T Consensus 2 dvFlmIrR~KTTiF~dakes~tVlelK~~ieg--I~k~pp~dQrL~kd~qvLeD~kT-----L~d~g~t~~~akaq~pA~ 74 (119)
T cd01788 2 DVFLMIRRHKTTIFTDAKESTTVYELKRIVEG--ILKRPPEDQRLYKDDQLLDDGKT-----LGDCGFTSQTARPQAPAT 74 (119)
T ss_pred ceEEEEEecceEEEeecCCcccHHHHHHHHHH--HhcCChhHheeecCceeeccccc-----HHHcCccccccccCCCCe
Confidence 34444444554466799999999999999998 88999999999966678898888 999999 55666
Q ss_pred E-EEEe
Q 032742 84 V-IAAV 88 (135)
Q Consensus 84 I-lv~~ 88 (135)
| +...
T Consensus 75 vgLa~r 80 (119)
T cd01788 75 VGLAFR 80 (119)
T ss_pred EEEEEe
Confidence 6 5544
No 47
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.47 E-value=8.8e-07 Score=52.32 Aligned_cols=58 Identities=33% Similarity=0.429 Sum_probs=52.3
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (135)
..+.+++..|+++||++|.+ +.++++++|+|.+.|..+.+... +..+++.+|++|.+.
T Consensus 10 ~~~~~~~~~tv~~l~~~i~~--~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~i~~~ 67 (69)
T cd00196 10 VELLVPSGTTVADLKEKLAK--KLGLPPEQQRLLVNGKILPDSLT-----LEDYGLQDGDELVLV 67 (69)
T ss_pred EEEEcCCCCcHHHHHHHHHH--HHCcChHHeEEEECCeECCCCCc-----HHHcCCCCCCEEEEE
Confidence 67888899999999999999 99999999999999999998776 678999999999554
No 48
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=9.9e-06 Score=68.03 Aligned_cols=73 Identities=22% Similarity=0.354 Sum_probs=58.0
Q ss_pred EEEEEeCC--CCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032742 11 EITVKTIG--PAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (135)
Q Consensus 11 ~I~VKt~~--~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv~ 87 (135)
.+.|+..+ ....++|+|+.+.+|.+||+.++. ..|+|++++|+||.||.|.++-+ +..+.+...+.+ +|.
T Consensus 2 ~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak--~~gvp~D~L~viFaGKeLs~~tt-----v~~cDL~qqs~~hi~~ 74 (446)
T KOG0006|consen 2 IVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAK--RQGVPADQLRVIFAGKELSNDTT-----VQNCDLSQQSATHIML 74 (446)
T ss_pred eEEEEeCCccccCceeEEEecCCCHHHHHHHHHH--hhCCChhheEEEEeccccccCce-----eecccccccchhhhhc
Confidence 34555432 223356889999999999999999 99999999999999999998887 998888777777 554
Q ss_pred ecC
Q 032742 88 VKP 90 (135)
Q Consensus 88 ~~p 90 (135)
..|
T Consensus 75 lRP 77 (446)
T KOG0006|consen 75 LRP 77 (446)
T ss_pred cCc
Confidence 555
No 49
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=97.85 E-value=5.7e-05 Score=53.09 Aligned_cols=54 Identities=26% Similarity=0.447 Sum_probs=41.2
Q ss_pred EEEEeCCCCCcEEEEec--CCCcHHHHHHHHHhccCC--CCCCCceEEEecCeecCCCCC
Q 032742 12 ITVKTIGPAPPSRLSVS--SPIKVRDLRKLIATSSAN--HLPIENLRLVFRGKVLDDTQD 67 (135)
Q Consensus 12 I~VKt~~~~~~~~i~v~--~~~TV~dLK~~Ia~~~~~--~ip~~~QRLI~~Gk~L~D~~t 67 (135)
|.|+...+-.-..++++ ...||.+||++|.+ .. ...-.++||||+|+.|.|+..
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~--~~p~~~s~~rLRlI~~Gr~L~d~t~ 60 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRE--RLPPEPSRRRLRLIYAGRLLNDHTD 60 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHh--hcCCCCccccEEeeecCcccCccch
Confidence 56666554443567777 67999999999988 44 355667999999999998765
No 50
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=3.7e-05 Score=50.70 Aligned_cols=68 Identities=18% Similarity=0.192 Sum_probs=56.4
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032742 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (135)
Q Consensus 9 ~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI 84 (135)
|+++.+...-|++ ..+..++++||+++|..|+. ++|-.++...|---+..++|.-+ |++|.+.+|--+
T Consensus 1 miev~~nDrLGKK-VRvKCn~dDtiGD~KKliaa--QtGT~~~kivl~k~~~i~kd~I~-----L~dyeihdg~~l 68 (73)
T KOG3493|consen 1 MIEVVLNDRLGKK-VRVKCNTDDTIGDLKKLIAA--QTGTRPEKIVLKKWYTIFKDHIT-----LSDYEIHDGMNL 68 (73)
T ss_pred CceehhhhhcCce-EEEEeCCcccccCHHHHHHH--hhCCChhHhHHHhhhhhhhcccc-----eeeEEeccCccE
Confidence 4566666666766 78999999999999999998 99999998777656667777777 999999999876
No 51
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.0012 Score=46.69 Aligned_cols=72 Identities=19% Similarity=0.405 Sum_probs=60.5
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (135)
.-|.|+|+.-++.. ..+.|--.+...-|....++ ..|++.+..|++|.|+.+...+| -.+++.++|+.| ++
T Consensus 19 ~hi~LKV~gqd~~~-~~Fkikr~t~LkKLM~aYc~--r~Gl~~~s~RFlFdG~rI~~~~T-----P~~L~mEd~D~Iev~ 90 (99)
T KOG1769|consen 19 EHINLKVKGQDGSV-VVFKIKRHTPLKKLMKAYCE--RQGLSMNSLRFLFDGQRIRETHT-----PADLEMEDGDEIEVV 90 (99)
T ss_pred ceEEEEEecCCCCE-EEEEeecCChHHHHHHHHHH--HcCCccceEEEEECCcCcCCCCC-----hhhhCCcCCcEEEEE
Confidence 34666666633322 46788999999999999988 99999999999999999999999 999999999999 55
Q ss_pred E
Q 032742 87 A 87 (135)
Q Consensus 87 ~ 87 (135)
.
T Consensus 91 ~ 91 (99)
T KOG1769|consen 91 Q 91 (99)
T ss_pred e
Confidence 4
No 52
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.31 E-value=0.0022 Score=43.41 Aligned_cols=66 Identities=17% Similarity=0.231 Sum_probs=52.2
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC---e--ecCCCCCCCCCCccccCCCCCCEE
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG---K--VLDDTQDDDDRDDVYLQLSNGDSV 84 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~G---k--~L~D~~t~d~~~L~~~~I~dG~tI 84 (135)
|+|+|+-.+... ..+.|+|..+|..+|++|.. ..+++- .|||-|.- + .|.+..+ |++|||=..-.|
T Consensus 1 iqVtV~q~g~~d-l~l~vnPy~pI~k~K~kI~~--~~~~~g-~qrLsfQepgg~rqlL~s~~s-----LA~yGiFs~~~i 71 (80)
T cd01811 1 IQVTVEQTGYSD-WILRVNPYSPIRKIKEKIRR--SRNCSG-LQRLSFQEPGGERQLLSSRKS-----LADYGIFSKTNI 71 (80)
T ss_pred CEEEeeecCCCc-eEEEeCCcchHHHHHHHHHH--hhCccc-ceEEEeecCCccccccccccc-----HhhhcceeccEE
Confidence 578999877765 89999999999999999987 666655 99998852 2 2444444 999999877777
No 53
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.00024 Score=59.95 Aligned_cols=83 Identities=16% Similarity=0.097 Sum_probs=58.0
Q ss_pred CCCCCceEEEEEeCCCCCc-EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCC-
Q 032742 4 GEISESVEITVKTIGPAPP-SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNG- 81 (135)
Q Consensus 4 ~~~~~~m~I~VKt~~~~~~-~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG- 81 (135)
......+++.||+.++++. ..|..+..+||++||..++..+-.+.-...|||||.||.|.|... +.+.-.+..
T Consensus 4 ~~~e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qc-----l~d~lrkq~k 78 (391)
T KOG4583|consen 4 TIFEFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQC-----LTDWLRKQVK 78 (391)
T ss_pred ccCCcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchh-----HHHHHHHHHH
Confidence 3345568999999888763 235556669999999999874444444566999999999998887 766654432
Q ss_pred -CEE-EEEecCC
Q 032742 82 -DSV-IAAVKPK 91 (135)
Q Consensus 82 -~tI-lv~~~p~ 91 (135)
..+ +|+..+.
T Consensus 79 ~Hv~hlvcnsk~ 90 (391)
T KOG4583|consen 79 EHVKHLVCNSKE 90 (391)
T ss_pred HHHHHHhcCCCC
Confidence 233 6665554
No 54
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.09 E-value=0.0054 Score=40.66 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=60.5
Q ss_pred CCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCc-eEEE--ecCeecCCCCCCCCCCccccCCCCC
Q 032742 5 EISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN-LRLV--FRGKVLDDTQDDDDRDDVYLQLSNG 81 (135)
Q Consensus 5 ~~~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~-QRLI--~~Gk~L~D~~t~d~~~L~~~~I~dG 81 (135)
++...+.|.||.++|+. +.-.+..++||.+|...|.. ....+... ..|+ |-.+.+.++. +.+|.++++.++
T Consensus 2 ~~~~~~~I~vRlpdG~~-l~~~F~~~~tl~~l~~~v~~--~~~~~~~~~f~L~~~~Pr~~l~~~~---~~tl~e~~l~p~ 75 (82)
T PF00789_consen 2 EESDVVRIQVRLPDGSR-LQRRFPKSDTLQDLYDFVES--QLFSPEESDFELITAFPRRELTDED---SKTLEEAGLLPS 75 (82)
T ss_dssp STSSEEEEEEEETTSTE-EEEEEETTSBHHHHHHHHHH--HHHCTTTSSEEEEESSSTEECCSTT---TSBTCCCTTSSC
T ss_pred CCCCEEEEEEECCCCCE-EEEEECCcchHHHHHHHHHH--hcCCCCCccEEEEeCCCCcCCCccc---cccHHHhcCCCC
Confidence 35678999999999976 77899999999999999987 55555554 7775 6677776544 356999999999
Q ss_pred CEEEE
Q 032742 82 DSVIA 86 (135)
Q Consensus 82 ~tIlv 86 (135)
.+|+|
T Consensus 76 ~~l~v 80 (82)
T PF00789_consen 76 ATLIV 80 (82)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 98866
No 55
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.06 E-value=0.00069 Score=47.96 Aligned_cols=61 Identities=13% Similarity=0.123 Sum_probs=46.9
Q ss_pred EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC--eecCCCCCCCCCCccccCCC
Q 032742 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG--KVLDDTQDDDDRDDVYLQLS 79 (135)
Q Consensus 12 I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~G--k~L~D~~t~d~~~L~~~~I~ 79 (135)
++++..-.+.++-++..++.||-+||.+++. -..-|++.|||.... ..|.|+++ |+++|+.
T Consensus 3 ~f~~VrR~kttif~da~es~tV~elK~~l~g--i~~~Pvn~qrL~kmd~eqlL~D~kt-----L~d~gft 65 (110)
T KOG4495|consen 3 VFLRVRRHKTTIFTDAKESSTVFELKRKLEG--ILKRPVNEQRLYKMDTEQLLDDGKT-----LGDCGFT 65 (110)
T ss_pred eeeeeeecceeEEeecCccccHHHHHHHHHH--HHhCCCcchheeecCHHHHhhccch-----hhhcccc
Confidence 3444433444366889999999999999988 888999999998744 46777777 9999775
No 56
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=96.87 E-value=0.003 Score=42.10 Aligned_cols=69 Identities=20% Similarity=0.225 Sum_probs=47.7
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC---C---ceEEE-ecCeecCCCCCCCCCCccccCCCCCC
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI---E---NLRLV-FRGKVLDDTQDDDDRDDVYLQLSNGD 82 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~---~---~QRLI-~~Gk~L~D~~t~d~~~L~~~~I~dG~ 82 (135)
+.|+|....+.. +.+.++.+.+|++|...|.+ ..+.+. . .-+|. -+|..|.++.+ |.+++|.+|+
T Consensus 3 ~rVtv~~~~~~~-~Dl~lP~~vpv~~li~~l~~--~~~~~~~~~~~~~~~~L~~~~g~~L~~~~t-----L~~~gV~dGd 74 (79)
T PF08817_consen 3 CRVTVDAGNGRQ-VDLALPADVPVAELIPELVE--LLGLPGDDPPGHGQWVLARAGGRPLDPDQT-----LADAGVRDGD 74 (79)
T ss_dssp EEEEEE-TT--E-EEEEEETTSBTTHHHHHHHH--HS---S---TT-E-EEEG-GGTEEEETTSB-----CGGGT--TT-
T ss_pred EEEEEEcCCCcE-EEEEcCCCCcHHHHHHHHHH--HhCCccCCCCCcceEEEEecCCcccCCcCc-----HhHcCCCCCC
Confidence 567777754333 78999999999999999988 666532 2 24555 67889999888 9999999999
Q ss_pred EEEE
Q 032742 83 SVIA 86 (135)
Q Consensus 83 tIlv 86 (135)
.+++
T Consensus 75 ~L~L 78 (79)
T PF08817_consen 75 VLVL 78 (79)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9854
No 57
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=96.55 E-value=0.0041 Score=50.86 Aligned_cols=75 Identities=20% Similarity=0.173 Sum_probs=54.6
Q ss_pred eEEEEEeCCCCCcEE-EEecCCCcHHHHHHHHHhccCCCCCCCceEE----EecCeecCCCCCCCCCCccccCCCCCCEE
Q 032742 10 VEITVKTIGPAPPSR-LSVSSPIKVRDLRKLIATSSANHLPIENLRL----VFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (135)
Q Consensus 10 m~I~VKt~~~~~~~~-i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRL----I~~Gk~L~D~~t~d~~~L~~~~I~dG~tI 84 (135)
|+|++.+.++....+ ...+...||.|+++.|.. -..++.+.++|+ .-+|+.+.|+.+ |++|+..+|++|
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~-~~~k~~~~~~r~tlr~e~kgkpl~~~s~-----l~e~~~~s~~~i 74 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISA-KNLKITPYRIRLTLRVEPKGKPLIDNSK-----LQEYGDGSGATI 74 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHH-hhhccCccchhheeeccCCCccccchhH-----HHHhccCCCCEE
Confidence 578888766643234 455667999999977765 244676644433 467999998888 999999999999
Q ss_pred EEEecC
Q 032742 85 IAAVKP 90 (135)
Q Consensus 85 lv~~~p 90 (135)
+|+--.
T Consensus 75 ~vKDLG 80 (297)
T KOG1639|consen 75 YVKDLG 80 (297)
T ss_pred EEeccC
Confidence 887543
No 58
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.43 E-value=0.038 Score=36.71 Aligned_cols=74 Identities=9% Similarity=0.127 Sum_probs=56.8
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI--~~Gk~L~D~~t~d~~~L~~~~I~dG~tIl 85 (135)
....|.||..+|+. +...++.+.||.+|.+.|.. ..+.......|+ |-.+.+.++.. +.+|.+.++..+.+|+
T Consensus 3 ~~~~I~iRlPdG~r-i~~~F~~~~tl~~v~~~v~~--~~~~~~~~f~L~t~~Prk~l~~~d~--~~tL~e~gL~p~~~l~ 77 (80)
T smart00166 3 DQCRLQIRLPDGSR-LVRRFPSSDTLRTVYEFVSA--ALTDGNDPFTLNSPFPRRTFTKDDY--SKTLLELALLPSSTLV 77 (80)
T ss_pred CeEEEEEEcCCCCE-EEEEeCCCCcHHHHHHHHHH--cccCCCCCEEEEeCCCCcCCccccc--cCCHHHCCCCCceEEE
Confidence 56789999999987 77899999999999999966 556666667775 66666754321 2459999998888886
Q ss_pred E
Q 032742 86 A 86 (135)
Q Consensus 86 v 86 (135)
|
T Consensus 78 v 78 (80)
T smart00166 78 L 78 (80)
T ss_pred E
Confidence 5
No 59
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.018 Score=45.97 Aligned_cols=111 Identities=14% Similarity=0.248 Sum_probs=70.8
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEE-EecCe-ecCCCCCCCCCCccccCCCCCCEE-E
Q 032742 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRL-VFRGK-VLDDTQDDDDRDDVYLQLSNGDSV-I 85 (135)
Q Consensus 9 ~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRL-I~~Gk-~L~D~~t~d~~~L~~~~I~dG~tI-l 85 (135)
++.|.|-+.....+....++++.||.+||.+++. .+|.+++..+| +|.|- ...-....++..|..|...+|-.| +
T Consensus 1 ~v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~--~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihv 78 (234)
T KOG3206|consen 1 MVRVVISSSLNDFRTEKRLSNSLTLAQFKDKLEL--LTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHV 78 (234)
T ss_pred CeEEEEecccccchhhhhcCCcCcHHHHHhhhhh--hhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEE
Confidence 4677777766554345788999999999999988 99999999998 46661 111112223356999999999988 4
Q ss_pred EEecCCCCCccccCC-----CCCCccccccccCCCcchHHHHHH
Q 032742 86 AAVKPKPPPRHLRDD-----TCIDDDDLDLFKLPQSTSRWKRKL 124 (135)
Q Consensus 86 v~~~p~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 124 (135)
+=..+..-.. ..|. ..+++ ++-.+=.+|-.+|+++-
T Consensus 79 iD~~~~~~~~-~~d~s~veky~iSe--e~Y~qRtdSvr~~kk~~ 119 (234)
T KOG3206|consen 79 IDSNAQSISN-TEDESIVEKYEISE--EDYLQRTDSVRRFKKKH 119 (234)
T ss_pred EecCcccccc-ccccccceeeecCH--HHHhhhhHHHHHHHHHh
Confidence 4444433322 2222 12222 22344456677887653
No 60
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=95.97 E-value=0.11 Score=34.13 Aligned_cols=71 Identities=21% Similarity=0.280 Sum_probs=52.4
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 9 ~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI--~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
+..|.||..+|+. +.-.++.++||.+|.+.|.. . +.......|+ |-.+.+.++ +.+.+|.+.||. ++++++
T Consensus 2 ~t~i~iRlpdG~~-~~~~F~~~~tl~~l~~fv~~--~-~~~~~~f~L~t~~Pr~~~~~~--~~~~TL~e~gL~-~s~~~~ 74 (77)
T cd01767 2 TTKIQIRLPDGKR-LEQRFNSTHKLSDVRDFVES--N-GPPAEPFTLMTSFPRRVLTDL--DYELTLQEAGLV-NEVVFQ 74 (77)
T ss_pred cEEEEEEcCCCCE-EEEEeCCCCCHHHHHHHHHH--c-CCCCCCEEEEeCCCCccCCCC--CccCcHHHcCCc-cceEEE
Confidence 4679999999976 77899999999999999976 3 3335556665 556777552 234569999999 555544
No 61
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.71 E-value=0.15 Score=34.78 Aligned_cols=76 Identities=16% Similarity=0.116 Sum_probs=57.6
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC--eecCCC---CCCCCCCccccCCCCC
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG--KVLDDT---QDDDDRDDVYLQLSNG 81 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~G--k~L~D~---~t~d~~~L~~~~I~dG 81 (135)
.+.++|-||..+|+. ..-.++.+.||++|...|.. .+..++...|++.= +.+..- ..+.+.+|.+.||.+.
T Consensus 2 ~~~~~I~iRlp~G~R-l~rrF~~~~tl~~l~~fv~~---~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s 77 (85)
T cd01774 2 PDTVKIVFKLPNGTR-VERRFLFTQSLRVIHDFLFS---LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNS 77 (85)
T ss_pred CceEEEEEECCCCCE-EEEEeCCCCcHHHHHHHHHh---CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCc
Confidence 357899999999986 66789999999999999964 45667888888644 666420 1223456999999987
Q ss_pred CEEEE
Q 032742 82 DSVIA 86 (135)
Q Consensus 82 ~tIlv 86 (135)
.+|+|
T Consensus 78 ~~L~V 82 (85)
T cd01774 78 EVLFV 82 (85)
T ss_pred cEEEE
Confidence 77765
No 62
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.69 E-value=0.021 Score=45.53 Aligned_cols=54 Identities=20% Similarity=0.266 Sum_probs=47.8
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCE
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDS 83 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~t 83 (135)
+.+.++.-.|++++|.+++. +.++++-.||+.|+|+.|-+... |..+++..|..
T Consensus 159 ~~lta~~~Dtv~eik~~L~A--aeg~D~~sQrif~Sg~~l~dkt~-----LeEc~iekg~r 212 (231)
T KOG0013|consen 159 FWLTAPHYDTVGEIKRALRA--AEGVDPLSQRIFFSGGVLVDKTD-----LEECKIEKGQR 212 (231)
T ss_pred eeecccCcCcHHHHHHHHHH--hhccchhhheeeccCCceecccc-----ceeeeecCCCE
Confidence 45677778999999999998 99999999999999999987766 99999999953
No 63
>KOG3249 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.67 E-value=0.0091 Score=45.93 Aligned_cols=80 Identities=45% Similarity=0.705 Sum_probs=54.4
Q ss_pred HHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEecCCCCCccccCCCCCCcccccc-c
Q 032742 33 VRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVKPKPPPRHLRDDTCIDDDDLDL-F 111 (135)
Q Consensus 33 V~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~~p~~~~~~~~~~~~~~~~~~~~-~ 111 (135)
..++++++++ + | |++..|...+|+.+.+..-.+ -....+++-+++.+.+.|.|++-. +++ +++++. +
T Consensus 8 lR~~Rk~k~~--k-~-~v~~~k~~lr~~~~qttg~~~---d~~itlK~~p~f~~a~~~npr~es----~~~-~~~e~v~e 75 (181)
T KOG3249|consen 8 LRDLRKAKAE--K-G-PVSTLKMKLRGKALQTTGDGD---DLYITLKDQPSFIVAVIPNPRAES----FDD-DDDEDVPE 75 (181)
T ss_pred HHHHHHHhhc--c-C-chhhcchHHHHHHhcCCCCCc---cceeeeecCCcceeeecCCCchhh----ccC-CccccCch
Confidence 4566666665 3 3 899999999999998765522 233356777777667777776622 222 334444 9
Q ss_pred cCCCcchHHHHHH
Q 032742 112 KLPQSTSRWKRKL 124 (135)
Q Consensus 112 ~~~~~~~~~~~~~ 124 (135)
+.|++.++|.+..
T Consensus 76 ~qP~~St~~t~k~ 88 (181)
T KOG3249|consen 76 KQPPSSTRWTRKL 88 (181)
T ss_pred hcCCccccccccc
Confidence 9999999999954
No 64
>COG5417 Uncharacterized small protein [Function unknown]
Probab=95.55 E-value=0.09 Score=35.65 Aligned_cols=69 Identities=12% Similarity=0.229 Sum_probs=54.0
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC---CceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI---ENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~---~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI 84 (135)
++|-++.-+++. +.+.++.--+|..|-..+.++.+..+++ ...|..-+++.|.++.. |.+|+|.+|+.+
T Consensus 7 VTvD~t~y~g~~-yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~k-----L~d~~IadGD~L 78 (81)
T COG5417 7 VTVDFTNYNGGT-YDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDK-----LIDYQIADGDIL 78 (81)
T ss_pred EEEEeEecCCce-EEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCce-----EEeccccCCCEE
Confidence 344455556654 7899999999999988888744444443 34899999999998888 999999999988
No 65
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.43 E-value=0.15 Score=34.23 Aligned_cols=70 Identities=20% Similarity=0.237 Sum_probs=53.0
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCC-CCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEE
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANH-LPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~-ip~~~QRLI--~~Gk~L~D~~t~d~~~L~~~~I~dG~tI 84 (135)
.+.+|.||..+|+. +...++.+.||++|.+.|.. ..+ .......|+ |-.+.|.|+ +.+|.+.||.+ +.|
T Consensus 3 p~t~iqiRlpdG~r-~~~rF~~~~tv~~l~~~v~~--~~~~~~~~~f~L~t~fP~k~l~~~----~~Tl~eagL~~-s~v 74 (79)
T cd01770 3 PTTSIQIRLADGKR-LVQKFNSSHRVSDVRDFIVN--ARPEFAARPFTLMTAFPVKELSDE----SLTLKEANLLN-AVI 74 (79)
T ss_pred CeeEEEEECCCCCE-EEEEeCCCCcHHHHHHHHHH--hCCCCCCCCEEEecCCCCcccCCC----CCcHHHCCCcC-cEE
Confidence 46789999999987 77899999999999999986 443 223456665 778888654 35699999985 444
Q ss_pred E
Q 032742 85 I 85 (135)
Q Consensus 85 l 85 (135)
+
T Consensus 75 ~ 75 (79)
T cd01770 75 V 75 (79)
T ss_pred E
Confidence 3
No 66
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.39 E-value=0.22 Score=33.18 Aligned_cols=73 Identities=12% Similarity=0.184 Sum_probs=54.2
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI--~~Gk~L~D~~t~d~~~L~~~~I~dG~tIl 85 (135)
....|.||..+|.. ..-.++.++|+.+|.+.|.. ..+ ......|+ |--|.+.++. -+.+|.++|+.+..+|+
T Consensus 3 ~~~~i~iRlp~G~~-~~~~F~~~~tl~~v~~fV~~--~~~-~~~~f~L~t~fPrk~~~~~d--~~~TL~elgL~Psa~L~ 76 (79)
T cd01772 3 TETRIQIRLLDGTT-LKQTFKAREQLAAVRLFVEL--NTG-NGGPFTLMTPFPRKVFTEDD--MEKPLQELGLVPSAVLI 76 (79)
T ss_pred cEEEEEEECCCCCE-EEEEeCCCChHHHHHHHHHH--cCC-CCCCEEEEeCCCCeECCccc--ccCCHHHCCCCCceEEE
Confidence 45789999999976 77789999999999999986 332 23556665 6677775431 13459999999888876
Q ss_pred E
Q 032742 86 A 86 (135)
Q Consensus 86 v 86 (135)
|
T Consensus 77 v 77 (79)
T cd01772 77 V 77 (79)
T ss_pred E
Confidence 5
No 67
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.11 Score=36.53 Aligned_cols=67 Identities=16% Similarity=0.280 Sum_probs=55.2
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI 84 (135)
|.++|-..++.. +.+.|-.+++..-|-...+. ..|-..+..|++|.|+.+.-+++ -.+++..+|+.|
T Consensus 25 inLkvv~qd~te-lfFkiKktT~f~klm~af~~--rqGK~m~slRfL~dG~rI~~dqT-----P~dldmEdnd~i 91 (103)
T COG5227 25 INLKVVDQDGTE-LFFKIKKTTTFKKLMDAFSR--RQGKNMSSLRFLFDGKRIDLDQT-----PGDLDMEDNDEI 91 (103)
T ss_pred cceEEecCCCCE-EEEEEeccchHHHHHHHHHH--HhCcCcceeEEEEcceecCCCCC-----hhhcCCccchHH
Confidence 444444444433 56788899999999998887 99999999999999999998888 889999998877
No 68
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=94.85 E-value=0.079 Score=34.64 Aligned_cols=55 Identities=15% Similarity=0.085 Sum_probs=39.4
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI 84 (135)
..+.+.++.++.++=+..-+ ++++++++=.|.|+++.++-+.+ +...||.+|.++
T Consensus 9 ~~vkvtp~~~l~~VL~eac~--k~~l~~~~~~L~h~~k~ldlslp-----~R~snL~n~akL 63 (65)
T PF11470_consen 9 FKVKVTPNTTLNQVLEEACK--KFGLDPSSYDLKHNNKPLDLSLP-----FRLSNLPNNAKL 63 (65)
T ss_dssp EEE---TTSBHHHHHHHHHH--HTT--GGG-EEEETTEEESSS-B-----HHHH---SS-EE
T ss_pred EEEEECCCCCHHHHHHHHHH--HcCCCccceEEEECCEEeccccc-----eeecCCCCCCEE
Confidence 67999999999999888877 99999999999999999987777 888899999887
No 69
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.73 E-value=0.53 Score=31.67 Aligned_cols=74 Identities=15% Similarity=0.195 Sum_probs=58.4
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEE
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI--~~Gk~L~D~~t~d~~~L~~~~I~dG~tI 84 (135)
...++|-||.++|.. ..-.+..++++.+|-..|.. .|.++...+|+ |-=+.+.+.. .+.+|.+.|+....+|
T Consensus 2 ~~~~~i~iRlP~G~r-~~rrF~~t~~L~~l~~fv~~---~~~~~~~f~L~t~fPRk~~~~~d--~~~TL~e~gL~p~~~L 75 (80)
T cd01771 2 EPISKLRVRTPSGDF-LERRFLGDTPLQVLLNFVAS---KGYPIDEYKLLSSWPRRDLTQLD--PNFTLLELKLYPQETL 75 (80)
T ss_pred CCeEEEEEECCCCCE-EEEEeCCCCcHHHHHHHHHh---cCCCCCCEEEecCCCCCCCcCCC--CCCcHHHcCCCCCcEE
Confidence 357899999999976 66789999999999999975 47888888886 6667774211 1356999999988888
Q ss_pred EE
Q 032742 85 IA 86 (135)
Q Consensus 85 lv 86 (135)
+|
T Consensus 76 ~V 77 (80)
T cd01771 76 IL 77 (80)
T ss_pred EE
Confidence 66
No 70
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=94.15 E-value=0.23 Score=32.84 Aligned_cols=66 Identities=18% Similarity=0.150 Sum_probs=41.3
Q ss_pred ceEEEEEeCC------CCCcEEEEecCCCcHHHHHHHHHhccCC-CCCC--CceEEEecCeecCCCCCCCCCCccccCCC
Q 032742 9 SVEITVKTIG------PAPPSRLSVSSPIKVRDLRKLIATSSAN-HLPI--ENLRLVFRGKVLDDTQDDDDRDDVYLQLS 79 (135)
Q Consensus 9 ~m~I~VKt~~------~~~~~~i~v~~~~TV~dLK~~Ia~~~~~-~ip~--~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~ 79 (135)
||+|+|+.-+ +.....++++...|+.+|.+.+.+ .. ++.. ..-.+..+|+...+ +.-|+
T Consensus 1 ~m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~--~~p~l~~~~~~~~vavN~~~v~~----------~~~l~ 68 (82)
T PLN02799 1 SVEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVA--KFPSLEEVRSCCVLALNEEYTTE----------SAALK 68 (82)
T ss_pred CeEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHH--HChhHHHHhhCcEEEECCEEcCC----------CcCcC
Confidence 4778888432 333356788888999999999976 43 1111 11235566666532 23589
Q ss_pred CCCEEEE
Q 032742 80 NGDSVIA 86 (135)
Q Consensus 80 dG~tIlv 86 (135)
+||+|-+
T Consensus 69 dgDeVai 75 (82)
T PLN02799 69 DGDELAI 75 (82)
T ss_pred CCCEEEE
Confidence 9999933
No 71
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=93.62 E-value=0.34 Score=37.14 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=40.4
Q ss_pred eEEEEEeCCCC---CcEEEEecCCCcHHHHHHHHHhccCCCCCCCce-EEEe-cCeec
Q 032742 10 VEITVKTIGPA---PPSRLSVSSPIKVRDLRKLIATSSANHLPIENL-RLVF-RGKVL 62 (135)
Q Consensus 10 m~I~VKt~~~~---~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~Q-RLI~-~Gk~L 62 (135)
|+|.|++..+. .++.+.+++++||.+|+..|.+ ..++++..| -|.+ .++.|
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~--~~~~~~~~~~~L~~~~n~~l 56 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSE--RLPIPSSSQLYLTTNSNGQL 56 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHh--hcCCCccceeEEEEeCCCee
Confidence 68999999885 3367899999999999999998 888888874 3444 34555
No 72
>PRK06437 hypothetical protein; Provisional
Probab=93.60 E-value=0.71 Score=29.88 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=38.8
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv~ 87 (135)
..++++...||.+| ++ ..++++...-+...|..+.. ++.|++||.| ++.
T Consensus 13 ~~~~i~~~~tv~dL---L~---~Lgi~~~~vaV~vNg~iv~~----------~~~L~dgD~Veiv~ 62 (67)
T PRK06437 13 KTIEIDHELTVNDI---IK---DLGLDEEEYVVIVNGSPVLE----------DHNVKKEDDVLILE 62 (67)
T ss_pred eEEEcCCCCcHHHH---HH---HcCCCCccEEEEECCEECCC----------ceEcCCCCEEEEEe
Confidence 57888888899888 43 36888999999999999973 3368999999 553
No 73
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.28 E-value=1.6 Score=29.78 Aligned_cols=73 Identities=14% Similarity=0.199 Sum_probs=58.5
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI--~~Gk~L~D~~t~d~~~L~~~~I~dG~tIl 85 (135)
.+-+|-||.++|+. ..-.+..+.++.+|-..|.. .|.+++..+|+ |-=|.+..... +.+|.++|+.+..+|+
T Consensus 4 ~~t~i~vRlP~G~r-~~rrF~~~~~L~~v~~fv~~---~g~~~~~f~L~t~FPRr~~~~~d~--~~TL~e~GL~P~~~Lf 77 (82)
T cd01773 4 PKARLMLRYPDGKR-EQIALPEQAKLLALVRHVQS---KGYPNERFELLTNFPRRKLSHLDY--DITLQEAGLCPQETVF 77 (82)
T ss_pred CeeEEEEECCCCCE-EEEEeCCCCcHHHHHHHHHh---cCCCCCCEEEecCCCCcccCCccc--CCCHHHcCCCCCcEEE
Confidence 56789999999976 77789999999999998875 57888999987 66666643222 3569999999999987
Q ss_pred E
Q 032742 86 A 86 (135)
Q Consensus 86 v 86 (135)
|
T Consensus 78 V 78 (82)
T cd01773 78 V 78 (82)
T ss_pred E
Confidence 6
No 74
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.42 E-value=0.43 Score=40.73 Aligned_cols=75 Identities=17% Similarity=0.269 Sum_probs=53.0
Q ss_pred EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec---CeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032742 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR---GKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (135)
Q Consensus 12 I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~---Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (135)
+++-..+.......-|.-.-||.+|+..+.. +.|+.+.+.||.|- |+.-..+..+-++-|.+|+|++||.++|-.
T Consensus 339 vk~l~~~~~v~~s~~I~~~~TV~D~~~~Ld~--~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvqe 416 (418)
T KOG2982|consen 339 VKALNSGPKVIASGLICMTRTVLDFMKILDP--KVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQE 416 (418)
T ss_pred eeeeccCCccccceEEEeehHHHHHHHHhcc--ccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeeec
Confidence 4444444444234556667799999999988 99999999999874 343333333334669999999999997743
No 75
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=92.30 E-value=0.2 Score=42.93 Aligned_cols=64 Identities=16% Similarity=0.229 Sum_probs=55.1
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEecCC
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVKPK 91 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~~p~ 91 (135)
+.+++..+.....|+..+.. .++++.+..-|+|+++.+..+.. .++.++++.+|+++..-.+..
T Consensus 15 ~~i~v~~dg~L~nl~aL~~~--d~g~~~~~~~li~n~~~l~s~~s---~~l~Q~g~~~~dsl~lr~ks~ 78 (380)
T KOG0012|consen 15 FPIPVTTDGELNNLAALCWK--DTGIVYDPSDLIYNPRPLVSNES---QGLTQIGLKDGDSLALRCKSS 78 (380)
T ss_pred eccccccccchhhHHHHHHH--HhCcccchhhcccCCCccccchh---hhhhhcccccceeEeccCCCC
Confidence 67888888999999999988 99999999999999999986643 569999999999996655443
No 76
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=92.22 E-value=0.39 Score=32.03 Aligned_cols=58 Identities=26% Similarity=0.352 Sum_probs=43.8
Q ss_pred ecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCcccc-CCCCCCEEEEEecC
Q 032742 27 VSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYL-QLSNGDSVIAAVKP 90 (135)
Q Consensus 27 v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~-~I~dG~tIlv~~~p 90 (135)
|+++++|.++++.+.. ......-....|.++|+.|.+... +.++ ++++|.++-++-+|
T Consensus 1 v~~~d~v~dvrq~L~~-~~~t~~~Tn~~L~~~g~~L~~~~e-----l~~i~~~~~~~~L~lve~p 59 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAE-SPETCYLTNFSLEHNGQRLDDFVE-----LSEIEGIKDGCVLELVEEP 59 (76)
T ss_pred CChhhHHHHHHHHHHh-CccccceeEEEEEECCCccCCchh-----hhhhhCCCCCcEEEEEecC
Confidence 4678899999999987 233467778999999999976655 6665 48889999444443
No 77
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=92.08 E-value=0.41 Score=32.98 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=35.7
Q ss_pred EEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCC---ceEEEe
Q 032742 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIE---NLRLVF 57 (135)
Q Consensus 11 ~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~---~QRLI~ 57 (135)
..++|+.+|.. +.+.+.+++.+.+|++.|+. +.|+... ...|-|
T Consensus 2 ~FK~~~~~Grv-hRf~~~~s~~~~~L~~~I~~--Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 2 AFKFKDPKGRV-HRFRLRPSESLEELRTLISQ--RLGDDDFETHLYALSY 48 (86)
T ss_pred cEEeeCCCCCE-EEEEecCCCCHHHHHHHHHH--HhCCccccCCcccEEE
Confidence 46788887755 88999999999999999999 9998874 444444
No 78
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=92.06 E-value=2.2 Score=27.60 Aligned_cols=60 Identities=20% Similarity=0.220 Sum_probs=42.7
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032742 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (135)
Q Consensus 9 ~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (135)
||+|++.... .+..++++...||.+|-+. .++++..-.+..+|..... +..+++||.| ++
T Consensus 4 mm~v~vng~~--~~~~~~~~~~~tv~~ll~~------l~~~~~~v~v~vNg~iv~~----------~~~l~~gD~Veii 64 (70)
T PRK08364 4 MIRVKVIGRG--IEKEIEWRKGMKVADILRA------VGFNTESAIAKVNGKVALE----------DDPVKDGDYVEVI 64 (70)
T ss_pred EEEEEEeccc--cceEEEcCCCCcHHHHHHH------cCCCCccEEEEECCEECCC----------CcCcCCCCEEEEE
Confidence 5666664432 2257888888999988653 4667777888889998853 3359999999 55
No 79
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=91.95 E-value=0.56 Score=30.60 Aligned_cols=46 Identities=28% Similarity=0.439 Sum_probs=36.5
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG 59 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~G 59 (135)
++|++.. ++ ..+.+.++.+.|..+|+.+|+. .++++.+..+|-|..
T Consensus 2 ~~vK~~~-~~-~~~~~~~~~~~s~~dL~~~i~~--~~~~~~~~~~l~Y~D 47 (81)
T smart00666 2 VDVKLRY-GG-ETRRLSVPRDISFEDLRSKVAK--RFGLDNQSFTLKYQD 47 (81)
T ss_pred ccEEEEE-CC-EEEEEEECCCCCHHHHHHHHHH--HhCCCCCCeEEEEEC
Confidence 4566666 33 3378999999999999999999 888887778887773
No 80
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=91.55 E-value=0.7 Score=31.52 Aligned_cols=46 Identities=20% Similarity=0.354 Sum_probs=38.2
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCee
Q 032742 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKV 61 (135)
Q Consensus 9 ~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~ 61 (135)
+++|+++. .+.|.++++.+..+|.++|.+ +.++|++..+|-|+-..
T Consensus 4 vvKV~f~~-----tIaIrvp~~~~y~~L~~ki~~--kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 4 VVKVHFKY-----TVAIQVARGLSYATLLQKISS--KLELPAEHITLSYKSEA 49 (80)
T ss_pred EEEEEEEE-----EEEEEcCCCCCHHHHHHHHHH--HhCCCchhcEEEeccCC
Confidence 34555543 378999999999999999999 99999999999998654
No 81
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=91.00 E-value=0.55 Score=30.66 Aligned_cols=48 Identities=25% Similarity=0.340 Sum_probs=39.0
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC
Q 032742 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG 59 (135)
Q Consensus 9 ~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~G 59 (135)
|+.|++...+... ..+.++.+.|..+|+.+|++ .++.+....+|-|..
T Consensus 1 t~~vK~~~~~~~~-~~~~~~~~~s~~~L~~~i~~--~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 1 TVRVKVRYGGDIR-RIISLPSDVSFDDLRSKIRE--KFGLLDEDFQLKYKD 48 (84)
T ss_dssp SEEEEEEETTEEE-EEEEECSTSHHHHHHHHHHH--HHTTSTSSEEEEEEE
T ss_pred CEEEEEEECCeeE-EEEEcCCCCCHHHHHHHHHH--HhCCCCccEEEEeeC
Confidence 4677777766543 33899999999999999999 999888888888865
No 82
>PRK07440 hypothetical protein; Provisional
Probab=90.84 E-value=1.8 Score=28.22 Aligned_cols=62 Identities=18% Similarity=0.229 Sum_probs=45.7
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (135)
.+|+|+|.- ...+++...||.+|-+ ..++++...-+-++|..+..+. ..+.-+++||.| ++
T Consensus 3 ~~m~i~vNG------~~~~~~~~~tl~~lL~------~l~~~~~~vav~~N~~iv~r~~------w~~~~L~~gD~IEIv 64 (70)
T PRK07440 3 NPITLQVNG------ETRTCSSGTSLPDLLQ------QLGFNPRLVAVEYNGEILHRQF------WEQTQVQPGDRLEIV 64 (70)
T ss_pred CceEEEECC------EEEEcCCCCCHHHHHH------HcCCCCCeEEEEECCEEeCHHH------cCceecCCCCEEEEE
Confidence 356666643 2567778889888743 3678888888999999998544 566779999999 65
Q ss_pred E
Q 032742 87 A 87 (135)
Q Consensus 87 ~ 87 (135)
.
T Consensus 65 ~ 65 (70)
T PRK07440 65 T 65 (70)
T ss_pred E
Confidence 4
No 83
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=90.32 E-value=2.4 Score=27.09 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=35.2
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032742 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (135)
Q Consensus 24 ~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (135)
.+++..++|+.+||.++.. ... -+||.|-...++. .|++||.|++.
T Consensus 9 ~~~~~~~~tl~~lr~~~k~--~~D------I~I~NGF~~~~d~----------~L~e~D~v~~I 54 (57)
T PF14453_consen 9 EIETEENTTLFELRKESKP--DAD------IVILNGFPTKEDI----------ELKEGDEVFLI 54 (57)
T ss_pred EEEcCCCcCHHHHHHhhCC--CCC------EEEEcCcccCCcc----------ccCCCCEEEEE
Confidence 5788888999999997744 222 5699999887544 58999999554
No 84
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=90.11 E-value=1.9 Score=27.80 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=37.1
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCC----CCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANHL----PIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~i----p~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
..++++...||.+|.+.+.+ ...- ......+..+|+.... +.-|++||.|.+
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~--~~~~~~~~~~~~~~v~vNg~~v~~----------~~~l~~gD~v~i 73 (80)
T cd00754 18 EELELPEGATVGELLDALEA--RYPGLLEELLARVRIAVNGEYVRL----------DTPLKDGDEVAI 73 (80)
T ss_pred EEEECCCCCcHHHHHHHHHH--HCchHHHhhhhcEEEEECCeEcCC----------CcccCCCCEEEE
Confidence 56777778999999999987 5421 2345667778887762 235999999943
No 85
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=89.89 E-value=1.7 Score=27.72 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=39.3
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032742 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (135)
Q Consensus 24 ~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv~ 87 (135)
..+++...|+.+| +. ..++++...-+.+.|..++.... ..+ |++||.| ++.
T Consensus 9 ~~~~~~~~tl~~l---l~---~l~~~~~~vav~~N~~iv~r~~~------~~~-L~~gD~ieIv~ 60 (65)
T PRK05863 9 QVEVDEQTTVAAL---LD---SLGFPEKGIAVAVDWSVLPRSDW------ATK-LRDGARLEVVT 60 (65)
T ss_pred EEEcCCCCcHHHH---HH---HcCCCCCcEEEEECCcCcChhHh------hhh-cCCCCEEEEEe
Confidence 4566777888777 44 36889999999999999986654 345 9999999 654
No 86
>PRK01777 hypothetical protein; Validated
Probab=89.89 E-value=3.7 Score=28.61 Aligned_cols=63 Identities=17% Similarity=0.146 Sum_probs=42.4
Q ss_pred ceEEEEEeCCCCCc--EEEEecCCCcHHHHHHHHHhccCCCCCCC-------ceEEEecCeecCCCCCCCCCCccccCCC
Q 032742 9 SVEITVKTIGPAPP--SRLSVSSPIKVRDLRKLIATSSANHLPIE-------NLRLVFRGKVLDDTQDDDDRDDVYLQLS 79 (135)
Q Consensus 9 ~m~I~VKt~~~~~~--~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~-------~QRLI~~Gk~L~D~~t~d~~~L~~~~I~ 79 (135)
+|+|.|-....... ..++++..+||.++=++ .|++.. .-.+...|+.-.- +..|+
T Consensus 3 ~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~------sgi~~~~pei~~~~~~vgI~Gk~v~~----------d~~L~ 66 (95)
T PRK01777 3 KIRVEVVYALPERQYLQRLTLQEGATVEEAIRA------SGLLELRTDIDLAKNKVGIYSRPAKL----------TDVLR 66 (95)
T ss_pred eeEEEEEEECCCceEEEEEEcCCCCcHHHHHHH------cCCCccCcccccccceEEEeCeECCC----------CCcCC
Confidence 78888886544432 34789999999988543 455443 2466677777753 33699
Q ss_pred CCCEE-EEE
Q 032742 80 NGDSV-IAA 87 (135)
Q Consensus 80 dG~tI-lv~ 87 (135)
+||.| ++-
T Consensus 67 dGDRVeIyr 75 (95)
T PRK01777 67 DGDRVEIYR 75 (95)
T ss_pred CCCEEEEec
Confidence 99999 664
No 87
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=89.72 E-value=1.5 Score=27.83 Aligned_cols=51 Identities=16% Similarity=0.239 Sum_probs=39.4
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032742 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (135)
Q Consensus 24 ~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (135)
.++++...||.+|.+. .+++++...+.+.|+....+. ..+.-|++||+| ++
T Consensus 8 ~~~~~~~~tv~~ll~~------l~~~~~~i~V~vNg~~v~~~~------~~~~~L~~gD~V~ii 59 (65)
T cd00565 8 PREVEEGATLAELLEE------LGLDPRGVAVALNGEIVPRSE------WASTPLQDGDRIEIV 59 (65)
T ss_pred EEEcCCCCCHHHHHHH------cCCCCCcEEEEECCEEcCHHH------cCceecCCCCEEEEE
Confidence 5677888899988754 457788888999999987543 345679999999 55
No 88
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=89.03 E-value=2.4 Score=26.64 Aligned_cols=52 Identities=21% Similarity=0.245 Sum_probs=39.2
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032742 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (135)
Q Consensus 24 ~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv~ 87 (135)
..+++...||.+|= . ..++++...-+.+.|..+.... ..+.-+++||.| ++.
T Consensus 9 ~~~~~~~~tl~~lL---~---~l~~~~~~vav~vNg~iv~r~~------~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 9 PRELPDGESVAALL---A---REGLAGRRVAVEVNGEIVPRSQ------HASTALREGDVVEIVH 61 (66)
T ss_pred EEEcCCCCCHHHHH---H---hcCCCCCeEEEEECCeEeCHHH------cCcccCCCCCEEEEEE
Confidence 45777788888774 3 3688888888999998887443 455679999999 653
No 89
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=88.62 E-value=3.7 Score=26.91 Aligned_cols=53 Identities=23% Similarity=0.346 Sum_probs=42.2
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEEe
Q 032742 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAAV 88 (135)
Q Consensus 24 ~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv~~ 88 (135)
.++++...|+.+| ++ ..+++++..-..++|...+.+. ..+..+++||.| ++..
T Consensus 11 ~~e~~~~~tv~dL---L~---~l~~~~~~vav~vNg~iVpr~~------~~~~~l~~gD~ievv~~ 64 (68)
T COG2104 11 EVEIAEGTTVADL---LA---QLGLNPEGVAVAVNGEIVPRSQ------WADTILKEGDRIEVVRV 64 (68)
T ss_pred EEEcCCCCcHHHH---HH---HhCCCCceEEEEECCEEccchh------hhhccccCCCEEEEEEe
Confidence 6778887899988 44 3789999999999999998654 466789999999 6643
No 90
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=88.54 E-value=1.9 Score=27.19 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=39.2
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032742 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (135)
Q Consensus 24 ~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv~ 87 (135)
.++++...||.+|.+. .+++++...+.++|..+..+. ..++.|++||.| ++.
T Consensus 7 ~~~~~~~~tv~~ll~~------l~~~~~~v~v~vN~~iv~~~~------~~~~~L~~gD~veii~ 59 (64)
T TIGR01683 7 PVEVEDGLTLAALLES------LGLDPRRVAVAVNGEIVPRSE------WDDTILKEGDRIEIVT 59 (64)
T ss_pred EEEcCCCCcHHHHHHH------cCCCCCeEEEEECCEEcCHHH------cCceecCCCCEEEEEE
Confidence 5677788899988764 456678888899999986443 345679999999 553
No 91
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=87.15 E-value=5 Score=26.22 Aligned_cols=52 Identities=19% Similarity=0.302 Sum_probs=35.9
Q ss_pred EEEEecCC-CcHHHHHHHHHhccCCC-CC--CCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032742 23 SRLSVSSP-IKVRDLRKLIATSSANH-LP--IENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (135)
Q Consensus 23 ~~i~v~~~-~TV~dLK~~Ia~~~~~~-ip--~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (135)
..++++.+ .||.+|.+.+.+ ... +- .....+..+|+...+ +.-|++|+.| ++
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~--~~p~l~~~~~~~~v~vn~~~v~~----------~~~l~dgDevai~ 74 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAK--EGPELAASRGQVMVAVNEEYVTD----------DALLNEGDEVAFI 74 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHH--hCchhhhhccceEEEECCEEcCC----------CcCcCCCCEEEEe
Confidence 46788877 899999999987 542 11 123456677776653 3369999999 44
No 92
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=87.10 E-value=3.4 Score=28.13 Aligned_cols=52 Identities=19% Similarity=0.251 Sum_probs=39.9
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032742 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (135)
Q Consensus 24 ~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv~ 87 (135)
..+++...||.+| +.+ .++++...-+-++|..++.+. ..+.-|++||.| ++.
T Consensus 27 ~~~~~~~~tl~~L---L~~---l~~~~~~vAVevNg~iVpr~~------w~~t~L~egD~IEIv~ 79 (84)
T PRK06083 27 SIQVDISSSLAQI---IAQ---LSLPELGCVFAINNQVVPRSE------WQSTVLSSGDAISLFQ 79 (84)
T ss_pred EEEcCCCCcHHHH---HHH---cCCCCceEEEEECCEEeCHHH------cCcccCCCCCEEEEEE
Confidence 4567778888877 433 578888888899999997554 567789999999 653
No 93
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=85.55 E-value=2.1 Score=28.90 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=27.4
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCC-CceEEEec
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANHLPI-ENLRLVFR 58 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~ip~-~~QRLI~~ 58 (135)
+.+.++++++..+|++.|+. .+++.. ....|=|.
T Consensus 12 ~r~~l~~~~~~~~L~~~i~~--r~~~~~~~~f~LkY~ 46 (82)
T cd06407 12 IRFRLPPSWGFTELKQEIAK--RFKLDDMSAFDLKYL 46 (82)
T ss_pred EEEEcCCCCCHHHHHHHHHH--HhCCCCCCeeEEEEE
Confidence 78999999999999999999 888764 44555444
No 94
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=84.98 E-value=5.7 Score=25.53 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=38.7
Q ss_pred EEEecCC-CcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032742 24 RLSVSSP-IKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (135)
Q Consensus 24 ~i~v~~~-~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv~ 87 (135)
..+++.. .||.+|= + ..++++...-+-++|..++.+. .....|++||.| ++.
T Consensus 9 ~~~~~~~~~tv~~lL---~---~l~~~~~~vav~vN~~iv~r~~------w~~~~L~~gD~iEIv~ 62 (67)
T PRK07696 9 QIEVPESVKTVAELL---T---HLELDNKIVVVERNKDILQKDD------HTDTSVFDGDQIEIVT 62 (67)
T ss_pred EEEcCCCcccHHHHH---H---HcCCCCCeEEEEECCEEeCHHH------cCceecCCCCEEEEEE
Confidence 3456665 5777764 3 3678888888899999998654 567789999999 654
No 95
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=84.68 E-value=3.9 Score=26.33 Aligned_cols=45 Identities=29% Similarity=0.339 Sum_probs=34.1
Q ss_pred EEEEEeCCCCCcEEEEec-CCCcHHHHHHHHHhccCCCCCCCceEEEecC
Q 032742 11 EITVKTIGPAPPSRLSVS-SPIKVRDLRKLIATSSANHLPIENLRLVFRG 59 (135)
Q Consensus 11 ~I~VKt~~~~~~~~i~v~-~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~G 59 (135)
.|+++..+. . +.+.++ .+.|..+|+++|.. .++++....+|-|..
T Consensus 2 ~vK~~~~~~-~-~~~~~~~~~~s~~~L~~~i~~--~~~~~~~~~~l~y~D 47 (81)
T cd05992 2 RVKVKYGGE-I-RRFVVVSRSISFEDLRSKIAE--KFGLDAVSFKLKYPD 47 (81)
T ss_pred cEEEEecCC-C-EEEEEecCCCCHHHHHHHHHH--HhCCCCCcEEEEeeC
Confidence 455555444 3 678888 88999999999999 888877666776665
No 96
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=83.97 E-value=7.5 Score=24.68 Aligned_cols=52 Identities=12% Similarity=0.139 Sum_probs=38.1
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032742 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (135)
Q Consensus 24 ~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv~ 87 (135)
..+++...||.+|-+. .+++.....+-..|..++.+. ....-|++||.| ++.
T Consensus 9 ~~~~~~~~tl~~ll~~------l~~~~~~vaVavN~~iv~r~~------w~~~~L~~gD~Ieii~ 61 (66)
T PRK08053 9 PMQCAAGQTVHELLEQ------LNQLQPGAALAINQQIIPREQ------WAQHIVQDGDQILLFQ 61 (66)
T ss_pred EEEcCCCCCHHHHHHH------cCCCCCcEEEEECCEEeChHH------cCccccCCCCEEEEEE
Confidence 5677788899988754 345556688889999987543 455579999999 553
No 97
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=82.71 E-value=2.7 Score=28.09 Aligned_cols=71 Identities=14% Similarity=0.098 Sum_probs=34.0
Q ss_pred EEEeCCCCCcEEEEecCC-CcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032742 13 TVKTIGPAPPSRLSVSSP-IKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK 89 (135)
Q Consensus 13 ~VKt~~~~~~~~i~v~~~-~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~~ 89 (135)
+-|..+......|.++.. .+|.+||..|.+....|-..+-.=.||....-+. -. -...-|.-+++|+|...
T Consensus 2 ~YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~~~lg~~~dfdL~i~na~t~ee-Y~-----dd~~~IprnssVivrRv 73 (74)
T PF08783_consen 2 HYKFKSQKDYDTITFDGTSISVFDLKREIIEKKKLGKGTDFDLVIYNAQTGEE-YK-----DDNELIPRNSSVIVRRV 73 (74)
T ss_dssp EEEETT-SSEEEEEESSSEEEHHHHHHHHHHHHT---TTTEEEEEEESSS--E-E------STT-EEETT--EEEEEE
T ss_pred eEEecccCCccEEEECCCeeEHHHHHHHHHHHhCCCcCCcCCEEEECCCCCCc-cC-----CCCeEEeCCCEEEEEeC
Confidence 344444544356888775 8999999999882233333332333455443321 11 11223555666666543
No 98
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=81.82 E-value=8.1 Score=24.30 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=35.3
Q ss_pred EEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032742 25 LSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (135)
Q Consensus 25 i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv~ 87 (135)
++++ ..|+.+|.+. .++++....+-++|..++.+. ..+..|++||.| ++.
T Consensus 10 ~~~~-~~tl~~Ll~~------l~~~~~~vavavN~~iv~~~~------~~~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 10 LQTE-ATTLALLLAE------LDYEGNWLATAVNGELVHKEA------RAQFVLHEGDRIEILS 60 (65)
T ss_pred EEcC-cCcHHHHHHH------cCCCCCeEEEEECCEEcCHHH------cCccccCCCCEEEEEE
Confidence 4443 3588888654 356667777889999987433 456679999999 653
No 99
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=78.64 E-value=9 Score=26.01 Aligned_cols=60 Identities=12% Similarity=0.205 Sum_probs=28.7
Q ss_pred EEecC-CCcHHHHHHHHHhccCCCCCC-C---ceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 25 LSVSS-PIKVRDLRKLIATSSANHLPI-E---NLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 25 i~v~~-~~TV~dLK~~Ia~~~~~~ip~-~---~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
+.++. .+|+++|-+.|-. .+.|+.. + ..++||.... .....--+++|+++||.+|+.|.|
T Consensus 2 v~~d~~~~TL~~lv~~Vlk-~~Lg~~~P~v~~~~~ilyd~de-~~~~~~l~k~L~elgi~~gs~L~v 66 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLK-KKLGMNEPDVSVGGTILYDSDE-EEYDDNLPKKLSELGIVNGSILTV 66 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCC-CCS--SSEEEEES-EEEE-SSS-SSSTTCTTSBGGGGT--TT-EEEE
T ss_pred EEEechhCcHHHHHHHHHH-hccCCCCCEEEeCCCEEEcCCc-chhhhcccCChhHcCCCCCCEEEE
Confidence 44555 4899999887743 1334322 1 3445554443 000111237799999999998855
No 100
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=77.62 E-value=9.5 Score=34.41 Aligned_cols=82 Identities=13% Similarity=0.278 Sum_probs=49.3
Q ss_pred CCceEEEEEeCCC-CCcEEEEecCCCcHHHHHHHHHhccCCCCCC------CceEEEec----Ce-ecCCCCCCC----C
Q 032742 7 SESVEITVKTIGP-APPSRLSVSSPIKVRDLRKLIATSSANHLPI------ENLRLVFR----GK-VLDDTQDDD----D 70 (135)
Q Consensus 7 ~~~m~I~VKt~~~-~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~------~~QRLI~~----Gk-~L~D~~t~d----~ 70 (135)
-.+++|.|-..++ ...+.+.|=.-+||.++|++|-.++-.+.|- +..-|.++ |+ .|.|.+... +
T Consensus 187 ~~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~ 266 (539)
T PF08337_consen 187 YKTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGG 266 (539)
T ss_dssp S-EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETT
T ss_pred eEEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCC
Confidence 3567777664432 2335677766689999999998877777543 33444332 23 455543211 1
Q ss_pred ----CCccccCCCCCCEE-EEEe
Q 032742 71 ----RDDVYLQLSNGDSV-IAAV 88 (135)
Q Consensus 71 ----~~L~~~~I~dG~tI-lv~~ 88 (135)
.+|..|+|.+|++| ++..
T Consensus 267 wkrLNTL~HY~V~dga~vaLv~k 289 (539)
T PF08337_consen 267 WKRLNTLAHYKVPDGATVALVPK 289 (539)
T ss_dssp EEE--BHHHHT--TTEEEEEEES
T ss_pred ceEeccHhhcCCCCCceEEEeec
Confidence 57899999999999 5543
No 101
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=76.82 E-value=15 Score=22.77 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=35.1
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032742 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (135)
Q Consensus 24 ~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv~ 87 (135)
.++++...|+.+|-+.+. ++ ....+.+.|.....+. ..+.-+++||.| ++.
T Consensus 9 ~~~~~~~~tl~~ll~~l~------~~-~~~~v~vN~~~v~~~~------~~~~~L~~gD~vei~~ 60 (65)
T PRK06944 9 TLSLPDGATVADALAAYG------AR-PPFAVAVNGDFVARTQ------HAARALAAGDRLDLVQ 60 (65)
T ss_pred EEECCCCCcHHHHHHhhC------CC-CCeEEEECCEEcCchh------cccccCCCCCEEEEEe
Confidence 567788889999876542 32 3456788998886432 334569999999 553
No 102
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=76.36 E-value=17 Score=24.48 Aligned_cols=49 Identities=22% Similarity=0.354 Sum_probs=37.4
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe-cCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF-RGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~-~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (135)
+...++..+||+++ |+ ..|+|.....+|+ +|+.-. + +|-+++|+.|-|.
T Consensus 25 ~~~~~~~~~tvkd~---IE---sLGVP~tEV~~i~vNG~~v~---------~-~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 25 FTHPFDGGATVKDV---IE---SLGVPHTEVGLILVNGRPVD---------F-DYRLKDGDRVAVY 74 (81)
T ss_pred eEEecCCCCcHHHH---HH---HcCCChHHeEEEEECCEECC---------C-cccCCCCCEEEEE
Confidence 45788888999887 54 4899999988764 777664 2 5679999999443
No 103
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=75.12 E-value=12 Score=31.77 Aligned_cols=53 Identities=15% Similarity=0.170 Sum_probs=41.2
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEEe
Q 032742 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAAV 88 (135)
Q Consensus 24 ~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv~~ 88 (135)
.++++...||.+|- . ..+++++..-+.++|+.+..++ ..++-|++||.| ++..
T Consensus 9 ~~el~e~~TL~dLL---~---~L~i~~~~VAVeVNgeIVpr~~------w~~t~LkeGD~IEII~~ 62 (326)
T PRK11840 9 PRQVPAGLTIAALL---A---ELGLAPKKVAVERNLEIVPRSE------YGQVALEEGDELEIVHF 62 (326)
T ss_pred EEecCCCCcHHHHH---H---HcCCCCCeEEEEECCEECCHHH------cCccccCCCCEEEEEEE
Confidence 45777788888774 3 3688999999999999997544 467789999999 6643
No 104
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=75.03 E-value=21 Score=23.48 Aligned_cols=53 Identities=21% Similarity=0.229 Sum_probs=34.8
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCC-----CCC------CceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANH-----LPI------ENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~-----ip~------~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
..++++ ..||.+|.+.+.+ ... +-. ....+..+|+....+. ...|++||.|.+
T Consensus 18 ~~v~~~-~~tv~~l~~~l~~--~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~--------~~~l~dgdev~i 81 (88)
T TIGR01687 18 EEIEIE-GKTVGDLLNELMA--RYPKEFSELFKEGLGLVPNVIILVNGRNVDWGL--------GTELKDGDVVAI 81 (88)
T ss_pred EEEEeC-CCCHHHHHHHHHH--HCcHHHHHhCccCCcccccEEEEECCEecCccC--------CCCCCCCCEEEE
Confidence 457776 8899999999987 542 101 2355667777665321 146899999944
No 105
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=74.90 E-value=6.1 Score=25.04 Aligned_cols=55 Identities=22% Similarity=0.343 Sum_probs=41.2
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCC--CCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANH--LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~--ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
..+.++...||++|.+.+.. ... .....-.+..+|+...+ . ..+..+++||.|.+
T Consensus 14 ~~~~~~~~~tv~~ll~~l~~--~~p~~~~~~~~~v~vN~~~v~~-~------~~~~~l~~gD~V~i 70 (77)
T PF02597_consen 14 EEIEVPEGSTVRDLLEALAE--RYPELALRDRVAVAVNGEIVPD-D------GLDTPLKDGDEVAI 70 (77)
T ss_dssp EEEEESSTSBHHHHHHHHCH--HTGGGHTTTTEEEEETTEEEGG-G------TTTSBEETTEEEEE
T ss_pred eEEecCCCCcHHHHHHHHHh--hccccccCccEEEEECCEEcCC-c------cCCcCcCCCCEEEE
Confidence 46788889999999999976 331 12377888999999876 2 34557899999943
No 106
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=73.39 E-value=18 Score=25.02 Aligned_cols=59 Identities=15% Similarity=0.059 Sum_probs=37.9
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCe----e-cCCCCCCCCCCccccCCCCCCEEEEEe
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGK----V-LDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk----~-L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (135)
++..+...+||+.+...+.+ .+.+ ...-||=-.+. . |.+.. .++.+.+|.+|.+|++=.
T Consensus 16 ~t~~FSk~DTI~~v~~~~rk--lf~i-~~E~RLW~~~~~~~~e~L~~~~----~Tv~da~L~~gQ~vliE~ 79 (88)
T PF14836_consen 16 LTKQFSKTDTIGFVEKEMRK--LFNI-QEETRLWNKYSENSYELLNNPE----ITVEDAGLYDGQVVLIEE 79 (88)
T ss_dssp EEEEE-TTSBHHHHHHHHHH--HCT--TS-EEEEEECTTTCEEEE--TT----SBTTTTT--TTEEEEEEE
T ss_pred hHhhccccChHHHHHHHHHH--HhCC-CccceehhccCCcchhhhCCCC----ccHHHccCcCCCEEEEEe
Confidence 55678889999999999988 8999 55577743222 1 32221 349999999999887644
No 107
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=73.02 E-value=9.7 Score=26.22 Aligned_cols=45 Identities=20% Similarity=0.304 Sum_probs=32.2
Q ss_pred EEEEEeCCCCCcEEEEecC-----CCcHHHHHHHHHhccCCCCCC-CceEEEecC
Q 032742 11 EITVKTIGPAPPSRLSVSS-----PIKVRDLRKLIATSSANHLPI-ENLRLVFRG 59 (135)
Q Consensus 11 ~I~VKt~~~~~~~~i~v~~-----~~TV~dLK~~Ia~~~~~~ip~-~~QRLI~~G 59 (135)
.|+++..+. .+.+.++. +.+..+|+++|++ .+++++ ....|-|.-
T Consensus 2 ~vKv~y~~~--~rRf~l~~~~~~~d~~~~~L~~kI~~--~f~l~~~~~~~l~Y~D 52 (91)
T cd06398 2 VVKVKYGGT--LRRFTFPVAENQLDLNMDGLREKVEE--LFSLSPDADLSLTYTD 52 (91)
T ss_pred EEEEEeCCE--EEEEEeccccccCCCCHHHHHHHHHH--HhCCCCCCcEEEEEEC
Confidence 355555333 25677774 7999999999999 899887 556666654
No 108
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=71.24 E-value=7.6 Score=26.33 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=32.1
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCe
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGK 60 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk 60 (135)
+.+.+++..+..+|.++|++ +...+++.-+|-|+-.
T Consensus 9 Vai~v~~g~~y~~L~~~ls~--kL~l~~~~~~LSY~~~ 44 (78)
T cd06411 9 VALRAPRGADVSSLRALLSQ--ALPQQAQRGQLSYRAP 44 (78)
T ss_pred EEEEccCCCCHHHHHHHHHH--HhcCChhhcEEEecCC
Confidence 55788999999999999999 9999999999988753
No 109
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=70.56 E-value=1.4 Score=37.02 Aligned_cols=59 Identities=20% Similarity=0.545 Sum_probs=0.0
Q ss_pred CceEEEEEeCCCCCcEEEEec---C--CCcHHHHHHHHHh----c----cCCCCCCCceE-----EEecCeecCCCCC
Q 032742 8 ESVEITVKTIGPAPPSRLSVS---S--PIKVRDLRKLIAT----S----SANHLPIENLR-----LVFRGKVLDDTQD 67 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~---~--~~TV~dLK~~Ia~----~----~~~~ip~~~QR-----LI~~Gk~L~D~~t 67 (135)
..|.|++|+.-+.. +.+.++ + +.||.++|..+++ + ..+++|.+..+ |.|+-|.+.|+++
T Consensus 77 ~sItV~Lks~rnp~-l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~kt 153 (309)
T PF12754_consen 77 KSITVHLKSLRNPP-LDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKT 153 (309)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred ceEEEEeecCCCCC-ceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCc
Confidence 46899999887654 443332 3 4789999999864 0 05678888888 9999999977777
No 110
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=69.86 E-value=16 Score=34.09 Aligned_cols=52 Identities=15% Similarity=0.223 Sum_probs=43.0
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecC
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLD 63 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~ 63 (135)
..|+|-+......+.+-++++.|+..|++.|+. .+|+|.+.|-|+|.|...-
T Consensus 314 ~vvhiFs~~~~~~~~~~~~~~ntl~~~~~~I~~--~Tgipe~~qeLL~e~~~~h 365 (732)
T KOG4250|consen 314 KVVHIFSMVQATSHEYYVHADNTLHSLIERISK--QTGIPEGKQELLFEGGLSH 365 (732)
T ss_pred heeEEEeeccceEEEEecChhhhHHHHHHHHHH--hhCCCCccceeeeecCccc
Confidence 445566655655577889999999999999999 9999999999999977643
No 111
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=69.50 E-value=14 Score=27.10 Aligned_cols=62 Identities=23% Similarity=0.374 Sum_probs=38.7
Q ss_pred EecC-CCcHHHHHHHHHhccCC--CCCC------CceEEEecCee---------cCCCC------CCCCCCccccCCCCC
Q 032742 26 SVSS-PIKVRDLRKLIATSSAN--HLPI------ENLRLVFRGKV---------LDDTQ------DDDDRDDVYLQLSNG 81 (135)
Q Consensus 26 ~v~~-~~TV~dLK~~Ia~~~~~--~ip~------~~QRLI~~Gk~---------L~D~~------t~d~~~L~~~~I~dG 81 (135)
.|+. +.||++|++.+.+.+.+ |++| +..|++.+.-- |+++. .+++.+|.++||.+.
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE 100 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE 100 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence 4776 88999999887664444 4544 44777755321 22222 135566888888888
Q ss_pred CEE-EEE
Q 032742 82 DSV-IAA 87 (135)
Q Consensus 82 ~tI-lv~ 87 (135)
..| +..
T Consensus 101 TEiSfF~ 107 (122)
T PF10209_consen 101 TEISFFN 107 (122)
T ss_pred ceeeeeC
Confidence 877 543
No 112
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=68.97 E-value=13 Score=25.36 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=26.4
Q ss_pred EEEEEeCCCCCcEEEEecC--CCcHHHHHHHHHhccCCCCC
Q 032742 11 EITVKTIGPAPPSRLSVSS--PIKVRDLRKLIATSSANHLP 49 (135)
Q Consensus 11 ~I~VKt~~~~~~~~i~v~~--~~TV~dLK~~Ia~~~~~~ip 49 (135)
+|++...+. ...+.+++ ..|..+|++.|+. .++++
T Consensus 2 ~vKaty~~d--~~rf~~~~~~~~~~~~L~~ev~~--rf~l~ 38 (81)
T cd06396 2 NLKVTYNGE--SQSFLVSDSENTTWASVEAMVKV--SFGLN 38 (81)
T ss_pred EEEEEECCe--EEEEEecCCCCCCHHHHHHHHHH--HhCCC
Confidence 344444333 36788888 7799999999999 99988
No 113
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=68.60 E-value=19 Score=31.16 Aligned_cols=68 Identities=21% Similarity=0.199 Sum_probs=49.3
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCC
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNG 81 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI--~~Gk~L~D~~t~d~~~L~~~~I~dG 81 (135)
.+-.|.||..+|++ ....++..-||.+++..|.. +.-+-+..-|-|+ |--|.|.|+ +.+|.+.+|.+-
T Consensus 304 PtTsIQIRLanG~R-lV~~fN~sHTv~DIR~fI~~-aRp~~~~~~F~L~~~FPpk~l~D~----sqTle~AgL~Ns 373 (380)
T KOG2086|consen 304 PTTSIQIRLANGTR-LVLKFNHSHTVSDIREFIDT-ARPGDSSTYFILMMAFPPKPLSDD----SQTLEEAGLLNS 373 (380)
T ss_pred CcceEEEEecCCce-eeeeccCcccHHHHHHHHHh-cCCCCcCCceeeeecCCCcccCCc----chhHHhccchhh
Confidence 46778889888987 77789999999999999987 2333444445554 666777643 345999988753
No 114
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=68.16 E-value=15 Score=27.16 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=34.0
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI 50 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~ 50 (135)
..+.|.|...+|.. ..+.+++.+|+.++-+.|+. +.|+..
T Consensus 2 ~~~~~~V~l~dg~~-~~~~~~~~~t~~ev~~~v~~--~~~l~~ 41 (207)
T smart00295 2 KPRVLKVYLLDGTT-LEFEVDSSTTAEELLETVCR--KLGIRE 41 (207)
T ss_pred CcEEEEEEecCCCE-EEEEECCCCCHHHHHHHHHH--HhCCCc
Confidence 35678888888875 78999999999999999999 999853
No 115
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=67.86 E-value=31 Score=22.55 Aligned_cols=48 Identities=23% Similarity=0.287 Sum_probs=28.7
Q ss_pred EEecC-CCcHHHHHHHHHhccCCC-----CCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032742 25 LSVSS-PIKVRDLRKLIATSSANH-----LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (135)
Q Consensus 25 i~v~~-~~TV~dLK~~Ia~~~~~~-----ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI 84 (135)
++++. .+||++|++.+.+ ... ......+.-.++..-. .+.-|++||.|
T Consensus 19 ~~v~~~~~tv~~l~~~L~~--~~~~~~~~~~~~~~~~aVN~~~~~----------~~~~l~dgDeV 72 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQ--KGDRWALALEDGKLLAAVNQTLVS----------FDHPLTDGDEV 72 (81)
T ss_pred EEecCCCCCHHHHHHHHHH--hCccHHhhhcCCCEEEEECCEEcC----------CCCCCCCCCEE
Confidence 45544 4799999999987 541 1222334444543322 12359999999
No 116
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=67.77 E-value=30 Score=30.67 Aligned_cols=72 Identities=14% Similarity=0.107 Sum_probs=50.1
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec----Cee--cCCCCCCCCCCccccCCCCCCE
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR----GKV--LDDTQDDDDRDDVYLQLSNGDS 83 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~----Gk~--L~D~~t~d~~~L~~~~I~dG~t 83 (135)
|-+.+|+..|. +.+++.++.+.+.|-.+|-.-+..+..|++..+.-+ |-. +..+++ +.++|++.|++
T Consensus 1 Mi~rfRsk~G~--~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt-----~~dlGL~hGqm 73 (571)
T COG5100 1 MIFRFRSKEGQ--RRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQT-----PDDLGLRHGQM 73 (571)
T ss_pred CeEEEecCCCc--eeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccC-----hhhhccccCcE
Confidence 45677887775 589999999999888777653445666777666432 221 223344 99999999999
Q ss_pred EEEEe
Q 032742 84 VIAAV 88 (135)
Q Consensus 84 Ilv~~ 88 (135)
+++--
T Consensus 74 Lyl~y 78 (571)
T COG5100 74 LYLEY 78 (571)
T ss_pred EEEEe
Confidence 96654
No 117
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=67.57 E-value=19 Score=24.77 Aligned_cols=34 Identities=9% Similarity=0.185 Sum_probs=27.6
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG 59 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~G 59 (135)
+.+.++++.+..+|.++|.+ ++++. ...++=|+-
T Consensus 14 ~~i~v~~~i~f~dL~~kIrd--kf~~~-~~~~iKykD 47 (86)
T cd06408 14 RYIMIGPDTGFADFEDKIRD--KFGFK-RRLKIKMKD 47 (86)
T ss_pred EEEEcCCCCCHHHHHHHHHH--HhCCC-CceEEEEEc
Confidence 67999999999999999999 99884 445555544
No 118
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=65.93 E-value=7 Score=25.75 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=31.4
Q ss_pred EEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 25 LSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 25 i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
+.++ .|+++|.+..++ ++|+++.+. +.-.|-.+.|=. -|.||+.+|+
T Consensus 22 i~lP--~SleeLl~ia~~--kfg~~~~~v-~~~dgaeIdDI~----------~IRDgD~L~~ 68 (69)
T PF11834_consen 22 IWLP--DSLEELLKIASE--KFGFSATKV-LNEDGAEIDDID----------VIRDGDHLYL 68 (69)
T ss_pred EEcC--ccHHHHHHHHHH--HhCCCceEE-EcCCCCEEeEEE----------EEEcCCEEEE
Confidence 4554 599999998888 999974332 334454444322 3899999965
No 119
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=65.55 E-value=20 Score=24.94 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=31.7
Q ss_pred EEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe
Q 032742 14 VKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF 57 (135)
Q Consensus 14 VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~ 57 (135)
++..+|.. ..+.|+.+.|..+|+.++++ .+++... ..|=|
T Consensus 17 l~Y~GG~t-r~i~V~r~~s~~el~~kl~~--~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGET-RIVSVDRSISFKELVSKLSE--LFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCce-EEEEEcCCCCHHHHHHHHHH--HhCCCCc-eEEEE
Confidence 56777755 77999999999999999999 8887765 44433
No 120
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=63.90 E-value=21 Score=23.70 Aligned_cols=67 Identities=15% Similarity=0.193 Sum_probs=39.2
Q ss_pred eEEEEEeCCCCCc--EEEEecCCCcHHHHHHHHHhccCCCCCCCce---EEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032742 10 VEITVKTIGPAPP--SRLSVSSPIKVRDLRKLIATSSANHLPIENL---RLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (135)
Q Consensus 10 m~I~VKt~~~~~~--~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~Q---RLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI 84 (135)
|.|+-|..+.... -.+.++..+||+++=.+|...+...+..... ..=+.|+... .++.|++||.|
T Consensus 2 irvytk~~g~~~d~~~~liL~~GaTV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq~Vg----------l~~~L~d~DvV 71 (75)
T cd01666 2 IRVYTKPKGQEPDFDEPVILRRGSTVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQRVG----------LDHVLEDEDVV 71 (75)
T ss_pred EEEEeCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHhCCeeEEeccCCcCCCeECC----------CCCEecCCCEE
Confidence 5677776666432 3488899999999998887522122221100 0013554443 24568899988
Q ss_pred -EE
Q 032742 85 -IA 86 (135)
Q Consensus 85 -lv 86 (135)
++
T Consensus 72 eI~ 74 (75)
T cd01666 72 QIV 74 (75)
T ss_pred EEe
Confidence 54
No 121
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=62.24 E-value=62 Score=28.36 Aligned_cols=76 Identities=13% Similarity=0.111 Sum_probs=50.9
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCC------CCCceEE-EecCeecCCCCCCCCCCccccCCCCCC
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHL------PIENLRL-VFRGKVLDDTQDDDDRDDVYLQLSNGD 82 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~i------p~~~QRL-I~~Gk~L~D~~t~d~~~L~~~~I~dG~ 82 (135)
.+|+|..... . ..+-++.+..|.||--.|-. ..+- .+..=.| -..|..|+.+.+ |.+.+|.||+
T Consensus 3 ~RVtV~~~~~-~-~DlaLPa~~PvaellP~ll~--~~~~~~~~~~~~~~w~L~r~gG~pL~~~~s-----L~~~gV~DG~ 73 (452)
T TIGR02958 3 CRVTVLAGRR-A-VDVALPADVPVAELIPDLVD--LLDDRGAAELGAVRWALARAGGSPLDPDAS-----LAEAGVRDGE 73 (452)
T ss_pred EEEEEeeCCe-e-eeeecCCCCcHHHHHHHHHH--HhCcccccCCCCcceEEecCCCCCCCCCCC-----HHHcCCCCCC
Confidence 3567776433 2 56888999999999877766 3332 1223333 256778887777 9999999999
Q ss_pred EEEEEe-cCCCCC
Q 032742 83 SVIAAV-KPKPPP 94 (135)
Q Consensus 83 tIlv~~-~p~~~~ 94 (135)
.+++.. ...+|+
T Consensus 74 ~L~L~p~~~~~p~ 86 (452)
T TIGR02958 74 LLVLVPASATEPA 86 (452)
T ss_pred eEEEeeCCCCCCC
Confidence 995554 444444
No 122
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=60.68 E-value=20 Score=24.81 Aligned_cols=66 Identities=11% Similarity=0.099 Sum_probs=41.2
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE--EEEecCCCCCcc
Q 032742 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV--IAAVKPKPPPRH 96 (135)
Q Consensus 24 ~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI--lv~~~p~~~~~~ 96 (135)
...++....++.||..++. +.++.-+.=.+......|..+++ |.+-+++-...| -+-+++....++
T Consensus 6 ~q~mDI~epl~~Lk~lLe~--Rl~~~L~~~~f~LQD~~L~~~k~-----L~dQcVqgeGlVQlnvQi~s~~~~~r 73 (88)
T PF11620_consen 6 MQHMDIREPLSTLKKLLER--RLGISLSDYEFWLQDIQLEPHKS-----LVDQCVQGEGLVQLNVQIKSNQGEPR 73 (88)
T ss_dssp EEEEESSSBGGGHHHHSHH--HH-S--SS-EEEETTEE--TTSB-----TTTSS----SEEEEEEEEE--TT--E
T ss_pred EEEEecCCcHHHHHHHHHH--hhCCCcCCCeEEeccceecCCcc-----HHHhhccccCEEEEEEEEEecCCCcc
Confidence 4567788899999999998 99999888888888888988888 999999887887 334444433333
No 123
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=59.93 E-value=34 Score=22.54 Aligned_cols=44 Identities=18% Similarity=0.126 Sum_probs=35.3
Q ss_pred EEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCe
Q 032742 14 VKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGK 60 (135)
Q Consensus 14 VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk 60 (135)
|--++|.. ..+.+.+..||.|+=+.+-+ +.|+.++.--+.+.|.
T Consensus 4 V~LPng~~-t~V~vrpg~ti~d~L~~~c~--kr~l~~~~~~v~~~~~ 47 (72)
T cd01760 4 VYLPNGQR-TVVPVRPGMSVRDVLAKACK--KRGLNPECCDVFLLGL 47 (72)
T ss_pred EECcCCCe-EEEEECCCCCHHHHHHHHHH--HcCCCHHHEEEEEecC
Confidence 44455654 67999999999999999988 9999999977766653
No 124
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.40 E-value=3.7 Score=36.55 Aligned_cols=58 Identities=21% Similarity=0.222 Sum_probs=50.3
Q ss_pred EEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032742 25 LSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK 89 (135)
Q Consensus 25 i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~~ 89 (135)
+......|-.+|...|+. +.|++-+..|.|-.||+|.-.++ +.+-|++.+..++|++.
T Consensus 54 ~k~sL~i~Gselqa~iak--klgi~enhvKci~~~Kils~~kt-----laeQglk~nq~~mv~~~ 111 (568)
T KOG2561|consen 54 KKCSLHITGSELQALIAK--KLGIKENHVKCIINGKILSCRKT-----LAEQGLKINQELMVAVG 111 (568)
T ss_pred hhcccccccHHHHHHHHH--HcCCchhhhheeeccceeecccc-----hhhhhhhhhhHHHHHhc
Confidence 455556889999999999 99999999999999999998888 99999999888855443
No 125
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=56.37 E-value=35 Score=23.45 Aligned_cols=36 Identities=8% Similarity=0.100 Sum_probs=29.3
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHh
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIAT 42 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~ 42 (135)
++.+.|.|...+...+.++.++.++|+.+|-+.+-.
T Consensus 14 ~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~ 49 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALK 49 (106)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHH
T ss_pred CCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHH
Confidence 457888898886766688999999999999888766
No 126
>smart00455 RBD Raf-like Ras-binding domain.
Probab=52.71 E-value=53 Score=21.28 Aligned_cols=41 Identities=20% Similarity=0.092 Sum_probs=34.8
Q ss_pred eCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC
Q 032742 16 TIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG 59 (135)
Q Consensus 16 t~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~G 59 (135)
.+++.. ..+.+.|..|+.|+=+.+-+ +.|+.++.-.+...|
T Consensus 6 LP~~~~-~~V~vrpg~tl~e~L~~~~~--kr~l~~~~~~v~~~g 46 (70)
T smart00455 6 LPDNQR-TVVKVRPGKTVRDALAKALK--KRGLNPECCVVRLRG 46 (70)
T ss_pred CCCCCE-EEEEECCCCCHHHHHHHHHH--HcCCCHHHEEEEEcC
Confidence 445544 67999999999999999988 999999998888866
No 127
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=51.11 E-value=42 Score=22.98 Aligned_cols=45 Identities=11% Similarity=0.183 Sum_probs=34.6
Q ss_pred EEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC
Q 032742 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG 59 (135)
Q Consensus 11 ~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~G 59 (135)
+.+++..+.. +.+.++..-|-..|+++|.. .+++|+...-+.|-.
T Consensus 2 ~fKv~~~g~~--RRf~~~~~pt~~~L~~kl~~--Lf~lp~~~~~vtYiD 46 (82)
T cd06397 2 QFKSSFLGDT--RRIVFPDIPTWEALASKLEN--LYNLPEIKVGVTYID 46 (82)
T ss_pred eEEEEeCCce--EEEecCCCccHHHHHHHHHH--HhCCChhHeEEEEEc
Confidence 4566665543 57888888899999999999 999998776666643
No 128
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=49.89 E-value=49 Score=23.11 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=29.2
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHh
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIAT 42 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~ 42 (135)
++.+.|.|...+...++++.+++++|+.+|-+.+-.
T Consensus 15 ~~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~ 50 (108)
T smart00144 15 ANKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFT 50 (108)
T ss_pred CCeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHH
Confidence 456778888777666688999999999999887665
No 129
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=49.72 E-value=83 Score=22.19 Aligned_cols=37 Identities=24% Similarity=0.142 Sum_probs=28.7
Q ss_pred EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCC
Q 032742 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIE 51 (135)
Q Consensus 12 I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~ 51 (135)
|.|--.++.. .++.++.++||.|+-..++. ++.++..
T Consensus 5 IRIFr~D~Tf-~Tls~~l~tTv~eli~~L~r--K~~l~~~ 41 (97)
T cd01775 5 IRVFRSDGTF-TTLSCPLNTTVSELIPQLAK--KFYLPSG 41 (97)
T ss_pred EEEEecCCcE-EEEEcCCcCcHHHHHHHHHH--hhcCCCC
Confidence 4444555654 67999999999999999988 8877763
No 130
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=48.98 E-value=66 Score=25.07 Aligned_cols=38 Identities=29% Similarity=0.259 Sum_probs=23.1
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCC---ceEE--EecCeec
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANHLPIE---NLRL--VFRGKVL 62 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~---~QRL--I~~Gk~L 62 (135)
+.+-++.+.||.||-+.++. +.+++.+ ..|| ++.||..
T Consensus 36 ~~~~vpk~~tV~Dll~~l~~--k~~~~~~~~~~lrl~ev~~~ki~ 78 (213)
T PF14533_consen 36 YELLVPKTGTVSDLLEELQK--KVGFSEEGTGKLRLWEVSNHKIY 78 (213)
T ss_dssp EEE--BTT-BHHHHHHHHHT--T----TT----EEEEEEETTEEE
T ss_pred EEEEECCCCCHHHHHHHHHH--HcCCCcCCcCcEEEEEeECCEEE
Confidence 45778999999999999998 8888765 4554 5677663
No 131
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=47.98 E-value=44 Score=26.73 Aligned_cols=46 Identities=24% Similarity=0.294 Sum_probs=33.5
Q ss_pred ceEEEEEeCCCC--CcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE
Q 032742 9 SVEITVKTIGPA--PPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV 56 (135)
Q Consensus 9 ~m~I~VKt~~~~--~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI 56 (135)
.+.|.++-.... ..+.+.++..+|-.+|-++|++ ..+++|+..||.
T Consensus 176 rv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~--~l~~dP~~lr~~ 223 (249)
T PF12436_consen 176 RVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAE--HLNVDPEHLRFF 223 (249)
T ss_dssp EEEEEEEETTSTT---EEEEEETT--HHHHHHHHHH--HHTS-GGGEEEE
T ss_pred eEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHH--HHCCChHHEEEE
Confidence 366777753222 2478999999999999999999 999999999985
No 132
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=46.79 E-value=60 Score=22.28 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=30.7
Q ss_pred EEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCc
Q 032742 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN 52 (135)
Q Consensus 11 ~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~ 52 (135)
-|+|-...+.. -.|.|+..+|++++=+.+++ +.++..+.
T Consensus 4 vvkv~~~Dg~s-K~l~V~~~~Ta~dV~~~L~~--K~h~~~~~ 42 (85)
T cd01787 4 VVKVYSEDGAS-KSLEVDERMTARDVCQLLVD--KNHCQDDS 42 (85)
T ss_pred EEEEEecCCCe-eEEEEcCCCcHHHHHHHHHH--HhCCCCCC
Confidence 35566666755 78999999999999999988 88865544
No 133
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=45.69 E-value=92 Score=20.97 Aligned_cols=62 Identities=19% Similarity=0.273 Sum_probs=39.6
Q ss_pred eCCCCCcEE-EEecCCCcHHHHHHHHHhccCCCCCCCceEEEec-CeecCCCCCCCCCCccccCCCCCCEE
Q 032742 16 TIGPAPPSR-LSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR-GKVLDDTQDDDDRDDVYLQLSNGDSV 84 (135)
Q Consensus 16 t~~~~~~~~-i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~-Gk~L~D~~t~d~~~L~~~~I~dG~tI 84 (135)
+...+.++. ++|+.++-...+-+..++ ++++|+..--+|-. |--+...++ -.+.-++-|+.+
T Consensus 10 tsDp~~p~kv~sVPE~apftaVlkfaAe--eF~vp~~tsaiItndG~GInP~QT-----ag~vflKhGseL 73 (76)
T PF03671_consen 10 TSDPKLPYKVISVPEEAPFTAVLKFAAE--EFKVPPATSAIITNDGVGINPQQT-----AGNVFLKHGSEL 73 (76)
T ss_dssp STSSTS-EEEEEEETTSBHHHHHHHHHH--HTTS-SSSEEEEESSS-EE-TTSB-----HHHHHHHT-SEE
T ss_pred ccCCCCcceEEecCCCCchHHHHHHHHH--HcCCCCceEEEEecCCcccccchh-----hhhhHhhcCcEe
Confidence 445666654 799999878777777888 89999888777654 444444455 555556666666
No 134
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=45.58 E-value=65 Score=20.68 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=31.3
Q ss_pred ceEEEEEeCCCCC-cEEEEecCCCcHHHHHHHHHhccCCCC--CCCceEE
Q 032742 9 SVEITVKTIGPAP-PSRLSVSSPIKVRDLRKLIATSSANHL--PIENLRL 55 (135)
Q Consensus 9 ~m~I~VKt~~~~~-~~~i~v~~~~TV~dLK~~Ia~~~~~~i--p~~~QRL 55 (135)
.++|+.-...... ..+|.|+..+|+.++-+++.+ ++++ .+..-.|
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~--k~~l~~~~~~y~L 51 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALE--KFGLAEDPSDYCL 51 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHH--HTTTSSSGGGEEE
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHH--HhCCCCCCCCEEE
Confidence 3455554433322 256999999999999999988 9998 3444555
No 135
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=42.69 E-value=86 Score=19.79 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=31.2
Q ss_pred EEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCC-CCceEEEe
Q 032742 14 VKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLP-IENLRLVF 57 (135)
Q Consensus 14 VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip-~~~QRLI~ 57 (135)
|..+++.. ..+++++++|+.+|=+.|+. ..++. .+-.=|.|
T Consensus 1 V~llD~~~-~~~~v~~~~t~~~l~~~v~~--~l~l~e~~~FgL~~ 42 (80)
T PF09379_consen 1 VRLLDGTT-KTFEVDPKTTGQDLLEQVCD--KLGLKEKEYFGLQY 42 (80)
T ss_dssp EEESSEEE-EEEEEETTSBHHHHHHHHHH--HHTTSSGGGEEEEE
T ss_pred CCCcCCCc-EEEEEcCCCcHHHHHHHHHH--HcCCCCccEEEEEE
Confidence 34455654 78999999999999999998 77875 33366666
No 136
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=42.33 E-value=98 Score=22.48 Aligned_cols=54 Identities=15% Similarity=0.301 Sum_probs=44.0
Q ss_pred CceEEEEEeCCCCCc---EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecC
Q 032742 8 ESVEITVKTIGPAPP---SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLD 63 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~---~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~ 63 (135)
..++|.+|-.++..- ....|+++.|++-+-..|.. ..+++++.|=.+|--....
T Consensus 29 ~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk--~Lkl~as~slflYVN~sFA 85 (116)
T KOG3439|consen 29 RKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKK--FLKLQASDSLFLYVNNSFA 85 (116)
T ss_pred ceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHH--HhCCcccCeEEEEEcCccC
Confidence 458888888777542 23789999999999999988 8999999999988776664
No 137
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=41.77 E-value=87 Score=20.46 Aligned_cols=40 Identities=23% Similarity=0.223 Sum_probs=28.5
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC
Q 032742 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI 50 (135)
Q Consensus 9 ~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~ 50 (135)
.++|+.-...+....+|.|+.++|..++=+.+.+ +++++.
T Consensus 4 ~lrV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~--k~~l~~ 43 (90)
T smart00314 4 VLRVYVDDLPGGTYKTLRVSSRTTARDVIQQLLE--KFHLTD 43 (90)
T ss_pred EEEEecccCCCCcEEEEEECCCCCHHHHHHHHHH--HhCCCC
Confidence 3455554321222257999999999999999988 899875
No 138
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=41.30 E-value=32 Score=23.08 Aligned_cols=20 Identities=15% Similarity=0.209 Sum_probs=16.3
Q ss_pred EEEEecCCCcHHHHHHHHHh
Q 032742 23 SRLSVSSPIKVRDLRKLIAT 42 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~ 42 (135)
+.++++.++|+.++|+.+-+
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~ 21 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWE 21 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHH
T ss_pred eEEEccCcCcHHHHHHHHHH
Confidence 46889999999999997766
No 139
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=41.13 E-value=13 Score=31.15 Aligned_cols=41 Identities=24% Similarity=0.395 Sum_probs=35.3
Q ss_pred EEEEec-CCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCC
Q 032742 23 SRLSVS-SPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDT 65 (135)
Q Consensus 23 ~~i~v~-~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~ 65 (135)
..+.+. ....+..+|.+++. ..+++++-|++.+.|..|+|+
T Consensus 295 ~~~~~~~~~~~~~~~k~k~~~--~~~i~~~~q~~~~~~~~l~d~ 336 (341)
T KOG0007|consen 295 IKITVQSLSENVASLKEKIAD--ESQIPANKQKLRGEGAFLKDN 336 (341)
T ss_pred eeecccccccccccccccccc--ccccchhheeeccCCcccCcc
Confidence 344454 55779999999999 999999999999999999987
No 140
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=40.01 E-value=1e+02 Score=19.90 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=26.1
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCC--CCceEEE
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANHLP--IENLRLV 56 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~ip--~~~QRLI 56 (135)
.+|.|+.++|..++-+.+.+ ++++. +..-.|+
T Consensus 15 kti~V~~~~t~~~Vi~~~l~--k~~l~~~~~~y~L~ 48 (87)
T cd01768 15 KTLRVSKDTTAQDVIQQLLK--KFGLDDDPEDYALV 48 (87)
T ss_pred EEEEECCCCCHHHHHHHHHH--HhCCcCCcccEEEE
Confidence 57999999999999999988 99887 4444443
No 141
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=39.90 E-value=1.2e+02 Score=20.48 Aligned_cols=49 Identities=24% Similarity=0.377 Sum_probs=31.8
Q ss_pred EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe--cCeecCCC
Q 032742 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF--RGKVLDDT 65 (135)
Q Consensus 12 I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~--~Gk~L~D~ 65 (135)
..|.+..... ..-|-. .|..||+.+..+ .++++.+..+|+. -|-...|+
T Consensus 5 ~kv~~~~r~~--k~Gv~A-~sL~eL~~K~~~--~l~~~~~~~~lvL~eDGT~VddE 55 (78)
T PF02017_consen 5 FKVRNHDRSV--KKGVAA-SSLEELLEKACD--KLQLPEEPVRLVLEEDGTEVDDE 55 (78)
T ss_dssp EEEEETTSSC--EEEEEE-SSHHHHHHHHHH--HHT-SSSTCEEEETTTTCBESSC
T ss_pred EEEecCCCCc--eEeEEc-CCHHHHHHHHHH--HhCCCCcCcEEEEeCCCcEEccH
Confidence 3455544443 333333 589999999998 9999988888765 45555543
No 142
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=39.77 E-value=70 Score=21.27 Aligned_cols=32 Identities=13% Similarity=-0.029 Sum_probs=23.6
Q ss_pred EEEEecCCCcHHHHHHHHHhccCC-CCCCCceEEE
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSAN-HLPIENLRLV 56 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~-~ip~~~QRLI 56 (135)
+-.-..++.|+++|+..|.+ ++ .++|....+.
T Consensus 5 FLhlt~~~~tl~~L~~eI~~--~f~kLYP~~~~~~ 37 (73)
T PF10407_consen 5 FLHLTDPNNTLSQLKEEIEE--RFKKLYPNEPELE 37 (73)
T ss_pred EEEEeCCCCcHHHHHHHHHH--HHHHHCCCCCCce
Confidence 33446789999999999988 66 4666666554
No 143
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=39.27 E-value=1.3e+02 Score=28.37 Aligned_cols=62 Identities=18% Similarity=0.138 Sum_probs=43.6
Q ss_pred EEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEEec
Q 032742 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAAVK 89 (135)
Q Consensus 11 ~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv~~~ 89 (135)
+|+|-|++|. .+.++..+|+.||=-.|+. ..|.--..= -..|+... -++.+++|++| ++-.+
T Consensus 405 ~V~VfTPkG~---~~~Lp~gaT~lDfAy~iHt--~iG~~~~gA--kvng~~v~----------l~~~L~~GD~VeIits~ 467 (743)
T PRK10872 405 RVYVFTPKGD---VVDLPAGSTPLDFAYHIHS--DVGHRCIGA--KIGGRIVP----------FTYQLQMGDQIEIITQK 467 (743)
T ss_pred eEEEECCCCC---eEEcCCCCcHHHHHHHHhH--HHHhhceEE--EECCEECC----------CCcCCCCCCEEEEEeCC
Confidence 5889998885 7899999999999877876 444221111 26676654 35679999999 65443
No 144
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=39.07 E-value=43 Score=22.78 Aligned_cols=39 Identities=10% Similarity=0.245 Sum_probs=33.2
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceE-EEecCeecC
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLR-LVFRGKVLD 63 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QR-LI~~Gk~L~ 63 (135)
+++.|++++|=-++|+.|+. .+++.+...+ +++.|+.--
T Consensus 23 ~tF~V~~~atK~~Ik~aie~--iy~V~V~~Vnt~~~~gk~kR 62 (91)
T PF00276_consen 23 YTFEVDPRATKTEIKEAIEK--IYGVKVKKVNTMNYPGKKKR 62 (91)
T ss_dssp EEEEETTTSTHHHHHHHHHH--HHTSEEEEEEEEEETSEEEE
T ss_pred EEEEEeCCCCHHHHHHHHHh--hcCCCeeEEEEeEeCCCceE
Confidence 68999999999999999999 9999988844 468887654
No 145
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=36.17 E-value=39 Score=24.70 Aligned_cols=35 Identities=9% Similarity=0.036 Sum_probs=28.0
Q ss_pred EecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecC
Q 032742 26 SVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLD 63 (135)
Q Consensus 26 ~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~ 63 (135)
=|+.+.||++|...|.. ..+++++.. .+|-+..+.
T Consensus 46 lVP~d~tV~qF~~iIRk--rl~l~~~k~-flfVnn~lp 80 (121)
T PTZ00380 46 ALPRDATVAELEAAVRQ--ALGTSAKKV-TLAIEGSTP 80 (121)
T ss_pred EcCCCCcHHHHHHHHHH--HcCCChhHE-EEEECCccC
Confidence 58999999999999988 889999984 455554544
No 146
>PF09662 Phenyl_P_gamma: Phenylphosphate carboxylase gamma subunit (Phenyl_P_gamma); InterPro: IPR014097 Members of this protein family are the gamma subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. The gamma subunit has no known homologues.
Probab=36.02 E-value=48 Score=22.71 Aligned_cols=48 Identities=15% Similarity=0.224 Sum_probs=33.1
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeec
Q 032742 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVL 62 (135)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L 62 (135)
+...+++.||+.+.+. ...+-.-+|+.++. ...-.|++..+-|.-.+|
T Consensus 16 Eg~elel~VR~LnPG~-------~KY~~~~VkA~vSs--dp~~yPd~L~VRfgRGql 63 (84)
T PF09662_consen 16 EGKELELTVRDLNPGI-------HKYTYQWVKAEVSS--DPDKYPDKLQVRFGRGQL 63 (84)
T ss_pred CCCEEEEEEEecCcch-------hHHHHHhhhhhhcC--CcccCChheEEecccCcc
Confidence 4577999999887764 23455788888876 666666776666654444
No 147
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=35.73 E-value=1e+02 Score=22.32 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=33.4
Q ss_pred CCceEEEEEeCCCCCcE-EEEecCCCcHHHHHHHHHhccCCCCC
Q 032742 7 SESVEITVKTIGPAPPS-RLSVSSPIKVRDLRKLIATSSANHLP 49 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~-~i~v~~~~TV~dLK~~Ia~~~~~~ip 49 (135)
.+.|..++...+++... .|.|++++|..++-+.+-+ ++.+.
T Consensus 21 ~gvmrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLe--KFk~d 62 (112)
T cd01782 21 HGVMRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSE--KFRPD 62 (112)
T ss_pred eeEEEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHH--Hhccc
Confidence 35699999998887633 3899999999999999988 88754
No 148
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=35.23 E-value=96 Score=21.20 Aligned_cols=38 Identities=13% Similarity=0.234 Sum_probs=32.1
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceE-EEecCeec
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLR-LVFRGKVL 62 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QR-LI~~Gk~L 62 (135)
+.+.|++.+|=.++|+.|+. .+++.+...+ +++.|+.-
T Consensus 23 ~~F~V~~~a~K~eIK~aie~--lf~VkV~~VnT~~~~gk~k 61 (92)
T PRK05738 23 YVFEVAPDATKPEIKAAVEK--LFGVKVESVNTLNVKGKTK 61 (92)
T ss_pred EEEEECCCCCHHHHHHHHHH--HcCCceeEEEEEEeCCcee
Confidence 78999999999999999999 9999988844 46776654
No 149
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=35.00 E-value=95 Score=19.20 Aligned_cols=58 Identities=21% Similarity=0.202 Sum_probs=35.7
Q ss_pred EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032742 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (135)
Q Consensus 12 I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (135)
|.|.++.|. ..+++..+|+.|+=..|.. .. .-.-.--...|+... -++.|++|++| ++
T Consensus 1 I~v~lpdG~---~~~~~~g~T~~d~A~~I~~--~l--~~~~~~A~Vng~~vd----------l~~~L~~~d~v~ii 59 (60)
T PF02824_consen 1 IRVYLPDGS---IKELPEGSTVLDVAYSIHS--SL--AKRAVAAKVNGQLVD----------LDHPLEDGDVVEII 59 (60)
T ss_dssp EEEEETTSC---EEEEETTBBHHHHHHHHSH--HH--HHCEEEEEETTEEEE----------TTSBB-SSEEEEEE
T ss_pred CEEECCCCC---eeeCCCCCCHHHHHHHHCH--HH--HhheeEEEEcCEECC----------CCCCcCCCCEEEEE
Confidence 456666663 5679999999999888875 22 111122245665543 24568899988 54
No 150
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=33.84 E-value=71 Score=21.60 Aligned_cols=58 Identities=19% Similarity=0.311 Sum_probs=36.6
Q ss_pred EEecCCCcHHHHHHHHHhccCCCC-------CCCceEEEecCe-ecCCCCCCC--CCCccccCCCCCCEEEE
Q 032742 25 LSVSSPIKVRDLRKLIATSSANHL-------PIENLRLVFRGK-VLDDTQDDD--DRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 25 i~v~~~~TV~dLK~~Ia~~~~~~i-------p~~~QRLI~~Gk-~L~D~~t~d--~~~L~~~~I~dG~tIlv 86 (135)
|++++++|+.+|-+.+.+ ...+ ..+.-.|++.+- .|+. .+.. +++|.++ +.+|+.|+|
T Consensus 1 i~v~~~~TL~~lid~L~~--~~~~qlk~PSlt~~~k~LYm~~pp~Lee-~Tr~NL~k~l~eL-~~~g~ei~V 68 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCE--KPEFQLKKPSLTTANKTLYMQSPPSLEE-ATRPNLSKKLKEL-LSDGEEITV 68 (84)
T ss_dssp EEESTTSBSHHHHHHHHH--STTT--SS-EEESSEEEEEESSSHHHHH-HTGGGGSSBTTTT-HHSSEEEEE
T ss_pred CCcCccchHHHHHHHHHh--ChhhhcCCCcccCCCceEEEeCCHHHHH-HhhhhhhhhHHHH-hcCCCEEEE
Confidence 578999999999999988 5332 334455655554 1211 1111 1447777 888888866
No 151
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=33.09 E-value=46 Score=22.46 Aligned_cols=20 Identities=10% Similarity=0.135 Sum_probs=17.3
Q ss_pred EEEEecCCCcHHHHHHHHHh
Q 032742 23 SRLSVSSPIKVRDLRKLIAT 42 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~ 42 (135)
+.+.++.++|+.++|+.+-+
T Consensus 2 i~l~v~~~aTl~~IK~~lw~ 21 (78)
T smart00143 2 VTLRVLREATLSTIKHELFK 21 (78)
T ss_pred eeEEccccccHHHHHHHHHH
Confidence 46788999999999988876
No 152
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=33.05 E-value=40 Score=22.65 Aligned_cols=60 Identities=27% Similarity=0.338 Sum_probs=37.8
Q ss_pred HHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCC-CCCCEEEEEecCCCCCcccc
Q 032742 34 RDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQL-SNGDSVIAAVKPKPPPRHLR 98 (135)
Q Consensus 34 ~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I-~dG~tIlv~~~p~~~~~~~~ 98 (135)
+.|.+-|+....+-+.-++++|-.+|..=.+.+. +.+.-+ -|+|+|++++.|..|+=|.-
T Consensus 8 eal~~Tl~tg~~~y~SRSR~~lW~KGetSG~~q~-----v~~i~~DCD~D~ll~~V~~~G~aCHtg 68 (75)
T PF01502_consen 8 EALEKTLETGRATYYSRSRNRLWRKGETSGNTQK-----VVEIRLDCDGDALLFKVEQVGPACHTG 68 (75)
T ss_dssp HHHHHHHHHSB-EEEETTTTEEEETTTTTS--EE-----EEEEEE-TTSSEEEEEEEESS-SSTTS
T ss_pred HHHHHHHHhCcEEEEEccCCcEeeEECCCCCEEE-----EEEEEecCCCCeEEEEEEeCCCCccCC
Confidence 4455556551122256788999999977665544 555444 47899999998887766654
No 153
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=31.12 E-value=1.6e+02 Score=19.62 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=33.4
Q ss_pred CcHHHHHHHHHhccCCCCCCCceEEEe--cCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032742 31 IKVRDLRKLIATSSANHLPIENLRLVF--RGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (135)
Q Consensus 31 ~TV~dLK~~Ia~~~~~~ip~~~QRLI~--~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (135)
.|..+|+.+..+ +++++....+|.+ -|-..+|+.. . ..+.++..++++.
T Consensus 19 ~sL~eL~~K~~~--~l~l~~~~~~l~L~eDGT~VddEey-----F--~tLp~nt~l~~L~ 69 (74)
T smart00266 19 SSLEELLSKVCD--KLALPDSPVTLVLEEDGTIVDDEEY-----F--QTLPDNTELMALE 69 (74)
T ss_pred CCHHHHHHHHHH--HhCCCCCCcEEEEecCCcEEccHHH-----H--hcCCCCcEEEEEc
Confidence 489999999999 9999977777754 6777765543 2 2355555445443
No 154
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=30.45 E-value=2.3e+02 Score=26.19 Aligned_cols=62 Identities=24% Similarity=0.148 Sum_probs=42.6
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEEe
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAAV 88 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv~~ 88 (135)
=+|+|-|++|. .+.++..+|+.||=-.|.. ..|.-. ..--..|+... .++.+++|++| ++-.
T Consensus 360 ~~i~vfTPkG~---~~~lp~gst~~DfAy~ih~--~~g~~~--~~a~vng~~v~----------l~~~l~~gd~vei~t~ 422 (683)
T TIGR00691 360 EEIYVFTPKGD---VVELPSGSTPVDFAYAVHT--DVGNKC--TGAKVNGKIVP----------LDKELENGDVVEIITG 422 (683)
T ss_pred CceEEECCCCe---EEEcCCCCCHHHHHHHHhH--HhHhce--eEEEECCEECC----------CCccCCCCCEEEEEeC
Confidence 46788888884 7899999999999877766 443222 11225666553 35679999999 5543
No 155
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=30.30 E-value=1.2e+02 Score=27.12 Aligned_cols=82 Identities=12% Similarity=0.202 Sum_probs=61.7
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEE--EecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRL--VFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRL--I~~Gk~L~D~~t~d~~~L~~~~I~dG~tIl 85 (135)
....|.|+-++|.. ++=.++.++-+..++..|.. ..++.....-| .|--+..-+++. +++|.++.|-+...|+
T Consensus 313 d~~rLqiRLPdGss-fte~Fps~~vL~~vr~yvrq--~~~i~~g~f~LatpyPRReft~eDy--~KtllEl~L~psaalv 387 (506)
T KOG2507|consen 313 DDVRLQIRLPDGSS-FTEKFPSTSVLRMVRDYVRQ--NQTIGLGAFDLATPYPRREFTDEDY--DKTLLELRLFPSAALV 387 (506)
T ss_pred ceeEEEEecCCccc-hhhcCCcchHHHHHHHHHHh--cccccccceeeccccccccccchhh--hhhHHHhccCCcceEE
Confidence 45889999999976 77788888889999999987 77776666554 466666655433 4679999999888887
Q ss_pred EEecCCCCC
Q 032742 86 AAVKPKPPP 94 (135)
Q Consensus 86 v~~~p~~~~ 94 (135)
|+.+..+..
T Consensus 388 vlpk~r~t~ 396 (506)
T KOG2507|consen 388 VLPKKRATV 396 (506)
T ss_pred EEecCCcce
Confidence 776665553
No 156
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=29.89 E-value=1e+02 Score=21.30 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=27.4
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCC-CCceEEE
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANHLP-IENLRLV 56 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~ip-~~~QRLI 56 (135)
-++-|.|.+|+.+|=+.+|+ ++++. |+.-.|.
T Consensus 16 KTL~V~P~~tt~~vc~lcA~--Kf~V~qPe~y~LF 48 (87)
T cd01776 16 KTLLVRPYITTEDVCQLCAE--KFKVTQPEEYSLF 48 (87)
T ss_pred eeeecCCCCcHHHHHHHHHH--HhccCChhheeEE
Confidence 57999999999999999999 99875 7776663
No 157
>PF07929 PRiA4_ORF3: Plasmid pRiA4b ORF-3-like protein; InterPro: IPR012912 Members of this family are similar to the protein product of ORF-3 (Q44206 from SWISSPROT) found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process []. Other proteins found in this family are annotated as being putative TnpR resolvases (Q9LCU7 from SWISSPROT, Q50439 from SWISSPROT), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor (Q7UEI4 from SWISSPROT) and in fact carries a LexA DNA binding domain (IPR006199 from INTERPRO), but no references were found to expand on this. ; PDB: 2I1S_A.
Probab=29.74 E-value=90 Score=23.30 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=26.1
Q ss_pred ceEEEEEeC--CCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCce
Q 032742 9 SVEITVKTI--GPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENL 53 (135)
Q Consensus 9 ~m~I~VKt~--~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~Q 53 (135)
..+|+|.-. ....-+.|.|+.+.|+.+|=..|+. .++..-..+
T Consensus 4 ~y~lkV~L~~~~p~iwRri~Vp~~~tl~~Lh~~Iq~--afgw~~~HL 48 (179)
T PF07929_consen 4 VYQLKVSLKGSKPPIWRRIEVPADITLADLHEVIQA--AFGWDDDHL 48 (179)
T ss_dssp EEEEEEEETT-SS-EEEEEEEETT-BHHHHHHHHHH--HTT----S-
T ss_pred EEEEEEEEcCCCCCeEEEEEECCCCCHHHHHHHHHH--HhCcCCCEe
Confidence 344555443 3333256999999999999999988 888765543
No 158
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=29.69 E-value=1.2e+02 Score=20.63 Aligned_cols=57 Identities=26% Similarity=0.285 Sum_probs=29.6
Q ss_pred EecCCCcHHHHHHHHHhccCCCCCCCceEEEecCe-------ecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 26 SVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGK-------VLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 26 ~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk-------~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
+++..+||++|=+.+.+ .. +..+.+++..+. .|-++..-.-..-.++.+++||.|.+
T Consensus 24 ~~~~~~tV~dll~~L~~--~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i 87 (94)
T cd01764 24 DGEKPVTVGDLLDYVAS--NL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVF 87 (94)
T ss_pred cCCCCCcHHHHHHHHHH--hC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEE
Confidence 33356799999988876 43 444444443221 11111110000113567999999944
No 159
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=28.31 E-value=38 Score=21.59 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=21.9
Q ss_pred ccccccccCCCcchHHHHHHHHhccccccC
Q 032742 105 DDDLDLFKLPQSTSRWKRKLLLFSPQQVKA 134 (135)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (135)
.+.+++ ..|.+.++=+|++++-|-+++-+
T Consensus 15 ~~~~eL-~Fp~~ls~~eRriih~la~~lGL 43 (60)
T cd02639 15 RMRDEL-AFPSSLSPAERRIVHLLASRLGL 43 (60)
T ss_pred CCceEE-EcCCCCCHHHHHHHHHHHHHcCC
Confidence 334445 33999999999999999887754
No 160
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=28.30 E-value=1.1e+02 Score=20.93 Aligned_cols=43 Identities=14% Similarity=0.146 Sum_probs=29.1
Q ss_pred EEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCc-eEEEe
Q 032742 13 TVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN-LRLVF 57 (135)
Q Consensus 13 ~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~-QRLI~ 57 (135)
++|..-+..-+...++++.|..+|.+++.+ .+.+..++ ..+-|
T Consensus 2 ~~K~~y~gdi~it~~d~~~s~e~L~~~v~~--~c~~~~~q~ft~kw 45 (83)
T cd06404 2 RVKAAYNGDIMITSIDPSISLEELCNEVRD--MCRFHNDQPFTLKW 45 (83)
T ss_pred eEEEEecCcEEEEEcCCCcCHHHHHHHHHH--HhCCCCCCcEEEEE
Confidence 344332333267799999999999999999 77775543 44433
No 161
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=28.17 E-value=42 Score=26.17 Aligned_cols=36 Identities=8% Similarity=0.070 Sum_probs=23.2
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCc-----eEEEecCe
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANHLPIEN-----LRLVFRGK 60 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~-----QRLI~~Gk 60 (135)
+.+.|.++.|+.++|+.|+. ++|++... .-++..++
T Consensus 135 F~f~v~~gE~f~~tK~Rl~~--rlgv~~keF~K~Kfaiv~~~~ 175 (213)
T PF14533_consen 135 FLFVVKPGETFSDTKERLQK--RLGVSDKEFEKWKFAIVQNSR 175 (213)
T ss_dssp EEEEEETT--HHHHHHHHHH--HH---HHHHTT-EEEEEETTE
T ss_pred EEEEeeCCCcHHHHHHHHHH--HhCCChhhheeEEEEEEecCC
Confidence 44789999999999999999 99987433 44455554
No 162
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=27.58 E-value=2e+02 Score=19.40 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=34.7
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe--cCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032742 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF--RGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (135)
Q Consensus 24 ~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~--~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (135)
..-|-. .|..+|+.+..+ +++++....+|++ -|-..+|+.. . .-+.++..++++.
T Consensus 15 k~GV~A-~sL~eL~~K~~~--~l~l~~~~~~lvL~eDGTeVddEeY-----F--~tLp~nT~l~~l~ 71 (78)
T cd01615 15 KKGVAA-SSLEELLSKACE--KLKLPSAPVTLVLEEDGTEVDDEEY-----F--QTLPDNTVLMLLE 71 (78)
T ss_pred eEEEEc-CCHHHHHHHHHH--HcCCCCCCeEEEEeCCCcEEccHHH-----H--hcCCCCcEEEEEC
Confidence 334433 489999999998 9999766666654 5666665443 2 2355555555543
No 163
>KOG4361 consensus BCL2-associated athanogene-like proteins and related BAG family chaperone regulators [Signal transduction mechanisms]
Probab=27.40 E-value=44 Score=28.56 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=50.3
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHH---HHHHHHHhccCCCCCCCce--EEEecCeecCCCCCCCCCCccccCCCCCCE
Q 032742 9 SVEITVKTIGPAPPSRLSVSSPIKVR---DLRKLIATSSANHLPIENL--RLVFRGKVLDDTQDDDDRDDVYLQLSNGDS 83 (135)
Q Consensus 9 ~m~I~VKt~~~~~~~~i~v~~~~TV~---dLK~~Ia~~~~~~ip~~~Q--RLI~~Gk~L~D~~t~d~~~L~~~~I~dG~t 83 (135)
++.|.+.+..-- +.+.+.+-.+.+ ++++...+ ..++....+ +++|.++.+.|... .++..+.++-+.
T Consensus 61 ~~~v~~~~~~~~--~~~~i~p~~~~g~~~d~a~~~~~--~ag~sh~d~~~k~~y~~~e~rd~~l----~l~~~g~p~~sk 132 (344)
T KOG4361|consen 61 GIRVQIEYGQLG--HGLAIVPQYPSGNALDLAKPLTE--DAGLSHYDQEVKLVYVDKELRDQSL----RLSSAGVPDASK 132 (344)
T ss_pred Cccceeeecccc--cccccccccccccchhhhccccc--ccceeecccccccceeccccccccc----ccccccCccccc
Confidence 455555553332 455566655555 77766666 677776666 99999999987765 488889988888
Q ss_pred EEEEecC
Q 032742 84 VIAAVKP 90 (135)
Q Consensus 84 Ilv~~~p 90 (135)
+.++..+
T Consensus 133 ~~~~~~~ 139 (344)
T KOG4361|consen 133 INVVPDP 139 (344)
T ss_pred ceeccCh
Confidence 8555433
No 164
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=26.98 E-value=1.5e+02 Score=19.83 Aligned_cols=23 Identities=13% Similarity=0.211 Sum_probs=19.4
Q ss_pred EEEEecCCCcHHHHHHHHHhccC
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSA 45 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~ 45 (135)
+.+.++.+.|-.++.++|.+++.
T Consensus 12 REl~ies~~s~dev~~~v~~Al~ 34 (74)
T PF11305_consen 12 RELVIESDQSADEVEAAVTDALA 34 (74)
T ss_pred ceEEEecCCCHHHHHHHHHHHHh
Confidence 58899999999999999998333
No 165
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=26.39 E-value=1.4e+02 Score=23.82 Aligned_cols=77 Identities=25% Similarity=0.324 Sum_probs=46.6
Q ss_pred CCceEEEEEeCCCCC-cEE----EEecCCCcHHHHHHHHHhccCCCCCCCceEEEec----Ce--ecCCCCCCCCCCccc
Q 032742 7 SESVEITVKTIGPAP-PSR----LSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR----GK--VLDDTQDDDDRDDVY 75 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~-~~~----i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~----Gk--~L~D~~t~d~~~L~~ 75 (135)
+..+-|++|.-.... +.. +-|+.+.+|.+|-..|.+ ..|+|++..=++|- ++ .++...+ +..
T Consensus 66 ~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~--~~g~p~~t~l~lyEEi~~~~ie~i~~~~t-----~~~ 138 (249)
T PF12436_consen 66 SDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINE--RAGLPPDTPLLLYEEIKPNMIEPIDPNQT-----FEK 138 (249)
T ss_dssp TTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHH--HHT--TT--EEEEEEEETTEEEE--SSSB-----HHH
T ss_pred CCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHH--HcCCCCCCceEEEEEeccceeeEcCCCCc-----hhh
Confidence 456888888433322 122 568999999999999998 89999876544443 22 2444445 999
Q ss_pred cCCCCCCEEEEEecC
Q 032742 76 LQLSNGDSVIAAVKP 90 (135)
Q Consensus 76 ~~I~dG~tIlv~~~p 90 (135)
..|.+||.|++-..+
T Consensus 139 ~el~~GdIi~fQ~~~ 153 (249)
T PF12436_consen 139 AELQDGDIICFQRAP 153 (249)
T ss_dssp TT--TTEEEEEEE--
T ss_pred cccCCCCEEEEEecc
Confidence 999999999776644
No 166
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=26.00 E-value=2.2e+02 Score=19.39 Aligned_cols=67 Identities=21% Similarity=0.210 Sum_probs=33.2
Q ss_pred eEEEEEeCCCCC--cEEEEecCCCcHHHHHHH--HHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-
Q 032742 10 VEITVKTIGPAP--PSRLSVSSPIKVRDLRKL--IATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV- 84 (135)
Q Consensus 10 m~I~VKt~~~~~--~~~i~v~~~~TV~dLK~~--Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI- 84 (135)
|+|.|-...... -..++++..+||.+-=++ |.+ ....+..+..++=.-||.-.- +..+++||-|
T Consensus 1 i~VeV~yA~p~~q~~~~l~vp~GtTv~~Ai~~Sgi~~-~~p~idl~~~~vGIfGk~~~~----------d~~L~~GDRVE 69 (84)
T PF03658_consen 1 IRVEVAYALPERQVILTLEVPEGTTVAQAIEASGILE-QFPEIDLEKNKVGIFGKLVKL----------DTVLRDGDRVE 69 (84)
T ss_dssp EEEEEEEEETTCEEEEEEEEETT-BHHHHHHHHTHHH-H-TT--TTTSEEEEEE-S--T----------T-B--TT-EEE
T ss_pred CEEEEEEECCCeEEEEEEECCCcCcHHHHHHHcCchh-hCcccCcccceeeeeeeEcCC----------CCcCCCCCEEE
Confidence 455555443333 245899999999876542 211 033567788888555666543 3358999999
Q ss_pred EEE
Q 032742 85 IAA 87 (135)
Q Consensus 85 lv~ 87 (135)
+..
T Consensus 70 IYR 72 (84)
T PF03658_consen 70 IYR 72 (84)
T ss_dssp EE-
T ss_pred Eec
Confidence 664
No 167
>PRK10113 cell division modulator; Provisional
Probab=24.17 E-value=37 Score=22.66 Aligned_cols=16 Identities=31% Similarity=0.852 Sum_probs=13.4
Q ss_pred cccCCCcchHHHHHHH
Q 032742 110 LFKLPQSTSRWKRKLL 125 (135)
Q Consensus 110 ~~~~~~~~~~~~~~~~ 125 (135)
.|-+|+++.||-.++-
T Consensus 58 aFs~PEsAQRWAnQir 73 (80)
T PRK10113 58 AFSVPESAQRWANQIR 73 (80)
T ss_pred ccCCcHHHHHHHHHhh
Confidence 3999999999987663
No 168
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.
Probab=23.71 E-value=2e+02 Score=20.16 Aligned_cols=42 Identities=14% Similarity=0.075 Sum_probs=28.7
Q ss_pred CCceEEEEEeCCCCCc-EEEEecCCCcHHHHHHHHHhccCCCCCC
Q 032742 7 SESVEITVKTIGPAPP-SRLSVSSPIKVRDLRKLIATSSANHLPI 50 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~-~~i~v~~~~TV~dLK~~Ia~~~~~~ip~ 50 (135)
.++++|+-=++.-..+ .+|.|+.++|+.++-...-. ++|+..
T Consensus 2 ~g~iKVY~G~L~~~~~y~sv~V~~~tt~~dvv~eaL~--kfGl~~ 44 (97)
T cd01783 2 KEVVKVYPGWLRVGVAYVSIRVNKDTTVQDVILEVLP--LFGLQA 44 (97)
T ss_pred CceEEEecCccccCcceEEEEecccchHHHHHHHHHH--HhCccc
Confidence 3456666555433333 35899999999999877767 788654
No 169
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=22.98 E-value=2.5e+02 Score=18.95 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=36.0
Q ss_pred eEEEEEeCCCCCcE---EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCee
Q 032742 10 VEITVKTIGPAPPS---RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKV 61 (135)
Q Consensus 10 m~I~VKt~~~~~~~---~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~ 61 (135)
++|.+|..+.-..+ .+-|+.+.|+++|...|.. +.++.+++-=.+|-+..
T Consensus 2 v~i~~~~~g~~p~l~k~kflv~~~~tv~~~~~~lrk--~L~l~~~~slflyvnn~ 54 (87)
T cd01612 2 VTIRFKPIGSAPILKQKVFKISATQSFQAVIDFLRK--RLKLKASDSLFLYINNS 54 (87)
T ss_pred eEEEEEECCCCccccccEEEeCCCCCHHHHHHHHHH--HhCCCccCeEEEEECCc
Confidence 56777776664322 3679999999999999988 77777766444555554
No 170
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=22.71 E-value=1.3e+02 Score=21.20 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=23.7
Q ss_pred EEEecCeecCCCCCCCCCCccccCCCC-CCEEEEEecCC
Q 032742 54 RLVFRGKVLDDTQDDDDRDDVYLQLSN-GDSVIAAVKPK 91 (135)
Q Consensus 54 RLI~~Gk~L~D~~t~d~~~L~~~~I~d-G~tIlv~~~p~ 91 (135)
.|-|.||.|..+.+ |++|-=+| -.+|+|+..++
T Consensus 3 ~LW~aGK~l~~~k~-----l~dy~GkNEKtKiivKl~~~ 36 (98)
T PF11069_consen 3 QLWWAGKELQRGKK-----LSDYIGKNEKTKIIVKLQKR 36 (98)
T ss_pred eEEeccccccCCCc-----HHHhcCCCcceeEEEEeccC
Confidence 36799999988888 98884333 34568877665
No 171
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=22.39 E-value=2.7e+02 Score=19.14 Aligned_cols=69 Identities=13% Similarity=0.059 Sum_probs=47.5
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCC-C--CC--CC-ceEEEecC--eecCCCCCCCCCCccccCCCC
Q 032742 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSAN-H--LP--IE-NLRLVFRG--KVLDDTQDDDDRDDVYLQLSN 80 (135)
Q Consensus 9 ~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~-~--ip--~~-~QRLI~~G--k~L~D~~t~d~~~L~~~~I~d 80 (135)
.+-|..+..+....+-+.|+.+.|+.++=++++. .. | ++ +. -.|+-++| ..+..+.+ +.+.||++
T Consensus 3 ~fPl~~~F~gDFv~~Lv~VDt~dTmdqVA~k~A~--HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~t-----Vaeagl~P 75 (85)
T PF06234_consen 3 LFPLTANFEGDFVLQLVPVDTEDTMDQVAAKVAH--HSVGRRVAPRPGAPLRVRRQGDTQPFPRSMT-----VAEAGLQP 75 (85)
T ss_dssp EEEEEEEETT-SBEEEEEEETT-BHHHHHHHHHT--TTTTTSS---TTSEEEEEETTTSSEE-TT-B-----GGGHT--T
T ss_pred ccceeEeeccceEEEEEEeCCCCcHHHHHHHHhh--hhcceecCCCCCCEEEEEecCCCccCCCccE-----ehhcCCCc
Confidence 3456666666766556899999999999999987 32 3 33 33 47888899 88988888 99999999
Q ss_pred CCEE
Q 032742 81 GDSV 84 (135)
Q Consensus 81 G~tI 84 (135)
-+.|
T Consensus 76 ~e~v 79 (85)
T PF06234_consen 76 MEWV 79 (85)
T ss_dssp TEEE
T ss_pred ceEE
Confidence 8888
No 172
>CHL00030 rpl23 ribosomal protein L23
Probab=22.39 E-value=1.7e+02 Score=20.20 Aligned_cols=36 Identities=11% Similarity=0.077 Sum_probs=29.9
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceE-EEecCe
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLR-LVFRGK 60 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QR-LI~~Gk 60 (135)
+.+.|+.++|=.++|++|+. .+++.+...+ ++..|+
T Consensus 22 y~F~V~~~anK~eIK~avE~--lf~VkV~~VNt~~~~~k 58 (93)
T CHL00030 22 YTFDVDSGSTKTEIKHWIEL--FFGVKVIAVNSHRLPRK 58 (93)
T ss_pred EEEEECCCCCHHHHHHHHHH--HhCCeEEEEEEEEcCCC
Confidence 78999999999999999998 8898877744 345565
No 173
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=22.27 E-value=2.5e+02 Score=18.71 Aligned_cols=41 Identities=12% Similarity=0.150 Sum_probs=33.7
Q ss_pred CCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCee
Q 032742 18 GPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKV 61 (135)
Q Consensus 18 ~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~ 61 (135)
+|+. ..+.+.+..||.++=..+-+ +.|+.++---+...|+.
T Consensus 8 dg~~-T~V~vrpG~ti~d~L~klle--kRgl~~~~~~vf~~g~~ 48 (73)
T cd01817 8 DGST-TVVPTRPGESIRDLLSGLCE--KRGINYAAVDLFLVGGD 48 (73)
T ss_pred CCCe-EEEEecCCCCHHHHHHHHHH--HcCCChhHEEEEEecCC
Confidence 4443 56899999999999999988 99999998888776753
No 174
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=22.25 E-value=55 Score=19.59 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=14.6
Q ss_pred cchHHHHHHHHhccccc
Q 032742 116 STSRWKRKLLLFSPQQV 132 (135)
Q Consensus 116 ~~~~~~~~~~~~~~~~~ 132 (135)
+.++|+...-.|.+||+
T Consensus 1 ~~s~~~~~~~~f~~nk~ 17 (56)
T PF12911_consen 1 SRSPWKDAWRRFRRNKL 17 (56)
T ss_pred CCCHHHHHHHHHHhCch
Confidence 35789999999999986
No 175
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=21.82 E-value=1.5e+02 Score=20.78 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=25.9
Q ss_pred EEecCCCcHHHHHHHHHhccCCCCCCCc-eEEEecCeecCC
Q 032742 25 LSVSSPIKVRDLRKLIATSSANHLPIEN-LRLVFRGKVLDD 64 (135)
Q Consensus 25 i~v~~~~TV~dLK~~Ia~~~~~~ip~~~-QRLI~~Gk~L~D 64 (135)
+=|+.+.||++|...|.. ...+++++ .=|..++.....
T Consensus 37 fLvp~~~tv~qf~~~ir~--rl~l~~~~alfl~Vn~~lp~~ 75 (104)
T PF02991_consen 37 FLVPKDLTVGQFVYIIRK--RLQLSPEQALFLFVNNTLPST 75 (104)
T ss_dssp EEEETTSBHHHHHHHHHH--HTT--TTS-EEEEBTTBESST
T ss_pred EEEcCCCchhhHHHHhhh--hhcCCCCceEEEEEcCcccch
Confidence 347889999999999988 88887776 444555533333
No 176
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=21.68 E-value=97 Score=23.40 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=17.6
Q ss_pred CCCCCccccCCCCCCEE-EEEecCC
Q 032742 68 DDDRDDVYLQLSNGDSV-IAAVKPK 91 (135)
Q Consensus 68 ~d~~~L~~~~I~dG~tI-lv~~~p~ 91 (135)
+|+++|...+++-||.| +....|.
T Consensus 115 ddnktL~~~kf~iGD~lDVaI~~p~ 139 (151)
T KOG3391|consen 115 DDNKTLQQTKFEIGDYLDVAITPPN 139 (151)
T ss_pred CccchhhhCCccccceEEEEecCcc
Confidence 34455999999999999 5555443
No 177
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=21.19 E-value=5e+02 Score=22.33 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=35.7
Q ss_pred CceEEEEEeCCCCCcEEEEecC-CCcHHHHHHHHHhccCCCCCCCceEEEecCeecC
Q 032742 8 ESVEITVKTIGPAPPSRLSVSS-PIKVRDLRKLIATSSANHLPIENLRLVFRGKVLD 63 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~-~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~ 63 (135)
.+|--.+|+..... .|.++. ..+|-+||..|-.+-+.|---+=+=|+|.|..-+
T Consensus 3 svI~YrFkSqkn~S--RI~FdGTGl~vfdlKrEII~q~Klg~g~DFdLl~yn~~tnE 57 (427)
T COG5222 3 SVINYRFKSQKNFS--RISFDGTGLPVFDLKREIINQRKLGSGKDFDLLFYNGETNE 57 (427)
T ss_pred ceeEEEeeccCCcc--eeEeccCCccHHHHHHHHHHhhhccCCccceEEEecCCccc
Confidence 44555666655543 566665 5899999988766334444456688899997665
No 178
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=21.01 E-value=1.9e+02 Score=20.20 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=30.2
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceE-EEecCe
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLR-LVFRGK 60 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QR-LI~~Gk 60 (135)
+++.|++++|=-++|+.|++ .+++-+.... |+..|+
T Consensus 24 ~vF~V~~~AtK~~IK~AvE~--lF~VkV~kVNTl~~k~k 60 (94)
T COG0089 24 YVFIVDPDATKPEIKAAVEE--LFGVKVEKVNTLNTKGK 60 (94)
T ss_pred EEEEECCCCCHHHHHHHHHH--HhCCeEEEEEEEEeCCc
Confidence 78999999999999999999 9998887744 355554
No 179
>COG2258 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.43 E-value=68 Score=25.58 Aligned_cols=52 Identities=25% Similarity=0.365 Sum_probs=31.5
Q ss_pred CCCCCCEEEEEecCCCC---Ccc---ccCCCCCCccccccccCCCcchHHHHHHHHhc
Q 032742 77 QLSNGDSVIAAVKPKPP---PRH---LRDDTCIDDDDLDLFKLPQSTSRWKRKLLLFS 128 (135)
Q Consensus 77 ~I~dG~tIlv~~~p~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (135)
.|+.||+|.+...|.+- +.. .-+++.+.+.-.....+|+-+++|++++-.-+
T Consensus 150 ~v~~gD~l~l~~r~~~~~tv~~~~~~~~~~~~~~~~l~~~l~~~~ls~~~~~~~~k~~ 207 (210)
T COG2258 150 KVRAGDPLKLIPRPSPEVTVARVNQLLYSDPFNLDQLRRALALPALSPSWRRTLEKRL 207 (210)
T ss_pred eecCCCceEEecCCCCCccHHHHHHHHcCCcccHHHHHHHhhchhhhHHHHHHHHhhh
Confidence 57889999665555432 111 11332333333335999999999999986544
No 180
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=20.41 E-value=60 Score=31.84 Aligned_cols=58 Identities=10% Similarity=-0.037 Sum_probs=46.6
Q ss_pred EecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEEecC
Q 032742 26 SVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAAVKP 90 (135)
Q Consensus 26 ~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv~~~p 90 (135)
-+....++--.|.++.+ .+|||.-.++|++.|..++++.. ++.|+...+.+. .....|
T Consensus 340 ~~~~~~~~~~~~p~~~~--qtgipi~~~~l~~vg~~~n~d~P-----~s~~~~e~~~~~p~~~asp 398 (1143)
T KOG4248|consen 340 LHVVRPMSHYTTPMVLQ--QTGIPIQINVLTTVGMTGNGDRP-----PSTPNAEAPPPGPGQAASP 398 (1143)
T ss_pred eeecchhhhccCceeee--cccccccccceeeecccccCCCC-----CCccccccCCCCCccccCc
Confidence 34444455556888988 99999999999999999999999 889999998888 434433
Done!