Query 032742
Match_columns 135
No_of_seqs 111 out of 1109
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 08:18:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032742.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032742hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3plu_A Ubiquitin-like modifier 99.8 7.3E-20 2.5E-24 126.9 8.5 72 5-84 17-88 (93)
2 4a20_A Ubiquitin-like protein 99.8 4.1E-19 1.4E-23 123.7 10.5 75 7-89 17-95 (98)
3 2lxa_A Ubiquitin-like protein 99.8 1.4E-19 4.7E-24 123.6 7.8 76 9-92 1-80 (87)
4 2wyq_A HHR23A, UV excision rep 99.8 3.6E-19 1.2E-23 118.2 9.7 76 8-91 4-82 (85)
5 3m62_B UV excision repair prot 99.8 1.5E-19 5.2E-24 126.5 7.6 75 9-91 1-76 (106)
6 4dwf_A HLA-B-associated transc 99.8 4.5E-19 1.6E-23 119.4 9.1 76 6-90 2-77 (90)
7 1uh6_A Ubiquitin-like 5; beta- 99.8 2.6E-19 8.8E-24 125.5 7.5 71 6-84 25-95 (100)
8 3phx_B Ubiquitin-like protein 99.8 9.7E-19 3.3E-23 115.0 9.1 72 8-87 3-74 (79)
9 1uel_A HHR23B, UV excision rep 99.8 2.2E-18 7.5E-23 118.0 10.2 74 10-91 1-78 (95)
10 2kk8_A Uncharacterized protein 99.8 7.4E-19 2.5E-23 118.5 7.7 75 8-90 9-84 (84)
11 3v6c_B Ubiquitin; structural g 99.8 1.8E-18 6.2E-23 117.1 9.3 75 6-88 14-88 (91)
12 1wju_A NEDD8 ultimate buster-1 99.8 1.7E-18 5.7E-23 121.4 9.2 78 8-92 14-94 (100)
13 2faz_A Ubiquitin-like containi 99.8 4.2E-18 1.4E-22 111.6 10.0 74 9-89 2-76 (78)
14 4fbj_B NEDD8; effector-HOST ta 99.8 2.1E-18 7.3E-23 116.5 8.5 71 10-88 1-71 (88)
15 2dzi_A Ubiquitin-like protein 99.8 3.8E-18 1.3E-22 112.0 9.3 77 6-90 4-80 (81)
16 2hj8_A Interferon-induced 17 k 99.8 2.3E-18 8E-23 116.2 8.1 75 8-90 3-77 (88)
17 1wgd_A Homocysteine-responsive 99.8 4.7E-18 1.6E-22 115.6 9.4 79 6-91 4-87 (93)
18 4eew_A Large proline-rich prot 99.8 3.3E-18 1.1E-22 114.7 8.4 72 6-86 14-85 (88)
19 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 7.6E-18 2.6E-22 112.4 9.7 78 6-91 4-81 (87)
20 3dbh_I NEDD8; cell cycle, acti 99.7 4E-18 1.4E-22 113.6 8.2 74 7-88 10-83 (88)
21 2bwf_A Ubiquitin-like protein 99.7 6.5E-18 2.2E-22 109.9 9.0 72 10-90 5-76 (77)
22 1yqb_A Ubiquilin 3; structural 99.7 5.1E-18 1.8E-22 117.7 9.0 79 4-91 17-95 (100)
23 1wy8_A NP95-like ring finger p 99.7 1.5E-17 5E-22 111.6 10.4 78 6-90 4-82 (89)
24 2kan_A Uncharacterized protein 99.7 8.3E-18 2.8E-22 115.5 9.3 75 7-90 13-88 (94)
25 3mtn_B UBA80, ubcep1, ubiquiti 99.7 9.2E-18 3.1E-22 110.8 8.9 74 8-89 2-75 (85)
26 2klc_A Ubiquilin-1; ubiquitin- 99.7 1.1E-17 3.9E-22 116.0 9.7 77 7-92 23-99 (101)
27 3n3k_B Ubiquitin; hydrolase, p 99.7 6.1E-18 2.1E-22 111.9 7.9 74 8-89 2-75 (85)
28 1wgg_A Ubiquitin carboxyl-term 99.7 7.4E-18 2.5E-22 116.2 8.4 76 6-91 4-80 (96)
29 1ttn_A DC-UBP, dendritic cell- 99.7 7.8E-18 2.7E-22 117.5 8.5 76 8-91 22-98 (106)
30 1v5o_A 1700011N24RIK protein; 99.7 1.2E-17 4.2E-22 115.8 9.1 77 7-90 5-85 (102)
31 1ndd_A NEDD8, protein (ubiquit 99.7 1.2E-17 4.2E-22 107.8 8.5 71 10-88 1-71 (76)
32 1wxv_A BAG-family molecular ch 99.7 1.1E-17 3.8E-22 113.4 8.5 79 7-94 5-89 (92)
33 1wx8_A Riken cDNA 4931431F19; 99.7 8E-18 2.7E-22 114.8 7.8 77 6-91 14-90 (96)
34 3a9j_A Ubiquitin; protein comp 99.7 2E-17 6.8E-22 106.7 9.1 72 10-89 1-72 (76)
35 4hcn_B Polyubiquitin, ubiquiti 99.7 9.8E-18 3.3E-22 115.3 7.9 74 7-88 20-93 (98)
36 1j8c_A Ubiquitin-like protein 99.7 2E-17 7E-22 119.2 9.6 79 3-90 26-104 (125)
37 1wia_A Hypothetical ubiquitin- 99.7 3E-17 1E-21 111.9 9.4 75 6-91 4-80 (95)
38 1v5t_A 8430435I17RIK protein; 99.7 1.2E-17 4.1E-22 113.5 7.0 77 7-92 5-85 (90)
39 1yx5_B Ubiquitin; proteasome, 99.7 4E-17 1.4E-21 111.8 9.7 81 10-98 1-82 (98)
40 1x1m_A Ubiquitin-like protein 99.7 4E-17 1.4E-21 114.2 9.9 79 7-93 10-103 (107)
41 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 3.2E-17 1.1E-21 111.3 9.1 71 10-88 2-72 (96)
42 1sif_A Ubiquitin; hydrophobic 99.7 2.4E-17 8.3E-22 111.3 8.1 73 9-89 9-81 (88)
43 2uyz_B Small ubiquitin-related 99.7 1.8E-17 6E-22 108.9 6.9 72 8-87 2-73 (79)
44 2daf_A FLJ35834 protein; hypot 99.7 3E-17 1E-21 118.0 8.4 84 7-98 13-98 (118)
45 3vdz_A Ubiquitin-40S ribosomal 99.7 5.1E-17 1.7E-21 114.5 9.0 73 8-88 34-106 (111)
46 1wx7_A Ubiquilin 3; ubiquitin- 99.7 5.9E-17 2E-21 112.8 9.2 75 6-89 14-88 (106)
47 1wyw_B Ubiquitin-like protein 99.7 4.1E-17 1.4E-21 112.2 7.3 73 7-87 19-91 (97)
48 1we6_A Splicing factor, putati 99.7 1.5E-16 5.1E-21 111.7 10.2 78 7-92 25-106 (111)
49 3m63_B Ubiquitin domain-contai 99.7 1.1E-17 3.9E-22 116.2 4.1 71 9-88 28-98 (101)
50 2kdb_A Homocysteine-responsive 99.7 4.1E-17 1.4E-21 113.6 6.7 71 8-85 22-97 (99)
51 1wgh_A Ubiquitin-like 3, HCG-1 99.7 4.6E-16 1.6E-20 111.4 12.0 83 6-94 13-103 (116)
52 2dzj_A Synaptic glycoprotein S 99.7 1.7E-16 5.9E-21 108.0 8.5 72 9-87 10-86 (88)
53 2l7r_A Ubiquitin-like protein 99.7 7.8E-17 2.7E-21 110.0 6.7 72 7-88 17-88 (93)
54 2ojr_A Ubiquitin; lanthide-bin 99.7 2.7E-16 9.4E-21 110.5 9.6 74 7-88 33-106 (111)
55 2gow_A HCG-1 protein, ubiquiti 99.7 6.4E-16 2.2E-20 111.9 11.6 80 7-92 15-102 (125)
56 3b1l_X E3 ubiquitin-protein li 99.5 4.1E-18 1.4E-22 110.9 0.0 71 10-88 1-71 (76)
57 1v86_A DNA segment, CHR 7, way 99.7 6.3E-17 2.1E-21 111.1 5.8 75 7-91 15-89 (95)
58 2kd0_A LRR repeats and ubiquit 99.7 2.6E-16 8.9E-21 105.9 7.5 74 8-90 11-84 (85)
59 2kdi_A Ubiquitin, vacuolar pro 99.7 6.2E-16 2.1E-20 109.5 9.7 75 8-90 8-82 (114)
60 3l0w_B Monoubiquitinated proli 99.7 3.7E-16 1.3E-20 117.7 8.9 71 10-88 1-71 (169)
61 4dbg_A Ranbp-type and C3HC4-ty 99.7 5.1E-16 1.7E-20 109.6 9.0 75 9-90 24-101 (105)
62 3u30_A Ubiquitin, linear DI-ub 99.6 6.7E-16 2.3E-20 115.1 10.0 74 7-88 18-91 (172)
63 1se9_A Ubiquitin family; ubiqu 99.6 1.4E-15 4.9E-20 110.4 11.2 68 7-82 14-89 (126)
64 1v2y_A 3300001G02RIK protein; 99.6 1.7E-16 5.8E-21 111.9 5.8 73 8-88 6-95 (105)
65 3rt3_B Ubiquitin-like protein 99.6 9.3E-16 3.2E-20 112.6 9.5 74 7-88 79-152 (159)
66 3rt3_B Ubiquitin-like protein 99.6 9.5E-16 3.3E-20 112.6 9.2 72 10-89 3-76 (159)
67 2fnj_B Transcription elongatio 99.6 3E-16 1E-20 112.9 5.5 72 10-88 1-80 (118)
68 1we7_A SF3A1 protein; structur 99.6 1.9E-15 6.5E-20 106.7 9.5 74 8-88 24-106 (115)
69 4ajy_B Transcription elongatio 99.6 6.6E-16 2.3E-20 111.1 6.5 72 10-88 1-80 (118)
70 3b08_A Polyubiquitin-C, ubiqui 99.6 2.1E-15 7.3E-20 108.7 9.3 73 10-90 1-73 (152)
71 3shq_A UBLCP1; phosphatase, hy 99.6 1.2E-15 4.2E-20 125.2 8.7 114 6-128 2-129 (320)
72 3q3f_A Ribonuclease/ubiquitin 99.6 1.7E-15 5.7E-20 116.5 8.3 72 9-88 105-176 (189)
73 4b6w_A Tubulin-specific chaper 99.6 5.9E-15 2E-19 100.2 10.0 75 9-90 2-85 (86)
74 1t0y_A Tubulin folding cofacto 99.6 4.6E-15 1.6E-19 106.1 9.8 78 8-92 5-90 (122)
75 3u5e_m 60S ribosomal protein L 99.6 7.8E-17 2.7E-21 116.0 0.3 71 10-88 1-71 (128)
76 2kjr_A CG11242; UBL, ubiquitin 99.6 4.5E-15 1.5E-19 102.5 8.1 74 6-86 12-92 (95)
77 2kj6_A Tubulin folding cofacto 99.6 6.6E-15 2.2E-19 102.2 8.3 75 7-88 12-95 (97)
78 3b08_A Polyubiquitin-C, ubiqui 99.6 1E-14 3.4E-19 105.2 9.5 74 8-89 75-148 (152)
79 1v6e_A Cytoskeleton-associated 99.6 1.1E-14 3.7E-19 99.7 8.9 74 8-88 6-86 (95)
80 3u5c_f 40S ribosomal protein S 99.5 3.8E-16 1.3E-20 116.4 0.0 70 10-87 1-71 (152)
81 3u30_A Ubiquitin, linear DI-ub 99.5 1.3E-14 4.4E-19 108.2 8.1 73 8-88 95-167 (172)
82 2dzm_A FAS-associated factor 1 99.5 2.1E-14 7.2E-19 100.3 8.6 71 10-89 9-81 (100)
83 1wf9_A NPL4 family protein; be 99.5 1.6E-14 5.6E-19 101.1 6.9 75 8-91 6-96 (107)
84 1oqy_A HHR23A, UV excision rep 99.5 1.4E-14 4.8E-19 121.0 7.6 78 7-90 5-84 (368)
85 3ai5_A Yeast enhanced green fl 99.5 5E-14 1.7E-18 115.3 8.8 73 7-87 231-303 (307)
86 2kzr_A Ubiquitin thioesterase 99.5 2.6E-14 9E-19 96.0 5.6 75 10-93 1-81 (86)
87 2xzm_9 RPS31E; ribosome, trans 99.4 4.4E-14 1.5E-18 108.8 0.0 66 10-88 1-67 (189)
88 2io1_B Small ubiquitin-related 99.4 2.7E-12 9.4E-17 88.3 8.3 74 6-87 4-78 (94)
89 1wjn_A Tubulin-folding protein 99.3 2.3E-11 8E-16 83.1 10.9 76 7-89 7-92 (97)
90 2io0_B Small ubiquitin-related 99.3 1.1E-11 3.7E-16 84.9 8.9 74 7-88 3-77 (91)
91 3a4r_A Nfatc2-interacting prot 99.3 1.9E-11 6.4E-16 81.3 8.6 75 6-87 4-78 (79)
92 1wm3_A Ubiquitin-like protein 99.3 1.3E-11 4.4E-16 80.5 7.6 69 10-86 2-70 (72)
93 2d07_B Ubiquitin-like protein 99.2 4.3E-11 1.5E-15 82.0 8.4 72 7-86 15-86 (93)
94 1wz0_A Ubiquitin-like protein 99.2 5.7E-11 1.9E-15 83.2 7.1 73 7-87 22-94 (104)
95 2k8h_A Small ubiquitin protein 99.2 5E-11 1.7E-15 84.4 6.1 74 7-88 24-98 (110)
96 2eke_C Ubiquitin-like protein 99.1 2.4E-10 8.2E-15 80.4 8.4 71 7-86 29-99 (106)
97 3kyd_D Small ubiquitin-related 98.9 8E-09 2.7E-13 73.7 8.7 73 7-87 38-111 (115)
98 2pjh_A Protein NPL4, nuclear p 98.7 8E-09 2.7E-13 68.9 2.6 73 8-87 3-78 (80)
99 3pge_A SUMO-modified prolifera 98.6 1.8E-07 6.1E-12 72.4 8.1 74 7-89 27-101 (200)
100 3tix_A Ubiquitin-like protein 98.5 2.9E-07 1E-11 71.2 6.6 73 7-88 55-127 (207)
101 4efo_A Serine/threonine-protei 98.5 2.5E-07 8.6E-12 63.8 5.5 52 10-63 13-64 (94)
102 3goe_A DNA repair protein RAD6 98.4 1.6E-06 5.6E-11 58.1 8.8 71 8-86 8-80 (82)
103 2jxx_A Nfatc2-interacting prot 98.4 1.8E-06 6.3E-11 59.6 8.7 74 6-86 22-95 (97)
104 3v7o_A Minor nucleoprotein VP3 98.2 2E-07 6.8E-12 73.0 0.0 72 7-87 19-91 (227)
105 3uf8_A Ubiquitin-like protein 98.0 1.7E-05 5.6E-10 61.1 7.2 72 7-87 19-91 (209)
106 2l76_A Nfatc2-interacting prot 97.8 8.1E-05 2.8E-09 51.3 7.9 72 7-87 19-91 (95)
107 3ix6_A TS, tsase, thymidylate 97.8 2.7E-06 9.3E-11 70.9 0.0 72 7-87 19-91 (360)
108 4da1_A Protein phosphatase 1K, 97.6 7.6E-06 2.6E-10 67.6 0.0 72 7-87 28-100 (389)
109 2bps_A YUKD protein; ubiquitin 97.2 0.00045 1.5E-08 46.2 4.8 69 9-85 4-79 (81)
110 2al3_A TUG long isoform; TUG U 97.2 0.00093 3.2E-08 45.6 6.1 78 8-93 8-86 (90)
111 3qx1_A FAS-associated factor 1 97.2 0.0043 1.5E-07 40.7 9.2 76 6-87 4-81 (84)
112 2kc2_A Talin-1, F1; FERM, adhe 97.1 0.0005 1.7E-08 49.6 4.5 70 11-88 13-121 (128)
113 2dzk_A UBX domain-containing p 96.7 0.023 7.7E-07 39.3 9.8 83 7-94 11-95 (109)
114 1wj4_A KIAA0794 protein; UBX d 96.1 0.026 9.1E-07 39.9 7.6 75 7-87 41-117 (124)
115 4e71_A Plexin-B2, MM1; transme 95.7 0.11 3.9E-06 36.4 9.5 81 7-87 9-109 (111)
116 2cr5_A Reproduction 8; UBX dom 95.5 0.055 1.9E-06 37.2 7.2 75 7-88 21-97 (109)
117 3rpf_C Molybdopterin convertin 95.4 0.12 4.2E-06 32.7 8.2 65 10-86 1-68 (74)
118 2l32_A Small archaeal modifier 95.2 0.066 2.3E-06 34.5 6.4 60 10-87 1-61 (74)
119 2r2o_A Plexin-B1; effector dom 94.9 0.17 5.6E-06 36.8 8.2 82 7-88 22-128 (138)
120 4e74_A Plexin-A4; RBD, structu 94.3 0.34 1.1E-05 34.2 8.5 81 7-87 11-113 (117)
121 1ryj_A Unknown; beta/alpha pro 94.2 0.34 1.1E-05 30.4 7.7 60 9-86 4-64 (70)
122 1s3s_G P47 protein; AAA ATPase 93.7 0.22 7.4E-06 35.2 6.7 69 7-82 50-121 (127)
123 3ivf_A Talin-1; FERM domain, c 93.7 0.17 5.9E-06 40.9 6.9 83 9-100 3-95 (371)
124 3h6n_A Plexin-D1; structural g 93.2 1.3 4.4E-05 31.7 10.0 79 9-87 4-103 (127)
125 1oey_A P67-PHOX, neutrophil cy 92.6 0.36 1.2E-05 32.1 6.0 47 9-60 5-51 (83)
126 3kuz_A Plexin-C1; structural g 92.5 1.1 3.7E-05 32.0 8.9 80 8-87 18-125 (126)
127 1vjk_A Molybdopterin convertin 92.5 0.83 2.8E-05 30.2 7.9 67 8-86 8-91 (98)
128 4a3p_A Ubiquitin carboxyl-term 92.2 0.66 2.2E-05 35.3 8.0 62 23-90 142-209 (217)
129 1tyg_B YJBS; alpha beta barrel 92.1 0.23 7.7E-06 33.1 4.6 63 6-86 17-81 (87)
130 2c7h_A RBBP6, retinoblastoma-b 91.8 0.69 2.4E-05 31.0 6.7 78 8-93 5-84 (86)
131 1wgk_A Riken cDNA 2900073H19 p 91.1 2.7 9.1E-05 29.0 9.5 35 8-42 10-54 (114)
132 3jyu_A Ubiquitin carboxyl-term 90.9 1.2 4.2E-05 34.1 8.3 61 24-90 155-221 (231)
133 2kvr_A Ubiquitin carboxyl-term 90.9 0.15 5.2E-06 36.3 2.9 35 23-59 58-92 (130)
134 2qjl_A URM1, ubiquitin-related 90.6 1.3 4.6E-05 29.3 7.3 34 9-42 1-43 (99)
135 1vd2_A Protein kinase C, IOTA 88.8 2.1 7.3E-05 28.6 7.1 52 4-59 1-53 (89)
136 4eut_A Serine/threonine-protei 88.8 1.9 6.4E-05 34.3 8.1 49 12-62 313-361 (396)
137 3ig3_A Plxna3 protein; plexin 86.8 5.3 0.00018 35.4 10.2 80 8-87 232-333 (627)
138 2daj_A KIAA0977 protein, COBL- 85.3 1.8 6.1E-05 29.1 5.1 76 7-90 8-83 (91)
139 3hm6_X Plexin-B1; structural g 84.6 5.1 0.00017 35.6 9.0 80 8-87 256-360 (644)
140 1fm0_D Molybdopterin convertin 84.6 3.1 0.00011 25.9 5.9 51 23-86 19-74 (81)
141 3po0_A Small archaeal modifier 84.5 4.9 0.00017 25.6 7.0 52 23-86 20-82 (89)
142 2hj1_A Hypothetical protein; s 83.3 4.9 0.00017 27.0 6.8 70 8-87 11-84 (97)
143 2ylm_A Ubiquitin carboxyl-term 81.7 0.92 3.2E-05 39.0 3.2 34 23-58 38-71 (530)
144 2q5w_D Molybdopterin convertin 80.0 2 6.8E-05 26.7 3.7 51 23-86 18-71 (77)
145 2kmm_A Guanosine-3',5'-BIS(dip 79.7 4.9 0.00017 24.4 5.4 61 10-87 1-62 (73)
146 2k9x_A Tburm1, uncharacterized 79.2 1.2 4.1E-05 30.7 2.6 75 9-87 4-96 (110)
147 1wgy_A RAP guanine nucleotide 79.0 8.5 0.00029 26.4 6.8 76 6-89 6-86 (104)
148 2k5p_A THis protein, thiamine- 78.5 0.87 3E-05 29.4 1.5 52 24-87 9-64 (78)
149 1wgr_A Growth factor receptor- 76.3 10 0.00035 25.7 6.6 59 6-67 6-71 (100)
150 2kl0_A Putative thiamin biosyn 75.5 2.5 8.7E-05 26.7 3.1 51 24-87 9-60 (73)
151 1rws_A Hypothetical protein PF 73.7 1.8 6.2E-05 27.4 2.1 45 24-84 24-68 (77)
152 3onh_A Ubiquitin-activating en 73.3 7 0.00024 27.8 5.3 63 24-89 9-79 (127)
153 1f0z_A THis protein; ubiquitin 73.0 4.4 0.00015 24.6 3.7 51 24-86 9-60 (66)
154 2l52_A Methanosarcina acetivor 72.9 5 0.00017 26.5 4.3 70 8-86 2-92 (99)
155 3dwg_C 9.5 kDa culture filtrat 71.6 17 0.00058 23.2 6.9 54 24-86 20-86 (93)
156 2cu3_A Unknown function protei 71.4 8 0.00027 23.3 4.7 50 24-86 8-58 (64)
157 3qa8_A MGC80376 protein; kinas 70.6 6.5 0.00022 34.8 5.6 40 23-64 324-363 (676)
158 1ip9_A BEM1 protein; ubiquitin 69.8 21 0.00072 23.6 6.7 47 8-60 11-58 (85)
159 3hvz_A Uncharacterized protein 66.0 14 0.00047 23.7 5.1 60 11-87 7-67 (78)
160 2dhz_A RAP guanine nucleotide 64.6 16 0.00056 25.6 5.6 78 4-89 4-92 (120)
161 2juo_A GA-binding protein alph 64.2 22 0.00074 23.7 5.8 62 25-93 7-70 (89)
162 2lkz_A RNA-binding protein 5; 63.4 9.6 0.00033 24.7 4.1 45 1-57 1-45 (95)
163 2g1e_A Hypothetical protein TA 59.9 29 0.00098 21.7 6.5 55 24-86 18-83 (90)
164 3ge3_C Toluene-4-monooxygenase 59.5 35 0.0012 22.5 9.2 71 9-86 3-81 (84)
165 1hji_B NUN-protein; bacterioph 59.1 4.3 0.00015 20.8 1.3 14 117-130 12-25 (26)
166 2c5l_C Phosphoinositide-specif 53.7 45 0.0015 23.2 6.3 43 5-49 3-46 (117)
167 2v1y_A Phosphatidylinositol-4, 51.1 27 0.00093 23.9 4.8 34 8-42 18-51 (108)
168 2bt6_A Adrenodoxin 1; rutheniu 46.7 25 0.00084 23.0 4.0 30 6-36 3-32 (108)
169 1q1o_A Cell division control p 46.6 18 0.00061 24.5 3.2 40 8-49 4-49 (98)
170 3r8s_T 50S ribosomal protein L 42.4 51 0.0017 21.8 5.0 39 23-63 30-69 (93)
171 3ivf_A Talin-1; FERM domain, c 42.4 1.2E+02 0.0043 23.8 9.2 48 8-58 84-132 (371)
172 4gdk_A Ubiquitin-like protein 42.1 60 0.0021 21.2 5.3 52 7-60 3-57 (91)
173 1pqs_A Cell division control p 41.6 16 0.00055 23.5 2.3 25 23-49 4-28 (77)
174 3hui_A Ferredoxin; cytochrome 37.5 52 0.0018 22.6 4.6 31 5-36 17-47 (126)
175 2aff_B MKI67 FHA domain intera 37.4 9.1 0.00031 22.4 0.5 14 103-116 29-43 (44)
176 3qij_A Protein 4.1; cytoskelet 34.9 35 0.0012 26.4 3.7 48 8-58 16-64 (296)
177 2eel_A Cell death activator CI 34.5 1E+02 0.0034 20.4 6.7 52 10-66 10-63 (91)
178 1v8c_A MOAD related protein; r 32.6 1.1E+02 0.0036 22.1 5.8 54 24-86 17-80 (168)
179 3tve_T 50S ribosomal protein L 32.5 71 0.0024 21.0 4.4 38 23-62 24-62 (92)
180 1ef1_A Moesin; membrane, FERM 32.0 49 0.0017 25.1 4.1 45 9-57 1-46 (294)
181 2eki_A DRG 1, developmentally- 31.6 1.1E+02 0.0039 20.2 7.0 66 8-88 10-87 (93)
182 4gmv_A RAS-associated and plec 30.7 1.2E+02 0.004 23.8 6.1 41 9-52 31-71 (281)
183 3au4_A Myosin-X; protein-prote 30.7 79 0.0027 26.5 5.5 48 8-58 215-264 (555)
184 1wmh_B Partitioning defective- 30.3 99 0.0034 20.2 4.8 48 8-59 5-54 (86)
185 1y8x_B Ubiquitin-activating en 29.5 69 0.0023 21.3 4.0 62 23-87 7-82 (98)
186 2y5c_A Adrenodoxin-like protei 29.4 72 0.0024 20.7 4.1 28 8-36 4-31 (109)
187 1h4r_A Merlin; FERM, neurofibr 27.7 67 0.0023 24.7 4.2 68 8-84 21-93 (314)
188 3hk0_A Growth factor receptor- 27.6 1.2E+02 0.0042 23.3 5.7 45 10-57 9-53 (256)
189 1jq4_A Methane monooxygenase c 26.1 89 0.003 19.8 4.0 29 8-37 3-31 (98)
190 1y8q_B Anthracycline-, ubiquit 25.6 1.1E+02 0.0037 26.9 5.6 90 23-115 450-548 (640)
191 1f2r_I Inhibitor of caspase-ac 25.1 1.5E+02 0.0051 19.9 5.1 49 31-88 37-89 (100)
192 2i1s_A Hypothetical protein; m 24.7 81 0.0028 22.9 4.0 43 8-52 7-51 (188)
193 2bb6_A TCII, TC II, transcobal 24.4 3E+02 0.01 22.8 8.2 34 9-42 318-351 (414)
194 4gdk_C APG16-like 1, autophagy 24.3 22 0.00075 19.8 0.6 15 117-131 3-17 (36)
195 2nvu_B Maltose binding protein 24.2 1.9E+02 0.0066 25.3 7.0 60 23-87 714-789 (805)
196 2i1j_A Moesin; FERM, coiled-co 23.7 3.1E+02 0.011 23.4 8.1 68 8-84 3-76 (575)
197 1j0g_A Hypothetical protein 18 23.6 1.6E+02 0.0055 19.3 7.0 64 16-86 18-84 (92)
198 2zjr_Q 50S ribosomal protein L 23.4 58 0.002 21.6 2.7 38 23-62 25-63 (95)
199 3pvl_A Myosin VIIA isoform 1; 23.2 1.2E+02 0.0041 26.5 5.3 47 8-57 262-309 (655)
200 1zps_A PRA-CH, phosphoribosyl- 22.2 63 0.0022 23.1 2.8 67 31-102 42-109 (138)
201 3tca_A Amyloid beta A4 precurs 22.2 1.5E+02 0.005 22.0 5.2 40 10-52 35-74 (291)
202 2ylm_A Ubiquitin carboxyl-term 21.2 1.7E+02 0.0057 24.8 5.8 45 10-56 240-286 (530)
203 2inc_C TOUB protein; DIIRON, 4 20.6 1.9E+02 0.0063 18.9 10.1 66 12-84 4-77 (83)
No 1
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.81 E-value=7.3e-20 Score=126.86 Aligned_cols=72 Identities=17% Similarity=0.137 Sum_probs=67.0
Q ss_pred CCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032742 5 EISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (135)
Q Consensus 5 ~~~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI 84 (135)
+...+|+|+||+..|+. +.+++++++||++||++|++ +.|+|+++|||+|.|+.|+|+.+ |++|+|++|++|
T Consensus 17 ~~~~mIqI~Vk~~~Gkk-~~v~v~p~DTI~~LK~~I~~--k~Gip~~qQrLif~Gk~LkD~~T-----L~dY~I~dgstL 88 (93)
T 3plu_A 17 RGSHMIEVVVNDRLGKK-VRVKCLGEDSVGDFKKVLSL--QIGTQPNKIVLQKGGSVLKDHIS-----LEDYEVHDQTNL 88 (93)
T ss_dssp ---CEEEEEEECTTSCE-EEEEEETTSBHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTSB-----TGGGTCCTTCEE
T ss_pred CCCceEEEEEECCCCCE-EEEEECCcCHHHHHHHHHHH--HhCCCHHHEEEEeCCEEccCcCC-----HHHcCCCCCCEE
Confidence 34689999999999977 89999999999999999999 99999999999999999999999 999999999999
No 2
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.80 E-value=4.1e-19 Score=123.71 Aligned_cols=75 Identities=19% Similarity=0.332 Sum_probs=66.0
Q ss_pred CCceEEEEEeCCCCCcEEE--EecCCCcHHHHHHHH-HhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCC-CCCC
Q 032742 7 SESVEITVKTIGPAPPSRL--SVSSPIKVRDLRKLI-ATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQL-SNGD 82 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i--~v~~~~TV~dLK~~I-a~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I-~dG~ 82 (135)
.++|+|+||+.+|.. +.+ ++++++||++||++| ++ ..|+|+++|||||+|+.|+|+.+ |++|+| ++|+
T Consensus 17 ~~~m~I~VKtl~g~~-~~i~v~v~~~~TV~~lK~~I~~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~dy~I~~~g~ 88 (98)
T 4a20_A 17 NAAVHLTLKKIQAPK-FSIEHDFSPSDTILQIKQHLISE--EKASHISEIKLLLKGKVLHDNLF-----LSDLKVTPANS 88 (98)
T ss_dssp -CCEEEEEEECSSSC-EEEEEEECTTCBHHHHHHHHHHT--TSCSCGGGEEEEETTEEECTTCB-----GGGSCCBTTBC
T ss_pred CCCEEEEEEcCCCCE-EEEEEecCCCChHHHHHHHHHHH--hcCCChhhEEEEECCEECcCcCC-----HHHcCcCCCCC
Confidence 467999999999875 665 666999999999999 77 88999999999999999999988 999999 9999
Q ss_pred EEEEEec
Q 032742 83 SVIAAVK 89 (135)
Q Consensus 83 tIlv~~~ 89 (135)
+|++++.
T Consensus 89 ti~lmvs 95 (98)
T 4a20_A 89 TITVMIK 95 (98)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 9955443
No 3
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.4e-19 Score=123.56 Aligned_cols=76 Identities=18% Similarity=0.322 Sum_probs=68.8
Q ss_pred ceEEEEEeCCCCCcEEEEec--CCCcHHHHHHHH-HhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCC-CCCCEE
Q 032742 9 SVEITVKTIGPAPPSRLSVS--SPIKVRDLRKLI-ATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQL-SNGDSV 84 (135)
Q Consensus 9 ~m~I~VKt~~~~~~~~i~v~--~~~TV~dLK~~I-a~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I-~dG~tI 84 (135)
||+|+||+.++.. +.++++ +++||++||++| ++ ..|+|+++|||||+|+.|+|+.+ |++|+| .+|++|
T Consensus 1 mmqI~VKtl~g~~-~~i~v~v~~~~TV~~lK~~I~~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~y~I~~~~stl 72 (87)
T 2lxa_A 1 MVHLTLKKIQAPK-FSIEHDFSPSDTILQIKQHLISE--EKASHISEIKLLLKGKVLHDNLF-----LSDLKVTPANSTI 72 (87)
T ss_dssp CCEEEEEECSSSC-EECCEECCTTCBHHHHHHHHHHT--TSCSSSTTEEEEETTEECCTTCB-----HHHHCCCGGGCEE
T ss_pred CEEEEEEcCCCCE-EEEEEcCCCCCcHHHHHHHHHHH--hcCCChHHEEEEECCEECcCcCC-----HHHcCCCCCCCEE
Confidence 6999999999976 777655 999999999999 88 88999999999999999999998 999999 699999
Q ss_pred EEEecCCC
Q 032742 85 IAAVKPKP 92 (135)
Q Consensus 85 lv~~~p~~ 92 (135)
.|...|.-
T Consensus 73 ~v~~~~~~ 80 (87)
T 2lxa_A 73 TVMIKPNL 80 (87)
T ss_dssp EEEECCCC
T ss_pred EEEcCCCc
Confidence 88887753
No 4
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.80 E-value=3.6e-19 Score=118.24 Aligned_cols=76 Identities=21% Similarity=0.371 Sum_probs=67.4
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccC---CCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSA---NHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~---~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI 84 (135)
.+|+|+||+.++.. +.+++++++||++||++|++ . +|+|+++|||+|+|+.|+|+.+ |++|+|++|++|
T Consensus 4 ~~m~i~vk~~~g~~-~~~~v~~~~TV~~lK~~i~~--~~~~~gip~~~qrLi~~Gk~L~D~~t-----L~~~~i~~g~~i 75 (85)
T 2wyq_A 4 MAVTITLKTLQQQT-FKIRMEPDETVKVLKEKIEA--EKGRDAFPVAGQKLIYAGKILSDDVP-----IRDYRIDEKNFV 75 (85)
T ss_dssp CCEEEEEEETTSCE-EEEEECTTSBHHHHHHHHHH--HHCTTTCCGGGEEEEETTEECCTTSB-----GGGGCCCTTSEE
T ss_pred ceEEEEEEECCCCE-EEEEECCCCCHHHHHHHHHh--hccccCCCHHHeEEEECCEECcCCCC-----HHHcCCCCCCEE
Confidence 57999999998865 88999999999999999998 7 8999999999999999999888 999999999999
Q ss_pred EEEecCC
Q 032742 85 IAAVKPK 91 (135)
Q Consensus 85 lv~~~p~ 91 (135)
++...++
T Consensus 76 ~l~~~~~ 82 (85)
T 2wyq_A 76 VVMVTKT 82 (85)
T ss_dssp EEEEC--
T ss_pred EEEEcCC
Confidence 5544433
No 5
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.5e-19 Score=126.51 Aligned_cols=75 Identities=21% Similarity=0.331 Sum_probs=66.0
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032742 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (135)
Q Consensus 9 ~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv~ 87 (135)
||+|+||+.+|+. +.++|++++||.+||++|++ .+|+|+++|||+|+|+.|+|+.+ |++|+|++|++| ++.
T Consensus 1 mm~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~~~i~~g~~i~lv~ 72 (106)
T 3m62_B 1 MVSLTFKNFKKEK-VPLDLEPSNTILETKTKLAQ--SISCEESQIKLIYSGKVLQDSKT-----VSECGLKDGDQVVFMV 72 (106)
T ss_dssp --CEEEECTTCCE-EEECCCTTSBHHHHHHHHHH--TTTSCGGGCEEEETTEECCTTSB-----TTTTTCCTTCEEEEEC
T ss_pred CEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCCChhhEEEEECCEECCCcCC-----HHHcCCCCCCEEEEEE
Confidence 5899999998866 88999999999999999999 99999999999999999999888 999999999999 555
Q ss_pred ecCC
Q 032742 88 VKPK 91 (135)
Q Consensus 88 ~~p~ 91 (135)
..|+
T Consensus 73 ~~~~ 76 (106)
T 3m62_B 73 SQKK 76 (106)
T ss_dssp CC--
T ss_pred cCCC
Confidence 5444
No 6
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.79 E-value=4.5e-19 Score=119.40 Aligned_cols=76 Identities=24% Similarity=0.458 Sum_probs=68.3
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032742 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (135)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIl 85 (135)
+..+|+|+||+.++.. +.++|++++||.+||++|++ .+++|+++|||+|+|+.|+|+.+ |.+|+| +|++|+
T Consensus 2 ~~~~m~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~gip~~~qrLi~~Gk~L~d~~t-----L~~~~i-~g~~i~ 72 (90)
T 4dwf_A 2 EPDSLEVLVKTLDSQT-RTFIVGAQMNVKEFKEHIAA--SVSIPSEKQRLIYQGRVLQDDKK-----LQEYNV-GGKVIH 72 (90)
T ss_dssp CCCEEEEEEEETTCCE-EEEEEETTCBHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTSB-----GGGGTC-TTEEEE
T ss_pred CCcEEEEEEEcCCCCE-EEEEECCCCCHHHHHHHHHH--HhCCCHHHEEEEECCeECCCCCC-----HHHcCC-CCcEEE
Confidence 4578999999998866 88999999999999999999 99999999999999999999888 999999 899994
Q ss_pred EEecC
Q 032742 86 AAVKP 90 (135)
Q Consensus 86 v~~~p 90 (135)
+...+
T Consensus 73 l~~~~ 77 (90)
T 4dwf_A 73 LVERA 77 (90)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 44433
No 7
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.78 E-value=2.6e-19 Score=125.55 Aligned_cols=71 Identities=15% Similarity=0.161 Sum_probs=66.9
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032742 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (135)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI 84 (135)
...||+|+||+..|+. +.++|++++||++||++|++ +.|+|+++|||||.|+.|+|+.+ |++|+|++|++|
T Consensus 25 ~~~mm~I~VKtl~Gk~-i~lev~p~dTV~~lK~~Ia~--k~Gip~~qQrLi~~Gk~L~D~~T-----L~dygI~~gstl 95 (100)
T 1uh6_A 25 AATMIEVVCNDRLGKK-VRVKCNTDDTIGDLKKLIAA--QTGTRWNKIVLKKWYTIFKDHVS-----LGDYEIHDGMNL 95 (100)
T ss_dssp CCCEEEEEEECSSSSC-EEEEEETTSBHHHHHHHHHH--HHCCCGGGCEEEETTEECCSSCB-----HHHHTCCTTEEE
T ss_pred CCCeEEEEEECCCCCE-EEEEeCCCCcHHHHHHHHHH--HhCCCHHHEEEEECCEECCCCCC-----HHHcCCCCCCEE
Confidence 3567999999998865 89999999999999999999 99999999999999999999988 999999999999
No 8
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.78 E-value=9.7e-19 Score=115.03 Aligned_cols=72 Identities=21% Similarity=0.196 Sum_probs=67.1
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (135)
..|+|+||+.+|+. +.+++++++||++||++|++ .+|+|+++|||+|+|+.|+|+.+ |++|+|++|++|.+.
T Consensus 3 ~~m~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~gip~~~qrL~~~G~~L~d~~t-----L~~~~i~~~~~l~l~ 74 (79)
T 3phx_B 3 EPLSILVRNNKGRS-STYEVRLTQTVAHLKQQVSG--LEGVQDDLFWLTFEGKPLEDQLP-----LGEYGLKPLSTVFMN 74 (79)
T ss_dssp CCEEEEEECTTSCE-EEEEECTTSBHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTSB-----GGGGTCCTTCEEEEE
T ss_pred CCEEEEEEeCCCCE-EEEEECCcChHHHHHHHHHh--hcCCCHHHEEEEECCEECCCCCc-----HHHCCCCCCCEEEEE
Confidence 57999999998865 88999999999999999999 99999999999999999999888 999999999999443
No 9
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=2.2e-18 Score=117.96 Aligned_cols=74 Identities=22% Similarity=0.479 Sum_probs=66.4
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccC---CCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSA---NHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~---~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
|+|+||+..+.. +.++|++++||++||++|++ . +|+|+++|||+|+|+.|+|+.+ |++|+|++|++|++
T Consensus 1 M~I~Vk~~~g~~-~~~~v~~~~TV~~LK~~I~~--~~~~~gip~~~qrLi~~Gk~L~D~~t-----L~~ygI~~g~~i~l 72 (95)
T 1uel_A 1 MQVTLKTLQQQT-FKIDIDPEETVKALKEKIES--EKGKDAFPVAGQKLIYAGKILNDDTA-----LKEYKIDEKNFVVV 72 (95)
T ss_dssp CEEEEEETTCCE-EEEECCTTSBHHHHHHHHHH--HHCTTTCCTTTEEEEETTEECCTTSB-----GGGGTCCSSSEEEE
T ss_pred CEEEEEeCCCCE-EEEEECCCCHHHHHHHHHHh--hcccCCCChhhEEEEECCEECCCcCc-----HHHCCCCCCCEEEE
Confidence 789999998865 88999999999999999998 7 8999999999999999999888 99999999999944
Q ss_pred -EecCC
Q 032742 87 -AVKPK 91 (135)
Q Consensus 87 -~~~p~ 91 (135)
...|+
T Consensus 73 ~~~~~~ 78 (95)
T 1uel_A 73 MVTKPK 78 (95)
T ss_dssp EESSCC
T ss_pred EEeCCC
Confidence 44443
No 10
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.77 E-value=7.4e-19 Score=118.50 Aligned_cols=75 Identities=16% Similarity=0.241 Sum_probs=69.2
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCee-cCCCCCCCCCCccccCCCCCCEEEE
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKV-LDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~-L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
.-|+|+||+..|+. +.+++++++||++||++|++ .+|+|+++|||+|+|+. |+|+.+ |++|+|++|++|.+
T Consensus 9 ~~~~i~vk~l~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~lL~D~~t-----L~~y~I~~gs~i~l 80 (84)
T 2kk8_A 9 SHMKFLVENLNGSS-FELEVDYRDTLLVVKQKIER--SQHIPVSKQTLIVDGIVILREDLT-----VEQCQIVPTSDIQL 80 (84)
T ss_dssp CCEEEEEEETTSCE-EEEEECTTSBHHHHHHHHHH--HHTCCGGGEEEEETTEECCCSSSB-----HHHHTCCTTSCEEE
T ss_pred CceEEEEEecCCcE-EEEEECCCChHHHHHHHHHH--HHCcChHHEEEEECCEEecCCcCC-----HHHcCCCCCCEEEE
Confidence 56999999999966 88999999999999999999 99999999999999999 998888 99999999999966
Q ss_pred EecC
Q 032742 87 AVKP 90 (135)
Q Consensus 87 ~~~p 90 (135)
...|
T Consensus 81 v~~p 84 (84)
T 2kk8_A 81 EVSS 84 (84)
T ss_dssp EECC
T ss_pred EEcC
Confidence 6554
No 11
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.77 E-value=1.8e-18 Score=117.11 Aligned_cols=75 Identities=20% Similarity=0.311 Sum_probs=68.8
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032742 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (135)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIl 85 (135)
....|+|+||+.+|.. +.+++++++||++||++|++ .+|+|+++|||+|+|+.|.|+.+ |.+|+|++|++|+
T Consensus 14 ~~~~m~i~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrL~~~Gk~L~D~~t-----L~~~gi~~g~~i~ 85 (91)
T 3v6c_B 14 PRGSMQIFVNTLTGTH-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLH 85 (91)
T ss_dssp CCCSEEEEEECTTSCE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGCEEEETTEECCTTCB-----TGGGTCCTTCEEE
T ss_pred CCCeEEEEEEeCCCCE-EEEEECCCCCHHHHHHHHHh--hhCCChhhEEEEECCeECCCcCc-----HHHCCCCCCCEEE
Confidence 4568999999998865 88999999999999999999 99999999999999999999888 9999999999995
Q ss_pred EEe
Q 032742 86 AAV 88 (135)
Q Consensus 86 v~~ 88 (135)
+..
T Consensus 86 l~~ 88 (91)
T 3v6c_B 86 LVL 88 (91)
T ss_dssp EEC
T ss_pred EEE
Confidence 543
No 12
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.7e-18 Score=121.41 Aligned_cols=78 Identities=17% Similarity=0.066 Sum_probs=67.3
Q ss_pred CceEEEEEeCCC---CCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032742 8 ESVEITVKTIGP---APPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (135)
Q Consensus 8 ~~m~I~VKt~~~---~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI 84 (135)
.+.+|.|+..+. ...+.++|++++||++||++|++ +.|+|+++|||||+||+|+|+.+ |++|+|++|++|
T Consensus 14 g~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~--k~gip~~qQrLI~~GKiL~D~~T-----L~~y~I~~gsti 86 (100)
T 1wju_A 14 GIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAE--TFGLQENYIKIVINKKQLQLGKT-----LEEQGVAHNVKA 86 (100)
T ss_dssp CEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHH--HTTCCSTTCEEEETTEECCTTSB-----HHHHTCCSSEEE
T ss_pred ceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHH--HHCcCHHHeEEEeCCeECCCCCc-----HHHcCCCCCCEE
Confidence 457788887762 23489999999999999999999 99999999999999999999999 999999999999
Q ss_pred EEEecCCC
Q 032742 85 IAAVKPKP 92 (135)
Q Consensus 85 lv~~~p~~ 92 (135)
+|+....+
T Consensus 87 ~vl~lrg~ 94 (100)
T 1wju_A 87 MVLELKQS 94 (100)
T ss_dssp EEECCCCC
T ss_pred EEEEECCC
Confidence 66654443
No 13
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=4.2e-18 Score=111.56 Aligned_cols=74 Identities=26% Similarity=0.340 Sum_probs=66.9
Q ss_pred ceEEEEEeCCCCCcEEEE-ecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032742 9 SVEITVKTIGPAPPSRLS-VSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (135)
Q Consensus 9 ~m~I~VKt~~~~~~~~i~-v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (135)
.|+|+||+..|+..+.++ +++++||++||++|++ .+|+|+++|||+|+|+.|.|+.+ |++|+|++|++|++.
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~--~~gip~~~qrL~~~g~~L~d~~t-----L~~~~i~~g~~i~l~ 74 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQE--LFHVEPGLQRLFYRGKQMEDGHT-----LFDYEVRLNDTIQLL 74 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTCB-----TTTTTCCTTCEEEEE
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHH--HHCcChhhEEEEECCEECCCCCC-----HHHcCCCCCCEEEEE
Confidence 699999999886523798 9999999999999999 99999999999999999999888 999999999999555
Q ss_pred ec
Q 032742 88 VK 89 (135)
Q Consensus 88 ~~ 89 (135)
..
T Consensus 75 ~r 76 (78)
T 2faz_A 75 VR 76 (78)
T ss_dssp EC
T ss_pred Ee
Confidence 44
No 14
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.76 E-value=2.1e-18 Score=116.54 Aligned_cols=71 Identities=18% Similarity=0.363 Sum_probs=65.9
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (135)
|+|+||+.+++. +.+++++++||++||++|++ .+++|+++|||+|+|+.|+|+.+ |++|+|++|++|++..
T Consensus 1 M~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~~~i~~g~~l~l~~ 71 (88)
T 4fbj_B 1 MLIKVKTLTGKE-IEIDIEPTDKVERIKERVEE--KEGIPPQQQRLIYSGKQMNDEKT-----AADYKILGGSVLHLVL 71 (88)
T ss_dssp CEEEEEETTCCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGCEEEETTEECCTTSB-----TTTTTCCTTCEEEEEC
T ss_pred CEEEEEcCCCCE-EEEEECCCCCHHHHHHHHHH--HHCcChhHEEEEECCeECCCCCc-----HHHcCCCCCCEEEEEE
Confidence 789999998866 88999999999999999999 99999999999999999999888 9999999999994444
No 15
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.8e-18 Score=111.96 Aligned_cols=77 Identities=26% Similarity=0.397 Sum_probs=69.3
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032742 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (135)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIl 85 (135)
...+|+|+||+.++.. +.+++++++||++||++|++ .+++|+++|||+|+|+.|.|+.+ |++|+|++|++|+
T Consensus 4 ~~~~m~i~vk~~~g~~-~~~~v~~~~tV~~LK~~i~~--~~~i~~~~qrL~~~gk~L~d~~t-----L~~~~i~~g~~i~ 75 (81)
T 2dzi_A 4 GSSGMQLTVKALQGRE-CSLQVPEDELVSTLKQLVSE--KLNVPVRQQRLLFKGKALADGKR-----LSDYSIGPNSKLN 75 (81)
T ss_dssp SSSSEEEEEEETTSCE-EEEEECSSCBHHHHHHHHHH--HTCCCTTTCEEEETTEECCTTSB-----GGGGTCCSSBCCE
T ss_pred CCCcEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCcCHHHEEEEECCeECCCCCc-----HHHcCCCCCCEEE
Confidence 3468999999988854 88999999999999999999 99999999999999999998888 9999999999996
Q ss_pred EEecC
Q 032742 86 AAVKP 90 (135)
Q Consensus 86 v~~~p 90 (135)
+...+
T Consensus 76 l~~~~ 80 (81)
T 2dzi_A 76 LVVKP 80 (81)
T ss_dssp EECCC
T ss_pred EEEeC
Confidence 65543
No 16
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.75 E-value=2.3e-18 Score=116.19 Aligned_cols=75 Identities=20% Similarity=0.198 Sum_probs=67.7
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (135)
.+|+|+||+..|+. +.++|++++||++||++|++ .+|+|+++|||+|+|+.|.|+.+ |++|+|++|++|++.
T Consensus 3 ~~m~I~Vk~~~g~~-~~~~v~~~~TV~~LK~~I~~--~~gip~~~qrL~~~Gk~L~D~~t-----L~~~~I~~g~~i~l~ 74 (88)
T 2hj8_A 3 EPLSILVRNNKGRS-STYEVRLTQTVAHLKQQVSG--LEGVQDDLFWLTFEGKPLEDQLP-----LGEYGLKPLSTVFMN 74 (88)
T ss_dssp CEEEEEEEETTSCE-EEEEEESSSBHHHHHHHHHH--HTCSCTTTEEEESSSSCCCTTSB-----HHHHHCSTTCEEEEE
T ss_pred ccEEEEEECCCCCE-EEEEECCCCcHHHHHHHHHH--HhCCChhHEEEEECCEECCCCCc-----HHHcCCCCCCEEEEE
Confidence 47999999998854 88999999999999999999 99999999999999999999888 999999999999555
Q ss_pred ecC
Q 032742 88 VKP 90 (135)
Q Consensus 88 ~~p 90 (135)
..+
T Consensus 75 ~~~ 77 (88)
T 2hj8_A 75 LRL 77 (88)
T ss_dssp EC-
T ss_pred EEc
Confidence 443
No 17
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=4.7e-18 Score=115.62 Aligned_cols=79 Identities=23% Similarity=0.173 Sum_probs=68.3
Q ss_pred CCCceEEEEEeCCCCC-cEEEEecCCCcHHHHHHHHHhccCC--CCCCCceEEEecCeecCCCCCCCCCCcccc--CCCC
Q 032742 6 ISESVEITVKTIGPAP-PSRLSVSSPIKVRDLRKLIATSSAN--HLPIENLRLVFRGKVLDDTQDDDDRDDVYL--QLSN 80 (135)
Q Consensus 6 ~~~~m~I~VKt~~~~~-~~~i~v~~~~TV~dLK~~Ia~~~~~--~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~--~I~d 80 (135)
+..+|+|+||+.++.. .+.+++++++||++||++|++ .+ ++|+++|||||+|+.|+|+.+ |++| +|++
T Consensus 4 ~~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~--~~~~~i~~~~QrLi~~Gk~L~D~~t-----L~~~~~~i~~ 76 (93)
T 1wgd_A 4 GSSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSR--VYPERPRPEDQRLIYSGKLLLDHQC-----LRDLLPKQEK 76 (93)
T ss_dssp CSCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHH--HSTTCCCTTTCEEEETTEECCSSSC-----HHHHSCSSSC
T ss_pred CCcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHH--HhcCCCChHHeEEEECCEECcCcCC-----HHHHhcCCCC
Confidence 4567999999998763 366778799999999999999 87 999999999999999999888 9999 9999
Q ss_pred CCEEEEEecCC
Q 032742 81 GDSVIAAVKPK 91 (135)
Q Consensus 81 G~tIlv~~~p~ 91 (135)
|++|+++..+.
T Consensus 77 ~~~i~lv~~~~ 87 (93)
T 1wgd_A 77 RHVLHLVCNVK 87 (93)
T ss_dssp SEEEEEECCCC
T ss_pred CCEEEEEeCCC
Confidence 99995554443
No 18
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.75 E-value=3.3e-18 Score=114.70 Aligned_cols=72 Identities=25% Similarity=0.478 Sum_probs=65.9
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032742 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (135)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIl 85 (135)
...+|+|+||+.+++. +.+++++++||++||++|++ .+|+|+++|||+|+|+.|+|+.+ |++|+| +|++|+
T Consensus 14 ~~~~m~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~~~i-~g~~i~ 84 (88)
T 4eew_A 14 EPDSLEVLVKTLDSQT-RTFIVGAQMNVKEFKEHIAA--SVSIPSEKQRLIYQGRVLQDDKK-----LQEYNV-GGKVIH 84 (88)
T ss_dssp -CCEEEEEEEETTSCE-EEEEEETTCBHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTSB-----GGGGTC-TTEEEE
T ss_pred CCCeEEEEEEcCCCCE-EEEEECCCCCHHHHHHHHHH--HhCCCHHHEEEEECCEECCCCCc-----HHHcCC-CCcEEE
Confidence 3467999999998866 88999999999999999999 99999999999999999999888 999999 899994
Q ss_pred E
Q 032742 86 A 86 (135)
Q Consensus 86 v 86 (135)
+
T Consensus 85 l 85 (88)
T 4eew_A 85 L 85 (88)
T ss_dssp E
T ss_pred E
Confidence 4
No 19
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=7.6e-18 Score=112.37 Aligned_cols=78 Identities=21% Similarity=0.266 Sum_probs=70.1
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032742 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (135)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIl 85 (135)
+..+|+|+||+..+.. +.+++++++||.+||++|++ .+++|+++|||+|+|+.|.|+.+ |++|+|++|++|+
T Consensus 4 ~~~~m~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~gi~~~~qrL~~~Gk~L~d~~t-----L~~~~i~~g~~i~ 75 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGS-YAYAINPNSFILGLKQQIED--QQGLPKKQQQLEFQGQVLQDWLG-----LGIYGIQDSDTLI 75 (87)
T ss_dssp CSSSEEEEEEETTTEE-EEEEECSSSBHHHHHHHHHH--HTCCCTTTEEEEETTEECCSSSB-----HHHHTCCTTEEEE
T ss_pred CCCCEEEEEEcCCCCE-EEEEeCCCChHHHHHHHHHH--HhCCChHHEEEEECCEEccCCCC-----HHHCCCCCCCEEE
Confidence 4568999999988754 88999999999999999999 99999999999999999999888 9999999999996
Q ss_pred EEecCC
Q 032742 86 AAVKPK 91 (135)
Q Consensus 86 v~~~p~ 91 (135)
+.....
T Consensus 76 l~~~~~ 81 (87)
T 1wh3_A 76 LSKKKG 81 (87)
T ss_dssp EEECSC
T ss_pred EEEecc
Confidence 655443
No 20
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.75 E-value=4e-18 Score=113.62 Aligned_cols=74 Identities=19% Similarity=0.357 Sum_probs=68.2
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
..+|+|+||+.++.. +.+++++++||.+||++|++ .+++|+++|||+|+|+.|.|+.+ |.+|+|++|++|++
T Consensus 10 ~~~m~i~vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~gip~~~qrL~~~G~~L~d~~t-----L~~~~i~~~~~i~l 81 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKE-IEIDIEPTDKVERIKERVEE--KEGIPPQQQRLIYSGKQMNDEKT-----AADYKILGGSVLHL 81 (88)
T ss_dssp CCCEEEEEECTTSCE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGCCEEETTEECCTTSB-----GGGGTCCTTCEEEE
T ss_pred CCcEEEEEEcCCCCE-EEEEECCCCCHHHHHHHHHH--HHCcCHHHEEEEECCeECCCCCc-----HHHcCCCCCCEEEE
Confidence 457999999998866 88999999999999999999 99999999999999999999888 99999999999955
Q ss_pred Ee
Q 032742 87 AV 88 (135)
Q Consensus 87 ~~ 88 (135)
..
T Consensus 82 ~~ 83 (88)
T 3dbh_I 82 VL 83 (88)
T ss_dssp CC
T ss_pred EE
Confidence 43
No 21
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.75 E-value=6.5e-18 Score=109.86 Aligned_cols=72 Identities=28% Similarity=0.473 Sum_probs=65.6
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK 89 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~~ 89 (135)
|+|+||+ ++.. +.+++++++||++||++|++ .+|+|+++|||+|+|+.|.|+.+ |++|+|++|++|++...
T Consensus 5 m~i~vk~-~g~~-~~~~v~~~~tV~~LK~~i~~--~~~i~~~~qrL~~~gk~L~d~~t-----L~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDK-WEVNVAPESTVLQFKEAINK--ANGIPVANQRLIYSGKILKDDQT-----VESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----TGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEE-EEEEECCCCcHHHHHHHHHH--HhCCCHHHEEEEECCeEcCCCCC-----HHHcCCCCCCEEEEEEc
Confidence 8999999 6644 88999999999999999999 99999999999999999999888 99999999999966654
Q ss_pred C
Q 032742 90 P 90 (135)
Q Consensus 90 p 90 (135)
+
T Consensus 76 ~ 76 (77)
T 2bwf_A 76 Q 76 (77)
T ss_dssp C
T ss_pred C
Confidence 4
No 22
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=5.1e-18 Score=117.70 Aligned_cols=79 Identities=23% Similarity=0.318 Sum_probs=70.1
Q ss_pred CCCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCE
Q 032742 4 GEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDS 83 (135)
Q Consensus 4 ~~~~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~t 83 (135)
-..+.+|+|+||+.+++ +.++|++++||.+||++|++ .+++|+++|||+|+|+.|+|+.+ |++|+|++|++
T Consensus 17 ~~~~~~m~I~Vk~~~g~--~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~ygI~~gst 87 (100)
T 1yqb_A 17 RGSPHLIKVTVKTPKDK--EDFSVTDTCTIQQLKEEISQ--RFKAHPDQLVLIFAGKILKDPDS-----LAQCGVRDGLT 87 (100)
T ss_dssp SCCTTEEEEEEECSSCE--EEEEEETTCBHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTSB-----HHHHTCCTTCE
T ss_pred CCCCCeEEEEEEcCCCc--EEEEECCCCcHHHHHHHHHH--HHCcChhhEEEEECCEECCCcCc-----HHHCCCCCCCE
Confidence 34567899999998874 68999999999999999999 99999999999999999999888 99999999999
Q ss_pred EEEEecCC
Q 032742 84 VIAAVKPK 91 (135)
Q Consensus 84 Ilv~~~p~ 91 (135)
|++.....
T Consensus 88 I~l~~r~~ 95 (100)
T 1yqb_A 88 VHLVIKRQ 95 (100)
T ss_dssp EEEEECCC
T ss_pred EEEEEcCC
Confidence 95554443
No 23
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=1.5e-17 Score=111.59 Aligned_cols=78 Identities=24% Similarity=0.298 Sum_probs=69.1
Q ss_pred CCCceEEEEEeCCCCCcEEE-EecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032742 6 ISESVEITVKTIGPAPPSRL-SVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (135)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~i-~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI 84 (135)
.+.+|+|+||+..++..+.+ ++++++||.+||++|++ .+++|+++|||+|+|+.|.|+.+ |.+|+|++|++|
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~--~~gip~~~qrL~~~gk~L~d~~t-----L~~~~i~~g~~i 76 (89)
T 1wy8_A 4 GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWA--LFDVRPECQRLFYRGKQLENGYT-----LFDYDVGLNDII 76 (89)
T ss_dssp CSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHH--HSCCCTTTEEEEETTEECCSSSB-----HHHHTCCTTCEE
T ss_pred CCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHH--HHCcChhhEEEEECCeECCCCCC-----HHHCCCCCCCEE
Confidence 35789999999988434889 59999999999999999 99999999999999999998888 999999999999
Q ss_pred EEEecC
Q 032742 85 IAAVKP 90 (135)
Q Consensus 85 lv~~~p 90 (135)
++...+
T Consensus 77 ~l~~~~ 82 (89)
T 1wy8_A 77 QLLVRP 82 (89)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 554443
No 24
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.74 E-value=8.3e-18 Score=115.47 Aligned_cols=75 Identities=19% Similarity=0.280 Sum_probs=67.9
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCC-CCCCCCCccccCCCCCCEEE
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDT-QDDDDRDDVYLQLSNGDSVI 85 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~-~t~d~~~L~~~~I~dG~tIl 85 (135)
...|+|+||+.++ . +.++|++++||++||++|++ .+|+|+++|||+|+|+.|+|+ .+ |++|+|++|++|+
T Consensus 13 ~~~~~I~Vk~~~~-~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~~t-----L~~ygI~~gstl~ 83 (94)
T 2kan_A 13 VRKIHVTVKFPSK-Q-FTVEVDRTETVSSLKDKIHI--VENTPIKRMQLYYSGIELADDYRN-----LNEYGITEFSEIV 83 (94)
T ss_dssp SCCEEEEEECSSC-E-EEEEECTTCBHHHHHHHHHH--HSSSCTTTEEEEETTEEECCTTSB-----HHHHTCCTTEEEE
T ss_pred CCCEEEEEEcCCc-E-EEEEECCCCcHHHHHHHHHH--HHCcCHHHEEEEECCEECCCCccc-----HHHCCCCCCCEEE
Confidence 4679999999877 3 88999999999999999999 999999999999999999988 88 9999999999995
Q ss_pred EEecC
Q 032742 86 AAVKP 90 (135)
Q Consensus 86 v~~~p 90 (135)
+...+
T Consensus 84 lv~r~ 88 (94)
T 2kan_A 84 VFLKS 88 (94)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 55443
No 25
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=9.2e-18 Score=110.85 Aligned_cols=74 Identities=20% Similarity=0.339 Sum_probs=67.5
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (135)
.+|+|+||+..+.. +.+++++++||.+||++|++ .+++|+++|||+|+|+.|.|+.+ |++|+|++|++|++.
T Consensus 2 s~m~i~vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~~i~~~~qrL~~~g~~L~d~~t-----L~~~~i~~~~~l~l~ 73 (85)
T 3mtn_B 2 SHMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKWSTLFLL 73 (85)
T ss_dssp -CEEEEEECTTSCE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGCEEEETTEECCTTSB-----TGGGTCCTTCEEEEE
T ss_pred CeEEEEEEcCCCCE-EEEEECCCCCHHHHHHHHHH--HHCcChHHEEEEECCEECCCCCC-----HHHcCCCCCCEEEEE
Confidence 57999999998865 88999999999999999999 99999999999999999999888 999999999999555
Q ss_pred ec
Q 032742 88 VK 89 (135)
Q Consensus 88 ~~ 89 (135)
..
T Consensus 74 ~r 75 (85)
T 3mtn_B 74 LR 75 (85)
T ss_dssp CC
T ss_pred EE
Confidence 43
No 26
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=116.04 Aligned_cols=77 Identities=22% Similarity=0.322 Sum_probs=68.4
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
..+|+|+||+. +.. +.++|++++||++||++|++ .+|+|+++|||+|+|+.|.|+.+ |.+|+|++|++|++
T Consensus 23 ~~~m~I~Vk~~-g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~~gI~~g~~I~l 93 (101)
T 2klc_A 23 PKIMKVTVKTP-KEK-EEFAVPENSSVQQFKEEISK--RFKSHTDQLVLIFAGKILKDQDT-----LSQHGIHDGLTVHL 93 (101)
T ss_dssp CCCEEEEEECS-SCE-EEEEECSCCCHHHHHHHHHH--HHTCCGGGEEEEETTEEECTTCC-----TGGGTCCTTCEEEE
T ss_pred CCeEEEEEEeC-CcE-EEEEECCCCCHHHHHHHHHH--HHCcChhhEEEEECCEECCCcCc-----HHHcCCCCCCEEEE
Confidence 46799999998 544 78999999999999999999 99999999999999999998888 99999999999965
Q ss_pred EecCCC
Q 032742 87 AVKPKP 92 (135)
Q Consensus 87 ~~~p~~ 92 (135)
...+++
T Consensus 94 ~~~~~~ 99 (101)
T 2klc_A 94 VIKTQN 99 (101)
T ss_dssp EECCSS
T ss_pred EEcCCC
Confidence 554443
No 27
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=6.1e-18 Score=111.90 Aligned_cols=74 Identities=23% Similarity=0.338 Sum_probs=66.5
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (135)
.+|+|+||+..+.. +.+++++++||.+||++|++ .+++|+++|||+|+|+.|.|+.+ |++|+|++|++|++.
T Consensus 2 s~m~i~vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~~ip~~~qrL~~~g~~L~d~~t-----L~~~~i~~~~~i~l~ 73 (85)
T 3n3k_B 2 SHMRIVVKTLMGRT-IILEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIHNHSALYLL 73 (85)
T ss_dssp --CEEEEECGGGCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGEEEEETBEECCTTCB-----TTTTTCCTTCEEEEE
T ss_pred CeEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCCCHHHEEEEECCeECCCCCC-----HHHCCCCCCCEEEEE
Confidence 57999999988765 88999999999999999999 99999999999999999999888 999999999999555
Q ss_pred ec
Q 032742 88 VK 89 (135)
Q Consensus 88 ~~ 89 (135)
..
T Consensus 74 ~r 75 (85)
T 3n3k_B 74 LK 75 (85)
T ss_dssp EC
T ss_pred Ee
Confidence 43
No 28
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=7.4e-18 Score=116.22 Aligned_cols=76 Identities=14% Similarity=0.126 Sum_probs=67.3
Q ss_pred CCCceEEEEEeCCCCCcE-EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032742 6 ISESVEITVKTIGPAPPS-RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (135)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~-~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI 84 (135)
..++|+|+||+. + ..+ .+++++++||.+||++|++ .+|+|+++|||+|+|+.|+|+ + |++|+|++|++|
T Consensus 4 ~~~~m~i~Vk~~-g-~~~~~l~v~~~~TV~~lK~~I~~--~tgip~~~QkLi~~Gk~L~D~-t-----L~~~~I~~g~~i 73 (96)
T 1wgg_A 4 GSSGYSVTVKWG-K-EKFEGVELNTDEPPMVFKAQLFA--LTGVQPARQKVMVKGGTLKDD-D-----WGNIKMKNGMTV 73 (96)
T ss_dssp CCCEEEEEEEET-T-EEEEEEEEESSSCHHHHHHHHHH--HTCCCTTTSCCEETTEECCSS-C-----CCSCCCCSSCEE
T ss_pred CCcEEEEEEEEC-C-EEEEEEEECCCCcHHHHHHHHHH--HHCcCHHHeEEEECCcCCCCC-C-----HHHCCCCCCCEE
Confidence 346899999974 4 337 5999999999999999999 999999999999999999988 8 999999999999
Q ss_pred EEEecCC
Q 032742 85 IAAVKPK 91 (135)
Q Consensus 85 lv~~~p~ 91 (135)
++++.+.
T Consensus 74 ~l~~~~~ 80 (96)
T 1wgg_A 74 LMMGSAD 80 (96)
T ss_dssp ECCCCCC
T ss_pred EEEecch
Confidence 7776554
No 29
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=7.8e-18 Score=117.54 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=68.5
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (135)
.+|+|+||+.+|+. +.++|++++||++||++|++ .+|+|+++|||+|+|+.|.|+.+ |.+|+|++|++| ++
T Consensus 22 ~~m~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~ygI~~g~ti~lv 93 (106)
T 1ttn_A 22 YECQLRLRLSTGKD-LKLVVRSTDTVFHMKRRLHA--AEGVEPGSQRWFFSGRPLTDKMK-----FEELKIPKDYVVQVI 93 (106)
T ss_dssp CSEEEEEEETTTEE-EEEEECTTSHHHHHHHHHHH--TTCCCSTTCEEEETTEECCTTSH-----HHHCCCSSSCEEEEE
T ss_pred CeEEEEEEcCCCCE-EEEEeCCCCcHHHHHHHHHH--HHCcCcccEEEEECCEECCCCCc-----HHHcCCCCCCEEEEE
Confidence 46999999988855 88999999999999999999 99999999999999999999888 999999999999 54
Q ss_pred EecCC
Q 032742 87 AVKPK 91 (135)
Q Consensus 87 ~~~p~ 91 (135)
...|.
T Consensus 94 ~~~~~ 98 (106)
T 1ttn_A 94 VSQPV 98 (106)
T ss_dssp CCCSS
T ss_pred EeCCC
Confidence 44443
No 30
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=1.2e-17 Score=115.81 Aligned_cols=77 Identities=23% Similarity=0.299 Sum_probs=67.5
Q ss_pred CCceEEEEEeCCCC---CcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCC-CCCCCCCccccCCCCCC
Q 032742 7 SESVEITVKTIGPA---PPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDT-QDDDDRDDVYLQLSNGD 82 (135)
Q Consensus 7 ~~~m~I~VKt~~~~---~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~-~t~d~~~L~~~~I~dG~ 82 (135)
..+|+|+|++..+. ..+.++|++++||++||++|++ .+++|+++|||+|+|+.|.|+ .+ |++|+|++|+
T Consensus 5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~--~~gip~~~qrL~~~gk~L~D~~~t-----L~~ygI~~g~ 77 (102)
T 1v5o_A 5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCEL--ESGVPAEEAQIVYMEQLLTDDHCS-----LGSYGLKDGD 77 (102)
T ss_dssp SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHH--HTCCCGGGBCEEETTEEECCSSSB-----HHHHTCCTTE
T ss_pred CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHH--HHCcChHHeEEEECCEECCCCccc-----HHHCCCCCCC
Confidence 46799999997653 4478999999999999999999 999999999999999999877 57 9999999999
Q ss_pred EEEEEecC
Q 032742 83 SVIAAVKP 90 (135)
Q Consensus 83 tIlv~~~p 90 (135)
+|+++...
T Consensus 78 ~l~l~~~~ 85 (102)
T 1v5o_A 78 MVVLLQKD 85 (102)
T ss_dssp EEEECBCC
T ss_pred EEEEEECC
Confidence 99665543
No 31
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.73 E-value=1.2e-17 Score=107.75 Aligned_cols=71 Identities=18% Similarity=0.363 Sum_probs=65.4
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (135)
|+|+||+.++.. +.+++++++||++||++|++ .+++|+++|||+|+|+.|.|+.+ |++|+|++|++|++..
T Consensus 1 M~i~vk~~~g~~-~~~~v~~~~tv~~lK~~i~~--~~~i~~~~q~L~~~g~~L~d~~t-----L~~~~i~~g~~i~l~~ 71 (76)
T 1ndd_A 1 MLIKVKTLTGKE-IEIDIEPTDKVERIKERVEE--KEGIPPQQQRLIYSGKQMNDEKT-----AADYKILGGSVLHLVL 71 (76)
T ss_dssp CEEEEECTTSCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----GGGGTCCTTCEEEEEE
T ss_pred CEEEEECCCCCE-EEEEECCCChHHHHHHHHHH--HHCcChHHEEEEECCEECCCCCc-----HHHcCCCCCCEEEEEE
Confidence 789999988865 78999999999999999999 99999999999999999998888 9999999999995543
No 32
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1.1e-17 Score=113.38 Aligned_cols=79 Identities=25% Similarity=0.353 Sum_probs=67.7
Q ss_pred CCceEEEEEeCCCCCcEEEEecCC-----CcHHHHHHHHHhccCCCCCCCceEEEecCeecCC-CCCCCCCCccccCCCC
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSP-----IKVRDLRKLIATSSANHLPIENLRLVFRGKVLDD-TQDDDDRDDVYLQLSN 80 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~-----~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D-~~t~d~~~L~~~~I~d 80 (135)
+.+|+|+||+. +.. +.++++++ +||.+||++|++ .+|+|+++|||+|+|+.|.| +.+ |.+|+|++
T Consensus 5 ~~~~~v~Vk~~-~~~-~~i~v~~~~~~~~~TV~~LK~~i~~--~~gip~~~qrL~~~Gk~L~D~~~~-----L~~~~i~~ 75 (92)
T 1wxv_A 5 SSGLTVTVTHS-NEK-HDLHVTSQQGSSEPVVQDLAQVVEE--VIGVPQSFQKLIFKGKSLKEMETP-----LSALGIQD 75 (92)
T ss_dssp CSSEEEEEECS-SSE-EEEEECCCSSSSSCBHHHHHHHHHH--HTCCCTTTCEEEETTEEECCSSSB-----HHHHTCCS
T ss_pred CCeEEEEEEEC-CEE-EEEEECCCcCcccCcHHHHHHHHHH--HHCcCHHHEEEEECCeecCCCccc-----HHHCCCCC
Confidence 46899999995 433 78999995 999999999999 99999999999999999987 446 99999999
Q ss_pred CCEEEEEecCCCCC
Q 032742 81 GDSVIAAVKPKPPP 94 (135)
Q Consensus 81 G~tIlv~~~p~~~~ 94 (135)
|++|++...+.+++
T Consensus 76 g~~i~l~~~~~~~~ 89 (92)
T 1wxv_A 76 GCRVMLIGKKNSGP 89 (92)
T ss_dssp SEEEEEESCCSCSC
T ss_pred CCEEEEEecCCCCC
Confidence 99997666555443
No 33
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=8e-18 Score=114.79 Aligned_cols=77 Identities=25% Similarity=0.326 Sum_probs=68.5
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032742 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (135)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIl 85 (135)
...+|+|+||+. +.. +.++|++++||.+||++|++ .+++|+++|||+|+|+.|+|+.+ |.+|+|++|++|+
T Consensus 14 ~~~~m~i~Vk~~-g~~-~~~~v~~~~TV~~LK~~I~~--~~gip~~~qrL~~~Gk~L~D~~t-----L~~~gi~~g~~i~ 84 (96)
T 1wx8_A 14 SSRIIRVSVKTP-QDC-HEFFLAENSNVRRFKKQISK--YLHCNADRLVLIFTGKILRDQDI-----LSQRGILDGSTVH 84 (96)
T ss_dssp CSCEEEEEEECS-SSE-EEEEEETTCCHHHHHHHHHH--HTCSCTTTBCCEETTEECCTTSC-----HHHHTCCTTEEEE
T ss_pred CCCcEEEEEEEC-CeE-EEEEECCCCCHHHHHHHHHH--HhCCCHHHEEEEECCEECCCcCC-----HHHCCCCCCCEEE
Confidence 346899999998 543 88999999999999999999 99999999999999999998888 9999999999996
Q ss_pred EEecCC
Q 032742 86 AAVKPK 91 (135)
Q Consensus 86 v~~~p~ 91 (135)
+.....
T Consensus 85 l~~~~~ 90 (96)
T 1wx8_A 85 VVVRSH 90 (96)
T ss_dssp CCBCCS
T ss_pred EEEeCC
Confidence 555444
No 34
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.73 E-value=2e-17 Score=106.75 Aligned_cols=72 Identities=21% Similarity=0.352 Sum_probs=66.0
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK 89 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~~ 89 (135)
|+|+||+.++.. +.+++++++||++||++|++ .+++|+++|||+|+|+.|.|+.+ |++|+|++|++|++...
T Consensus 1 M~i~vk~~~g~~-~~i~v~~~~tv~~lK~~i~~--~~~i~~~~q~L~~~g~~L~d~~t-----L~~~~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 1 MQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQRESTLHLVLR 72 (76)
T ss_dssp CEEEEEETTSCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTCB-----TGGGTCCTTCEEEEEEC
T ss_pred CEEEEEcCCCCE-EEEEECCCCcHHHHHHHHHH--HHCcCHHHeEEEECCeECCCCCc-----HHHcCCCCCCEEEEEEe
Confidence 789999988865 88999999999999999999 99999999999999999998888 99999999999955543
No 35
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=9.8e-18 Score=115.30 Aligned_cols=74 Identities=22% Similarity=0.346 Sum_probs=67.0
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
..+|+|+||+.++.. +.++|++++||.+||++|++ .+++|+++|||+|+|+.|+|+.+ |.+|+|++|++|++
T Consensus 20 ~~~m~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~~~i~~g~~i~l 91 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKT-ITLEVESSDTIDNVKSKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHL 91 (98)
T ss_dssp --CCEEEEEETTCCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGCEEEETTEECCTTCB-----SGGGTCCTTEEEEE
T ss_pred CCeEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HhCCChhHEEEEECCEECCCCCc-----HHHCCCCCCCEEEE
Confidence 457999999998866 88999999999999999999 99999999999999999999888 99999999999954
Q ss_pred Ee
Q 032742 87 AV 88 (135)
Q Consensus 87 ~~ 88 (135)
..
T Consensus 92 ~~ 93 (98)
T 4hcn_B 92 VL 93 (98)
T ss_dssp EC
T ss_pred EE
Confidence 43
No 36
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=2e-17 Score=119.21 Aligned_cols=79 Identities=22% Similarity=0.320 Sum_probs=69.3
Q ss_pred CCCCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCC
Q 032742 3 MGEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGD 82 (135)
Q Consensus 3 ~~~~~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~ 82 (135)
+.++..+|+|+||+. +.. +.++|++++||.+||++|++ .+++|+++|||+|+|+.|.|+.+ |.+|+|++|+
T Consensus 26 ~~~~~~~m~I~Vk~~-g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~dygI~~gs 96 (125)
T 1j8c_A 26 APAEPKIIKVTVKTP-KEK-EEFAVPENSSVQQFKEAISK--RFKSQTDQLVLIFAGKILKDQDT-----LIQHGIHDGL 96 (125)
T ss_dssp CCCCCCCEEEEEECS-SCE-EEEEECTTCCHHHHHHHHHH--HHCSCSSSEEEEETTEEESTTSC-----GGGTTCSSSE
T ss_pred ccCCCCcEEEEEEeC-CeE-EEEEECCCCcHHHHHHHHHH--HHCcCcceEEEEECCEEcCCCCC-----HHHcCCCCCC
Confidence 344567899999998 544 88999999999999999999 99999999999999999998888 9999999999
Q ss_pred EEEEEecC
Q 032742 83 SVIAAVKP 90 (135)
Q Consensus 83 tIlv~~~p 90 (135)
+|++...+
T Consensus 97 tI~lv~~~ 104 (125)
T 1j8c_A 97 TVHLVIKR 104 (125)
T ss_dssp EEEEEEC-
T ss_pred EEEEEecc
Confidence 99555443
No 37
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=3e-17 Score=111.86 Aligned_cols=75 Identities=15% Similarity=0.248 Sum_probs=65.5
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCC-CCCCCCCccccCCCCCCEE
Q 032742 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDT-QDDDDRDDVYLQLSNGDSV 84 (135)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~-~t~d~~~L~~~~I~dG~tI 84 (135)
+..+|+|+||+..+.. +.++|++++||++||++|++ .. +++|||+|+|+.|.|+ .+ |.+|+|++|++|
T Consensus 4 ~~~~m~i~Vk~~~g~~-~~~~v~~~~TV~~LK~~i~~--~~---~~~qrLi~~Gk~L~D~~~t-----L~~y~i~~g~~i 72 (95)
T 1wia_A 4 GSSGINVRLKFLNDTE-ELAVARPEDTVGTLKSKYFP--GQ---ESQMKLIYQGRLLQDPART-----LSSLNITNNCVI 72 (95)
T ss_dssp CCCSEEEEEEETTTEE-EEEEECSSSBHHHHHHHHSS--ST---TTTCEEEETTEECCCSSCB-----TTTTTCCTTEEE
T ss_pred CCCeEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHh--hC---cCcEEEEECCEEccCCcCC-----HHHcCCCCCCEE
Confidence 3568999999988865 88999999999999999987 65 9999999999999988 88 999999999999
Q ss_pred EE-EecCC
Q 032742 85 IA-AVKPK 91 (135)
Q Consensus 85 lv-~~~p~ 91 (135)
++ ...|.
T Consensus 73 ~l~~~~~~ 80 (95)
T 1wia_A 73 HCHRSPPG 80 (95)
T ss_dssp EEECCCCC
T ss_pred EEEECCCC
Confidence 44 44444
No 38
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.72 E-value=1.2e-17 Score=113.50 Aligned_cols=77 Identities=21% Similarity=0.250 Sum_probs=68.5
Q ss_pred CCceEEEEEeCCCCCcEEE-EecCCCcHHHHHHHHHhccCCCCCCCceEEE---ecCeecCCCCCCCCCCccccCCCCCC
Q 032742 7 SESVEITVKTIGPAPPSRL-SVSSPIKVRDLRKLIATSSANHLPIENLRLV---FRGKVLDDTQDDDDRDDVYLQLSNGD 82 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i-~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI---~~Gk~L~D~~t~d~~~L~~~~I~dG~ 82 (135)
..+|+|+||+ .++. +.+ ++++++||.+||++|++ .+|+|+++|||+ |+|+.|+|+.+ |++|+|++|+
T Consensus 5 ~~~m~i~Vk~-~g~~-~~i~~v~~~~TV~~lK~~I~~--~~gip~~~QkLi~~k~~Gk~L~D~~~-----L~~~~i~~g~ 75 (90)
T 1v5t_A 5 SSGLPIIVKW-GGQE-YSVTTLSEDDTVLDLKQFLKT--LTGVLPERQKLLGLKVKGKPAENDVK-----LGALKLKPNT 75 (90)
T ss_dssp CCSCCEEEEE-TTEE-EEECSCCSSSBHHHHHHHHHH--HTCCCTTTCEEESCEETTEECCTTSB-----HHHHTCCTTE
T ss_pred CceEEEEEEE-CCEE-EEEEEeCCCCCHHHHHHHHHH--HHCcCHHHeEEEeeccCCcCcCCCCC-----HHHcCCCCCC
Confidence 4679999998 4433 789 99999999999999999 999999999999 99999998888 9999999999
Q ss_pred EEEEEecCCC
Q 032742 83 SVIAAVKPKP 92 (135)
Q Consensus 83 tIlv~~~p~~ 92 (135)
+|++++.+..
T Consensus 76 ~l~l~~~~~~ 85 (90)
T 1v5t_A 76 KIMMMGTRES 85 (90)
T ss_dssp EEEEECCCSS
T ss_pred EEEEEecCcc
Confidence 9977776653
No 39
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.72 E-value=4e-17 Score=111.81 Aligned_cols=81 Identities=19% Similarity=0.266 Sum_probs=67.0
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe-
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV- 88 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~- 88 (135)
|+|+||+.++.. +.+++++++||++||++|++ .+++|+++|||+|+|+.|.|+.+ |++|+|++|++|++..
T Consensus 1 M~I~Vk~~~g~~-~~~~v~~~~TV~~LK~~I~~--~~gi~~~~qrL~~~Gk~L~D~~t-----L~~~gi~~g~~i~l~~~ 72 (98)
T 1yx5_B 1 MQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVLR 72 (98)
T ss_dssp CEEEEEETTSCE-EEEECCTTCBHHHHHHHHHH--HTCCCGGGEEEEETTEECCTTSB-----TGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCcChhhEEEEECCEECCCCCC-----HHHcCCCCCCEEEEEEe
Confidence 789999988865 88999999999999999999 99999999999999999998888 9999999999995444
Q ss_pred cCCCCCcccc
Q 032742 89 KPKPPPRHLR 98 (135)
Q Consensus 89 ~p~~~~~~~~ 98 (135)
.+..++...+
T Consensus 73 ~~gG~~i~~~ 82 (98)
T 1yx5_B 73 LRGGRDPNSS 82 (98)
T ss_dssp CCCC------
T ss_pred CCCCCcCccc
Confidence 4334444444
No 40
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=4e-17 Score=114.21 Aligned_cols=79 Identities=22% Similarity=0.269 Sum_probs=67.5
Q ss_pred CCceEEEEEeCCC---CCcEEEEecC---------CCcHHHHHHHHHhccCC--CCCCCc-eEEEecCeecCCCCCCCCC
Q 032742 7 SESVEITVKTIGP---APPSRLSVSS---------PIKVRDLRKLIATSSAN--HLPIEN-LRLVFRGKVLDDTQDDDDR 71 (135)
Q Consensus 7 ~~~m~I~VKt~~~---~~~~~i~v~~---------~~TV~dLK~~Ia~~~~~--~ip~~~-QRLI~~Gk~L~D~~t~d~~ 71 (135)
...|+|+||+.++ .. +.+++++ ++||.+||++|++ .+ ++|+++ |||||+|+.|+|+.+
T Consensus 10 ~~~~~i~Vk~~~~~~~~~-~~l~v~~~~~~~v~~~~~TV~~LK~~i~~--~~~~gip~~~~qrLi~~Gk~L~D~~t---- 82 (107)
T 1x1m_A 10 LSDWHLAVKLADQPLAPK-SILQLPETELGEYSLGGYSISFLKQLIAG--KLQESVPDPELIDLIYCGRKLKDDQT---- 82 (107)
T ss_dssp CCSCCEEEEETTCTTSCC-EEECCCCCSSCSSCCCCCBHHHHHHHHHH--HCTTTCCCSSSEEEEETTEECCTTCB----
T ss_pred CCceEEEEEeCCCCCccE-EEEEecCccccccCcccCCHHHHHHHHHH--HhccCCChhhcEEEEECCeECCCCCc----
Confidence 4569999999888 44 7888554 5999999999999 89 999999 999999999999888
Q ss_pred CccccCCCCCCEEEEEecCCCC
Q 032742 72 DDVYLQLSNGDSVIAAVKPKPP 93 (135)
Q Consensus 72 ~L~~~~I~dG~tIlv~~~p~~~ 93 (135)
|.+|+|++|++|+++..+.++
T Consensus 83 -L~~y~i~~g~~i~lv~~~~~~ 103 (107)
T 1x1m_A 83 -LDFYGIQPGSTVHVLRKSWSG 103 (107)
T ss_dssp -HHHHTCCTTCEEEEEESSCCS
T ss_pred -HHHcCCCCCCEEEEEeCCCCC
Confidence 999999999999555544443
No 41
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.71 E-value=3.2e-17 Score=111.33 Aligned_cols=71 Identities=21% Similarity=0.347 Sum_probs=66.0
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (135)
|+|+||+.++.. +.+++++++||.+||++|++ .+++|+++|||+|+|+.|.|+.+ |.+|+|++|++|++..
T Consensus 2 m~i~vk~~~g~~-~~~~v~~~~TV~~LK~~i~~--~~gip~~~qrL~~~G~~L~d~~t-----L~~~~i~~~~~i~l~~ 72 (96)
T 3k9o_B 2 MQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVL 72 (96)
T ss_dssp CEEEEEETTCCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----TGGGTCCTTCEEEEEE
T ss_pred cEEEEEeCCCCE-EEEEECCCCCHHHHHHHHHh--hhCCChhHEEEEECCEECCCCCc-----HHHcCCCCCCEEEEEE
Confidence 899999998865 88999999999999999999 99999999999999999999888 9999999999995544
No 42
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2.4e-17 Score=111.31 Aligned_cols=73 Identities=16% Similarity=0.333 Sum_probs=66.4
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032742 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (135)
Q Consensus 9 ~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (135)
-|+|+|++..++. +.+++++++||++||++|++ .+++|+++|||+|+|+.|.|+.+ |++|+|++|++|++..
T Consensus 9 ~~~i~v~~~~G~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrL~~~Gk~L~D~~t-----L~~~gi~~g~~i~l~~ 80 (88)
T 1sif_A 9 GLQLFIKTLTGKT-FTVEMEPSDTIENLKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVL 80 (88)
T ss_dssp -CEEEEEETTSCE-EEEECCTTSBHHHHHHHHHH--HHCCCGGGCEEEETTEECCTTSB-----SGGGTCCTTCEEEEEC
T ss_pred ceEEEEEeCCCCE-EEEEECCCChHHHHHHHHHH--HHCcChhhEEEEECCEECCCCCc-----HHHcCCCCCCEEEEEE
Confidence 4899999999966 88999999999999999999 99999999999999999998888 9999999999995544
Q ss_pred c
Q 032742 89 K 89 (135)
Q Consensus 89 ~ 89 (135)
.
T Consensus 81 r 81 (88)
T 1sif_A 81 R 81 (88)
T ss_dssp -
T ss_pred e
Confidence 3
No 43
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.71 E-value=1.8e-17 Score=108.95 Aligned_cols=72 Identities=17% Similarity=0.336 Sum_probs=66.8
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (135)
+.|+|+||+..++. +.++|++++||++||++|++ +.|+|+++|||+|.|+.|.|+.+ +++|+|++|++|.+.
T Consensus 2 ~~m~i~vk~~~g~~-~~~~v~~~~tv~~lk~~i~~--~~gi~~~~qrL~~~G~~L~d~~t-----l~~~~i~~~~~i~l~ 73 (79)
T 2uyz_B 2 EYIKLKVIGQDSSE-IHFKVKMTTHLKKLKESYCQ--RQGVPMNSLRFLFEGQRIADNHT-----PKELGMEEEDVIEVY 73 (79)
T ss_dssp CEEEEEEECTTCCE-EEEEEETTSCTHHHHHHHHH--HHTCCGGGEEEEETTEECCTTCC-----HHHHTCCTTEEEEEE
T ss_pred CeEEEEEECCCCCE-EEEEECCCChHHHHHHHHHH--HHCCCcccEEEEECCEEeCCCCC-----HHHcCCCCCCEEEEE
Confidence 46999999998865 88999999999999999999 99999999999999999999988 999999999999443
No 44
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3e-17 Score=118.03 Aligned_cols=84 Identities=13% Similarity=0.173 Sum_probs=72.0
Q ss_pred CCceEEEEE-eCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-
Q 032742 7 SESVEITVK-TIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV- 84 (135)
Q Consensus 7 ~~~m~I~VK-t~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI- 84 (135)
..+++|+|+ +.++.. +.++++++.||++||+++++ .+++|+++|||||+||.|+|+.+ |.+|||++|.||
T Consensus 13 ~~~itvkv~l~~~~~k-~tv~v~~d~TV~dLKe~ls~--~~~iP~e~qrLIy~GKiLKD~eT-----L~~~gIk~g~TIh 84 (118)
T 2daf_A 13 DSLATVKVVLIPVGQE-IVIPFKVDTILKYLKDHFSH--LLGIPHSVLQIRYSGKILKNNET-----LVQHGVKPQEIVQ 84 (118)
T ss_dssp SSCEEEEEEETTTCCE-EEEEECSSSCSHHHHHHHHH--HHTCCTTTEEEEETTEEECSSCC-----HHHHSCCSSCEEE
T ss_pred CccEEEEEEEcCCCcE-EEEEeCCCCcHHHHHHHHHh--hhCCChHHEEEEECCeEcCCcch-----HHHcCCCCCCEEE
Confidence 345888888 444544 89999999999999999999 99999999999999999999999 999999999999
Q ss_pred EEEecCCCCCcccc
Q 032742 85 IAAVKPKPPPRHLR 98 (135)
Q Consensus 85 lv~~~p~~~~~~~~ 98 (135)
|++....|-.-+++
T Consensus 85 Lvi~s~~p~~~p~~ 98 (118)
T 2daf_A 85 VEIFSTNPDLYPVR 98 (118)
T ss_dssp EEEEESCTTTSCCC
T ss_pred EEEecCCCccCcce
Confidence 77776665554444
No 45
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.70 E-value=5.1e-17 Score=114.47 Aligned_cols=73 Identities=21% Similarity=0.330 Sum_probs=67.4
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (135)
.+|+|+||+..++. +.++|++++||.+||++|++ .+++|+++|||+|+|+.|.|+.+ |.+|+|++|++|++.
T Consensus 34 ~~m~I~Vk~~~G~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~~gI~~gs~I~l~ 105 (111)
T 3vdz_A 34 LAMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLV 105 (111)
T ss_dssp GCEEEEEECSSSCE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----TTTTTCCTTCEEEEE
T ss_pred ccEEEEEEeCCCCE-EEEEeCCCCCHHHHHHHHHH--HhCCChHHEEEEECCEECCCCCc-----HHHCCCCCCCEEEEE
Confidence 47999999998865 88999999999999999999 99999999999999999999888 999999999999544
Q ss_pred e
Q 032742 88 V 88 (135)
Q Consensus 88 ~ 88 (135)
.
T Consensus 106 ~ 106 (111)
T 3vdz_A 106 L 106 (111)
T ss_dssp E
T ss_pred E
Confidence 3
No 46
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=5.9e-17 Score=112.80 Aligned_cols=75 Identities=24% Similarity=0.331 Sum_probs=67.7
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032742 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (135)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIl 85 (135)
+..+|+|+||+.+++ +.++|++++||.+||++|++ .+++++++|||+|+|+.|+|+.+ |.+|+|++|++|+
T Consensus 14 ~~~~m~I~Vk~~~g~--~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~~gi~~g~~i~ 84 (106)
T 1wx7_A 14 DPHLIKVTVKTPKDK--EDFSVTDTCTIQQLKEEISQ--RFKAHPDQLVLIFAGKILKDPDS-----LAQCGVRDGLTVH 84 (106)
T ss_dssp CSSEEEEEEECSSCE--EEEEEETTCCHHHHHHHHHH--HHTCCTTTEEEEETTEECCTTSC-----HHHHTCCTTEEEE
T ss_pred CCceEEEEEEeCCCc--EEEEECCCCcHHHHHHHHHH--HHCcChhhEEEEECCEECCCcCc-----HHHcCCCCCCEEE
Confidence 356899999998874 68999999999999999999 99999999999999999998888 9999999999995
Q ss_pred EEec
Q 032742 86 AAVK 89 (135)
Q Consensus 86 v~~~ 89 (135)
+...
T Consensus 85 l~~~ 88 (106)
T 1wx7_A 85 LVIK 88 (106)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 5543
No 47
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.69 E-value=4.1e-17 Score=112.20 Aligned_cols=73 Identities=16% Similarity=0.333 Sum_probs=67.5
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
+..|+|+||+..|+. +.++|.+++||++||++|++ +.|+|+++|||+|.|+.|.|+.+ |++|+|++|++|.+
T Consensus 19 ~~~m~I~Vk~~~g~~-~~l~v~~~~tv~~lK~~i~~--~~gip~~~qrLif~Gk~L~d~~t-----l~dy~i~~g~~I~l 90 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSE-IHFKVKMTTHLKKLKESYCQ--RQGVPMNSLRFLFEGQRIADNHT-----PKELGMEEEDVIEV 90 (97)
T ss_dssp CCEEEEEEECTTCCE-EEEEEETTSCTHHHHHHHHH--HHTCCGGGEEEEETTEECCTTCC-----HHHHTCCTTCEEEE
T ss_pred CCcEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCCChhhEEEEECCeEcCCCCC-----HHHCCCCCCCEEEE
Confidence 456999999998865 88999999999999999999 99999999999999999999988 99999999999944
Q ss_pred E
Q 032742 87 A 87 (135)
Q Consensus 87 ~ 87 (135)
.
T Consensus 91 ~ 91 (97)
T 1wyw_B 91 Y 91 (97)
T ss_dssp E
T ss_pred E
Confidence 3
No 48
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.69 E-value=1.5e-16 Score=111.72 Aligned_cols=78 Identities=17% Similarity=0.229 Sum_probs=69.0
Q ss_pred CCceEEEEEeC---CCCCcEEEEecC-CCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCC
Q 032742 7 SESVEITVKTI---GPAPPSRLSVSS-PIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGD 82 (135)
Q Consensus 7 ~~~m~I~VKt~---~~~~~~~i~v~~-~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~ 82 (135)
...|+|+|++. .+.. +.+++++ ++||.+||++|++ .+|+|+++|||+|+|+.|+|+.+ |++|+|++|+
T Consensus 25 ~~~i~i~Vk~~~~~~g~~-~~l~v~~l~~TV~~LK~~I~~--~~gip~~~QrL~~~Gk~L~D~~t-----L~~y~I~~g~ 96 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQF-MEITVQSLSENVGSLKEKIAG--EIQIPANKQKLSGKAGFLKDNMS-----LAHYNVGAGE 96 (111)
T ss_dssp CSCEEEEECCTTCSSSCC-EEEEESCSSSBHHHHHHHHHH--HTTCCTTTSEEECSSSBCCTTSB-----TTTTTCSSSC
T ss_pred CCcEEEEEEecccCCCcE-EEEEecCCCCcHHHHHHHHHH--HHCCCHHHeEEEECCEECCCCCc-----HHHCCCCCCC
Confidence 35799999998 5654 8899998 9999999999999 99999999999999999999888 9999999999
Q ss_pred EEEEEecCCC
Q 032742 83 SVIAAVKPKP 92 (135)
Q Consensus 83 tIlv~~~p~~ 92 (135)
+|++......
T Consensus 97 ~l~l~~r~~G 106 (111)
T 1we6_A 97 ILTLSLRERS 106 (111)
T ss_dssp EEEEECSSCC
T ss_pred EEEEEEEcCC
Confidence 9966654443
No 49
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.1e-17 Score=116.25 Aligned_cols=71 Identities=30% Similarity=0.491 Sum_probs=63.2
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032742 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (135)
Q Consensus 9 ~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (135)
+|+|+||+ ++.. +.++|++++||++||++|++ .+|+|+++|||+|+|+.|+|+.+ |++|+|++|++|+++.
T Consensus 28 ~i~I~Vk~-~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~~gI~~g~tI~lv~ 98 (101)
T 3m63_B 28 SLNIHIKS-GQDK-WEVNVAPESTVLQFKEAINK--ANGIPVANQRLIYSGKILKDDQT-----VESYHIQDGHSVHLVK 98 (101)
T ss_dssp -CCEEEEC-SSCC-CCBCCCTTSBHHHHHHHHHH--HHSCCSTTCCEEETTEECCTTSB-----TTTTTCCTTEEEEECC
T ss_pred EEEEEEEE-CCEE-EEEEeCCCCCHHHHHHHHHH--HHCcChHHEEEEECCEECCCcCc-----HHHCCCCCCCEEEEEe
Confidence 58899998 5544 78999999999999999999 99999999999999999999888 9999999999995443
No 50
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.69 E-value=4.1e-17 Score=113.64 Aligned_cols=71 Identities=17% Similarity=0.183 Sum_probs=62.1
Q ss_pred CceEEEEEeCCCCC-cEEEEecCCCcHHHHHHHHHhccCC-CC-CCCceEEEecCeecCCCCCCCCCCcccc--CCCCCC
Q 032742 8 ESVEITVKTIGPAP-PSRLSVSSPIKVRDLRKLIATSSAN-HL-PIENLRLVFRGKVLDDTQDDDDRDDVYL--QLSNGD 82 (135)
Q Consensus 8 ~~m~I~VKt~~~~~-~~~i~v~~~~TV~dLK~~Ia~~~~~-~i-p~~~QRLI~~Gk~L~D~~t~d~~~L~~~--~I~dG~ 82 (135)
..|+|+||+.++.. .+.+++++++||++||++|++ +. |. |+++|||||+||.|+|+.+ |++| +|++|+
T Consensus 22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~--~~~g~pp~~~QrLIy~Gk~L~D~~t-----L~~y~~~I~~~~ 94 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSN--VYPSKPLTKDQRLVYSGRLLPDHLQ-----LKDILRKQDEYH 94 (99)
T ss_dssp -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHH--HSTTCCCTTTCCEEETTEEECTTSB-----THHHHTTTCSEE
T ss_pred CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHH--HhcCCCChhhEEEEECCEECCCCCC-----HHHHhcCCCCCC
Confidence 46999999988863 368899999999999999997 54 44 4699999999999999988 9999 999999
Q ss_pred EEE
Q 032742 83 SVI 85 (135)
Q Consensus 83 tIl 85 (135)
+|.
T Consensus 95 tih 97 (99)
T 2kdb_A 95 MVH 97 (99)
T ss_dssp EEE
T ss_pred EEE
Confidence 994
No 51
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=4.6e-16 Score=111.41 Aligned_cols=83 Identities=14% Similarity=0.216 Sum_probs=66.8
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhcc----CCC--CCCCceEEEecCeecCCCCCCCCCCccccCCC
Q 032742 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSS----ANH--LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLS 79 (135)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~----~~~--ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~ 79 (135)
..++|+|+||+..|.. +.++|++++||++||++|++.. +.+ +|+++|||||.||.|+|+.+ |++|+|+
T Consensus 13 ~~~~m~I~vKtl~G~t-~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~T-----L~~y~I~ 86 (116)
T 1wgh_A 13 PADMINLRLILVSGKT-KEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVT-----LGALKLP 86 (116)
T ss_dssp CSSSEEEEEECSSSCE-EEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCB-----TTTTTCC
T ss_pred CCCeEEEEEEeCCCCE-EEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCc-----HHHcCCC
Confidence 3568999999999854 8999999999999999999711 224 47999999999999999999 9999998
Q ss_pred CCCE--EEEEecCCCCC
Q 032742 80 NGDS--VIAAVKPKPPP 94 (135)
Q Consensus 80 dG~t--Ilv~~~p~~~~ 94 (135)
.|+. |.+...+.+|+
T Consensus 87 ~~~~~tlhLvlr~~~~~ 103 (116)
T 1wgh_A 87 FGKTTVMHLVARETLPE 103 (116)
T ss_dssp SSCEEEEEEEECSSCSS
T ss_pred CCCceEEEEEccCCCCC
Confidence 8864 43444444443
No 52
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=108.03 Aligned_cols=72 Identities=14% Similarity=0.155 Sum_probs=64.4
Q ss_pred ceEEEEEeCCCCCc-EEE-EecCCCcHHHHHHHHHhccC-CCCCCCceEEEec--CeecCCCCCCCCCCccccCCCCCCE
Q 032742 9 SVEITVKTIGPAPP-SRL-SVSSPIKVRDLRKLIATSSA-NHLPIENLRLVFR--GKVLDDTQDDDDRDDVYLQLSNGDS 83 (135)
Q Consensus 9 ~m~I~VKt~~~~~~-~~i-~v~~~~TV~dLK~~Ia~~~~-~~ip~~~QRLI~~--Gk~L~D~~t~d~~~L~~~~I~dG~t 83 (135)
+|+|+||+..++.. ..+ +|++++||++||++|++ . .++||++|||+|. |+.|+|+.+ |++|+|++|++
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~--~~~~i~~~~QrL~~~~~Gk~L~D~~t-----L~~y~i~~~st 82 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTK--THPQWYPARQSLRLDPKGKSLKDEDV-----LQKLPVGTTAT 82 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHH--HCSSSCTTTCCEESSTTSCCCCTTCB-----TTTSSCCSEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHH--HhcCCChHHeEEEecCCCcCcCCCCC-----HHHcCCCCCCE
Confidence 59999999987663 358 99999999999999997 5 6999999999976 999999888 99999999999
Q ss_pred EEEE
Q 032742 84 VIAA 87 (135)
Q Consensus 84 Ilv~ 87 (135)
|+++
T Consensus 83 l~~K 86 (88)
T 2dzj_A 83 LYFR 86 (88)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9774
No 53
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.67 E-value=7.8e-17 Score=110.04 Aligned_cols=72 Identities=14% Similarity=0.162 Sum_probs=63.3
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
..+|+|+||+ ++ .+.++|++++||++||++|++ .+++|+++|||+|+|+.|+|+.+ |++|+|++|++|.+
T Consensus 17 ~~~m~I~Vk~--g~-~~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~y~I~~gstI~l 86 (93)
T 2l7r_A 17 RGSMQLFVRA--QE-LHTFEVTGQETVAQIKAHVAS--LEGIAPEDQVVLLAGAPLEDEAT-----LGQCGVEALTTLEV 86 (93)
T ss_dssp ---CEEEEES--SS-EEEEECCSSCBHHHHHHHHHH--HHTCCGGGCEEEETTEECCTTSB-----HHHHTCCSSCEEEE
T ss_pred CCcEEEEEEC--CC-EEEEEeCCCCcHHHHHHHHHH--HhCcChhHEEEEECCEECCCCCc-----HHHCCCCCCCEEEE
Confidence 4579999999 43 378999999999999999999 99999999999999999999888 99999999999955
Q ss_pred Ee
Q 032742 87 AV 88 (135)
Q Consensus 87 ~~ 88 (135)
..
T Consensus 87 v~ 88 (93)
T 2l7r_A 87 AG 88 (93)
T ss_dssp EC
T ss_pred EE
Confidence 43
No 54
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.67 E-value=2.7e-16 Score=110.46 Aligned_cols=74 Identities=20% Similarity=0.316 Sum_probs=67.7
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
..+|+|+||+..+.. +.+++++++||.+||++|++ .+++|+++|||+|+|+.|.|+.+ |++|+|++|++|++
T Consensus 33 ~~~m~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~~gI~~gs~I~l 104 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHL 104 (111)
T ss_dssp SSCEEEEEECSSSCE-EEEEECTTCBHHHHHHHHHH--HHCCCTTTEEEEETTEECCSSCB-----TTTTTCCTTCEEEE
T ss_pred CCeEEEEEEcCCCCE-EEEEeCCCCCHHHHHHHHHH--HHCcCcccEEEEECCEECCCCCc-----HHHcCCCCCCEEEE
Confidence 458999999988765 88999999999999999999 99999999999999999998888 99999999999955
Q ss_pred Ee
Q 032742 87 AV 88 (135)
Q Consensus 87 ~~ 88 (135)
..
T Consensus 105 ~~ 106 (111)
T 2ojr_A 105 VL 106 (111)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 55
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.67 E-value=6.4e-16 Score=111.92 Aligned_cols=80 Identities=14% Similarity=0.207 Sum_probs=65.5
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhcc----CCCC--CCCceEEEecCeecCCCCCCCCCCccccCCCC
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSS----ANHL--PIENLRLVFRGKVLDDTQDDDDRDDVYLQLSN 80 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~----~~~i--p~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~d 80 (135)
..+|.|+||+..|+. +.++|++++||++||++|++.. +.++ ++++|||||.||.|+|+.+ |++|+|+.
T Consensus 15 ~~~m~I~vktl~G~~-~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~T-----L~~y~I~~ 88 (125)
T 2gow_A 15 ADMINLRLILVSGKT-KEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVT-----LGALKLPF 88 (125)
T ss_dssp TTCEEEEEECTTSCE-EEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCB-----TGGGCCCT
T ss_pred CCeEEEEEEeCCCCE-EEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCc-----HHHcCCCC
Confidence 456999999998854 8999999999999999998611 2456 5999999999999999999 99999998
Q ss_pred CCE--EEEEecCCC
Q 032742 81 GDS--VIAAVKPKP 92 (135)
Q Consensus 81 G~t--Ilv~~~p~~ 92 (135)
|++ |.+...+.+
T Consensus 89 ~~~~tlhlv~r~~~ 102 (125)
T 2gow_A 89 GKTTVMHLVARETL 102 (125)
T ss_dssp TSEEEEEEEECSCC
T ss_pred CCceEEEEEecCCC
Confidence 884 444444433
No 56
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.49 E-value=4.1e-18 Score=110.93 Aligned_cols=71 Identities=20% Similarity=0.265 Sum_probs=65.1
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (135)
|+|+||+.+|.. +.+++++++||++||++|++ .+|+|+++|||+|+|+.|.|+.+ |++|+|++|++|++..
T Consensus 1 M~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~gi~~~~qrL~~~gk~L~d~~t-----L~~~~i~~g~~i~l~~ 71 (76)
T 3b1l_X 1 MIVFVRFNSSYG-FPVEVDSDTSILQLKEVVAK--QQGVPADQLRVIFAGKELPNHLT-----VQNCDLEQQSIVHIVQ 71 (76)
Confidence 789999988865 78999999999999999998 99999999999999999998888 9999999999995443
No 57
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=6.3e-17 Score=111.15 Aligned_cols=75 Identities=13% Similarity=0.219 Sum_probs=64.9
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
..+|+|+||+. + ..+.+++++++||.+||++|++ .+++|+++|||+|+|+.| |+.+ |.+|+|++|++|++
T Consensus 15 ~~~~~i~Vk~~-g-~~~~i~v~~~~TV~~LK~~I~~--~tgip~~~QrL~~~Gk~L-dd~t-----L~~~~i~~g~~i~l 84 (95)
T 1v86_A 15 KELVDLKIIWN-K-TKHDVKVPLDSTGSELKQKIHS--ITGLPPAMQKVMYKGLVP-EDKT-----LREIKVTSGAKIMV 84 (95)
T ss_dssp CCCEEEEEEET-T-EEEEEEECTTSBHHHHHHHHHH--HHCSCSTTCCCBSSSBCC-SSSB-----HHHHCCCTTEEEEE
T ss_pred CceEEEEEEEC-C-EEEEEEECCCCcHHHHHHHHHH--HHCcCHHHeEEEECCeeC-CcCc-----HHHCCCCCCCEEEE
Confidence 35699999964 3 3378999999999999999999 999999999999999999 4447 99999999999977
Q ss_pred EecCC
Q 032742 87 AVKPK 91 (135)
Q Consensus 87 ~~~p~ 91 (135)
+..+.
T Consensus 85 v~~~~ 89 (95)
T 1v86_A 85 VGSTI 89 (95)
T ss_dssp CCSSC
T ss_pred Eeccc
Confidence 66554
No 58
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.65 E-value=2.6e-16 Score=105.92 Aligned_cols=74 Identities=26% Similarity=0.392 Sum_probs=63.5
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (135)
+++.+.++. +++. +.+++++++||++||++|++ .+|+|+++|||+|+|+.|+|+.+ |++|+|++|++|++.
T Consensus 11 ~~~~~~~~~-~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrL~~~Gk~L~D~~t-----L~~~gi~~g~~l~l~ 81 (85)
T 2kd0_A 11 STIKLTVKF-GGKS-IPLSVSPDCTVKDLKSQLQP--ITNVLPRGQKLIFKGKVLVETST-----LKQSDVGSGAKLMLM 81 (85)
T ss_dssp CCEEEEEEE-TTEE-EEEEECTTSBHHHHHHHHHH--HHCCCTTTCEEEETTEECCTTCB-----TTTTTCCTTEEEEEE
T ss_pred CcEEEEEEE-CCEE-EEEEECCCCcHHHHHHHHHH--HHCcChHHEEEEECCeECCCcCC-----HHHCCCCCCCEEEEE
Confidence 455555544 5544 78999999999999999999 99999999999999999998888 999999999999776
Q ss_pred ecC
Q 032742 88 VKP 90 (135)
Q Consensus 88 ~~p 90 (135)
..|
T Consensus 82 ~s~ 84 (85)
T 2kd0_A 82 ASQ 84 (85)
T ss_dssp CCC
T ss_pred EeC
Confidence 654
No 59
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=6.2e-16 Score=109.53 Aligned_cols=75 Identities=19% Similarity=0.296 Sum_probs=68.2
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (135)
..++|+||+..|+. +.+++++++||++||++|++ .+++|+++|||+|+|+.|.|+.+ |++|+|++|++|++.
T Consensus 8 ~~~~i~vk~l~G~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~ygI~~gstI~l~ 79 (114)
T 2kdi_A 8 GEFQIFAKTLTGKT-ITLEVESSDTIDNVKSKIQD--KEGIPPDQQRLIWAGKQLEDGRT-----LSDYNIQRESTLHLV 79 (114)
T ss_dssp CCCEEEEEETTCCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTCB-----TTTTTCCSSCEEEEE
T ss_pred CcEEEEEEeCCCcE-EEEEECCCCcHHHHHHHHHH--HHCcChHHEEEEECCEECCCCCc-----HHHCCCCCCCEEEEE
Confidence 46899999999965 88999999999999999999 99999999999999999998888 999999999999554
Q ss_pred ecC
Q 032742 88 VKP 90 (135)
Q Consensus 88 ~~p 90 (135)
...
T Consensus 80 ~~~ 82 (114)
T 2kdi_A 80 LRL 82 (114)
T ss_dssp ECC
T ss_pred EEc
Confidence 443
No 60
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.65 E-value=3.7e-16 Score=117.65 Aligned_cols=71 Identities=23% Similarity=0.354 Sum_probs=65.9
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (135)
|+|+||+.+|+. +.+++++++||.+||++|++ .+|+|+++|||+|+|+.|+|+.+ |++|+|++|++|.+..
T Consensus 1 MqI~Vk~~~Gk~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~y~I~~gstI~Lvl 71 (169)
T 3l0w_B 1 MQIFVKTLTGKT-ITLEVESSDTIDNVKSKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVL 71 (169)
T ss_dssp CEEEEEETTSCE-EEEECCTTCBHHHHHHHHHH--HHCCCTTTEEEEETTEECCTTSB-----GGGGTCCTTCEEEEEE
T ss_pred CEEEEEeCCCCE-EEEEeCCCCCHHHHHHHHHH--HHCcCHHHEEEEECCccccCcCc-----HHHcCCCCCCEEEEEE
Confidence 789999999865 88999999999999999999 99999999999999999999888 9999999999994443
No 61
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.65 E-value=5.1e-16 Score=109.62 Aligned_cols=75 Identities=16% Similarity=0.188 Sum_probs=66.0
Q ss_pred ceEEEEEeCCC-CCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCC-CCCCEE-E
Q 032742 9 SVEITVKTIGP-APPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQL-SNGDSV-I 85 (135)
Q Consensus 9 ~m~I~VKt~~~-~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I-~dG~tI-l 85 (135)
.|+|+|++..+ ..++++++++++||++||++|++ +.|+||++|||+|+|+.++|+.+ |.+||| ++|+++ +
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~--k~Gipp~~QRli~ggkll~D~~T-----L~~ygI~~~G~t~hL 96 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFL--DYGFPPVLQQWVIGQRLARDQET-----LHSHGVRQNGDSAYL 96 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEEECTTCB-----TGGGTCCSTTCEEEE
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHH--HhCCCHHHEEEeccCeEccCcCc-----HHHcCCCCCCCEEEE
Confidence 48999999875 34478999999999999999999 99999999999999999999888 999999 599999 5
Q ss_pred EEecC
Q 032742 86 AAVKP 90 (135)
Q Consensus 86 v~~~p 90 (135)
++...
T Consensus 97 ~l~~~ 101 (105)
T 4dbg_A 97 YLLSA 101 (105)
T ss_dssp EECCC
T ss_pred EEEec
Confidence 55443
No 62
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.65 E-value=6.7e-16 Score=115.14 Aligned_cols=74 Identities=20% Similarity=0.335 Sum_probs=67.6
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
..+|+|+||+.+++. +.++|++++||.+||++|++ .+|+|+++|||+|+|+.|+|+.+ |++|+|++|++|++
T Consensus 18 ~~~m~i~Vk~~~g~~-~~l~v~~~~tV~~lK~~I~~--~~gip~~~QrL~~~g~~L~d~~t-----L~~~~i~~~~~l~l 89 (172)
T 3u30_A 18 GSHMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHL 89 (172)
T ss_dssp -CCEEEEEEETTTEE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTCB-----TGGGTCCTTCEEEE
T ss_pred CCcEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCcChHHEEEEECCccccccCC-----HhHcCCcccceeee
Confidence 457999999998866 88999999999999999999 99999999999999999999888 99999999999944
Q ss_pred Ee
Q 032742 87 AV 88 (135)
Q Consensus 87 ~~ 88 (135)
..
T Consensus 90 ~~ 91 (172)
T 3u30_A 90 VL 91 (172)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 63
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.65 E-value=1.4e-15 Score=110.43 Aligned_cols=68 Identities=15% Similarity=0.248 Sum_probs=61.6
Q ss_pred CCceEEEEEeCCCCCcE-EEEecCCCcHHHHHHHH-----HhccCCCCCC--CceEEEecCeecCCCCCCCCCCccccCC
Q 032742 7 SESVEITVKTIGPAPPS-RLSVSSPIKVRDLRKLI-----ATSSANHLPI--ENLRLVFRGKVLDDTQDDDDRDDVYLQL 78 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~-~i~v~~~~TV~dLK~~I-----a~~~~~~ip~--~~QRLI~~Gk~L~D~~t~d~~~L~~~~I 78 (135)
.+.|+|+||+..|+. + .+++++++||.+||++| ++ +.++|+ ++|||||.||.|+|+.+ |++|+|
T Consensus 14 ~~~~~i~~kt~~G~~-i~~l~v~psdTV~~lK~kI~~~~p~d--kegiP~~~~qQrLIy~GK~LeD~~T-----Lsdy~I 85 (126)
T 1se9_A 14 HNQLEIKFRLTDGSD-IGPKAFPDATTVSALKETVISEWPRE--KENGPKTVKEVKLISAGKVLENSKT-----VKDYRS 85 (126)
T ss_dssp CCCEEEEEEETTSCE-EEEEEECTTCBHHHHHHHHHHHSCTT--CSSSCCSGGGEEEEETTEECCTTSB-----GGGGSC
T ss_pred cccEEEEEEECCCCE-EEeeecCccCHHHHHHHHHHhhcccc--cccCCCChhhEEEEECCeECcCCCc-----HHHcCC
Confidence 478999999999976 6 69999999999999999 45 667886 89999999999999999 999999
Q ss_pred CCCC
Q 032742 79 SNGD 82 (135)
Q Consensus 79 ~dG~ 82 (135)
+.|+
T Consensus 86 ~~~~ 89 (126)
T 1se9_A 86 PVSN 89 (126)
T ss_dssp CTTS
T ss_pred CcCC
Confidence 9994
No 64
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=1.7e-16 Score=111.89 Aligned_cols=73 Identities=21% Similarity=0.192 Sum_probs=64.7
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC---------------CceEEEecCeecC-CCCCCCCC
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI---------------ENLRLVFRGKVLD-DTQDDDDR 71 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~---------------~~QRLI~~Gk~L~-D~~t~d~~ 71 (135)
..|+|+||+.+++. +.|+|++++||++||++|++ +.++|+ ++|||||.|+.|. |+.+
T Consensus 6 ~~M~I~Vk~l~g~~-~~v~V~~~~TV~dLK~~I~~--~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~t---- 78 (105)
T 1v2y_A 6 SGMTVRVCKMDGEV-MPVVVVQNATVLDLKKAIQR--YVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKK---- 78 (105)
T ss_dssp CSEEEEEECSSSCE-EEEEECTTCBHHHHHHHHHH--HHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSB----
T ss_pred CcEEEEEEecCCCE-EEEEECCCChHHHHHHHHHH--HhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCC----
Confidence 56999999999976 99999999999999999999 888887 4579999999997 4567
Q ss_pred CccccCCCCCCEE-EEEe
Q 032742 72 DDVYLQLSNGDSV-IAAV 88 (135)
Q Consensus 72 ~L~~~~I~dG~tI-lv~~ 88 (135)
|++|+|++|++| +|+.
T Consensus 79 -L~dygI~~g~~l~lv~~ 95 (105)
T 1v2y_A 79 -LRDYGIRNRDEVSFIKK 95 (105)
T ss_dssp -HHHHTCCSSEEEEEEEC
T ss_pred -HHHcCCCCCCEEEEEeh
Confidence 999999999999 5543
No 65
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.64 E-value=9.3e-16 Score=112.62 Aligned_cols=74 Identities=20% Similarity=0.201 Sum_probs=67.9
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
...|+|+||+..|+. +.+++++++||++||++|++ ..|+|+++|||+|+|+.|+|+.+ |++|+|++|++|.+
T Consensus 79 ~~~m~i~vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~gip~~~q~L~~~G~~L~d~~t-----L~~y~i~~g~~l~l 150 (159)
T 3rt3_B 79 DEPLSILVRNNKGRS-STYEVRLTQTVAHLKQQVSG--LEGVQDDLFWLTFEGKPLEDQLP-----LGEYGLKPLSTVFM 150 (159)
T ss_dssp CCCEEEEEECTTSCE-EEEEECTTSBHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTSB-----GGGGTCCTTCEEEE
T ss_pred CCcEEEEEECCCCCE-EEEEeCCCCCHHHHHHHHHH--HHCCCHHHEEEEECCeecCCCCC-----HHHcCCCCCCEEEE
Confidence 457999999998866 88999999999999999999 99999999999999999999888 99999999999944
Q ss_pred Ee
Q 032742 87 AV 88 (135)
Q Consensus 87 ~~ 88 (135)
..
T Consensus 151 ~~ 152 (159)
T 3rt3_B 151 NL 152 (159)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 66
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.63 E-value=9.5e-16 Score=112.55 Aligned_cols=72 Identities=25% Similarity=0.295 Sum_probs=66.9
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE-e-cCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV-F-RGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI-~-~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (135)
|+|+||+.+++. +.+++++++||++||++|++ .+|+|+++|||+ | +|+.|+|+.+ |++|+|++|++|.+.
T Consensus 3 m~i~vk~~~g~~-~~l~v~~~~tV~~lK~~I~~--~~gip~~~QrL~~~~~g~~L~d~~t-----L~~y~i~~~~~l~l~ 74 (159)
T 3rt3_B 3 WDLTVKMLAGNE-FQVSLSSSMSVSELKAQITQ--KIGVHAFQQRLAVHPSGVALQDRVP-----LASQGLGPGSTVLLV 74 (159)
T ss_dssp CEEEEEETTSCE-EEEECCTTCCHHHHHHHHHH--HHCCCGGGEEEEEETTCCBCCTTSC-----GGGGTCCTTCEEEEE
T ss_pred eEEEEEECCCCE-EEEEeCCCCcHHHHHHHHHH--HhCCCHHHEEEEEcCCCCCCCCCCC-----HHHcCCCCCCEEEEE
Confidence 899999998865 88999999999999999999 999999999999 9 7999998888 999999999999655
Q ss_pred ec
Q 032742 88 VK 89 (135)
Q Consensus 88 ~~ 89 (135)
..
T Consensus 75 ~~ 76 (159)
T 3rt3_B 75 VD 76 (159)
T ss_dssp EC
T ss_pred cc
Confidence 55
No 67
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.62 E-value=3e-16 Score=112.88 Aligned_cols=72 Identities=15% Similarity=0.136 Sum_probs=62.4
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCC-------CCC
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLS-------NGD 82 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~-------dG~ 82 (135)
|+++|+...++.++.+++++++||++||++|+. +.|+|+++|||||.|+.|+|+.+ |++|+|+ +++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~--~egIP~~qQrLi~~Gk~LeD~~T-----Lsdy~I~~~~a~~q~~s 73 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEG--ILKRPPEEQRLYKDDQLLDDGKT-----LGECGFTSQTARPQAPA 73 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----HHHHTCCTTTSBTTBCE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHH--HhCCCHHHeEEEECCeECCCCCC-----HHHcCcccccccCCCCC
Confidence 455555555655478999999999999999999 99999999999999999999999 9999999 799
Q ss_pred EE-EEEe
Q 032742 83 SV-IAAV 88 (135)
Q Consensus 83 tI-lv~~ 88 (135)
|| +++.
T Consensus 74 tL~L~lr 80 (118)
T 2fnj_B 74 TVGLAFR 80 (118)
T ss_dssp EEEEEEB
T ss_pred EEEEEec
Confidence 99 5554
No 68
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.62 E-value=1.9e-15 Score=106.75 Aligned_cols=74 Identities=18% Similarity=0.284 Sum_probs=65.5
Q ss_pred CceEEEEEeCCC---------CCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCC
Q 032742 8 ESVEITVKTIGP---------APPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQL 78 (135)
Q Consensus 8 ~~m~I~VKt~~~---------~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I 78 (135)
..|+|.|++.+. ...+.++|++++||.+||++|++ .+|+|+++|||+|+|+.|.|+.+ |++|+|
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrL~~~Gk~L~D~~t-----L~~y~i 96 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHE--ATGMPAGKQKLQYEGIFIKDSNS-----LAYYNM 96 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHH--HSSCCTTTEEEEETTEEECTTSB-----HHHHTC
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHH--HHCCChHHEEEEECCEECCCCCC-----HHHCCC
Confidence 579999998752 23478999999999999999999 99999999999999999999888 999999
Q ss_pred CCCCEEEEEe
Q 032742 79 SNGDSVIAAV 88 (135)
Q Consensus 79 ~dG~tIlv~~ 88 (135)
++|++|++..
T Consensus 97 ~~g~~i~lv~ 106 (115)
T 1we7_A 97 ASGAVIHLAL 106 (115)
T ss_dssp CSSCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 9999995444
No 69
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.61 E-value=6.6e-16 Score=111.09 Aligned_cols=72 Identities=14% Similarity=0.138 Sum_probs=64.7
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCC-------CC
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSN-------GD 82 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~d-------G~ 82 (135)
|.++|+...++.++.+++.+++||.+||++|+. ..|+|+++|||||.|+.|+|+.+ |++|||++ ++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~--~~giPp~qQrLI~~Gk~LeD~kT-----L~dy~I~~~ta~~q~~a 73 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEG--ILKRPPDEQRLYKDDQLLDDGKT-----LGECGFTSQTARPQAPA 73 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----TTTTTCCGGGSBTTBCE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHH--HHCCCHHHeEEEeCCeECCCcCC-----HHHcCCCcCcccCCCCC
Confidence 567777766776577899999999999999999 99999999999999999999999 99999999 99
Q ss_pred EE-EEEe
Q 032742 83 SV-IAAV 88 (135)
Q Consensus 83 tI-lv~~ 88 (135)
+| |+..
T Consensus 74 tl~Lvlr 80 (118)
T 4ajy_B 74 TVGLAFR 80 (118)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 99 6654
No 70
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.61 E-value=2.1e-15 Score=108.73 Aligned_cols=73 Identities=21% Similarity=0.339 Sum_probs=66.8
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK 89 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~~ 89 (135)
|+|+||+..+.. +.+++++++||++||++|++ .+|+|+++|||+|+|+.|.|+.+ |.+|+|++|++|++...
T Consensus 1 M~i~vk~~~g~~-~~~~v~~~~tv~~lK~~i~~--~~gip~~~q~L~~~g~~L~d~~t-----L~~~~i~~~~~l~l~~~ 72 (152)
T 3b08_A 1 MQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVLR 72 (152)
T ss_dssp CEEEEEETTSCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----TGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCE-EEEEECCCCCHHHHHHHHHH--HHCcChHHeEEEECCeECcCccc-----HHHhccCCCCeeEEEee
Confidence 789999988865 88999999999999999999 99999999999999999998888 99999999999965554
Q ss_pred C
Q 032742 90 P 90 (135)
Q Consensus 90 p 90 (135)
+
T Consensus 73 ~ 73 (152)
T 3b08_A 73 L 73 (152)
T ss_dssp C
T ss_pred c
Confidence 4
No 71
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.61 E-value=1.2e-15 Score=125.16 Aligned_cols=114 Identities=16% Similarity=0.159 Sum_probs=82.1
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE---ecCeecCCCCCCCCCCccccCCCCCC
Q 032742 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV---FRGKVLDDTQDDDDRDDVYLQLSNGD 82 (135)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI---~~Gk~L~D~~t~d~~~L~~~~I~dG~ 82 (135)
+.++|+|+||+. |+. +.+++++++||++||++|++ .+|+||++|||| |+|+.|+|+.+ |++|+|++|+
T Consensus 2 ~~~~i~i~Vk~~-g~~-~~v~v~~~~Tv~~lK~~I~~--~tgVpp~~QkLi~~k~~Gk~l~D~~~-----L~~~~ik~g~ 72 (320)
T 3shq_A 2 EVKEVVVIVKWS-GKE-YPVDLTDQDTVEVLRHEIFR--KTQVRPERQKLLNLKYKGKTAADNVK-----ISALELKPNF 72 (320)
T ss_dssp --CEEEEEEEET-TEE-EEEEEETTSBHHHHHHHHHH--HHCCCGGGCEETTCBSSSSBCCTTSB-----TTSSCCC--C
T ss_pred CCceEEEEEEEC-CEE-EEEEECCCCcHHHHHHHHHH--HHCcCHHHeEEeecccCCcccCcccc-----HHHcCCCCCC
Confidence 346899999984 433 78999999999999999999 999999999999 89999999888 9999999999
Q ss_pred EEEEEecCCC--------C---CccccCCCCCCccccccccCCCcchHHHHHHHHhc
Q 032742 83 SVIAAVKPKP--------P---PRHLRDDTCIDDDDLDLFKLPQSTSRWKRKLLLFS 128 (135)
Q Consensus 83 tIlv~~~p~~--------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (135)
+|++++.+.. | +..+-|...+.++....-.-|...+...+++-.|.
T Consensus 73 ~l~L~gs~~~~i~~~~~~p~~~~~~~eD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (320)
T 3shq_A 73 KLMMVGSTEADIEDACSLPDNIGEVVDDFDDADEREESVAHSAVYLAKVQRRVRDYK 129 (320)
T ss_dssp EEEEECCCC----------CCCSCCCCTTCCCCC--CCSTTSHHHHHHHHHHHHHCC
T ss_pred EEEEEccchhhhcccccCCCcCCcccccCCCcccchhhhhhhhhhHHHHHHHHHhcC
Confidence 9977765542 1 12222332222222333555666777777776665
No 72
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.60 E-value=1.7e-15 Score=116.54 Aligned_cols=72 Identities=21% Similarity=0.321 Sum_probs=66.7
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032742 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (135)
Q Consensus 9 ~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (135)
.|+|+||+.+++. +.++|++++||.+||++|++ .+++|+++|||+|+|+.|+|+.+ |++|+|++|++|.+..
T Consensus 105 eMqI~VKtl~Gkt-~~l~V~~s~TV~~LK~kI~~--~~gIp~~~QrLi~~Gk~L~D~~t-----L~dygI~~gstI~Lvl 176 (189)
T 3q3f_A 105 GGQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVL 176 (189)
T ss_dssp CEEEEEECTTSCE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGCCEEETTEECCTTCB-----GGGGTCCTTCEEEECC
T ss_pred ceeeeeecCCCCE-EEEEeCCCCcHHHHHHHHHh--ccCCCHHHEEEEECCEECCCCCC-----HHHCCCCCCCEEEEEE
Confidence 4999999998866 88999999999999999999 99999999999999999999888 9999999999994443
No 73
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.60 E-value=5.9e-15 Score=100.17 Aligned_cols=75 Identities=12% Similarity=0.180 Sum_probs=62.9
Q ss_pred ceEEEEEeCCCC-CcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe-------cCeecCCCCCCCCCCccccCCCC
Q 032742 9 SVEITVKTIGPA-PPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF-------RGKVLDDTQDDDDRDDVYLQLSN 80 (135)
Q Consensus 9 ~m~I~VKt~~~~-~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~-------~Gk~L~D~~t~d~~~L~~~~I~d 80 (135)
+++|.|.+...+ ....+.+++++||++||++|+. .+|+||++||||| .|+.++|+.+ |++|+|++
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~--~~Gip~~~QrLi~~~~~~~~~g~~l~d~~t-----L~~Y~i~~ 74 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFT--HFATPPEYMQLQLIDDRGITIEKNMANDKQ-----LGYYQCRD 74 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHT--TSCCCGGGEEEEEECTTSCEEESSCCTTSB-----GGGGTCCT
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHH--HHCCCHHHEEEEEecCCCCceeeEcCCCCC-----HHHCCCCC
Confidence 577778755333 3246899999999999999999 9999999999997 4889999888 99999999
Q ss_pred CCEE-EEEecC
Q 032742 81 GDSV-IAAVKP 90 (135)
Q Consensus 81 G~tI-lv~~~p 90 (135)
|++| ++-..|
T Consensus 75 g~~ihlvd~~P 85 (86)
T 4b6w_A 75 EFVIHVVDLQP 85 (86)
T ss_dssp TCEEEEEECCC
T ss_pred CCEEEEEeCCC
Confidence 9999 555444
No 74
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.60 E-value=4.6e-15 Score=106.14 Aligned_cols=78 Identities=15% Similarity=0.227 Sum_probs=65.2
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC---ee----cCCCCCCCCCCccccCCCC
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG---KV----LDDTQDDDDRDDVYLQLSN 80 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~G---k~----L~D~~t~d~~~L~~~~I~d 80 (135)
.+|+|+|++.+...++.+++++++||++||++|+. .+|+||++|||+|.| +. ++|+.+ |.+|+|++
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~--~~Gip~~~qrL~~~g~~~~~~~~l~~D~~t-----L~~y~i~~ 77 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLEL--VVGTTVDSMRIQLFDGDDQLKGELTDGAKS-----LKDLGVRD 77 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHH--HHCCCTTTEEEEEECSSSSEEEECCCCSSB-----TTTTTCCS
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHH--HhCCCHHHeEEEEecCCCccccccCCCcCC-----HHHCCCCC
Confidence 57999999876643478999999999999999999 999999999999988 42 367666 99999999
Q ss_pred CCEEEEE-ecCCC
Q 032742 81 GDSVIAA-VKPKP 92 (135)
Q Consensus 81 G~tIlv~-~~p~~ 92 (135)
|++|+|+ ..|..
T Consensus 78 g~~ihvvd~~p~~ 90 (122)
T 1t0y_A 78 GYRIHAVDVTGGN 90 (122)
T ss_dssp SEEEEEEECTTCC
T ss_pred CCEEEEEeCCCCC
Confidence 9999554 44443
No 75
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.60 E-value=7.8e-17 Score=115.96 Aligned_cols=71 Identities=23% Similarity=0.354 Sum_probs=0.0
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (135)
|+|+||+.+|.. +.++|++++||++||++|++ .+|+|+++|||+|+|+.|+|+.+ |++|+|++|++|.+..
T Consensus 1 M~I~Vk~~~G~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~~~I~~gsti~l~~ 71 (128)
T 3u5e_m 1 MQIFVKTLTGKT-ITLEVESSDTIDNVKSKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVL 71 (128)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCE-EEEEeCCCCCHHHHHHHHHH--HhCcChHHEEEEECCEECCCCCc-----hhhhccCCCCEEEEEE
Confidence 789999998866 88999999999999999999 99999999999999999999888 9999999999994443
No 76
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.58 E-value=4.5e-15 Score=102.53 Aligned_cols=74 Identities=9% Similarity=0.116 Sum_probs=63.4
Q ss_pred CCCceEEEEEeCCCC-CcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec--Ce---ec-CCCCCCCCCCccccCC
Q 032742 6 ISESVEITVKTIGPA-PPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR--GK---VL-DDTQDDDDRDDVYLQL 78 (135)
Q Consensus 6 ~~~~m~I~VKt~~~~-~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~--Gk---~L-~D~~t~d~~~L~~~~I 78 (135)
..+.|+|+|++..+. ..+.+++++++||++||++|++ .+|+||++|||+|. |+ .| +|+.+ |++|+|
T Consensus 12 ~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~--~~GiP~~~QrL~~~~~g~~~~~L~~D~~t-----L~~Y~i 84 (95)
T 2kjr_A 12 KSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEI--LTGGCAGTMKVQVFKGDTCVSTMDNNDAQ-----LGYYAN 84 (95)
T ss_dssp CCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHH--HHCSCTTTEEEEEEETTEEEEECCCTTSB-----HHHHCC
T ss_pred CCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHH--HHCcCHHHeEEEEecCCcccceeCCCCCC-----HhHCCc
Confidence 356899999987664 2367899999999999999999 99999999999998 45 34 77777 999999
Q ss_pred CCCCEEEE
Q 032742 79 SNGDSVIA 86 (135)
Q Consensus 79 ~dG~tIlv 86 (135)
++|++|.+
T Consensus 85 ~~gstihl 92 (95)
T 2kjr_A 85 SDGLRLHV 92 (95)
T ss_dssp SSSCEEEE
T ss_pred CCCCEEEE
Confidence 99999944
No 77
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.58 E-value=6.6e-15 Score=102.16 Aligned_cols=75 Identities=12% Similarity=0.170 Sum_probs=63.5
Q ss_pred CCceEEEEEeCCCC-CcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCe---e----cCCCCCCCCCCccccCC
Q 032742 7 SESVEITVKTIGPA-PPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGK---V----LDDTQDDDDRDDVYLQL 78 (135)
Q Consensus 7 ~~~m~I~VKt~~~~-~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk---~----L~D~~t~d~~~L~~~~I 78 (135)
++.+.|.|++.... ..+.+++++++||++||++|+. .+|+||++|||+|.|+ . ++|+.+ |++|+|
T Consensus 12 ~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~--~~Gip~~~QrLi~~g~~g~~~~~L~~D~~t-----L~~Y~I 84 (97)
T 2kj6_A 12 DDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWK--KCGTSVNSMALELYDDSGSKVAVLSDDSRP-----LGFFSP 84 (97)
T ss_dssp CCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHH--HHCCCTTSEEEEEECSSSCBCCCSSGGGSC-----HHHHCC
T ss_pred CceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHH--HHCcCHHHeEEEEecCCCcccceecCCcCC-----HHHCCC
Confidence 56899999986553 3478999999999999999999 9999999999999984 3 366666 999999
Q ss_pred CCCCEE-EEEe
Q 032742 79 SNGDSV-IAAV 88 (135)
Q Consensus 79 ~dG~tI-lv~~ 88 (135)
++|++| ++-.
T Consensus 85 ~~g~~Ihlvd~ 95 (97)
T 2kj6_A 85 FDGFRLHIIDL 95 (97)
T ss_dssp CSCCEEEEEEC
T ss_pred CCCCEEEEEeC
Confidence 999999 5443
No 78
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.57 E-value=1e-14 Score=105.19 Aligned_cols=74 Identities=20% Similarity=0.343 Sum_probs=67.1
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (135)
..|+|+|++..|.. +.+++++++||.+||++|++ .+|+|+++|||+|+|+.|.|+.+ |.+|+|++|++|++.
T Consensus 75 ~~~~i~Vk~~~g~~-~~~~v~~~~tv~~lK~~i~~--~~gi~~~~qrL~~~g~~L~d~~t-----L~~~~i~~~~~i~l~ 146 (152)
T 3b08_A 75 GGMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLV 146 (152)
T ss_dssp TCEEEEEEESSSCE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----TGGGTCCTTCEEEEE
T ss_pred cccceeeeecCCCE-EEEEeCCCCcHHHHHHHHHH--HhCcChhhEEEEECCEECCCCCC-----HHHcCCCCCCEEEEE
Confidence 35899999988865 88999999999999999999 99999999999999999999888 999999999999554
Q ss_pred ec
Q 032742 88 VK 89 (135)
Q Consensus 88 ~~ 89 (135)
..
T Consensus 147 ~r 148 (152)
T 3b08_A 147 LR 148 (152)
T ss_dssp EC
T ss_pred Ee
Confidence 43
No 79
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.57 E-value=1.1e-14 Score=99.69 Aligned_cols=74 Identities=11% Similarity=0.065 Sum_probs=63.2
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC---ee----cCCCCCCCCCCccccCCCC
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG---KV----LDDTQDDDDRDDVYLQLSN 80 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~G---k~----L~D~~t~d~~~L~~~~I~d 80 (135)
.+|+|+|++.+....+.+++++++||++||++|+. .+|+|+++|||+|.| +. ++|+.+ |.+|+|++
T Consensus 6 ~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~--~~gip~~~qrL~~~~~~g~~~~~l~~D~~t-----L~~y~i~~ 78 (95)
T 1v6e_A 6 SGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLEL--VVGSPASCMELELYGADDKFYSKLDQEDAL-----LGSYPVDD 78 (95)
T ss_dssp CCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHH--HTCSCTTTCBCEEECSSSCEEEECCCSSSB-----TTSSSCCT
T ss_pred cEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHH--HHCCCHHHeEEEEeCCCCccccccCCCcCC-----HhHCCCCC
Confidence 35899999876643478999999999999999999 999999999999987 43 467777 99999999
Q ss_pred CCEEEEEe
Q 032742 81 GDSVIAAV 88 (135)
Q Consensus 81 G~tIlv~~ 88 (135)
|++|+|+-
T Consensus 79 g~~l~v~d 86 (95)
T 1v6e_A 79 GCRIHVID 86 (95)
T ss_dssp TCEEEEBC
T ss_pred CCEEEEEE
Confidence 99996554
No 80
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.55 E-value=3.8e-16 Score=116.36 Aligned_cols=70 Identities=23% Similarity=0.375 Sum_probs=0.0
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv~ 87 (135)
|+|+|++.+|.. +.++|++++||++||++|++ .+++|+++|||+|+|+.|+|+.+ |++|+|++|++| ++.
T Consensus 1 MqI~VK~l~G~~-~~l~V~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~dygI~~gstL~Lvl 71 (152)
T 3u5c_f 1 MQIFVKTLTGKT-ITLEVESSDTIDNVKSKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVL 71 (152)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCE-EEEEECCCCCHHHHHHHHHH--HhCCCHHHEEEEECCEEccccCc-----HHHcCCCCCCEEEEEe
Confidence 789999998865 88999999999999999999 99999999999999999999888 999999999999 443
No 81
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.54 E-value=1.3e-14 Score=108.17 Aligned_cols=73 Identities=21% Similarity=0.336 Sum_probs=66.8
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (135)
..|.|+||+..++. +.+++++++||.+||++|++ .+|+|+++|||+|+|+.|+|+.+ |.+|+|++|++|.+.
T Consensus 95 gg~~i~Vk~~~g~~-~~l~v~~~~tV~~lK~~I~~--~~gip~~~q~L~~~g~~L~D~~t-----L~~y~i~~g~tl~l~ 166 (172)
T 3u30_A 95 GGMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLV 166 (172)
T ss_dssp CCEEEEEEESSCCE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGCCEEETTEECCTTSB-----SGGGTCCTTCEEEEC
T ss_pred ccccceeecccCcc-eeEEecCCCCHHHHHHHHHH--HhCCCceeEEEEECCccCCCCCc-----HHHhCCCCCCEEEEE
Confidence 45889999988865 88999999999999999999 99999999999999999999888 999999999999554
Q ss_pred e
Q 032742 88 V 88 (135)
Q Consensus 88 ~ 88 (135)
.
T Consensus 167 ~ 167 (172)
T 3u30_A 167 L 167 (172)
T ss_dssp C
T ss_pred E
Confidence 3
No 82
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2.1e-14 Score=100.25 Aligned_cols=71 Identities=11% Similarity=0.173 Sum_probs=58.1
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe--cCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF--RGKVLDDTQDDDDRDDVYLQLSNGDSVIAA 87 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~--~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~ 87 (135)
|.+.+++.+++. +.|+|++++||++||++|++ ++|+||++|||+| .|+ |+|+.+ |++|+|++|++|++.
T Consensus 9 m~~~~vk~~Gk~-~~v~v~~~~TV~~LK~~I~~--~tgIpp~~QkLi~~~~gk-L~D~~t-----Ls~~~I~~gstL~lv 79 (100)
T 2dzm_A 9 MLDFRVEYRDRN-VDVVLEDTCTVGEIKQILEN--ELQIPVSKMLLKGWKTGD-VEDSTV-----LKSLHLPKNNSLYVL 79 (100)
T ss_dssp EEEEEEECSSCE-EEEEEETTSBHHHHHHHHHH--HHCCCTTTCCEECCSSSC-CCTTSB-----HHHHCCCSEEEEEEC
T ss_pred eEEEEEEeCCeE-EEEEECCCCcHHHHHHHHHH--HHCCChhHeEEEccCCCC-CCCcCC-----HHHcCCCCCCEEEEE
Confidence 444444445544 78999999999999999999 9999999999996 555 888777 999999999998554
Q ss_pred ec
Q 032742 88 VK 89 (135)
Q Consensus 88 ~~ 89 (135)
-.
T Consensus 80 l~ 81 (100)
T 2dzm_A 80 TP 81 (100)
T ss_dssp CS
T ss_pred ec
Confidence 33
No 83
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.53 E-value=1.6e-14 Score=101.06 Aligned_cols=75 Identities=25% Similarity=0.310 Sum_probs=64.5
Q ss_pred CceEEEEEeCCCCCcEEEEec-CCCcHHHHHHHHHhccCCCCCCCceEEEecCe-----------e----cCCCCCCCCC
Q 032742 8 ESVEITVKTIGPAPPSRLSVS-SPIKVRDLRKLIATSSANHLPIENLRLVFRGK-----------V----LDDTQDDDDR 71 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~-~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk-----------~----L~D~~t~d~~ 71 (135)
+.|.|.||+..|. ..|+|+ +++||.+||++|++ .+++|+++|||+|.|+ . +.|+.+
T Consensus 6 ~~M~irvrs~~G~--~~v~v~~~~~Tv~~LK~kI~~--~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~t---- 77 (107)
T 1wf9_A 6 SGTMLRVRSRDGL--ERVSVDGPHITVSQLKTLIQD--QLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLR---- 77 (107)
T ss_dssp CCEEEEEECSSCE--EEEEECCTTSBHHHHHHHHHH--HSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCB----
T ss_pred CeEEEEEECCCCC--EEEEECCCCCcHHHHHHHHHH--HhCcCcccCEEEECCccccccCccccccccccCCCCCC----
Confidence 4488999999885 478999 99999999999999 9999999999999998 3 355555
Q ss_pred CccccCCCCCCEEEEEecCC
Q 032742 72 DDVYLQLSNGDSVIAAVKPK 91 (135)
Q Consensus 72 ~L~~~~I~dG~tIlv~~~p~ 91 (135)
|++|+|++|++|++...+.
T Consensus 78 -L~~~gi~~G~~L~l~~~~~ 96 (107)
T 1wf9_A 78 -ISSLNLAHGSMVYLAYEGE 96 (107)
T ss_dssp -GGGTCCCTTCEEECCCSSC
T ss_pred -HHHCCCCCCCEEEEEeCCC
Confidence 9999999999997665543
No 84
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.52 E-value=1.4e-14 Score=121.04 Aligned_cols=78 Identities=22% Similarity=0.380 Sum_probs=67.2
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhcc-CCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSS-ANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV- 84 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~-~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI- 84 (135)
..+|+|+||+..++. +.|+|++++||.+||++|++.. +.|+|+++|||||+||.|+|+.+ |.+|+|++|++|
T Consensus 5 ~~~M~I~VKtl~Gk~-~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~t-----L~dygI~~gstIv 78 (368)
T 1oqy_A 5 SSAVTITLKTLQQQT-FKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP-----IRDYRIDEKNFVV 78 (368)
T ss_dssp -CCCCEEEEETTTEE-EEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSB-----TTTTCCCTTSCEE
T ss_pred CceEEEEEEeCCCCE-EEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCC-----HHHcCCCCCCEEE
Confidence 457999999998865 8899999999999999998721 35699999999999999999888 999999999999
Q ss_pred EEEecC
Q 032742 85 IAAVKP 90 (135)
Q Consensus 85 lv~~~p 90 (135)
++..++
T Consensus 79 ~lv~k~ 84 (368)
T 1oqy_A 79 VMVTKT 84 (368)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 555444
No 85
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.50 E-value=5e-14 Score=115.33 Aligned_cols=73 Identities=22% Similarity=0.343 Sum_probs=67.4
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
..+|+|+||+..++. +.++|++++||++||++|++ .+++|+++|||+|+|+.|+|+.+ |++|+|++|++|++
T Consensus 231 ~~~MqI~VKtl~Gk~-~~leV~~s~TV~dLK~kI~~--~~GIp~~~QRLi~~Gk~L~D~~T-----LsdygI~~gstL~L 302 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHL 302 (307)
T ss_dssp CCCEEEEEECTTSCE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGCEEEETTEECCTTSB-----TGGGTCCTTCEEEE
T ss_pred CCeEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCcChHHEEEEeCCeecCCCCC-----HHHcCCCCCCEEEE
Confidence 468999999998865 88999999999999999999 99999999999999999999888 99999999999944
Q ss_pred E
Q 032742 87 A 87 (135)
Q Consensus 87 ~ 87 (135)
.
T Consensus 303 v 303 (307)
T 3ai5_A 303 V 303 (307)
T ss_dssp E
T ss_pred E
Confidence 4
No 86
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.49 E-value=2.6e-14 Score=96.01 Aligned_cols=75 Identities=23% Similarity=0.287 Sum_probs=63.0
Q ss_pred eEEEEEeCCCCCcEEEE-ecCCCcHHHHHHHHHhccCCCCCCCceEEEecC--eecC---CCCCCCCCCccccCCCCCCE
Q 032742 10 VEITVKTIGPAPPSRLS-VSSPIKVRDLRKLIATSSANHLPIENLRLVFRG--KVLD---DTQDDDDRDDVYLQLSNGDS 83 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~-v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~G--k~L~---D~~t~d~~~L~~~~I~dG~t 83 (135)
|+|.||+.+|+ ..++ +++++||.+||++|++ ++|+|+++|||+|.+ |.|. ++.+ |.+|||.+|++
T Consensus 1 m~i~vr~~~G~--~~v~~l~~~~Tv~~Lk~~I~~--~~gi~~~~qrL~~~~p~k~l~l~~~~~t-----L~~~gl~~g~~ 71 (86)
T 2kzr_A 1 WRVRCKAKGGT--HLLQGLSSRTRLRELQGQIAA--ITGIAPGSQRILVGYPPECLDLSDRDIT-----LGDLPIQSGDM 71 (86)
T ss_dssp CCEEEEETTEE--EEECSCCTTCBHHHHHHHHHH--HTCCCTTTCCCEESSCCCCCCCCCSSCB-----TTTSSCCTTCE
T ss_pred CEEEEEcCCCC--EEeeecCCCCCHHHHHHHHHH--HhCCCccceEEEeCCCCcccccCCCCCC-----HHHcCCCCCCE
Confidence 68999999995 4577 9999999999999999 999999999999874 7774 3445 99999999999
Q ss_pred EEEEecCCCC
Q 032742 84 VIAAVKPKPP 93 (135)
Q Consensus 84 Ilv~~~p~~~ 93 (135)
|+|......+
T Consensus 72 l~v~~~~~~~ 81 (86)
T 2kzr_A 72 LIVEEDQTRP 81 (86)
T ss_dssp EECCCCSCSC
T ss_pred EEEEeCCCCc
Confidence 9776654433
No 87
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.37 E-value=4.4e-14 Score=108.77 Aligned_cols=66 Identities=18% Similarity=0.232 Sum_probs=0.0
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEEe
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAAV 88 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv~~ 88 (135)
|+|+||++.+.. +.++|++++||++||++|++ ..|+|+++|||||.|+.|+|+.+ |+ +|+|| |++.
T Consensus 1 MqI~VKtL~Gkt-itLeV~~sdTV~~LK~kI~~--keGIP~~qQRLIf~GK~LeD~~T-----Ls-----~~STLhLvlR 67 (189)
T 2xzm_9 1 MQVQVKTLEGET-KIYTLEQGTSVLDLKSQISQ--DMGFEIDMMTLVNNGFIAPNTEL-----VT-----DDVTYYLSLK 67 (189)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCE-EEEEECCcChHHHHHHHHHH--HhCcChhHEEEEecCeECCCCCc-----cc-----CCCEEEEEEe
Confidence 789999998865 88999999999999999999 99999999999999999999888 76 89999 5543
No 88
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.36 E-value=2.7e-12 Score=88.28 Aligned_cols=74 Identities=14% Similarity=0.344 Sum_probs=67.1
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-
Q 032742 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV- 84 (135)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI- 84 (135)
.++.|+|+|++..+.. +.+.|.+++++..|++++++ +.++++++|||+|.|+.|.++.| +.+|++++|++|
T Consensus 4 ~~~~i~ikVk~~~g~~-i~~~v~~~t~l~kl~~~y~~--~~gi~~~~~rf~FdG~~l~~~~T-----p~dl~medgD~Id 75 (94)
T 2io1_B 4 MNDHINLKVAGQDGSV-VQFKIKRHTPLSKLMKAYCE--RQGLSMRQIRFRFDGQPINETDT-----PAQLEMEDEDTID 75 (94)
T ss_dssp --CEEEEEEECTTSCE-EEEEEETTSCTHHHHHHHHH--HHTCCGGGEEEEETTEECCTTCC-----TTTTTCCTTCEEE
T ss_pred CCCeEEEEEECCCCCE-EEEEECCCCHHHHHHHHHHH--HhCCCcccEEEEECCEEcCCCCC-----HHHcCCCCCCEEE
Confidence 4567999999988864 88999999999999999999 99999999999999999999999 999999999999
Q ss_pred EEE
Q 032742 85 IAA 87 (135)
Q Consensus 85 lv~ 87 (135)
++.
T Consensus 76 v~~ 78 (94)
T 2io1_B 76 VFQ 78 (94)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 89
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.31 E-value=2.3e-11 Score=83.13 Aligned_cols=76 Identities=14% Similarity=0.329 Sum_probs=61.5
Q ss_pred CCceEEEEEeC--CCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCe------e-c-CCCCCCCCCCcccc
Q 032742 7 SESVEITVKTI--GPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGK------V-L-DDTQDDDDRDDVYL 76 (135)
Q Consensus 7 ~~~m~I~VKt~--~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk------~-L-~D~~t~d~~~L~~~ 76 (135)
+.+++|+|++. .....+...++.++||++||.+|+. .+|+|+..|||.|.+. . | +|. .+|.+|
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~--~~gip~~~q~L~~~~~~~~~~~~~L~~d~-----~~L~~y 79 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSR--LLKVPVSELLLSYESSKMPGREIELENDL-----QPLQFY 79 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHT--TTTCCTTTCEEEEECTTSCSCEEECCCSS-----SBSGGG
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHH--HHCCChhHeEEEEEcCCCCceeeccCCCc-----ccHhhc
Confidence 56799999974 3334478899999999999999999 9999999999999842 2 3 333 459999
Q ss_pred CCCCCCEEEEEec
Q 032742 77 QLSNGDSVIAAVK 89 (135)
Q Consensus 77 ~I~dG~tIlv~~~ 89 (135)
++.+|++|+|...
T Consensus 80 ~i~~G~~I~V~d~ 92 (97)
T 1wjn_A 80 SVENGDCLLVRWS 92 (97)
T ss_dssp TCCTTCEEEEECC
T ss_pred CCCCCCEEEEEec
Confidence 9999999976653
No 90
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.31 E-value=1.1e-11 Score=84.90 Aligned_cols=74 Identities=14% Similarity=0.326 Sum_probs=67.3
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-l 85 (135)
+..|+|+|++..+.. +.+.|.++++++.|++++++ +.|+++++|||+|.|+.|.++.| ..+|++++|++| +
T Consensus 3 ~~~i~ikVk~~~g~~-v~~~vk~~t~l~kl~~~y~~--~~gi~~~~~rf~FdG~~l~~~~T-----p~dl~medgD~Idv 74 (91)
T 2io0_B 3 NDHINLKVAGQDGSV-VQFKIKRHTPLSKLMKAYCE--RQGLSMRQIRFRFDGQPINETDT-----PAQLEMEDEDTIDV 74 (91)
T ss_dssp -CEEEEEEECTTSCE-EEEEEETTSCTHHHHHHHHH--HTTCCSTTEEEEETTEECCTTCC-----TTTTTCCTTEEEEE
T ss_pred CCeEEEEEECCCCCE-EEEEECCCChHHHHHHHHHH--HhCCCcccEEEEECCEEcCCCCC-----HHHcCCCCCCEEEE
Confidence 467999999988864 88999999999999999999 99999999999999999999999 999999999999 5
Q ss_pred EEe
Q 032742 86 AAV 88 (135)
Q Consensus 86 v~~ 88 (135)
+..
T Consensus 75 ~~~ 77 (91)
T 2io0_B 75 FQQ 77 (91)
T ss_dssp EEC
T ss_pred EEe
Confidence 543
No 91
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.28 E-value=1.9e-11 Score=81.35 Aligned_cols=75 Identities=20% Similarity=0.170 Sum_probs=68.0
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032742 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (135)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIl 85 (135)
++..|+|+|++..++..+.+.|.+++++..|++++++ +.|+++++|||+|.|+.|.++.| ..+|++++|++|-
T Consensus 4 ~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~--~~gi~~~~~rf~fdG~~l~~~~T-----p~~l~medgD~Id 76 (79)
T 3a4r_A 4 GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEE--AMGLSGHKLSFFFDGTKLSGKEL-----PADLGLESGDLIE 76 (79)
T ss_dssp CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHH--HHTCTTCCCEEEETTEECCSCCC-----HHHHTCCTTCEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHH--HhCCCcccEEEEECCEEcCCCCC-----HHHcCCCCCCEEE
Confidence 4567999999988863378999999999999999999 99999999999999999999999 9999999999995
Q ss_pred EE
Q 032742 86 AA 87 (135)
Q Consensus 86 v~ 87 (135)
|.
T Consensus 77 v~ 78 (79)
T 3a4r_A 77 VW 78 (79)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 92
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.28 E-value=1.3e-11 Score=80.54 Aligned_cols=69 Identities=14% Similarity=0.319 Sum_probs=64.2
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
|+|+|++..|.. +.+.|.++++++.|++++++ +.|+++++||++|.|+.|.++.| ..++++++|++|-|
T Consensus 2 i~lkV~~~~g~~-v~~~v~~~t~l~kl~~~y~~--~~gi~~~~~rf~fdG~~l~~~~T-----p~~l~medgD~Idv 70 (72)
T 1wm3_A 2 INLKVAGQDGSV-VQFKIKRHTPLSKLMKAYCE--RQGLSMRQIRFRFDGQPINETDT-----PAQLEMEDEDTIDV 70 (72)
T ss_dssp EEEEEECTTSCE-EEEEECTTSCTHHHHHHHHH--HHTCCTTTCEEEETTEECCTTCC-----TTTTTCCTTEEEEE
T ss_pred EEEEEECCCCCE-EEEEECCCChHHHHHHHHHH--HhCCCcceEEEEECCEEcCCCCC-----HHHcCCCCCCEEEE
Confidence 789999988864 88999999999999999999 99999999999999999999999 99999999999933
No 93
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.22 E-value=4.3e-11 Score=81.97 Aligned_cols=72 Identities=14% Similarity=0.322 Sum_probs=66.3
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
+..|+|+|++..+.. +.+.|.+++++..|++++++ +.|+++++|||+|.|+.|.++.| ..+|++.+|++|-|
T Consensus 15 ~~~i~ikV~~~~g~~-i~~~v~~~t~l~kl~~~y~~--~~gi~~~~~rf~fdG~~l~~~~T-----p~dl~medgD~Idv 86 (93)
T 2d07_B 15 NDHINLKVAGQDGSV-VQFKIKRHTPLSKLMKAYCE--RQGLSMRQIRFRFDGQPINETDT-----PAQLEMEDEDTIDV 86 (93)
T ss_dssp CCEEEEEEECTTSCE-EEEEEETTSCHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTCC-----TTTTTCCTTEEEEE
T ss_pred CCeEEEEEECCCCCE-EEEEEccCCHHHHHHHHHHH--HhCCCccceEEEECCEEcCCCCC-----HHHcCCCCCCEEEE
Confidence 467999999988854 78999999999999999999 99999999999999999999999 99999999999933
No 94
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.17 E-value=5.7e-11 Score=83.25 Aligned_cols=73 Identities=14% Similarity=0.307 Sum_probs=66.9
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
+..|+|+|++..+.. +.+.|.+++++..|++++++ +.++++++|||+|.|+.|.++.| ..+|++++|++|-|
T Consensus 22 ~~~I~IkVk~~~g~~-i~~kVk~~t~l~kL~~~y~e--k~gi~~~~~rf~FdG~~l~~~~T-----p~dl~medgD~Idv 93 (104)
T 1wz0_A 22 NDHINLKVAGQDGSV-VQFKIKRHTPLSKLMKAYCE--RQGLSMRQIRFRFDGQPINETDT-----PAQLEMEDEDTIDV 93 (104)
T ss_dssp SCCEEEEEECSSSCE-EEEEECTTSCHHHHHHHHHH--HHTCCTTTSCEESSSSBCCTTSC-----TTTTTCCTTEEEEE
T ss_pred CCeEEEEEECCCCCE-EEEEEcCCChHHHHHHHHHH--HhCCCcceEEEEECCEEcCCCCC-----HHHcCCCCCCEEEE
Confidence 457999999988854 78999999999999999999 99999999999999999999999 99999999999944
Q ss_pred E
Q 032742 87 A 87 (135)
Q Consensus 87 ~ 87 (135)
.
T Consensus 94 ~ 94 (104)
T 1wz0_A 94 F 94 (104)
T ss_dssp C
T ss_pred E
Confidence 3
No 95
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.15 E-value=5e-11 Score=84.41 Aligned_cols=74 Identities=16% Similarity=0.264 Sum_probs=67.6
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-l 85 (135)
+..|+|+|++..+.. +.+.|.+++++..|++++++ +.++++++|||+|.|+.|.++.| ..+|++++|++| +
T Consensus 24 ~~~I~IkVk~~~g~~-i~fkVk~~t~l~kL~~ay~e--k~gi~~~~~rfiFdG~~L~~~~T-----p~dl~mEDgD~Idv 95 (110)
T 2k8h_A 24 TALVAVKVVNADGAE-MFFRIKSRTALKKLIDTYCK--KQGISRNSVRFLFDGTPIDETKT-----PEELGMEDDDVIDA 95 (110)
T ss_dssp CCCEEEEEEETTSCC-EEEEECTTSSHHHHHHHHHH--HHTCCSSSCEEESSSCBCCSSSH-----HHHHHCSSEEEEEE
T ss_pred CCeEEEEEECCCCCE-EEEEECCCChHHHHHHHHHH--HhCCCcccEEEEECCEEcCCCCC-----HHHcCCCCCCEEEE
Confidence 346999999988865 88999999999999999999 99999999999999999999999 999999999999 4
Q ss_pred EEe
Q 032742 86 AAV 88 (135)
Q Consensus 86 v~~ 88 (135)
+..
T Consensus 96 ~~~ 98 (110)
T 2k8h_A 96 MVE 98 (110)
T ss_dssp ECC
T ss_pred EEc
Confidence 443
No 96
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.12 E-value=2.4e-10 Score=80.45 Aligned_cols=71 Identities=17% Similarity=0.321 Sum_probs=64.8
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
+..|+|+|++ .+.. +.+.|..++++..|++++++ +.|+++++|||+|.|+.|.++.| ..+|++++|++|-|
T Consensus 29 ~~~I~IkV~~-~g~~-i~fkIk~tt~l~kL~~ay~e--k~gi~~~~~rF~FdG~rl~~~~T-----p~dl~medgD~Idv 99 (106)
T 2eke_C 29 ETHINLKVSD-GSSE-IFFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQT-----PEDLDMEDNDIIEA 99 (106)
T ss_dssp CSEEEEEEEC-SSCE-EEEEEETTSCTHHHHHHHHH--HHTCCGGGEEEEETTEECCTTCC-----TTTTTCCTTEEEEE
T ss_pred CCeEEEEEec-CCcE-EEEEeCCCCHHHHHHHHHHH--HhCCCcccEEEEECCeEcCCCCC-----HHHcCCCCCCEEEE
Confidence 4569999999 7754 78999999999999999999 99999999999999999999999 99999999999933
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.89 E-value=8e-09 Score=73.72 Aligned_cols=73 Identities=16% Similarity=0.358 Sum_probs=66.0
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-l 85 (135)
+..|+|+|++..+.. +.+.|..++++..|+..+++ +.|++++.+|++|.|+.|.++.| ..++++.+|++| +
T Consensus 38 ~~~I~LKV~~qdg~e-v~fkIk~tt~L~KLm~aY~e--r~Gl~~~~irFlFDG~rI~~~~T-----P~dL~MEDgD~IdV 109 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSE-IHFKVKMTTHLKKLKESYCQ--RQGVPMNSLRFLFEGQRIADNHT-----PKELGMEEEDVIEV 109 (115)
T ss_dssp -CEEEEEEECTTSCE-EEEEEETTSCTHHHHHHHHH--HHTCCTTSEEEEETTEECCTTCC-----TTTTTCCTTCEEEE
T ss_pred CCeEEEEEEcCCCCE-EEEEEccCChHHHHHHHHHH--HhCCChhhEEEEECCeECCCCCC-----HHHcCCCCCCEEEE
Confidence 467999999988765 77999999999999999999 99999999999999999999999 999999999999 4
Q ss_pred EE
Q 032742 86 AA 87 (135)
Q Consensus 86 v~ 87 (135)
+.
T Consensus 110 ~~ 111 (115)
T 3kyd_D 110 YQ 111 (115)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 98
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.67 E-value=8e-09 Score=68.88 Aligned_cols=73 Identities=14% Similarity=0.197 Sum_probs=57.4
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCee---cCCCCCCCCCCccccCCCCCCEE
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKV---LDDTQDDDDRDDVYLQLSNGDSV 84 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~---L~D~~t~d~~~L~~~~I~dG~tI 84 (135)
++|.|.||+..|. ..|++++++|+.+|+++|++ .++++++.|.+.+.-.. |. ...+.+++++||+.||+|
T Consensus 3 ~~m~lRvrs~~G~--~Ri~v~~~~t~~~L~~~I~~--~~~i~~~~~~l~~~~~p~~~l~---~~~~~~l~~lgl~hGd~l 75 (80)
T 2pjh_A 3 ESIIIRVQSPDGV--KRITATKRETAATFLKKVAK--EFGFQNNGFSVYINRNKTGEIT---ASSSKSLHLLKIKHGDLL 75 (80)
T ss_dssp CCCCCEEECSSEE--EECCCCSSCCHHHHHHHHHH--HTCCCTTTCCCCCSCCGGGGSS---SCCCCTTTTTCCCTTCCE
T ss_pred CcEEEEEECCCCC--EEEEcCCcChHHHHHHHHHH--HcCCCCCcceEEecCCCCCccc---CCCCCCHHHcCCCCCCEE
Confidence 5688999999885 57899999999999999999 99999988887544332 21 113345999999999999
Q ss_pred EEE
Q 032742 85 IAA 87 (135)
Q Consensus 85 lv~ 87 (135)
++.
T Consensus 76 ~l~ 78 (80)
T 2pjh_A 76 FLF 78 (80)
T ss_dssp EC-
T ss_pred EEe
Confidence 763
No 99
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.57 E-value=1.8e-07 Score=72.38 Aligned_cols=74 Identities=15% Similarity=0.298 Sum_probs=64.7
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-l 85 (135)
+.-|+|+|+. .+.. ..+.|..++++..|++..++ +.|++++++|++|.|+.|.+++| ..++++.+||+| +
T Consensus 27 ~~~I~LkV~~-~g~~-v~fkIk~~t~l~kL~~ay~e--r~Gi~~~~~RF~FdG~rI~~~~T-----P~dL~MEdgD~Idv 97 (200)
T 3pge_A 27 ETHINLKVSD-GSSE-IFFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQT-----PEDLDMEDNDIIEA 97 (200)
T ss_dssp CCCEEEEEEC-SSCE-EEEEECTTSCTHHHHHHHHH--HHSSCGGGEEEEETTEECCTTCC-----TTTTTCCTTEEEEE
T ss_pred CCeEEEEEec-CCCE-EEEEEecCCHHHHHHHHHHH--HhCCChhhEEEEECCEEcCCCCC-----HHHcCCCCCCEEEE
Confidence 3458899974 5543 78999999999999999999 99999999999999999999999 999999999999 5
Q ss_pred EEec
Q 032742 86 AAVK 89 (135)
Q Consensus 86 v~~~ 89 (135)
+...
T Consensus 98 ~~~q 101 (200)
T 3pge_A 98 HREQ 101 (200)
T ss_dssp EECC
T ss_pred Eecc
Confidence 5443
No 100
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.46 E-value=2.9e-07 Score=71.23 Aligned_cols=73 Identities=15% Similarity=0.278 Sum_probs=64.0
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
++.|+|+|+. .+.. +.+.|..++++..|++..++ +.|++++.+|++|.|+.|.+++| ..++++.+||+|-|
T Consensus 55 ~e~InLKVk~-dG~e-V~FKIKrtTpL~KLmeAYcE--RqGL~~~sIRFLFDGqRI~~ddT-----PeDLdMEDGDtIDV 125 (207)
T 3tix_A 55 ETHINLKVSD-GSSE-IFFKIKKTTPLRRLMEAFAK--RQGKEMDSLTFLYDGIEIQADQT-----PEDLDMEDNDIIEA 125 (207)
T ss_dssp CCEEEEEEEC-SSCE-EEEEEETTSCTHHHHHHHHH--HTTCCGGGSCEEETTEECCSSCC-----TTTTTCCTTEEEEE
T ss_pred CCcEEEEEec-CCCE-EEEEEccCChHHHHHHHHHH--HhCCCcccEEEEECCeecCCCCC-----HHHcCCCCCCEEEE
Confidence 3468888874 5543 78999999999999999999 99999999999999999999999 99999999999944
Q ss_pred Ee
Q 032742 87 AV 88 (135)
Q Consensus 87 ~~ 88 (135)
..
T Consensus 126 ~l 127 (207)
T 3tix_A 126 HR 127 (207)
T ss_dssp CC
T ss_pred EE
Confidence 43
No 101
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.45 E-value=2.5e-07 Score=63.82 Aligned_cols=52 Identities=15% Similarity=0.239 Sum_probs=47.2
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecC
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLD 63 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~ 63 (135)
.-|.|-+......+.+.+.++.||..||++|++ ++|||+++|+|+|.|+.+.
T Consensus 13 kvvHVf~~~~a~~h~v~I~~~etv~~~ke~V~e--qTgIp~~~Q~LL~eg~~l~ 64 (94)
T 4efo_A 13 MVIHVFSLQQMTAHKIYIHSYNTATIFHELVYK--QTKIISSNQELIYEGRRLV 64 (94)
T ss_dssp EEEEEEETTTTEEEEEEEETTCBHHHHHHHHHH--HHCCCGGGEEEEETTEEEC
T ss_pred eeEEEEEcccceEEEEEeccchHHHHHHHHHHH--HhCCCHHHHHHHhCCCccc
Confidence 567788888877788999999999999999999 9999999999999998875
No 102
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.43 E-value=1.6e-06 Score=58.08 Aligned_cols=71 Identities=24% Similarity=0.381 Sum_probs=65.2
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCC-ceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIE-NLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~-~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-l 85 (135)
+-|++.+++.+... +.+.|+++++|.+|-+.... +.+|+++ ..||.|-|..|..+.+ +.+|.+.+||-| +
T Consensus 8 ~~~~~~~~~~~~~d-l~f~I~~~t~v~kLi~ayc~--~~~I~~~~~IrllFDGdRLdp~~t-----p~DlemeD~D~IDv 79 (82)
T 3goe_A 8 KLITLLLRSSKSED-LRLSIPVDFTVKDLIKRYCT--EVKISFHERIRLEFEGEWLDPNDQ-----VQSTELEDEDQVSV 79 (82)
T ss_dssp CEEEEEEEESSSCC-EEEEEETTSBHHHHHHHHHH--HHTCCCCTTCEEEETTEECCTTSB-----GGGSSCCTTCEEEE
T ss_pred HHHHHhhhccCCCC-eEEEecCCCCHHHHHHHHHH--HcCCCcCceEEEEEcCcccCccCC-----hhhhCCcCCceeee
Confidence 46889999988876 89999999999999998887 9999999 8999999999999999 999999999999 5
Q ss_pred E
Q 032742 86 A 86 (135)
Q Consensus 86 v 86 (135)
+
T Consensus 80 m 80 (82)
T 3goe_A 80 V 80 (82)
T ss_dssp E
T ss_pred e
Confidence 4
No 103
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.39 E-value=1.8e-06 Score=59.64 Aligned_cols=74 Identities=19% Similarity=0.223 Sum_probs=66.2
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032742 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (135)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIl 85 (135)
+++.|.|+|+...+...+.+.|..++++..|....++ +.+++++..|++|.|..|..+.| ..++++++||+|-
T Consensus 22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~--~~g~~~~~vrF~FDG~rI~~~~T-----P~dLdMEDgD~ID 94 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEE--AMGLSGRKLSFFFDGTKLSGREL-----PADLGMESGDLIE 94 (97)
T ss_dssp SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHH--HTTCSSSCCEEEETTEECCSCSC-----HHHHTCCTTEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHH--HHCCCcccEEEEECCEEcCCCCC-----HHHcCCCCCCEEE
Confidence 4567999999887754477999999999999999998 99999999999999999999988 9999999999994
Q ss_pred E
Q 032742 86 A 86 (135)
Q Consensus 86 v 86 (135)
|
T Consensus 95 v 95 (97)
T 2jxx_A 95 V 95 (97)
T ss_dssp E
T ss_pred E
Confidence 3
No 104
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.19 E-value=2e-07 Score=73.05 Aligned_cols=72 Identities=15% Similarity=0.297 Sum_probs=0.0
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-l 85 (135)
++.|+|+| +..+.. ..+.|..++.+..|++..++ +.|++++.+|++|.|+.+.+++| ..++++++||+| +
T Consensus 19 ~e~InLKV-~qdGse-V~FKIKrtTpL~KLM~AYcE--RqGLs~~siRFLFDGqRI~dddT-----PadL~MEDGDtIDV 89 (227)
T 3v7o_A 19 ETHINLKV-SDGSSE-IFFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQT-----PEDLDMEDNDIIEA 89 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEEE-eCCCCE-EEEEEccCChHHHHHHHHHH--HhCCCccceEEEECCEecCCCCC-----HHHcCCCCCCEEEE
Confidence 45688888 655544 67899999999999999998 99999999999999999999999 999999999999 5
Q ss_pred EE
Q 032742 86 AA 87 (135)
Q Consensus 86 v~ 87 (135)
+.
T Consensus 90 ~l 91 (227)
T 3v7o_A 90 HR 91 (227)
T ss_dssp --
T ss_pred Ee
Confidence 44
No 105
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.99 E-value=1.7e-05 Score=61.08 Aligned_cols=72 Identities=15% Similarity=0.308 Sum_probs=63.3
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-l 85 (135)
++.|.|+|++ .++. +.+.+..++.+.-|++..++ +.|++++++|++|.|+.+.++++ ..++.+.++++| +
T Consensus 19 ~~~i~ikv~~-~~~~-v~~~i~~~~~l~kl~~~y~~--~~g~~~~~~~f~fdG~~i~~~~T-----pk~L~~ed~d~I~~ 89 (209)
T 3uf8_A 19 ETHINLKVSD-GSSE-IFFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQT-----PEDLDMEDNDIIEA 89 (209)
T ss_dssp CSEEEEEEEC-SSCE-EEEEEETTSCTHHHHHHHHH--HHTCCGGGCEEEETTEECCTTCC-----TTTTTCCTTEEEEE
T ss_pred CCcEEEEEEc-CCCE-EEEEEeeCCHHHHHHHHHHH--hhCCChheEEEEECCEeccCCCC-----hHHhhhcccccchh
Confidence 5678999987 4433 67899999999999999999 99999999999999999999888 889999999999 4
Q ss_pred EE
Q 032742 86 AA 87 (135)
Q Consensus 86 v~ 87 (135)
+.
T Consensus 90 ~~ 91 (209)
T 3uf8_A 90 HR 91 (209)
T ss_dssp EC
T ss_pred hc
Confidence 43
No 106
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.84 E-value=8.1e-05 Score=51.32 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=62.6
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-l 85 (135)
+..|.|+|+. .+.. ..+.+-.++-..-|....+. +.|+++++.|++|.|..+..+.| -.++++.+||+| .
T Consensus 19 ~~~IniKV~~-~g~e-v~FkIK~tt~l~KL~~aYc~--r~gv~~~sirFlfDG~rI~~~~T-----P~~L~meD~DiID~ 89 (95)
T 2l76_A 19 PRLFPLKIRC-RADL-VRLPLRMSEPLQSVVDHMAT--HLGVSPSRILLLFGETELSPTAT-----PRTLKLGVADIIDC 89 (95)
T ss_dssp CCCEEEEEEC-SSSE-EEEEECSSSCTHHHHHHHHH--HHTSCGGGEEEEETTEECCTTSC-----HHHHTCCSSCEEEE
T ss_pred CCeEEEEEEc-CCcE-EEEEEecCChHHHHHHHHHh--hcCCChhhEEEEECCcCCCCCCC-----HhHcCCCCCCEEEE
Confidence 3458999995 4433 67899999999999999988 99999999999999999999999 999999999999 4
Q ss_pred EE
Q 032742 86 AA 87 (135)
Q Consensus 86 v~ 87 (135)
+.
T Consensus 90 ~~ 91 (95)
T 2l76_A 90 VV 91 (95)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 107
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.81 E-value=2.7e-06 Score=70.90 Aligned_cols=72 Identities=15% Similarity=0.308 Sum_probs=0.0
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-l 85 (135)
+..|+|+|++ .+.. ..+.|..++++..|++..++ +.|++++.+|++|.|+.+.+++| ..++++++||+| +
T Consensus 19 ~~~I~LKV~~-~g~~-v~FkIk~~t~l~kLm~aY~~--r~G~~~~~~rFlFdG~rI~~~~T-----P~~L~MEDgD~Idv 89 (360)
T 3ix6_A 19 ETHINLKVSD-GSSE-IFFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQT-----PEDLDMEDNDIIEA 89 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEEEec-CCcE-EEEEEecCChHHHHHHHHHH--HhCCCcceEEEEECCeECCCCCC-----hHHcCCCccchhhh
Confidence 4568888887 4433 67899999999999999988 99999999999999999999999 999999999999 5
Q ss_pred EE
Q 032742 86 AA 87 (135)
Q Consensus 86 v~ 87 (135)
+.
T Consensus 90 ~~ 91 (360)
T 3ix6_A 90 HR 91 (360)
T ss_dssp --
T ss_pred hh
Confidence 54
No 108
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.63 E-value=7.6e-06 Score=67.65 Aligned_cols=72 Identities=15% Similarity=0.307 Sum_probs=0.0
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I 85 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-l 85 (135)
++.|.|+|++ .+.. ..+.|..++++..|++..++ +.|+++.++|++|.|+.+.+++| ..++++++|++| +
T Consensus 28 ~~~i~lkv~~-~~~~-~~~~i~~~~~~~~l~~~y~~--~~g~~~~~~~f~f~G~~i~~~~T-----p~~l~med~d~i~~ 98 (389)
T 4da1_A 28 ETHINLKVSD-GSSE-IFFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQA-----PEDLDMEDNDIIEA 98 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEEec-CCcE-EEEEECCCChHHHHHHHHHH--HhCCCcceEEEEECCEEcCCCCC-----HHHcCCCCCCEeee
Confidence 3457888877 4433 67899999999999999999 99999999999999999999999 999999999999 4
Q ss_pred EE
Q 032742 86 AA 87 (135)
Q Consensus 86 v~ 87 (135)
+.
T Consensus 99 ~~ 100 (389)
T 4da1_A 99 HR 100 (389)
T ss_dssp --
T ss_pred ee
Confidence 43
No 109
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.22 E-value=0.00045 Score=46.17 Aligned_cols=69 Identities=19% Similarity=0.225 Sum_probs=55.9
Q ss_pred ceEEEEEe--CCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC-----CceEEEecCeecCCCCCCCCCCccccCCCCC
Q 032742 9 SVEITVKT--IGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI-----ENLRLVFRGKVLDDTQDDDDRDDVYLQLSNG 81 (135)
Q Consensus 9 ~m~I~VKt--~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~-----~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG 81 (135)
.|.|+|.. -.++. +.+.+|...||.+|.+.+.+ ..+++. -..|+.-+|..|.++.. |.+|+|++|
T Consensus 4 yI~ITidl~~y~~~~-~DLRIP~~~tvK~Li~~l~e--a~~l~~~~~~~~~irv~NK~~~L~~~~~-----L~d~~ItnG 75 (81)
T 2bps_A 4 YIDITIDLKHYNGSV-FDLRLSDYHPVKKVIDIAWQ--AQSVSMPPREGHWIRVVNKDKVFSGECK-----LSDCGITNG 75 (81)
T ss_dssp EEEEEEECTTTTCCE-EEEEEETTSBTTHHHHHHHH--HSCCCSCCCTTCEEEEGGGTEEEETTSB-----TGGGTCCTT
T ss_pred EEEEEEEeeccCCce-EEEECCCchhHHHHHHHHHH--HhCCCcCCCCCCEEEEecCCEEEcCCCE-----EeeCCcCCC
Confidence 46777774 23333 78999999999999999999 555433 24889999999999999 999999999
Q ss_pred CEEE
Q 032742 82 DSVI 85 (135)
Q Consensus 82 ~tIl 85 (135)
|.|-
T Consensus 76 D~Le 79 (81)
T 2bps_A 76 DRLE 79 (81)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 9984
No 110
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.18 E-value=0.00093 Score=45.55 Aligned_cols=78 Identities=13% Similarity=0.139 Sum_probs=62.9
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (135)
.-|.|.|-..++.+ ..|.|.++.++.++=+..-+ ++|+.+++-.|-|+++.++=... +...||.+|.++ ++
T Consensus 8 ~~m~v~Vl~~n~rr-~~VKvtp~t~L~~VL~eaC~--K~gl~~~~~~Lkh~~k~lDLSlp-----fRlsgLpnnAkLELv 79 (90)
T 2al3_A 8 GGSAVSVLAPNGRR-HTVKVTPSTVLLQVLEDTCR--RQDFNPSEYDLKFQRTVLDLSLQ-----WRFANLPNNAKLEMV 79 (90)
T ss_dssp --CCEEEECTTSCE-EEECCCTTSBHHHHHHHHHH--HTTCCGGGCEEEETTEEESSSCB-----HHHHCCCSSCEEEEE
T ss_pred CccEEEEEcCCCcE-EEEEECCCCCHHHHHHHHHH--HhCCChhhCeEEeCCEeccccce-----eEecCCCCCCEEEEE
Confidence 34689999988866 88999999999997666655 89999999999999999976666 888899999999 66
Q ss_pred EecCCCC
Q 032742 87 AVKPKPP 93 (135)
Q Consensus 87 ~~~p~~~ 93 (135)
.....++
T Consensus 80 ~~s~s~~ 86 (90)
T 2al3_A 80 PVSRSRE 86 (90)
T ss_dssp CSSSCC-
T ss_pred EccCCCc
Confidence 5554443
No 111
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.16 E-value=0.0043 Score=40.70 Aligned_cols=76 Identities=11% Similarity=0.206 Sum_probs=59.4
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCE
Q 032742 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDS 83 (135)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI--~~Gk~L~D~~t~d~~~L~~~~I~dG~t 83 (135)
...+..|.||..+|.. +.-.++.+.||.+|...|.. .+.++...+|+ |-.+.+... +.+.+|.++||.++.+
T Consensus 4 ~~~~~~i~iRlpdG~r-~~~~F~~~~tl~~v~~fv~~---~~~~~~~f~L~t~fPrk~l~~~--d~~~TL~e~gL~p~a~ 77 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEF-LERRFLASNKLQIVFDFVAS---KGFPWDEYKLLSTFPRRDVTQL--DPNKSLLEVKLFPQET 77 (84)
T ss_dssp CCCEEEEEEECTTSCE-EEEEEETTSBHHHHHHHHHH---TTCCTTTEEEECSSSCCBGGGS--CTTSBTTTTTCCSEEE
T ss_pred CCCeEEEEEECCCCCE-EEEEeCCCCCHHHHHHHHHH---cCCCCCCeEEEeCCCCCCCcCC--CCCCCHHHCCCCCCCE
Confidence 3467899999999976 66789999999999999986 46778888998 556777411 1234599999999988
Q ss_pred EEEE
Q 032742 84 VIAA 87 (135)
Q Consensus 84 Ilv~ 87 (135)
|+|-
T Consensus 78 L~ve 81 (84)
T 3qx1_A 78 LFLE 81 (84)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
No 112
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.12 E-value=0.0005 Score=49.61 Aligned_cols=70 Identities=10% Similarity=0.093 Sum_probs=53.9
Q ss_pred EEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCC-------------------------------------ce
Q 032742 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIE-------------------------------------NL 53 (135)
Q Consensus 11 ~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~-------------------------------------~Q 53 (135)
.|.|+.+++.. .++.|+.+.||.+++..|.. +.|++.. +|
T Consensus 13 ~LkV~llDg~~-ktl~VD~S~~V~~lv~~Ic~--kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~ 89 (128)
T 2kc2_A 13 PLKIRMLDGTV-KTIMVDDSKTVTDMLMTICA--RIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQ 89 (128)
T ss_dssp EEEEECTTSCE-EEEEEEECSSHHHHHHHHHH--HHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCC
T ss_pred cEEEEcCCCCE-EEEEeCCCcCHHHHHHHHHH--HhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHH
Confidence 68999999976 88999999999999999988 9998744 33
Q ss_pred EEEe--cCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032742 54 RLVF--RGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (135)
Q Consensus 54 RLI~--~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (135)
||-. .+..|.++. +|.++||.+|++|++..
T Consensus 90 kL~~dd~~~WLD~sr-----tL~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 90 KLHTDDELNWLDHGR-----TLREQGVEEHETLLLRR 121 (128)
T ss_dssp SCCCSSSEEEECSSS-----CHHHHTCCTTSEEEEEE
T ss_pred HhcccCCCCcccCCC-----cHHHcCCCCCCEEEEEE
Confidence 3321 224454444 49999999999997654
No 113
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.65 E-value=0.023 Score=39.28 Aligned_cols=83 Identities=18% Similarity=0.190 Sum_probs=63.2
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEE
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI--~~Gk~L~D~~t~d~~~L~~~~I~dG~tI 84 (135)
..+..|.||..+|.. +.-.++.+.||.+|.+.|.. ..+.+.....|+ |--|.+.++ +.+.+|.+++|.+..+|
T Consensus 11 ~~~t~IqIRlpdG~r-l~~rF~~~~tl~~v~~fV~~--~~~~~~~~f~L~t~fPrk~l~~~--d~~~TL~elgL~psa~L 85 (109)
T 2dzk_A 11 STIARIQFRLPDGSS-FTNQFPSDAPLEEARQFAAQ--TVGNTYGNFSLATMFPRREFTRE--DYKRRLLDLELAPSASV 85 (109)
T ss_dssp SCCEEEEEECSSSCE-EEEEECTTSBHHHHHHHHHH--HHTTSSCSCEEECSSSCCBCCTT--TTTSBTGGGTCSSEEEE
T ss_pred CCcEEEEEECCCCCE-EEEEeCCCCCHHHHHHHHHh--ccCCCCCceEEEcCCCCcCCccc--ccCCCHHHCCCCCceEE
Confidence 457999999999975 77799999999999999987 556666677776 556667532 12356999999998888
Q ss_pred EEEecCCCCC
Q 032742 85 IAAVKPKPPP 94 (135)
Q Consensus 85 lv~~~p~~~~ 94 (135)
++....++.+
T Consensus 86 ~v~~~~~~~~ 95 (109)
T 2dzk_A 86 VLLPAGRPAT 95 (109)
T ss_dssp EEECCSSCCC
T ss_pred EEEECcCCcc
Confidence 7766555444
No 114
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.09 E-value=0.026 Score=39.91 Aligned_cols=75 Identities=16% Similarity=0.216 Sum_probs=59.2
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEE
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI--~~Gk~L~D~~t~d~~~L~~~~I~dG~tI 84 (135)
.....|.||..+|.. +.-.++.+.||.+|...|.. . +.++....|+ |-.|.|..+ +.+.+|.+++|.+..+|
T Consensus 41 ~~~t~IqIRlPdG~r-l~~rF~~~~tl~~V~~fV~~--~-~~~~~~F~L~t~fPrk~l~~~--d~~~TL~e~gL~psa~L 114 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKR-EQITLPEQAKLLALVKHVQS--K-GYPNERFELLTNFPRRKLSHL--DYDITLQEAGLCPQETV 114 (124)
T ss_dssp SCEEEEEEECTTSCE-EEEEEETTSCHHHHHHHHHH--H-HCCTTTEEEECSSSCCEETSS--CSSSCTTTTTCCSSBCC
T ss_pred CCcEEEEEECCCCCE-EEEEeCCCCCHHHHHHHHHh--c-CCCCCCeEEecCCCCcCCccC--CCCCCHHHCCCCCceEE
Confidence 457999999999976 77799999999999999987 5 7777888887 567888421 12355999999988887
Q ss_pred EEE
Q 032742 85 IAA 87 (135)
Q Consensus 85 lv~ 87 (135)
+|.
T Consensus 115 iv~ 117 (124)
T 1wj4_A 115 FVQ 117 (124)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 115
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.75 E-value=0.11 Score=36.38 Aligned_cols=81 Identities=11% Similarity=0.180 Sum_probs=52.4
Q ss_pred CCceEEEEEeCCC-CCcEEEEecCCCcHHHHHHHHHhccCCCCCC------CceEEEec----CeecCCCCCC-------
Q 032742 7 SESVEITVKTIGP-APPSRLSVSSPIKVRDLRKLIATSSANHLPI------ENLRLVFR----GKVLDDTQDD------- 68 (135)
Q Consensus 7 ~~~m~I~VKt~~~-~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~------~~QRLI~~----Gk~L~D~~t~------- 68 (135)
-.+++|++-...+ ..++.+.|-.-+||.++|++|-.+...|.|. +...|-++ |+.|.|....
T Consensus 9 ~~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~w 88 (111)
T 4e71_A 9 YAPLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRW 88 (111)
T ss_dssp CCEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---C
T ss_pred eEEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcc
Confidence 4567777765432 2335677767789999999999877777654 45677763 4556654321
Q ss_pred -CCCCccccCCCCCCEE-EEE
Q 032742 69 -DDRDDVYLQLSNGDSV-IAA 87 (135)
Q Consensus 69 -d~~~L~~~~I~dG~tI-lv~ 87 (135)
.=.+|..|+|.+|.+| ++.
T Consensus 89 krLNTL~HY~V~dgatl~l~~ 109 (111)
T 4e71_A 89 KRVNTLMHYNVRDGATLILSK 109 (111)
T ss_dssp CCCCBHHHHTCCTTCEEEEEE
T ss_pred eEecchhhcCCCCCCEEEEEe
Confidence 1156888999999999 543
No 116
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.54 E-value=0.055 Score=37.18 Aligned_cols=75 Identities=11% Similarity=0.046 Sum_probs=58.2
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEE
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI--~~Gk~L~D~~t~d~~~L~~~~I~dG~tI 84 (135)
..+.+|.||..+|.. +.-.++.+.||.+|...|.. . +..+...+|+ |-.|.|..+ .+.+|.++||.+..+|
T Consensus 21 ~~~~~IqiRlpdG~r-~~rrF~~~~tl~~v~~fv~~--~-~~~~~~f~L~t~fPrk~l~~d---~~~TL~e~gL~p~a~L 93 (109)
T 2cr5_A 21 EEVVTVALRCPNGRV-LRRRFFKSWNSQVLLDWMMK--V-GYHKSLYRLSTSFPRRALEVE---GGSSLEDIGITVDTVL 93 (109)
T ss_dssp SSEEEEEEECTTSCE-EEEEEESSSBTHHHHHHHHH--H-TCCTTTEEEECSSSCCBCCCC---SSCBHHHHTCSSCEEE
T ss_pred CCcEEEEEECCCCCE-EEEEeCCCCCHHHHHHHHHh--c-CCCCCCeEEEeCCCCcCCCCC---CCCCHHHcCCCCCeEE
Confidence 357999999999976 66789999999999999986 3 4566778886 557777521 2356999999988888
Q ss_pred EEEe
Q 032742 85 IAAV 88 (135)
Q Consensus 85 lv~~ 88 (135)
+|..
T Consensus 94 ~Ve~ 97 (109)
T 2cr5_A 94 NVEE 97 (109)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6643
No 117
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=95.44 E-value=0.12 Score=32.67 Aligned_cols=65 Identities=15% Similarity=0.364 Sum_probs=43.9
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC--CceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI--ENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~--~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (135)
|.|+|+....-....+++ ...||.+|.+.+.. ..++.. ..-.+..+|....+. +..|++||.| ++
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~--~~~l~~~l~~~~vavN~~~v~~~---------~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQE--KEGLKEWLGVCAIALNDHLIDNL---------NTPLKDGDVISLL 68 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHT--CTTTTTTTTTCEEEESSSEECCT---------TCCCCTTCEEEEE
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHH--CcCHHHHhhccEEEECCEEcCCC---------CcCCCCCCEEEEE
Confidence 567888666554334677 56899999999976 544332 446677788775432 3369999999 44
No 118
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=95.22 E-value=0.066 Score=34.55 Aligned_cols=60 Identities=22% Similarity=0.349 Sum_probs=44.7
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv~ 87 (135)
|+|+||--+. ....++++..+||++|= . ..+++++.--...+|+....+.. + +||+| ++.
T Consensus 1 M~v~Vkl~g~-~~~~~ev~~g~Tv~dLL---~---~Lgl~~~~VvV~vNG~~v~~d~~----------l-~GD~VeIv~ 61 (74)
T 2l32_A 1 MNVTVEVVGE-ETSEVAVDDDGTYADLV---R---AVDLSPHEVTVLVDGRPVPEDQS----------V-EVDRVKVLR 61 (74)
T ss_dssp CEEEEECSSS-SEEEEECSTTCSHHHHH---H---TTCCCSSCCCEECCCCCCCTTSS----------S-CCCCEEECS
T ss_pred CEEEEEEeCc-cceeEEcCCCCcHHHHH---H---HcCCCcceEEEEECCEECCHHHC----------C-CCCEEEEEE
Confidence 6788887644 33568999999999984 3 58999999878889988864332 3 49998 553
No 119
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.85 E-value=0.17 Score=36.85 Aligned_cols=82 Identities=11% Similarity=0.178 Sum_probs=53.6
Q ss_pred CCceEEEEEeCCC-----CCcEEEEecCCCcHHHHHHHHHhccCCCCCC------CceEEEe----cCee-cCCCCCCCC
Q 032742 7 SESVEITVKTIGP-----APPSRLSVSSPIKVRDLRKLIATSSANHLPI------ENLRLVF----RGKV-LDDTQDDDD 70 (135)
Q Consensus 7 ~~~m~I~VKt~~~-----~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~------~~QRLI~----~Gk~-L~D~~t~d~ 70 (135)
-.+++|+|-...+ ...+.+.|-.-+||.++|++|-.++-.+.|- +..-|-+ .|+. |.|....-.
T Consensus 22 y~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~ 101 (138)
T 2r2o_A 22 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSE 101 (138)
T ss_dssp CCEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred eEEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCccc
Confidence 3567777765422 2336677777789999999999877777654 4455655 2333 555432100
Q ss_pred --------CCccccCCCCCCEE-EEEe
Q 032742 71 --------RDDVYLQLSNGDSV-IAAV 88 (135)
Q Consensus 71 --------~~L~~~~I~dG~tI-lv~~ 88 (135)
.+|..|+|.+|.+| ++..
T Consensus 102 ~~~~wkrLNTL~HY~V~Dga~l~l~~~ 128 (138)
T 2r2o_A 102 VQGLWRRLNTLQHYKVPDGATVALVPC 128 (138)
T ss_dssp EETTEEECCBHHHHTCCTTCEEEEEEC
T ss_pred ccCCceeecchhccCCCCCCEEEEEEC
Confidence 36999999999999 5543
No 120
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=94.27 E-value=0.34 Score=34.24 Aligned_cols=81 Identities=14% Similarity=0.266 Sum_probs=52.3
Q ss_pred CCceEEEEEeCCC--CCcEEEEecCCCcHHHHHHHHHhccCCCCCC------CceEEEec-Ce----ecCCCCCC-----
Q 032742 7 SESVEITVKTIGP--APPSRLSVSSPIKVRDLRKLIATSSANHLPI------ENLRLVFR-GK----VLDDTQDD----- 68 (135)
Q Consensus 7 ~~~m~I~VKt~~~--~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~------~~QRLI~~-Gk----~L~D~~t~----- 68 (135)
-.+++|++-...+ ...+.+.|-.-+||.++|++|-.+...+.|. +...|-++ |. .|.|....
T Consensus 11 ~~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~ 90 (117)
T 4e74_A 11 YKTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIEN 90 (117)
T ss_dssp CCEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC--
T ss_pred cEEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecC
Confidence 3567777654332 2225666666789999999999877777664 45677763 32 25553321
Q ss_pred ---CCCCccccCCCCCCEE-EEE
Q 032742 69 ---DDRDDVYLQLSNGDSV-IAA 87 (135)
Q Consensus 69 ---d~~~L~~~~I~dG~tI-lv~ 87 (135)
.=.+|..|+|.+|.+| ++.
T Consensus 91 ~wkrLNTL~HY~V~dgatl~l~~ 113 (117)
T 4e74_A 91 DWKRLNTLAHYQVPDGSVVALVS 113 (117)
T ss_dssp -CCCCCBHHHHTCCTTCEEEEEE
T ss_pred cceEeccccccCCCCCCEEEEEe
Confidence 1156889999999999 654
No 121
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=94.20 E-value=0.34 Score=30.44 Aligned_cols=60 Identities=22% Similarity=0.413 Sum_probs=45.0
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032742 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (135)
Q Consensus 9 ~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (135)
+|+|+|.-..+. ..++++...|+.+|.+.+ ++++...-+.++|.....+. -|++||.| ++
T Consensus 4 ~m~i~vNg~~~~--~~~~~~~~~tv~~Ll~~l------~~~~~~v~vavN~~~v~~~~----------~L~~gD~V~ii 64 (70)
T 1ryj_A 4 GMKFTVITDDGK--KILESGAPRRIKDVLGEL------EIPIETVVVKKNGQIVIDEE----------EIFDGDIIEVI 64 (70)
T ss_dssp CEEEEEEETTEE--EEEEESSCCBHHHHHHHT------TCCTTTEEEEETTEECCTTS----------BCCTTCEEEEE
T ss_pred eEEEEEeCccCc--eeEECCCCCcHHHHHHHh------CCCCCCEEEEECCEECCCcc----------cCCCCCEEEEE
Confidence 478888775443 367888889999998754 45677777889999987443 58999999 55
No 122
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=93.70 E-value=0.22 Score=35.18 Aligned_cols=69 Identities=17% Similarity=0.227 Sum_probs=53.3
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccC-CCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCC
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSA-NHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGD 82 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~-~~ip~~~QRLI--~~Gk~L~D~~t~d~~~L~~~~I~dG~ 82 (135)
..+..|.||..+|.. +.-.++.+.||.+|...|.. . .+.......|+ |-.+.+.|. +.+|.++||.+..
T Consensus 50 ~~~t~IqIRlpdG~r-l~~rF~~~~tl~~v~~fV~~--~~~~~~~~~f~L~t~fPrk~l~d~----~~TL~eagL~psa 121 (127)
T 1s3s_G 50 EPTTNIQIRLADGGR-LVQKFNHSHRISDIRLFIVD--ARPAMAATSFVLMTTFPNKELADE----NQTLKEANLLNAV 121 (127)
T ss_dssp SCCCCEEEEETTTTE-EEEECCSSCBHHHHHHHHHH--HCSGGGTSCEEEEETTTTEECCST----TCBHHHHTCSSCE
T ss_pred CCcEEEEEECCCCCE-EEEEeCCCCCHHHHHHHHHH--hCcCCCCCCeEEecCCCCCCCCCC----CCcHHHCCCcCce
Confidence 457899999999976 67799999999999999987 3 23556667776 567778642 3459999998743
No 123
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=93.66 E-value=0.17 Score=40.94 Aligned_cols=83 Identities=18% Similarity=0.243 Sum_probs=59.3
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCC----CCCCceEEEe------cCeecCCCCCCCCCCccccCC
Q 032742 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANH----LPIENLRLVF------RGKVLDDTQDDDDRDDVYLQL 78 (135)
Q Consensus 9 ~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~----ip~~~QRLI~------~Gk~L~D~~t~d~~~L~~~~I 78 (135)
.+.++|.-. +.+-++.+++++||.++-..|.+ +.. -+++.=-|.. +|.-|+++.+ |..|++
T Consensus 3 ~~~~~~~~~--~~~~~~~f~~~~~v~~~~~~i~e--~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~-----l~~y~~ 73 (371)
T 3ivf_A 3 ALSLKISIG--NVVKTMQFEPSTMVYDACRMIRE--RIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKA-----LDYYML 73 (371)
T ss_dssp CEEEEEEET--TEEEEEEECTTCBHHHHHHHHHT--TCGGGGSSCGGGEEEEECCSSGGGCEECCTTSB-----GGGGTC
T ss_pred cEEEEEEec--ceeEEEEECCCCCHHHHHHHHHH--hcccccCCCHHHCeEeccCCCCCcCEeccCCCC-----HHHhCC
Confidence 355566655 33357999999999999999977 553 2456656655 5677888888 999999
Q ss_pred CCCCEEEEEecCCCCCccccCC
Q 032742 79 SNGDSVIAAVKPKPPPRHLRDD 100 (135)
Q Consensus 79 ~dG~tIlv~~~p~~~~~~~~~~ 100 (135)
++|+.|....++..-.+++.|+
T Consensus 74 ~~~~~l~~~~~~~~~~V~l~dg 95 (371)
T 3ivf_A 74 RNGDTMEYRKKQRPLKIRMLDG 95 (371)
T ss_dssp CTTCEEEEEECEEEEEEECTTS
T ss_pred CCCceeeccCceeEEEEECcCC
Confidence 9999997666655444444433
No 124
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=93.20 E-value=1.3 Score=31.69 Aligned_cols=79 Identities=14% Similarity=0.236 Sum_probs=51.3
Q ss_pred ceEEEEEeCC-CCCcEEEEecCCCcHHHHHHHHHhccCCCCCC------CceEEEec-C---e-ecCCCCCCCC------
Q 032742 9 SVEITVKTIG-PAPPSRLSVSSPIKVRDLRKLIATSSANHLPI------ENLRLVFR-G---K-VLDDTQDDDD------ 70 (135)
Q Consensus 9 ~m~I~VKt~~-~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~------~~QRLI~~-G---k-~L~D~~t~d~------ 70 (135)
++++++-..+ +..++.+.|=.-+||.++|++|-.+...+.|- +.+.|-++ | + .|.|....-.
T Consensus 4 ~ltl~~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~k 83 (127)
T 3h6n_A 4 PRNLNVSFQGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRK 83 (127)
T ss_dssp EEEEEEEEETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEE
T ss_pred EEEEEEEecCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCcee
Confidence 4555554322 22335666666689999999999877777654 56778773 3 3 2655332111
Q ss_pred --CCccccCCCCCCEE-EEE
Q 032742 71 --RDDVYLQLSNGDSV-IAA 87 (135)
Q Consensus 71 --~~L~~~~I~dG~tI-lv~ 87 (135)
.+|..|+|.+|.+| ++.
T Consensus 84 rLNTL~HY~V~dgatv~l~~ 103 (127)
T 3h6n_A 84 KLNTLAHYKIPEGASLAMSL 103 (127)
T ss_dssp CCCBTTTTTCCTTCEEEEEE
T ss_pred EeccccccCCCCCCEEEEEE
Confidence 56899999999999 553
No 125
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=92.55 E-value=0.36 Score=32.05 Aligned_cols=47 Identities=13% Similarity=0.268 Sum_probs=40.0
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCe
Q 032742 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGK 60 (135)
Q Consensus 9 ~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk 60 (135)
.+.|+|... .++.|.++++.+..+|.++|++ +.+++++..+|-|+-.
T Consensus 5 ~~~VKV~~~---~tvairvp~~~~y~~L~~~l~~--kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 5 AYTLKVHYK---YTVVMKTQPGLPYSQVRDMVSK--KLELRLEHTKLSYRPR 51 (83)
T ss_dssp CEEEEEESS---SEEEEEECTTCCHHHHHHHHHH--HTTCCGGGCCEEECCT
T ss_pred cEEEEEEEE---EEEEEECCCCCCHHHHHHHHHH--HhCCCcceeEEEeeCC
Confidence 366666664 4478999999999999999999 9999999999999874
No 126
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=92.54 E-value=1.1 Score=32.02 Aligned_cols=80 Identities=19% Similarity=0.200 Sum_probs=49.7
Q ss_pred CceEEEEEe---CCC-----CCcEEEEecCCCcHHHHHHHHHhccC--CCCC----CCceEEEec-C---eecCCCCCC-
Q 032742 8 ESVEITVKT---IGP-----APPSRLSVSSPIKVRDLRKLIATSSA--NHLP----IENLRLVFR-G---KVLDDTQDD- 68 (135)
Q Consensus 8 ~~m~I~VKt---~~~-----~~~~~i~v~~~~TV~dLK~~Ia~~~~--~~ip----~~~QRLI~~-G---k~L~D~~t~- 68 (135)
.++++.+-. ..+ ...+.+.|-.-+||.++|++|-.+.. .++| ++.+.|-++ | ..|.|....
T Consensus 18 ~tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS 97 (126)
T 3kuz_A 18 GTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSS 97 (126)
T ss_dssp CEEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTC
T ss_pred EEEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcc
Confidence 467777776 322 22255666667899999999987555 4554 344566552 2 234442221
Q ss_pred ----C----CCCccccCCCCCCEE-EEE
Q 032742 69 ----D----DRDDVYLQLSNGDSV-IAA 87 (135)
Q Consensus 69 ----d----~~~L~~~~I~dG~tI-lv~ 87 (135)
+ =.+|..|+|.+|.+| +++
T Consensus 98 ~~~e~~wkrLNTL~HY~V~Dgatlal~k 125 (126)
T 3kuz_A 98 VILEDGITKLNTIGHYEISNGSTIKVFK 125 (126)
T ss_dssp CBCTTSCBCCCBTGGGTCCTTCEEEEEE
T ss_pred eEecCCeeEeccccccCCCCCCEEEEee
Confidence 1 156889999999999 553
No 127
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=92.45 E-value=0.83 Score=30.24 Aligned_cols=67 Identities=21% Similarity=0.294 Sum_probs=43.9
Q ss_pred CceEEEEEeCC------CCCcEEEEecCCCcHHHHHHHHHhccCCC-C----------CCCceEEEecCeecCCCCCCCC
Q 032742 8 ESVEITVKTIG------PAPPSRLSVSSPIKVRDLRKLIATSSANH-L----------PIENLRLVFRGKVLDDTQDDDD 70 (135)
Q Consensus 8 ~~m~I~VKt~~------~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~-i----------p~~~QRLI~~Gk~L~D~~t~d~ 70 (135)
.+|+|+|+.-. +.....++++...||.+|.+.+.. ... + ......+..+|+....
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~--~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~------ 79 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKK--RHEKFKEEVFGEGYDEDADVNIAVNGRYVSW------ 79 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHH--HCGGGGGSCBCSSSCTTSSBEEEETTBCCCT------
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHh--HChhHHHHhhccccccCCcEEEEECCEECCC------
Confidence 46888888432 222256788888999999999876 431 1 1234567777777642
Q ss_pred CCccccCCCCCCEEEE
Q 032742 71 RDDVYLQLSNGDSVIA 86 (135)
Q Consensus 71 ~~L~~~~I~dG~tIlv 86 (135)
+..|++||.|.+
T Consensus 80 ----~~~L~dGDeV~i 91 (98)
T 1vjk_A 80 ----DEELKDGDVVGV 91 (98)
T ss_dssp ----TCBCCTTCEEEE
T ss_pred ----CCCCCCCCEEEE
Confidence 346999999833
No 128
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=92.24 E-value=0.66 Score=35.27 Aligned_cols=62 Identities=19% Similarity=0.193 Sum_probs=47.0
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCC-ceEEE--ecC---eecCCCCCCCCCCccccCCCCCCEEEEEecC
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANHLPIE-NLRLV--FRG---KVLDDTQDDDDRDDVYLQLSNGDSVIAAVKP 90 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~-~QRLI--~~G---k~L~D~~t~d~~~L~~~~I~dG~tIlv~~~p 90 (135)
.++.++..+||.+|++.+.+ .++++++ ..||- |.. ..|.+. +.+|.+++|.+|..|++-.+-
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~--~~~i~~~~~~RlW~~~~~~~~~~L~~~----~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRK--IFSIPDEKETRLWNKYMSNTFEPLNKP----DSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHH--HTTCCTTSCEEEEEEEETTEEEECCCT----TSBHHHHTCCTTCEEEEEECC
T ss_pred eEEEEcccchHHHHHHHHHH--HhCCCCCCceEEEEecCCCCeeecCCC----CCCHHHhCCCCCCEEEEEEec
Confidence 45778889999999999998 9999997 57773 322 234332 245999999999999886653
No 129
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=92.11 E-value=0.23 Score=33.11 Aligned_cols=63 Identities=11% Similarity=0.120 Sum_probs=41.8
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCC-CcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032742 6 ISESVEITVKTIGPAPPSRLSVSSP-IKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (135)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~i~v~~~-~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI 84 (135)
...+|+|+|. + ..++++.. .||.+|.+.+ ++++....+..+|..+..+. ..+..|++||.|
T Consensus 17 ~~~~M~I~vN---G---e~~el~~~~~Tv~dLL~~L------~~~~~~vaVavNg~iV~~~~------~~~~~L~dGD~V 78 (87)
T 1tyg_B 17 IGGRHMLQLN---G---KDVKWKKDTGTIQDLLASY------QLENKIVIVERNKEIIGKER------YHEVELCDRDVI 78 (87)
T ss_dssp -----CEEET---T---EEECCSSSCCBHHHHHHHT------TCTTSCCEEEETTEEECGGG------TTTSBCCSSSEE
T ss_pred CCcceEEEEC---C---EEEECCCCCCcHHHHHHHh------CCCCCCEEEEECCEECChhh------cCCcCCCCCCEE
Confidence 3455666553 3 25667776 8999997654 46677788889999987432 345679999999
Q ss_pred -EE
Q 032742 85 -IA 86 (135)
Q Consensus 85 -lv 86 (135)
++
T Consensus 79 ei~ 81 (87)
T 1tyg_B 79 EIV 81 (87)
T ss_dssp EEE
T ss_pred EEE
Confidence 55
No 130
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=91.78 E-value=0.69 Score=30.95 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=50.7
Q ss_pred CceEEEEEeCCCCCcEEEEecCC-CcHHHHHHHHHhccCCCCCCCceEE-EecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSP-IKVRDLRKLIATSSANHLPIENLRL-VFRGKVLDDTQDDDDRDDVYLQLSNGDSVI 85 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~-~TV~dLK~~Ia~~~~~~ip~~~QRL-I~~Gk~L~D~~t~d~~~L~~~~I~dG~tIl 85 (135)
.|-.|+.|..+.+...+|.++.. .+|.+||+.|.+ +.++-....-| ||....-+ +-. ....-|.-+++|+
T Consensus 5 ~mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~--~~kl~~~dfDL~i~na~T~e-eY~-----Dd~~lIprnssVi 76 (86)
T 2c7h_A 5 SMSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMG--REKLKAADCDLQITNAQTKE-EYT-----DDNALIPKNSSVI 76 (86)
T ss_dssp TBEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHH--HHTCCTTTEEEEEEESSSCC-EEC-----STTCEEETTCCEE
T ss_pred ceeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHH--HhCCCCCcccEEEeCCCCCC-ccC-----CCceEEecCCEEE
Confidence 57778888877777567888875 899999999998 66654445444 45433322 111 1222366677888
Q ss_pred EEecCCCC
Q 032742 86 AAVKPKPP 93 (135)
Q Consensus 86 v~~~p~~~ 93 (135)
|...|...
T Consensus 77 VrRvP~~~ 84 (86)
T 2c7h_A 77 VRRIPIGG 84 (86)
T ss_dssp EEEEECSS
T ss_pred EEeccCcc
Confidence 87766543
No 131
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=91.14 E-value=2.7 Score=29.01 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=24.9
Q ss_pred CceEEEEEeCCC-------CCcEEEEecC---CCcHHHHHHHHHh
Q 032742 8 ESVEITVKTIGP-------APPSRLSVSS---PIKVRDLRKLIAT 42 (135)
Q Consensus 8 ~~m~I~VKt~~~-------~~~~~i~v~~---~~TV~dLK~~Ia~ 42 (135)
++|+|+|+...+ .+.+.++++. .+||++|-..+.+
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~ 54 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKK 54 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTT
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHH
Confidence 569999995543 2224577773 3699999998876
No 132
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=90.94 E-value=1.2 Score=34.11 Aligned_cols=61 Identities=16% Similarity=0.125 Sum_probs=46.7
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCC-ceEEEe-c----CeecCCCCCCCCCCccccCCCCCCEEEEEecC
Q 032742 24 RLSVSSPIKVRDLRKLIATSSANHLPIE-NLRLVF-R----GKVLDDTQDDDDRDDVYLQLSNGDSVIAAVKP 90 (135)
Q Consensus 24 ~i~v~~~~TV~dLK~~Ia~~~~~~ip~~-~QRLI~-~----Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~~p 90 (135)
++.++..+||.+|++.+.. .++++++ ..||-. . ...|.|. +.+|.+++|.+|..|++-.+-
T Consensus 155 ~~~~Sk~~ti~~l~~~~~~--~~~i~~~~~~RLW~~~~~~~~~~L~~~----~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 155 SCHFSKADTIATIEKEMRK--LFNIPAERETRLWNKYMSNTYEQLSKL----DNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp EEEECTTCBHHHHHHHHHH--HTTCCTTSCEEEEECSSSSSCEECCCT----TSBTTTTTCCTTEEEEEEECC
T ss_pred EEEecccCcHHHHHHHHHH--HhCCCCCCeEEEEEecCCCCHhhhcCC----CCCHHHhCCCCCCEEEEEEec
Confidence 4567888999999999988 9999997 588853 3 2234432 245999999999999887654
No 133
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=90.91 E-value=0.15 Score=36.31 Aligned_cols=35 Identities=11% Similarity=0.174 Sum_probs=30.5
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG 59 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~G 59 (135)
.++.|.-++|+.+|+..|++ ..|+|+++|||-+--
T Consensus 58 ~~~rv~k~~~~~~~~~~va~--~lg~~~~~~RlW~~~ 92 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQ--TMGFPQDQIRLWPMQ 92 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHH--HHCCCGGGCEEEECC
T ss_pred ceEEEeccCcHHHHHHHHHH--HhCCCcccEEEEEee
Confidence 35778889999999999999 999999999996543
No 134
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=90.60 E-value=1.3 Score=29.30 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=23.9
Q ss_pred ceEEEEEeC-------CCCCcEEEEec--CCCcHHHHHHHHHh
Q 032742 9 SVEITVKTI-------GPAPPSRLSVS--SPIKVRDLRKLIAT 42 (135)
Q Consensus 9 ~m~I~VKt~-------~~~~~~~i~v~--~~~TV~dLK~~Ia~ 42 (135)
||+|+|+.. ++.....++++ ...||++|.+.+.+
T Consensus 1 mM~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~ 43 (99)
T 2qjl_A 1 MVNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVS 43 (99)
T ss_dssp CEEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHH
T ss_pred CcEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHH
Confidence 477777732 23443556776 67899999999976
No 135
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=88.78 E-value=2.1 Score=28.57 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=40.5
Q ss_pred CCCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCc-eEEEecC
Q 032742 4 GEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN-LRLVFRG 59 (135)
Q Consensus 4 ~~~~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~-QRLI~~G 59 (135)
|..+.+|+|++...+. . +.+.++++.+..+|.+++.+ .++++.++ ..+-|.-
T Consensus 1 ~~~~~~vkvK~~~~gd-i-~~~~v~~~i~~~~L~~kv~~--~~~~~~~~~f~lky~D 53 (89)
T 1vd2_A 1 GPLGSQVRVKAYYRGD-I-MITHFEPSISFEGLCNEVRD--MCSFDNEQLFTMKWID 53 (89)
T ss_dssp CCCSSCEEEEEESSSC-E-EEEEECTTCCHHHHHHHHHH--HTTCCSSCCEEEEECC
T ss_pred CCCCCeEEEEEEeCCe-E-EEEECCCCCCHHHHHHHHHH--HhCCCCCCeEEEEEEC
Confidence 3455678887777544 3 68899999999999999999 89887655 7777764
No 136
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=88.76 E-value=1.9 Score=34.31 Aligned_cols=49 Identities=16% Similarity=0.275 Sum_probs=40.3
Q ss_pred EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeec
Q 032742 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVL 62 (135)
Q Consensus 12 I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L 62 (135)
+.+-.........+.+.+..|+.++++.+++ .++++++.|.|+|.+..+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~t~i~~~~q~~l~~~~~~ 361 (396)
T 4eut_A 313 IHVFSLQQMTAHKIYIHSYNTATIFHELVYK--QTKIISSNQELIYEGRRL 361 (396)
T ss_dssp EEEEETTTTEEEEEEECTTCBHHHHHHHHHH--HHCCCSTTEEEESSSSEE
T ss_pred EEEEEeccceEEEEEcCchhHHHHHHHHHHH--hcCCChhhhHHHhcCCCC
Confidence 4555555555456888999999999999999 999999999999999444
No 137
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=86.76 E-value=5.3 Score=35.37 Aligned_cols=80 Identities=13% Similarity=0.241 Sum_probs=52.7
Q ss_pred CceEEEEEeCCC--CCcEEEEecCCCcHHHHHHHHHhccCCCCC------CCceEEEec----Ce-ecCCCCCCCC----
Q 032742 8 ESVEITVKTIGP--APPSRLSVSSPIKVRDLRKLIATSSANHLP------IENLRLVFR----GK-VLDDTQDDDD---- 70 (135)
Q Consensus 8 ~~m~I~VKt~~~--~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip------~~~QRLI~~----Gk-~L~D~~t~d~---- 70 (135)
.++++.+-...+ ...+.+.|-.-+||.++|++|-.++-.+.| ++...|-++ |+ .|.|++....
T Consensus 232 ~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~ 311 (627)
T 3ig3_A 232 KTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECD 311 (627)
T ss_dssp CEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETT
T ss_pred eeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCc
Confidence 467777765442 232556676678999999999887766654 455677652 33 2444332111
Q ss_pred ----CCccccCCCCCCEE-EEE
Q 032742 71 ----RDDVYLQLSNGDSV-IAA 87 (135)
Q Consensus 71 ----~~L~~~~I~dG~tI-lv~ 87 (135)
.+|..|+|.+|.+| ++.
T Consensus 312 wkrLNTL~HY~V~Dga~v~L~p 333 (627)
T 3ig3_A 312 WKRVNSLAHYQVTDGSLVALVP 333 (627)
T ss_dssp EEECCBTTTTTCCTTCEEEEEE
T ss_pred eeEecchhhcCCCCCceEEEEe
Confidence 56899999999999 654
No 138
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.31 E-value=1.8 Score=29.15 Aligned_cols=76 Identities=13% Similarity=0.077 Sum_probs=57.0
Q ss_pred CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
..|+.+-|.....++ ..+.|+|..++.+|--.|-+ ++.+.|+.--|.---+. ++.++-+.+|.+|||++ +|+
T Consensus 8 E~TvRLvVNy~~tQK-tVvRVSP~vpL~ellp~IC~--Kcefdp~~~~Ll~d~~~--~e~LdLskSLndlgirE---Lya 79 (91)
T 2daj_A 8 EKTVRVVINFKKTQK-TIVRVSPHASLQELAPIICS--KCEFDPLHTLLLKDYQS--QEPLDLTKSLNDLGLRE---LYA 79 (91)
T ss_dssp CSCEEEEEEETTTEE-EEEEECSSSCTTTHHHHHHH--HTTCCTTSEEEESCSSC--CCBCCTTSCHHHHTCSE---EEE
T ss_pred ccEEEEEEeecCcce-eEEEeCCCCcHHHHHHHHhh--cccCChhhEEEecCCCC--Ccccchhcchhhhhhhh---hhe
Confidence 478999999988766 77899999999999999988 99999998776432221 12233346699999986 665
Q ss_pred EecC
Q 032742 87 AVKP 90 (135)
Q Consensus 87 ~~~p 90 (135)
+-..
T Consensus 80 ~d~~ 83 (91)
T 2daj_A 80 MDVN 83 (91)
T ss_dssp EECC
T ss_pred eccc
Confidence 5433
No 139
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=84.63 E-value=5.1 Score=35.57 Aligned_cols=80 Identities=13% Similarity=0.218 Sum_probs=52.2
Q ss_pred CceEEEEEeCCC-----CCcEEEEecCCCcHHHHHHHHHhccCCCCCC------CceEEEec----Ce-ecCCCCCCCC-
Q 032742 8 ESVEITVKTIGP-----APPSRLSVSSPIKVRDLRKLIATSSANHLPI------ENLRLVFR----GK-VLDDTQDDDD- 70 (135)
Q Consensus 8 ~~m~I~VKt~~~-----~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~------~~QRLI~~----Gk-~L~D~~t~d~- 70 (135)
.++++.|-...+ ...+.+.|-.-+||.++|++|-.++-.|.|- +...|-++ |+ .|.|.+....
T Consensus 256 ~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~ 335 (644)
T 3hm6_X 256 RPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEV 335 (644)
T ss_dssp CEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCE
T ss_pred eeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCcccee
Confidence 467777765422 2336677777789999999998766667654 44666652 33 3555432111
Q ss_pred -------CCccccCCCCCCEE-EEE
Q 032742 71 -------RDDVYLQLSNGDSV-IAA 87 (135)
Q Consensus 71 -------~~L~~~~I~dG~tI-lv~ 87 (135)
.+|..|+|.+|.+| ++.
T Consensus 336 ~~~wkrLNTL~HY~V~dga~v~L~p 360 (644)
T 3hm6_X 336 QGLWRRLNTLQHYKVPDGATVALVP 360 (644)
T ss_dssp ETTEEECCBTTTTTCCTTCEEEEEE
T ss_pred cCcceeecchhhcCCCCCcEEEEEe
Confidence 56999999999999 654
No 140
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=84.58 E-value=3.1 Score=25.94 Aligned_cols=51 Identities=20% Similarity=0.215 Sum_probs=33.7
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCC-----CCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANH-----LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~-----ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
..++ +...||.+|.+.+.. ... ++.....+..+|+.... +..|++||.|.+
T Consensus 19 ~~~~-~~~~tv~~ll~~L~~--~~p~~~~~l~~~~~~v~vN~~~v~~----------~~~l~~gD~V~i 74 (81)
T 1fm0_D 19 TEVA-ADFPTVEALRQHMAA--QSDRWALALEDGKLLAAVNQTLVSF----------DHPLTDGDEVAF 74 (81)
T ss_dssp EEEC-SCCSBHHHHHHHHHT--TCHHHHHHHCCTTCEEEETTEECCT----------TCBCCTTCEEEE
T ss_pred EEEc-CCCCCHHHHHHHHHH--HChhHHHHhcCCCEEEEECCEECCC----------CCCCCCCCEEEE
Confidence 3344 456899999999875 431 22344567788887642 236899999933
No 141
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=84.46 E-value=4.9 Score=25.61 Aligned_cols=52 Identities=17% Similarity=0.186 Sum_probs=35.9
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCC-C-----CC-----CceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANH-L-----PI-----ENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~-i-----p~-----~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
..++++...||++|.+.+.. ... + .. ....+..+|+.... +.-|++||.|.+
T Consensus 20 ~~~~~~~~~Tv~~ll~~L~~--~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~----------~~~l~~gDeV~i 82 (89)
T 3po0_A 20 VRVDVDGDATVGDALDALVG--AHPALESRVFGDDGELYDHINVLRNGEAAAL----------GEATAAGDELAL 82 (89)
T ss_dssp EEEECCTTCBHHHHHHHHHH--HCGGGHHHHBCTTSCBCTTSEEEETTEECCT----------TSBCCTTCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHH--HCcHHHHHHhccCCcccccEEEEECCEECCC----------CcccCCCCEEEE
Confidence 56788878999999999977 441 1 00 12567778877753 235999999933
No 142
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=83.27 E-value=4.9 Score=27.02 Aligned_cols=70 Identities=14% Similarity=0.148 Sum_probs=47.4
Q ss_pred CceEEEEEeCCCCC--cEEEEecCCCcHHHHHHHHHhc-cCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032742 8 ESVEITVKTIGPAP--PSRLSVSSPIKVRDLRKLIATS-SANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (135)
Q Consensus 8 ~~m~I~VKt~~~~~--~~~i~v~~~~TV~dLK~~Ia~~-~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI 84 (135)
++|.|.|-..-... ...++++..+||.++=++..-. ....+..+...+-..|+..+.+ ..|++||.|
T Consensus 11 ~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~d----------~~L~dGDRV 80 (97)
T 2hj1_A 11 NQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKLT----------DVLKEGDRI 80 (97)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCTT----------CBCCTTCEE
T ss_pred ceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCCC----------ccCCCCCEE
Confidence 57888888665543 2347888999999987655310 0223455567888899888633 359999999
Q ss_pred -EEE
Q 032742 85 -IAA 87 (135)
Q Consensus 85 -lv~ 87 (135)
++-
T Consensus 81 EIyr 84 (97)
T 2hj1_A 81 EIYR 84 (97)
T ss_dssp EECC
T ss_pred EEEe
Confidence 653
No 143
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=81.73 E-value=0.92 Score=38.97 Aligned_cols=34 Identities=12% Similarity=0.189 Sum_probs=30.2
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR 58 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~ 58 (135)
..+.|..++|+.+||+.|++ ..|+|+++|||-.-
T Consensus 38 ~~~rv~k~~~~~~l~~~va~--~lg~~~~~~RlW~~ 71 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQ--TMGFPQDQIRLWPM 71 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHH--HHTSCGGGEEEEEE
T ss_pred ceEEEcCcCCHHHHHHHHHH--HhCcCcccEEEEEE
Confidence 46788999999999999999 99999999999533
No 144
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=80.05 E-value=2 Score=26.67 Aligned_cols=51 Identities=12% Similarity=0.263 Sum_probs=35.4
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCce--EEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENL--RLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~Q--RLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (135)
..++++...||.+|.+.+.. ... ...+. .+..+|+....+ ..|++||.| ++
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~--~~p-~~~~v~~~v~vNg~~v~~~----------~~L~~gD~V~i~ 71 (77)
T 2q5w_D 18 EDIVLEQALTVQQFEDLLFE--RYP-QINNKKFQVAVNEEFVQKS----------DFIQPNDTVALI 71 (77)
T ss_dssp EECCCSSCEEHHHHHHHHHH--HCG-GGTTCCCEEEETTEEECTT----------SEECTTCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHH--HCc-chhcceEEEEECCEECCCC----------CCcCCCCEEEEE
Confidence 45666677899999998876 431 11334 678888887632 369999999 44
No 145
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=79.72 E-value=4.9 Score=24.42 Aligned_cols=61 Identities=16% Similarity=0.120 Sum_probs=38.0
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv~ 87 (135)
|.|+|...+|. ..+++..+|+.+|-+.+.. +++..-.-....|+..+ + ++.|++|+.| ++-
T Consensus 1 m~i~i~~p~g~---~~~~~~g~T~~dla~~i~~----~l~~~~vaa~vNg~lvd---------l-~~~L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGE---IKRLPQGATALDFAYSLHS----DLGDHCIGAKVNHKLVP---------L-SYVLNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTCC---EEEECTTCBHHHHHHHHCS----HHHHTEEEEEETTEECC---------T-TCBCCSSSBEEEEE
T ss_pred CeEEEEcCCCC---EEEcCCCCcHHHHHHHHhh----ccccceEEEEECCEEeC---------C-CcCcCCCCEEEEEE
Confidence 45677766653 4678888999999777632 12222222345777664 3 3568889988 553
No 146
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=79.21 E-value=1.2 Score=30.68 Aligned_cols=75 Identities=23% Similarity=0.256 Sum_probs=39.5
Q ss_pred ceEEEEEeCCCC-----CcEEEEecC----CCcHHHHHHHHHhccCCCCCCCceEEEec-C--e------ecCCCCCCCC
Q 032742 9 SVEITVKTIGPA-----PPSRLSVSS----PIKVRDLRKLIATSSANHLPIENLRLVFR-G--K------VLDDTQDDDD 70 (135)
Q Consensus 9 ~m~I~VKt~~~~-----~~~~i~v~~----~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~-G--k------~L~D~~t~d~ 70 (135)
+|+|+|+..++- ....++++. .+||++|=..+.+ . ++..+-+|+.. | . +|-|+..-.-
T Consensus 4 ~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~--~--~~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~ 79 (110)
T 2k9x_A 4 HNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKT--N--YVKERPDLLVDQTGQTLRPGILVLVNSCDAEV 79 (110)
T ss_dssp SSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTT--T--TCCSCHHHHBCSSSSSBCTTEEEEESSSBHHH
T ss_pred ccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHH--H--ccccchhhEecCCCcccCCCeEEEECCeeeec
Confidence 477888754442 124577773 3599999888765 3 34334444322 2 1 2322211000
Q ss_pred CCccccCCCCCCEEEEE
Q 032742 71 RDDVYLQLSNGDSVIAA 87 (135)
Q Consensus 71 ~~L~~~~I~dG~tIlv~ 87 (135)
..-.+|.|++||.|.+.
T Consensus 80 l~gldt~L~dgD~V~fi 96 (110)
T 2k9x_A 80 VGGMDYVLNDGDTVEFI 96 (110)
T ss_dssp HTSSCCCCCSSCEEEEE
T ss_pred cCCcccCCCCcCEEEEe
Confidence 01235779999998443
No 147
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=79.03 E-value=8.5 Score=26.39 Aligned_cols=76 Identities=16% Similarity=0.138 Sum_probs=52.9
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE---ecCeec--CCCCCCCCCCccccCCCC
Q 032742 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV---FRGKVL--DDTQDDDDRDDVYLQLSN 80 (135)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI---~~Gk~L--~D~~t~d~~~L~~~~I~d 80 (135)
.++.+-..|-...+.+ .++.++...|+.+++..+++ +.+..-+.+.|+ +.|... ++++. -..-.+.-
T Consensus 6 ~sD~i~~~Vy~~Dhsy-~tvr~~v~~sa~eIl~~va~--kl~~~~e~l~Lv~v~ssGEk~~lqp~d~-----si~tsL~~ 77 (104)
T 1wgy_A 6 SGEEIFCHVYITEHSY-VSVKAKVSSIAQEILKVVAE--KIQYAEEDLALVAITFSGEKHELQPNDL-----VISKSLEA 77 (104)
T ss_dssp CSSCCCEEEECSSSCE-EEECCCTTCBSHHHHHHHHH--HHTSCGGGEEEEEECSSCCCCBCCTTSB-----SSCCSSCS
T ss_pred CCCceEEEEEeccCce-EEEEEeccchHHHHHHHHHH--HhcCCccceEEEEEccCCcEeecCCcce-----EEEeeccc
Confidence 3456667777777776 78899999999999999999 888776677775 566553 33333 23334555
Q ss_pred CCEEEEEec
Q 032742 81 GDSVIAAVK 89 (135)
Q Consensus 81 G~tIlv~~~ 89 (135)
+..|+++.+
T Consensus 78 NgRLfvc~k 86 (104)
T 1wgy_A 78 SGRIYVYRK 86 (104)
T ss_dssp SCEEEEEEC
T ss_pred cceEEEeeh
Confidence 677766553
No 148
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=78.50 E-value=0.87 Score=29.42 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=38.9
Q ss_pred EEEec--CCCcHHHHHHHHHhccCCCCC-CCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032742 24 RLSVS--SPIKVRDLRKLIATSSANHLP-IENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (135)
Q Consensus 24 ~i~v~--~~~TV~dLK~~Ia~~~~~~ip-~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv~ 87 (135)
..+++ ...||.+|-+. .+++ +...-+.++|..++.+. ..+..|++||.| ++.
T Consensus 9 ~~e~~~~~~~Tl~~LL~~------l~~~~~~~vAVavNg~iVpr~~------~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 9 PSTVDGAESLNVTELLSA------LKVAQAEYVTVELNGEVLEREA------FDATTVKDGDAVEFLY 64 (78)
T ss_dssp EEECSSCSCEEHHHHHHH------HTCSCTTTCCEEETTEECCTTH------HHHCEECSSBCEEECC
T ss_pred EEEcCCCCCCcHHHHHHH------cCCCCCCcEEEEECCEECChHH------cCcccCCCCCEEEEEe
Confidence 45666 67899998654 4566 77777899999997543 456789999999 553
No 149
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=76.32 E-value=10 Score=25.70 Aligned_cols=59 Identities=12% Similarity=0.120 Sum_probs=42.7
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe-------cCeecCCCCC
Q 032742 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF-------RGKVLDDTQD 67 (135)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~-------~Gk~L~D~~t 67 (135)
..+.+-|+|-..+++. ..|.|++.+|++++=+.+++ +.++..+.-.-+| .-+.++|...
T Consensus 6 ~~~k~vvkvf~~Dgss-ksi~V~~~~Ta~dv~~~L~~--K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~ 71 (100)
T 1wgr_A 6 SGRPHVVKVYSEDGAC-RSVEVAAGATARHVCEMLVQ--RAHALSDETWGLVECHPHLALERGLEDHES 71 (100)
T ss_dssp CCSCEEEEEEETTSCE-EEEEECTTCCHHHHHHHHHC--SSSCCCCCCCCEEEEETTTTEEEEECSSSC
T ss_pred cCCCEEEEEEecCCCE-EEEEECCCCcHHHHHHHHHH--HcCCCCCCCeEEEEecCCCCcEEeccCchh
Confidence 4456788888888866 78999999999999999998 8887644422222 3355666555
No 150
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=75.54 E-value=2.5 Score=26.75 Aligned_cols=51 Identities=14% Similarity=0.100 Sum_probs=38.2
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032742 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (135)
Q Consensus 24 ~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv~ 87 (135)
..++ ...||.+|-+ ..++++...-+.++|..++.+. ..+..|++||.| ++.
T Consensus 9 ~~e~-~~~Tl~~LL~------~l~~~~~~vAV~vNg~iVpr~~------~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 9 QREV-QSASVAALMT------ELDCTGGHFAVALNYDVVPRGK------WDETPVTAGDEIEILT 60 (73)
T ss_dssp EECC-CCSBHHHHHH------HTTCCSSSCEEEESSSEECHHH------HTTCBCCTTCEEEEEC
T ss_pred EEEc-CCCcHHHHHH------HcCCCCCcEEEEECCEECChHH------cCcccCCCCCEEEEEc
Confidence 4455 6689998854 3678888888999999987432 446689999999 654
No 151
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=73.65 E-value=1.8 Score=27.40 Aligned_cols=45 Identities=24% Similarity=0.316 Sum_probs=33.4
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032742 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV 84 (135)
Q Consensus 24 ~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI 84 (135)
.++++...||.+|.+. .++++....+..+|+....+ ..|++||.|
T Consensus 24 ~~~~~~~~Tv~dLl~~------L~~~~~~v~VavNg~~v~~~----------~~L~dGD~V 68 (77)
T 1rws_A 24 EIEWREGMKVRDILRA------VGFNTESAIAKVNGKVVLED----------DEVKDGDFV 68 (77)
T ss_dssp CCCCCSSCCHHHHHHT------TTCSSCSSCEEETTEEECSS----------SCCCSSCCC
T ss_pred EEECCCCCcHHHHHHH------hCCCCcCEEEEECCEECCCC----------CCcCCCCEE
Confidence 4566777899998664 34666777788999888643 358999988
No 152
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=73.28 E-value=7 Score=27.82 Aligned_cols=63 Identities=24% Similarity=0.302 Sum_probs=40.1
Q ss_pred EEEecC----CCcHHHHHHHHHhccCCCCCCCceEEEe--cCeecCCCCCCCC--CCccccCCCCCCEEEEEec
Q 032742 24 RLSVSS----PIKVRDLRKLIATSSANHLPIENLRLVF--RGKVLDDTQDDDD--RDDVYLQLSNGDSVIAAVK 89 (135)
Q Consensus 24 ~i~v~~----~~TV~dLK~~Ia~~~~~~ip~~~QRLI~--~Gk~L~D~~t~d~--~~L~~~~I~dG~tIlv~~~ 89 (135)
.+.|+. .+|.++|-+.+.. +.|+.. ..-+.= ..+.|-|-..+|. ++|+++|+++|++|.+.-.
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~--~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~DE 79 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIRE--KYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDE 79 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHH--HHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEES
T ss_pred EEEeCcccccccCHHHHHHHHHH--hcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEcc
Confidence 467765 3799998888877 666642 333321 2233333333332 7899999999999977654
No 153
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=72.96 E-value=4.4 Score=24.64 Aligned_cols=51 Identities=12% Similarity=0.184 Sum_probs=37.0
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032742 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (135)
Q Consensus 24 ~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (135)
.++++...||.+|.+.+ ++++....+..+|....... ..+..|++||.| ++
T Consensus 9 ~~~~~~~~tv~~ll~~l------~~~~~~v~vavN~~~v~~~~------~~~~~L~~gD~v~i~ 60 (66)
T 1f0z_A 9 AMQCAAGQTVHELLEQL------DQRQAGAALAINQQIVPREQ------WAQHIVQDGDQILLF 60 (66)
T ss_dssp EECCCTTCCHHHHHHHH------TCCCSSEEEEETTEEECHHH------HTTCCCCTTEEECEE
T ss_pred EEEcCCCCcHHHHHHHc------CCCCCCEEEEECCEECCchh------cCCcCCCCCCEEEEE
Confidence 45667788999998765 34567777889998886321 224569999999 65
No 154
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=72.89 E-value=5 Score=26.47 Aligned_cols=70 Identities=17% Similarity=0.216 Sum_probs=41.5
Q ss_pred CceEEEEEeCCCCCc----EEEEecCCCcHHHHHHHHHhccCCC-CCC-----C----ce-------EEEecCeecCCCC
Q 032742 8 ESVEITVKTIGPAPP----SRLSVSSPIKVRDLRKLIATSSANH-LPI-----E----NL-------RLVFRGKVLDDTQ 66 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~----~~i~v~~~~TV~dLK~~Ia~~~~~~-ip~-----~----~Q-------RLI~~Gk~L~D~~ 66 (135)
.||+|+|+....-.. ..++++ ..||.+|.+.+.. ... +.. . .. .+..+|+......
T Consensus 2 ~mm~v~V~~fa~lr~~~g~~~~~l~-~~tv~~ll~~L~~--~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~ 78 (99)
T 2l52_A 2 HMAEVKVKLFANLREAAGTPELPLS-GEKVIDVLLSLTD--KYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE 78 (99)
T ss_dssp CCCEEEEEECTHHHHHHSSSEEEEE-CSSHHHHHHHHHH--HCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT
T ss_pred CceEEEEEEeHHHHHHhCCCeEEEe-CCcHHHHHHHHHH--HChhHHHHHhcccccccceeccccccEEEECCEEccccC
Confidence 368899985443211 134555 6899999999876 431 111 1 23 5677887664211
Q ss_pred CCCCCCccccCCCCCCEEEE
Q 032742 67 DDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 67 t~d~~~L~~~~I~dG~tIlv 86 (135)
-.+..|++||.|.+
T Consensus 79 ------~~~~~L~~gD~V~i 92 (99)
T 2l52_A 79 ------GLETLLKDSDEIGI 92 (99)
T ss_dssp ------STTSCCCTTEEEEE
T ss_pred ------CCCCCCCCCCEEEE
Confidence 22446999999833
No 155
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=71.62 E-value=17 Score=23.20 Aligned_cols=54 Identities=11% Similarity=0.097 Sum_probs=34.5
Q ss_pred EEEecCCCcHHHHHHHHHhccCCC-C-----C-------CCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 24 RLSVSSPIKVRDLRKLIATSSANH-L-----P-------IENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 24 ~i~v~~~~TV~dLK~~Ia~~~~~~-i-----p-------~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
.+++ ...||++|.+.+.. ... + . .....+..+|....... -.+.-|++||.|.+
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~--~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~------~~~~~L~~gDeV~i 86 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEA--NYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSG------GLATAIADGDSVTI 86 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHH--HSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTT------GGGCBCCTTCEEEE
T ss_pred EEec-CCCCHHHHHHHHHH--HChhHHHHHhccccCCcccCCEEEEECCEEccCcC------CCCcCCCCCCEEEE
Confidence 4664 45799999999986 431 1 1 11356777887765321 23457999999933
No 156
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=71.40 E-value=8 Score=23.31 Aligned_cols=50 Identities=8% Similarity=0.181 Sum_probs=36.4
Q ss_pred EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032742 24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA 86 (135)
Q Consensus 24 ~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (135)
.+++ ...||.+|.+.+ ++++....+..+|.....+. ..+..|++||.| ++
T Consensus 8 ~~~~-~~~tv~~ll~~l------~~~~~~v~vavN~~~v~~~~------~~~~~L~dgD~v~i~ 58 (64)
T 2cu3_A 8 PRPL-EGKTLKEVLEEM------GVELKGVAVLLNEEAFLGLE------VPDRPLRDGDVVEVV 58 (64)
T ss_dssp EECC-TTCCHHHHHHHH------TBCGGGEEEEETTEEEEGGG------CCCCCCCTTCEEEEE
T ss_pred EEEc-CCCcHHHHHHHc------CCCCCcEEEEECCEECCccc------cCCcCCCCCCEEEEE
Confidence 4556 668999998766 34567777889999886432 345579999999 55
No 157
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=70.60 E-value=6.5 Score=34.75 Aligned_cols=40 Identities=13% Similarity=0.227 Sum_probs=35.6
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCC
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDD 64 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D 64 (135)
..+.+.++.|+.+|+..|+. .++++++.|-+++.+....+
T Consensus 324 ~~~~i~~~~tl~~l~~~i~~--~T~i~~~~q~~~~~~~~~~~ 363 (676)
T 3qa8_A 324 HTYPVTENENLQNLKSWLQQ--DTGIPEEEQELLQASGLALN 363 (676)
T ss_dssp CEEECCTTCCHHHHHHHHHT--TSCCCSTTCEEESSSSCCCC
T ss_pred ceeecCCCccHHHHHHHHHH--HhCCCHHHHHHHhccCCCCC
Confidence 56889999999999999999 99999999999998766543
No 158
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=69.85 E-value=21 Score=23.61 Aligned_cols=47 Identities=17% Similarity=0.125 Sum_probs=34.5
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEE-EecCe
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRL-VFRGK 60 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRL-I~~Gk 60 (135)
..|+|++-.-+. - +.|.|+++.+..+|+.+|.. +..+ +.+.+ .|++.
T Consensus 11 ~~~KVK~yy~DD-I-iAIrvP~di~~~~L~dKi~~--RLk~--~~~~l~~ykde 58 (85)
T 1ip9_A 11 KTTKIKFYYKDD-I-FALMLKGDTTYKELRSKIAP--RIDT--DNFKLQTKLFD 58 (85)
T ss_dssp CCEEEEECBTTC-C-EEEEECSCCCHHHHHHHHHH--HHTS--SCEEEEECCSS
T ss_pred CceEEEEEecCc-E-EEEECCCCCCHHHHHHHHHH--Hhcc--cceEEEEecCC
Confidence 457777777544 4 78999999999999999998 7666 34444 34443
No 159
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=66.02 E-value=14 Score=23.69 Aligned_cols=60 Identities=17% Similarity=0.151 Sum_probs=39.7
Q ss_pred EEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032742 11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA 87 (135)
Q Consensus 11 ~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI-lv~ 87 (135)
+|+|.+++|. .++++..+|+.|+=..|.. ..+ -.-.--...|+... | ++.|++|+.| ++.
T Consensus 7 ~i~v~tP~G~---~~~lp~GaT~~D~A~~Ih~--~lg--~~~v~AkVNG~~v~---------L-~~~L~~gd~VeIit 67 (78)
T 3hvz_A 7 EVFVFTPKGD---VISLPIGSTVIDFAYAIHS--AVG--NRMIGAKVDGRIVP---------I-DYKVKTGEIIDVLT 67 (78)
T ss_dssp EEEEECTTSC---EEEEETTCBHHHHHHHHCH--HHH--HTEEEEEETTEEEC---------T-TCBCCTTCBEEEEE
T ss_pred eEEEECCCCC---EEEecCCCCHHHHHHHhhh--hhh--cceEEEEECCEEcC---------C-CcccCCCCEEEEEc
Confidence 5788888884 6789999999998766643 221 11122234676654 3 3579999999 554
No 160
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=64.61 E-value=16 Score=25.58 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=53.4
Q ss_pred CCCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCC------ceEEE---ecCeec--CCCCCCCCCC
Q 032742 4 GEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIE------NLRLV---FRGKVL--DDTQDDDDRD 72 (135)
Q Consensus 4 ~~~~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~------~QRLI---~~Gk~L--~D~~t~d~~~ 72 (135)
|.+.+.+-..|-.....+ .++.++...|+.+++..+++ +.+..-+ .+.|+ +.|... ++++.
T Consensus 4 ~~~~Dei~~~VY~~Dhsy-~tvr~~v~~sa~eIl~~va~--kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~----- 75 (120)
T 2dhz_A 4 GSSGDEIFCRVYMPDHSY-VTIRSRLSASVQDILGSVTE--KLQYSEEPAGREDSLILVAVSSSGEKVLLQPTED----- 75 (120)
T ss_dssp CSSCCCEEECEECTTSCC-CCEEECTTCCHHHHHHHHHH--HSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCS-----
T ss_pred CCCCCcEEEEEEeccCce-EEEEEeccccHHHHHHHHHH--HhccccccccccCceEEEEEccCCcEeecCCcce-----
Confidence 445667778888888877 78999999999999999999 8876443 55554 566553 33333
Q ss_pred ccccCCCCCCEEEEEec
Q 032742 73 DVYLQLSNGDSVIAAVK 89 (135)
Q Consensus 73 L~~~~I~dG~tIlv~~~ 89 (135)
-..-.|.-+..|+++.+
T Consensus 76 sv~tsL~~NgRLfvc~k 92 (120)
T 2dhz_A 76 CVFTALGINSHLFACTR 92 (120)
T ss_dssp CHHHHSCSSEEEEEECT
T ss_pred EEEeeccccceEEEeeh
Confidence 22334555677766653
No 161
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=64.25 E-value=22 Score=23.71 Aligned_cols=62 Identities=11% Similarity=0.138 Sum_probs=50.1
Q ss_pred EEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE--EEEecCCCC
Q 032742 25 LSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV--IAAVKPKPP 93 (135)
Q Consensus 25 i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tI--lv~~~p~~~ 93 (135)
-.++....+..||+.++. +.++.-+.=.+...+..|..+++ |.+-.++-...| -|-+++.+.
T Consensus 7 qhmDI~epL~~Lk~LLe~--Rl~i~L~~y~f~LQd~~L~~~k~-----LvdQcVqgeGlVQinvqik~~~~ 70 (89)
T 2juo_A 7 QAIDINEPIGNLKKLLEP--RLQCSLDAHEICLQDIQLDPDRS-----LFDQGVKTDGTVQLSVQVISYQG 70 (89)
T ss_dssp EEEESSSBGGGHHHHSHH--HHCSCCSSCEEEETTEECCTTSB-----TTTSSCCCCSEEEEEEEEECCTT
T ss_pred hhccccCcHHHHHHHHHH--HhcCCcccCeEEeeccccCCCcc-----HHHhhcccccEEEEEEEEEecCC
Confidence 356777889999999999 99999999888889999988888 999999877777 334454433
No 162
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=63.41 E-value=9.6 Score=24.69 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=32.6
Q ss_pred CCCCCCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe
Q 032742 1 MGMGEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF 57 (135)
Q Consensus 1 ~~~~~~~~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~ 57 (135)
||..++..|-+|+|+.+. ++.|-.+|++.++. .-.+++...+++.
T Consensus 1 mg~~~~~~m~tlfV~nL~----------~~~tee~L~~~F~~--~G~i~v~~v~i~~ 45 (95)
T 2lkz_A 1 MGHHHHHHMDTIILRNIA----------PHTVVDSIMTALSP--YASLAVNNIRLIK 45 (95)
T ss_dssp CCCCSSCCCCEEEEESCC----------TTCCHHHHHHHSTT--TCCCCGGGEECCC
T ss_pred CCcccCCccCEEEEeCCC----------CcCCHHHHHHHHHh--hCCccEEEEEEEe
Confidence 777777888888888754 45699999998865 3335677777653
No 163
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=59.91 E-value=29 Score=21.65 Aligned_cols=55 Identities=9% Similarity=0.203 Sum_probs=36.3
Q ss_pred EEEecCCCcHHHHHHHHHhccCCC------C-----CCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 24 RLSVSSPIKVRDLRKLIATSSANH------L-----PIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 24 ~i~v~~~~TV~dLK~~Ia~~~~~~------i-----p~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
.++++...||.+|.+.+.. ... + ......+..+|+...... -.+..+++||.|.+
T Consensus 18 ~~~~~~~~tv~~ll~~l~~--~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~------~~~~~l~~gD~V~i 83 (90)
T 2g1e_A 18 EETFNGISKISELLERLKV--EYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK------GLDTEIKDDDKIDL 83 (90)
T ss_dssp EEEESSCCBHHHHHHHHHH--HSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC------SSSCBCCTTCEEEE
T ss_pred EEEcCCCCcHHHHHHHHHH--HCcchhhhccccccCcCcceEEEECCEEccccC------CCCcCCCCCCEEEE
Confidence 4567767899999999876 431 1 114456788888775221 23457999999933
No 164
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=59.46 E-value=35 Score=22.50 Aligned_cols=71 Identities=6% Similarity=-0.039 Sum_probs=55.6
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCC-C--C--CCCceEEEecCee--cCCCCCCCCCCccccCCCCC
Q 032742 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSAN-H--L--PIENLRLVFRGKV--LDDTQDDDDRDDVYLQLSNG 81 (135)
Q Consensus 9 ~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~-~--i--p~~~QRLI~~Gk~--L~D~~t~d~~~L~~~~I~dG 81 (135)
.+-|.....+.....-+.|+.+.|+.++=++++. .. | + .|.-.|.-++|.. ++.+.+ +.+.||+.-
T Consensus 3 ~~Pl~~~F~gDFv~~Lv~VDt~dtmdqVA~k~A~--h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mt-----VaeaGl~Pm 75 (84)
T 3ge3_C 3 AFPVHAAFEKDFLVQLVVVDLNDSMDQVAEKVAY--HCVNRRVAPREGVMRVRKHRSTELFPRDMT-----IAESGLNPT 75 (84)
T ss_dssp EEEEEEEETTCSBEEEEEEETTCBHHHHHHHHHH--TTBTTTBCCCSSCEEEEETTCSCBCCTTCB-----HHHHCCCTT
T ss_pred ccceEEEeccccEEEEEEecCCCcHHHHHHHHhh--hhcceeeCCCCCcEEEEECCCcccCCCCCE-----eeccCCCcc
Confidence 3556666666766456899999999999999987 33 3 2 2446899999999 888888 999999999
Q ss_pred CEE-EE
Q 032742 82 DSV-IA 86 (135)
Q Consensus 82 ~tI-lv 86 (135)
+.| ++
T Consensus 76 e~vev~ 81 (84)
T 3ge3_C 76 EVIDVV 81 (84)
T ss_dssp CEEEEE
T ss_pred eEEEEE
Confidence 988 54
No 165
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=59.15 E-value=4.3 Score=20.78 Aligned_cols=14 Identities=14% Similarity=0.555 Sum_probs=11.5
Q ss_pred chHHHHHHHHhccc
Q 032742 117 TSRWKRKLLLFSPQ 130 (135)
Q Consensus 117 ~~~~~~~~~~~~~~ 130 (135)
..||+++|+-.|++
T Consensus 12 iarwekriayalkn 25 (26)
T 1hji_B 12 IARWEKRIAYALKN 25 (26)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 47999999988764
No 166
>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling protein/complex, RAS, ubiquitin superfold, oncogene, GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP: d.15.1.5 PDB: 2byf_A
Probab=53.69 E-value=45 Score=23.16 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=33.8
Q ss_pred CCCCceEEEEEeCCCCCcEE-EEecCCCcHHHHHHHHHhccCCCCC
Q 032742 5 EISESVEITVKTIGPAPPSR-LSVSSPIKVRDLRKLIATSSANHLP 49 (135)
Q Consensus 5 ~~~~~m~I~VKt~~~~~~~~-i~v~~~~TV~dLK~~Ia~~~~~~ip 49 (135)
.+++|.-+.|-...+..+++ |.++..+|+.+|-+++-. +.|.+
T Consensus 3 ~~~~tf~v~V~~v~p~~py~iv~vt~~STAqdvI~eaL~--kag~~ 46 (117)
T 2c5l_C 3 SEEESFFVQVHDVSPEQPRTVIKAPRVSTAQDVIQQTLC--KAKYS 46 (117)
T ss_dssp --CCEEEEEEESCCSSCCEEEEEEETTCBHHHHHHHHHH--HTTTS
T ss_pred ccCceEEEEEecCCCCCCeEEEEeCCCCcHHHHHHHHHH--HcCCc
Confidence 35689999999888888876 799999999999877665 66654
No 167
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=51.10 E-value=27 Score=23.93 Aligned_cols=34 Identities=3% Similarity=-0.047 Sum_probs=28.6
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHh
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIAT 42 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~ 42 (135)
..+.|.+-.+.|-. +.++++.++|+.++|+.+-+
T Consensus 18 ~~v~v~~LlPnGi~-i~l~~~~~~tl~eiK~~lw~ 51 (108)
T 2v1y_A 18 PRILVECLLPNGMI-VTLECLREATLITIKHELFK 51 (108)
T ss_dssp SEEEEEEECTTSCE-EEEEEETTCBHHHHHHHHHH
T ss_pred CcEEEEEEcCcEEE-EEEEeeccccHHHHHHHHHH
Confidence 56888888888855 77899999999999998776
No 168
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=46.74 E-value=25 Score=23.04 Aligned_cols=30 Identities=3% Similarity=-0.062 Sum_probs=22.9
Q ss_pred CCCceEEEEEeCCCCCcEEEEecCCCcHHHH
Q 032742 6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDL 36 (135)
Q Consensus 6 ~~~~m~I~VKt~~~~~~~~i~v~~~~TV~dL 36 (135)
...|++|+|....+.. +.+++++..|+.+.
T Consensus 3 ~~~m~~V~~~~~~g~~-~~v~~~~g~tLL~a 32 (108)
T 2bt6_A 3 SGDKITVHFINRDGET-LTTKGKIGDSLLDV 32 (108)
T ss_dssp --CEEEEEEECTTSCE-EEEEEETTCBHHHH
T ss_pred CCceEEEEEECCCCCE-EEEEECCCChHHHH
Confidence 4568899998777754 78999999999765
No 169
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=46.59 E-value=18 Score=24.49 Aligned_cols=40 Identities=15% Similarity=0.008 Sum_probs=29.0
Q ss_pred CceEEEEEeCCC------CCcEEEEecCCCcHHHHHHHHHhccCCCCC
Q 032742 8 ESVEITVKTIGP------APPSRLSVSSPIKVRDLRKLIATSSANHLP 49 (135)
Q Consensus 8 ~~m~I~VKt~~~------~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip 49 (135)
..|.|+|...+. .-.+.+-|+++.+..+|..+|.. +.+++
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~--Kl~~~ 49 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINS--KISNT 49 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHH--HHHHH
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHH--HHcCC
Confidence 346777765421 11267899999999999999988 77654
No 170
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=42.37 E-value=51 Score=21.82 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=33.4
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCce-EEEecCeecC
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENL-RLVFRGKVLD 63 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~Q-RLI~~Gk~L~ 63 (135)
+.+.|++.+|=-++|+.|+. .+++.+... -+++.|+.--
T Consensus 30 ~~F~V~~~AnK~eIK~AVE~--lf~VkV~~VnT~~~~gK~kR 69 (93)
T 3r8s_T 30 IVLKVAKDATKAEIKAAVQK--LFEVEVEVVNTLVVKGKVKR 69 (93)
T ss_dssp EEEEECSSCCHHHHHHHHHH--HSCCCCCEEEEEEECCCBCC
T ss_pred EEEEECCCCCHHHHHHHHHH--HcCCceEEEEEEEeCCceee
Confidence 78999999999999999999 999998884 5578887653
No 171
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=42.37 E-value=1.2e+02 Score=23.82 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=38.5
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCC-CCceEEEec
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLP-IENLRLVFR 58 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip-~~~QRLI~~ 58 (135)
..+.+.|..+++.. ..+.+++.+|+.+|=+.|.. ..|+. .+-.-|.+.
T Consensus 84 ~~~~~~V~l~dg~~-~~~~vd~~tt~~el~~~v~~--~l~L~e~~~FgL~~~ 132 (371)
T 3ivf_A 84 KQRPLKIRMLDGTV-KTIMVDDSKTVTDMLMTICA--RIGITNHDEYSLVRE 132 (371)
T ss_dssp CEEEEEEECTTSCE-EEEEEETTSBHHHHHHHHHH--HTTCSCGGGEEEECC
T ss_pred ceeEEEEECcCCCE-EEEEECCCCCHHHHHHHHHH--HcCCCCccccEEEEE
Confidence 35788898988876 78999999999999999988 88865 444666554
No 172
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=42.06 E-value=60 Score=21.24 Aligned_cols=52 Identities=15% Similarity=0.319 Sum_probs=38.3
Q ss_pred CCceEEEEEeCCCCCcE---EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCe
Q 032742 7 SESVEITVKTIGPAPPS---RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGK 60 (135)
Q Consensus 7 ~~~m~I~VKt~~~~~~~---~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk 60 (135)
...|.|.++..+.-..+ .+-|+.+.|++++...|.. +.++++++-=.+|-..
T Consensus 3 ~~Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRk--rL~l~~~~alFlyVnn 57 (91)
T 4gdk_A 3 KKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKK--FLKLVASEQLFIYVNQ 57 (91)
T ss_dssp -CEEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHH--HTTCCSSSCCEEEETT
T ss_pred CceEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHH--HhCCCCCCeEEEEECC
Confidence 35678888876654322 3789999999999999998 8888887755555444
No 173
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=41.61 E-value=16 Score=23.48 Aligned_cols=25 Identities=20% Similarity=0.032 Sum_probs=22.0
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCC
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANHLP 49 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~ip 49 (135)
+.|-|+++.+..+|..+|.. +.+..
T Consensus 4 ~~i~V~~~i~f~~L~~kI~~--kl~~~ 28 (77)
T 1pqs_A 4 FTLLVEKVWNFDDLIMAINS--KISNT 28 (77)
T ss_dssp EEEECTTCCCSHHHHHHHHH--HTTTT
T ss_pred EEEEeCCCCCHHHHHHHHHH--HHccc
Confidence 57889999999999999998 88764
No 174
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=37.53 E-value=52 Score=22.58 Aligned_cols=31 Identities=13% Similarity=0.033 Sum_probs=25.0
Q ss_pred CCCCceEEEEEeCCCCCcEEEEecCCCcHHHH
Q 032742 5 EISESVEITVKTIGPAPPSRLSVSSPIKVRDL 36 (135)
Q Consensus 5 ~~~~~m~I~VKt~~~~~~~~i~v~~~~TV~dL 36 (135)
...+|++|+|....+.. ..+++++..|+.+.
T Consensus 17 ~~~~M~~Vt~~~~~G~~-~~v~~~~G~tLL~a 47 (126)
T 3hui_A 17 RGSHMAKINFVDHTGET-RTVEVEEGATVMEA 47 (126)
T ss_dssp TTCSEEEEEEECTTSCE-EEEEEETTSBHHHH
T ss_pred CCCCceEEEEEeCCCCE-EEEEECCCCcHHHH
Confidence 34678999999777754 78999999999874
No 175
>2aff_B MKI67 FHA domain interacting nucleolar phosphoPro; NIFK, , phosphoprotein, cell cycle; HET: SEP TPO; NMR {Homo sapiens}
Probab=37.39 E-value=9.1 Score=22.36 Aligned_cols=14 Identities=50% Similarity=0.686 Sum_probs=8.3
Q ss_pred CCcccccc-ccCCCc
Q 032742 103 IDDDDLDL-FKLPQS 116 (135)
Q Consensus 103 ~~~~~~~~-~~~~~~ 116 (135)
+||+|++. ||+|.+
T Consensus 29 dDd~D~EIvfK~P~~ 43 (44)
T 2aff_B 29 DDDKDDEIVFKQPIS 43 (44)
T ss_dssp GGGGSCSEEESSCC-
T ss_pred CCCccceEEeecCCC
Confidence 34455554 999864
No 176
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=34.87 E-value=35 Score=26.41 Aligned_cols=48 Identities=19% Similarity=0.089 Sum_probs=38.1
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCc-eEEEec
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN-LRLVFR 58 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~-QRLI~~ 58 (135)
..+.+.|..+++.. ..+.|++.+|+.+|=..|.+ ..|+.-.. .-|.|.
T Consensus 16 ~~~~~~V~lldgt~-~~~~vd~~tt~~el~~~v~~--~l~L~e~~~FgL~~~ 64 (296)
T 3qij_A 16 FQGHCKVSLLDDTV-YECVVEKHAKGQDLLKRVCE--HLNLLEEDYFGLAIW 64 (296)
T ss_dssp -CCEEEEECTTSCE-EEEECCTTCBHHHHHHHHHH--HHTCSSGGGEEEEEE
T ss_pred ceEEEEEEccCCCE-EEEEECCCCCHHHHHHHHHH--HcCCCCcceeEEEEE
Confidence 46899999999876 88999999999999999998 88876333 455443
No 177
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.55 E-value=1e+02 Score=20.44 Aligned_cols=52 Identities=19% Similarity=0.224 Sum_probs=32.9
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec--CeecCCCC
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR--GKVLDDTQ 66 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~--Gk~L~D~~ 66 (135)
--..|.+..... ..-|-. .+..||+.+..+ +++++....+|++. |..++|+.
T Consensus 10 kpfkV~~~~Rs~--k~GV~A-~sL~EL~~K~~~--~l~l~~~~~~lvLeeDGT~VddEe 63 (91)
T 2eel_A 10 RPFRVSNHDRSS--RRGVMA-SSLQELISKTLD--ALVIATGLVTLVLEEDGTVVDTEE 63 (91)
T ss_dssp EEEEEECTTSCC--CEEEEE-SSHHHHHHHHHH--HTTCSSSCEEEEETTTCCBCCCHH
T ss_pred CCEEEecCCCCe--EEeEEc-CCHHHHHHHHHH--HhcCCCCCcEEEEeeCCcEEechh
Confidence 344455544332 223333 489999999988 89998767777654 77766543
No 178
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=32.61 E-value=1.1e+02 Score=22.09 Aligned_cols=54 Identities=19% Similarity=0.251 Sum_probs=35.4
Q ss_pred EEEecCCCcHHHHHHHHHhccCCC-CC---------CCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032742 24 RLSVSSPIKVRDLRKLIATSSANH-LP---------IENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 24 ~i~v~~~~TV~dLK~~Ia~~~~~~-ip---------~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
.++++. .||.+|.+.+.. ... +. .....+..+|....... -.+..|++||.|.+
T Consensus 17 ~~ev~~-~TV~dLl~~L~~--~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~------~~dt~L~dGDeVai 80 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVR--AYPALKEELFEGEGLAERVSVFLEGRDVRYLQ------GLSTPLSPGATLDL 80 (168)
T ss_dssp EEECCC-SBHHHHHHHHHH--HCGGGHHHHEETTEECTTCEEEETTEEGGGTT------GGGCBCCTTCEEEE
T ss_pred eEEECC-CcHHHHHHHHHh--hChhhhhhhhcccccCCcEEEEECCEECCCcC------CCccCCCCCCEEEE
Confidence 456665 899999999876 431 10 23456778888775422 23557999999933
No 179
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=32.51 E-value=71 Score=21.05 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=32.6
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCce-EEEecCeec
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENL-RLVFRGKVL 62 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~Q-RLI~~Gk~L 62 (135)
+.+.|++.+|=-++|+.|+. .+++.+... .++..|+.-
T Consensus 24 ~~F~V~~~AnK~qIK~aVe~--lf~VkV~~VnT~~~~gK~k 62 (92)
T 3tve_T 24 YTFWVHPKATKTEIKNAVET--AFKVKVVKVNTLHVRGKKK 62 (92)
T ss_dssp EEEEECTTCCHHHHHHHHHH--HTTCCEEEEEEEEECCCEE
T ss_pred EEEEECCCCCHHHHHHHHHH--HhCCceeeeeeeeeCCcee
Confidence 78999999999999999999 999998884 456777654
No 180
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=31.95 E-value=49 Score=25.15 Aligned_cols=45 Identities=11% Similarity=0.176 Sum_probs=35.3
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCc-eEEEe
Q 032742 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN-LRLVF 57 (135)
Q Consensus 9 ~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~-QRLI~ 57 (135)
+|.+.|...++. ..+.+++.+|+.+|=+.|.+ ..|+.... .-|.|
T Consensus 1 ~i~~~V~l~d~~--~~~~v~~~tt~~el~~~v~~--~l~L~e~~~FgL~~ 46 (294)
T 1ef1_A 1 TISVRVTTMDAE--LEFAIQPNTTGKQLFDQVVK--TIGLREVWFFGLQY 46 (294)
T ss_dssp CEEEEEEETTEE--EEEEECTTCBHHHHHHHHHH--HHTCCCGGGEEEEE
T ss_pred CEEEEEEECCce--EEEEECCCCcHHHHHHHHHH--HcCCCCcceeEEEE
Confidence 477888888873 67999999999999999988 88876433 44544
No 181
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=31.58 E-value=1.1e+02 Score=20.21 Aligned_cols=66 Identities=20% Similarity=0.165 Sum_probs=40.1
Q ss_pred CceEEEEEeCCCC--CcEEEEe-cCCCcHHHHHHHHHhccCCCCCCCceEE--E------ecCeecCCCCCCCCCCcccc
Q 032742 8 ESVEITVKTIGPA--PPSRLSV-SSPIKVRDLRKLIATSSANHLPIENLRL--V------FRGKVLDDTQDDDDRDDVYL 76 (135)
Q Consensus 8 ~~m~I~VKt~~~~--~~~~i~v-~~~~TV~dLK~~Ia~~~~~~ip~~~QRL--I------~~Gk~L~D~~t~d~~~L~~~ 76 (135)
+.|.|+-|-.+.. .+-.+-+ +..+||+||=.+|+. ..+ ++.+. + |.|+... .++
T Consensus 10 ~lIrVYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~--di~---~~fkyA~VwG~saK~~~qrVg----------ldh 74 (93)
T 2eki_A 10 KLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHK--NLI---KEFKYALVWGLSVKHNPQKVG----------KDH 74 (93)
T ss_dssp CEEEEEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCT--TCT---TTEEEEEEBSTTSSSSSEEEC----------SSC
T ss_pred CeEEEEeCCCCCCCCCCCCEEEecCCCCHHHHHHHHHH--HHH---hhccEEEEecccccCCCEECC----------CCc
Confidence 4577777655552 2234788 888999999998876 332 22221 1 1233332 345
Q ss_pred CCCCCCEE-EEEe
Q 032742 77 QLSNGDSV-IAAV 88 (135)
Q Consensus 77 ~I~dG~tI-lv~~ 88 (135)
.|++||.| ++..
T Consensus 75 ~L~d~DVV~Iv~~ 87 (93)
T 2eki_A 75 TLEDEDVIQIVKK 87 (93)
T ss_dssp CCCSSEEECEEEC
T ss_pred EecCCCEEEEEeC
Confidence 68899999 7655
No 182
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=30.70 E-value=1.2e+02 Score=23.84 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=31.2
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCc
Q 032742 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN 52 (135)
Q Consensus 9 ~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~ 52 (135)
.+-|+|-...+.. ..|.|++++|++||=+.++. +.+++...
T Consensus 31 k~ivkv~~~D~ss-~~l~V~~~~TA~dv~~~L~~--k~~~~~~~ 71 (281)
T 4gmv_A 31 KLVIRVHMSDDSS-KTMMVDERQTVRQVLDNLMD--KSHCGYSL 71 (281)
T ss_dssp EEEEEEEETTSCE-EEEEEETTCBHHHHHHHHHH--HSCCCCCT
T ss_pred cEEEEEEecCCCE-EEEEECCCCcHHHHHHHHHH--hcCCCCCC
Confidence 3556666666644 78999999999999988887 77765444
No 183
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=30.66 E-value=79 Score=26.55 Aligned_cols=48 Identities=10% Similarity=0.117 Sum_probs=39.2
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC--CceEEEec
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI--ENLRLVFR 58 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~--~~QRLI~~ 58 (135)
..+.+.|...+|.. ..+.+++.+|+.+|-+.|+. ..|+.. +-.-|.+.
T Consensus 215 ~~~~~~V~l~dg~~-~~~~v~~~tt~~el~~~v~~--~lgL~e~~~~FgL~~~ 264 (555)
T 3au4_A 215 QEMTSTVYCHGGGS-CKITINSHTTAGEVVEKLIR--GLAMEDSRNMFALFEY 264 (555)
T ss_dssp CCEEEEEEETTSCE-EEEEECTTCBHHHHHHHHHH--HTTCTTCCSEEEEEEE
T ss_pred CCcceEEEecCCCe-EEEEeCCCCcHHHHHHHHHH--HcCCCCCCCceEEEEE
Confidence 46888999998876 78999999999999999998 899864 44556543
No 184
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=30.31 E-value=99 Score=20.25 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=34.9
Q ss_pred CceEEEEEeCCCCCcEEEEecC--CCcHHHHHHHHHhccCCCCCCCceEEEecC
Q 032742 8 ESVEITVKTIGPAPPSRLSVSS--PIKVRDLRKLIATSSANHLPIENLRLVFRG 59 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~--~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~G 59 (135)
..+.|+.|.-..- +.+.++. ..+..+|..+++. .+.++....-+-|.-
T Consensus 5 ~~l~vKskf~aE~--RRFs~d~~~~~~fe~f~~lv~~--lh~L~~~~f~i~Y~D 54 (86)
T 1wmh_B 5 SIVEVKSKFDAEF--RRFALPRASVSGFQEFSRLLRA--VHQIPGLDVLLGYTD 54 (86)
T ss_dssp CEEEEEEEETTEE--EEEEEEGGGCCCHHHHHHHHHH--HTTCTTCCCEEEEEC
T ss_pred CEEEEEeecCCee--eEeEccCCCCCCHHHHHHHHHH--HcCCCCCCEEEEEEC
Confidence 4566666664443 4567764 4899999999998 888877778887764
No 185
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=29.50 E-value=69 Score=21.34 Aligned_cols=62 Identities=15% Similarity=0.274 Sum_probs=39.7
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCC---CC--------ceEEEecC-eecCCCCCCC--CCCccccCCCCCCEEEEE
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANHLP---IE--------NLRLVFRG-KVLDDTQDDD--DRDDVYLQLSNGDSVIAA 87 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~ip---~~--------~QRLI~~G-k~L~D~~t~d--~~~L~~~~I~dG~tIlv~ 87 (135)
..+++++++|+.+|-+.+.+ ...+. |+ ...|+.++ ..|+. .+.. ++++.++|+.+|+.|.|-
T Consensus 7 ~~l~v~~~~TL~~lid~L~~--~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee-~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 7 QNIQFSPSAKLQEVLDYLTN--SASLQMKSPAITATLEGKNRTLYMQSVTSIEE-RTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCEECCTTCBHHHHHHHHHH--CTTCCCSSCEEEEEETTEEEEEECSSCHHHHH-HHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred EEEEECCchhHHHHHHHHHh--ChHhhccCCeeeeecCCCCCeEEEeCcHHHHH-HhHhhhhCCHHHhCCCCCCEEEEE
Confidence 57899999999999999987 43322 11 34444444 12322 0100 134899999999998763
No 186
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=29.44 E-value=72 Score=20.75 Aligned_cols=28 Identities=14% Similarity=0.010 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHH
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDL 36 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dL 36 (135)
+|++|++....+.. +.+++++..|+.+.
T Consensus 4 ~m~~v~~~~~~g~~-~~~~~~~g~tlL~a 31 (109)
T 2y5c_A 4 DVVNVVFVDRSGQR-IPVSGRVGDNVLHL 31 (109)
T ss_dssp CEEEEEEECTTSCE-EEEEEETTCBHHHH
T ss_pred CcEEEEEEcCCCCE-EEEEECCCCcHHHH
Confidence 57888887767754 67999999999875
No 187
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=27.71 E-value=67 Score=24.71 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=46.3
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC-CceEEEe--cCee--cCCCCCCCCCCccccCCCCCC
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI-ENLRLVF--RGKV--LDDTQDDDDRDDVYLQLSNGD 82 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~-~~QRLI~--~Gk~--L~D~~t~d~~~L~~~~I~dG~ 82 (135)
..+.+.|...++ . ..+.+++.+|+.+|=+.|.. ..|+.- +-.-|.| .|.. |+.+.. +.+..++.+.
T Consensus 21 ~~~~~~V~lldg-~-~~~~v~~~t~~~el~~~v~~--~l~L~e~~~FgL~~~~~~~~~wL~~~~~-----i~~q~~~~~~ 91 (314)
T 1h4r_A 21 KTFTVRIVTMDA-E-MEFNCEMKWKGKDLFDLVCR--TLGLRETWFFGLQYTIKDTVAWLKMDKK-----VLDHDVSKEE 91 (314)
T ss_dssp CEEEEEEECSSC-E-EEEEEETTCBHHHHHHHHHH--HHTCCCGGGEEEEEEETTEEEECCTTSB-----GGGSSCCCSS
T ss_pred CeeEEEEEeCCc-e-EEEEeCCCCcHHHHHHHHHH--HhCCCCCccceEEEEeCCcCeeCCCccC-----HHHcCCCCCC
Confidence 568888888887 3 77999999999999999988 888763 3344444 3322 444444 6666554444
Q ss_pred EE
Q 032742 83 SV 84 (135)
Q Consensus 83 tI 84 (135)
..
T Consensus 92 ~~ 93 (314)
T 1h4r_A 92 PV 93 (314)
T ss_dssp SE
T ss_pred CE
Confidence 33
No 188
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=27.58 E-value=1.2e+02 Score=23.35 Aligned_cols=45 Identities=16% Similarity=0.201 Sum_probs=28.1
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF 57 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~ 57 (135)
.-|+|-...+.. ..|.|++++|++||=+.++. +.++..+.-..+|
T Consensus 9 ~ivkv~~~d~ss-~~l~V~~~mta~ev~~~l~~--k~~~~~~~~W~l~ 53 (256)
T 3hk0_A 9 QDVKVFSEDGTS-KVVEILADMTARDLCQLLVY--KSHSVDDNSWTLV 53 (256)
T ss_dssp EEEEEEETTSCE-EEEEECTTCBHHHHHHHHHC--CC-------EEEE
T ss_pred eEEEEEecCCcE-EEEEECCCCCHHHHHHHHHH--hcCCCCCCCEEEE
Confidence 345555666643 78999999999999999887 7776544433333
No 189
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=26.09 E-value=89 Score=19.76 Aligned_cols=29 Identities=21% Similarity=0.048 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHH
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLR 37 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK 37 (135)
.+++|+|.+..+.. ..+++++..|+.+.=
T Consensus 3 ~~~~v~~~~~~~~~-~~~~~~~g~tlL~a~ 31 (98)
T 1jq4_A 3 RVHTITAVTEDGES-LRFECRSDEDVITAA 31 (98)
T ss_dssp CEEEEEEEETTTEE-EEEEEESCCTHHHHH
T ss_pred CcEEEEEEecCCCc-EEEEeCCCChHHHHH
Confidence 46788888765544 678999999998764
No 190
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Probab=25.62 E-value=1.1e+02 Score=26.93 Aligned_cols=90 Identities=10% Similarity=0.022 Sum_probs=49.5
Q ss_pred EEEEecC-CCcHHHHHHHH-HhccCCCCCCC-------ceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEecCCCC
Q 032742 23 SRLSVSS-PIKVRDLRKLI-ATSSANHLPIE-------NLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVKPKPP 93 (135)
Q Consensus 23 ~~i~v~~-~~TV~dLK~~I-a~~~~~~ip~~-------~QRLI~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~~p~~~ 93 (135)
..+.++. ..|+.+|-+.| .+ +.|+... ..+++|..-.. +..-.-+++|+++++++|+.+.|---...-
T Consensus 450 ~~~~~~~~~~TL~~li~~~~~~--~~~l~~~~is~~~~~~~~ly~~~~~-~~~~~l~~~l~el~v~~~~~~~v~d~~~~~ 526 (640)
T 1y8q_B 450 VTVRLNVHKVTVLTLQDKIVKE--KFAMVAPDVQIEDGKGTILISSEEG-ETEANNHKKLSEFGIRNGSRLQADDFLQDY 526 (640)
T ss_dssp EEEEECTTTCBHHHHHHCCCCC--CTCCSSCEEEESSSSCCEEECSSSS-SSTTGGGSBGGGGTCCTTCEEEEEETTTTE
T ss_pred EEEEEeCCCCcHHHHHHHHHHH--hhCCCCceEEEEcCCCcEEEeccch-hhHHhhhCcHHHhCccCCcEEEecCCCccE
Confidence 4566665 57999998875 55 5665432 34567754321 111011366999999999988653322111
Q ss_pred CccccCCCCCCccccccccCCC
Q 032742 94 PRHLRDDTCIDDDDLDLFKLPQ 115 (135)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~ 115 (135)
.-.+.-.|+++.++.+.|.|+.
T Consensus 527 ~~~i~~~~~~~~~~~~~~~~~~ 548 (640)
T 1y8q_B 527 TLLINILHSEDLGKDVEFEVVG 548 (640)
T ss_dssp EEEEEEEECSCCCTTCCEEETT
T ss_pred EEEEEEEecCcccCCCCeEEec
Confidence 1112222455555555677754
No 191
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=25.11 E-value=1.5e+02 Score=19.92 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=31.9
Q ss_pred CcHHHHHHHHHhccCCCCCCC--ceEEE--ecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032742 31 IKVRDLRKLIATSSANHLPIE--NLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV 88 (135)
Q Consensus 31 ~TV~dLK~~Ia~~~~~~ip~~--~QRLI--~~Gk~L~D~~t~d~~~L~~~~I~dG~tIlv~~ 88 (135)
.+..+|+.+..+ +++++.. ..+|+ .-|..++|+.. .. -+.++..++++.
T Consensus 37 ~SL~EL~~K~~~--~l~l~~~~~~~~lvLeeDGT~VddEeY-----F~--tLp~nT~lmvL~ 89 (100)
T 1f2r_I 37 SSLEELRSKACE--LLAIDKSLTPITLVLAEDGTIVDDDDY-----FL--CLPSNTKFVALA 89 (100)
T ss_dssp SSHHHHHHHHHH--HHCCCGGGCSCEEEESSSCCBCCSSSS-----SS--SSCSCCEEEEEC
T ss_pred CCHHHHHHHHHH--HhccCCCCCceEEEEeeCCcEEechhH-----hh--cCCCCCEEEEEc
Confidence 489999999988 8888753 35664 35888776554 33 344444445444
No 192
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=24.68 E-value=81 Score=22.86 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=30.7
Q ss_pred CceEEEEEeCC--CCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCc
Q 032742 8 ESVEITVKTIG--PAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN 52 (135)
Q Consensus 8 ~~m~I~VKt~~--~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~ 52 (135)
...+++|.-.+ ...-+.|.|+.+.|..+|=..|+. ..|..-..
T Consensus 7 ~iy~lrV~L~~~~p~iWRri~Vp~~~TL~~LH~vIq~--afgw~~~H 51 (188)
T 2i1s_A 7 KVYHLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQA--VMDWEDYH 51 (188)
T ss_dssp EEEEEEEEETTCSSCEEEEEEEETTCBHHHHHHHHHH--HTTCCCCS
T ss_pred cEEEEEEEECCCCCCeEEEEEECCCCCHHHHHHHHHH--HhCCCCCE
Confidence 34455555443 333256999999999999999998 88876554
No 193
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=24.44 E-value=3e+02 Score=22.80 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=23.9
Q ss_pred ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHh
Q 032742 9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIAT 42 (135)
Q Consensus 9 ~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~ 42 (135)
+++++|+.........|+++..+++.++=++.++
T Consensus 318 ~VtytV~~~~~~~~~~Vtv~~gssll~vLk~A~e 351 (414)
T 2bb6_A 318 DVLLKVSGISPSYRHSVSVPAGSSLEDILKNAQE 351 (414)
T ss_dssp EEEEEEESSSSCEEEEEEEETTCCHHHHHHHHHH
T ss_pred EEEEEEeeCCCccceEEEecCCCCHHHHHHHHHh
Confidence 3555666544444356899999999998877776
No 194
>4gdk_C APG16-like 1, autophagy-related protein 16-1; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_C
Probab=24.33 E-value=22 Score=19.82 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=12.8
Q ss_pred chHHHHHHHHhcccc
Q 032742 117 TSRWKRKLLLFSPQQ 131 (135)
Q Consensus 117 ~~~~~~~~~~~~~~~ 131 (135)
.+.|++.++.-|++|
T Consensus 3 ~~~Wrr~I~~~Lr~R 17 (36)
T 4gdk_C 3 MPRWKRHISEQLRRR 17 (36)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHh
Confidence 578999999988876
No 195
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=24.18 E-value=1.9e+02 Score=25.25 Aligned_cols=60 Identities=12% Similarity=0.192 Sum_probs=39.7
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCC--CCCC--------ceEEEecCe--e----cCCCCCCCCCCccccCCCCCCEEEE
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANH--LPIE--------NLRLVFRGK--V----LDDTQDDDDRDDVYLQLSNGDSVIA 86 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~--ip~~--------~QRLI~~Gk--~----L~D~~t~d~~~L~~~~I~dG~tIlv 86 (135)
..+.++.+.|+.+|-+.+.. +.. +..- ..+++|... . ..++. +++|.++++.+|+.|.|
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l---~~~l~~l~~~~~~~~~~ 788 (805)
T 2nvu_B 714 QNIQFSPSAKLQEVLDYLTN--SASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNL---SKTLKELGLVDGQELAV 788 (805)
T ss_dssp EEEEECTTSBHHHHHHHHHH--CTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGG---GSBTTTTTCCTTCEEEE
T ss_pred EEEEECCcChHHHHHHHHHh--hhccCcccceEEEEccCCCcEEEecCccchhhhhHhhh---cCCHHHcCCCCCCEEEE
Confidence 56888888999999888877 543 3211 247777643 1 11221 25599999999998866
Q ss_pred E
Q 032742 87 A 87 (135)
Q Consensus 87 ~ 87 (135)
.
T Consensus 789 ~ 789 (805)
T 2nvu_B 789 A 789 (805)
T ss_dssp E
T ss_pred E
Confidence 4
No 196
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=23.66 E-value=3.1e+02 Score=23.39 Aligned_cols=68 Identities=9% Similarity=0.114 Sum_probs=46.7
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC-CceEEEecC-----eecCCCCCCCCCCccccCCCCC
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI-ENLRLVFRG-----KVLDDTQDDDDRDDVYLQLSNG 81 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~-~~QRLI~~G-----k~L~D~~t~d~~~L~~~~I~dG 81 (135)
..|.+.|...+|. +.+.+++.+|+.+|=..|.. ..|+.- +-.-|.|.. ..|..+.. +...+++.+
T Consensus 3 k~i~v~V~llDgt--~e~~vd~~tt~~ell~~V~~--~LgL~e~~~FGL~~~d~~~~~~WLd~~k~-----i~~q~~~~~ 73 (575)
T 2i1j_A 3 KSMNVRVTTMDAE--LEFAIQQTTTGKQLFDQVVK--TIGLREVWFFGLQYTDSKGDLTWIKLYKK-----VMQQDVKKE 73 (575)
T ss_dssp CEEEEEEECSSCE--EEEEEETTCBHHHHHHHHHH--HHTCCCGGGEEEEEEBTTSCEEECCTTSB-----GGGSCBCCC
T ss_pred ceEEEEEEeCCCe--EEEEECCCCCHHHHHHHHHH--HcCCCCccceeEEEEecCcchhHhhcccc-----HHHhcccCC
Confidence 6789999999873 67999999999999999988 888753 335555532 12333333 666555555
Q ss_pred CEE
Q 032742 82 DSV 84 (135)
Q Consensus 82 ~tI 84 (135)
...
T Consensus 74 ~~~ 76 (575)
T 2i1j_A 74 NPL 76 (575)
T ss_dssp SSE
T ss_pred CCe
Confidence 443
No 197
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=23.64 E-value=1.6e+02 Score=19.35 Aligned_cols=64 Identities=20% Similarity=0.307 Sum_probs=43.8
Q ss_pred eCCCCCcEE-EEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCee-cCCCCCCCCCCccccCCCCCCEE-EE
Q 032742 16 TIGPAPPSR-LSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKV-LDDTQDDDDRDDVYLQLSNGDSV-IA 86 (135)
Q Consensus 16 t~~~~~~~~-i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~-L~D~~t~d~~~L~~~~I~dG~tI-lv 86 (135)
+...+.++. ++|+..+-...+-+..++ ++++|+..--+|-.... +...++ -...-++.|+.+ ++
T Consensus 18 tSdpklpfkvlsVPE~~PftAVlkfaaE--eF~vp~~TsAiiT~dGiGInP~Qt-----AGnvFlKhGseLrlI 84 (92)
T 1j0g_A 18 TSDPRLPYKVLSVPESTPFTAVLKFAAE--EFKVPAATSAIITNDGIGINPAQT-----AGNVFLKHGSELRII 84 (92)
T ss_dssp TTSTTCCEEEEEEETTSBHHHHHHHHHH--HTTCCSSSEEEECTTSCCCCCSSB-----HHHHHHHTCSEEEEE
T ss_pred ccCCCCCceEEecCccCchHHHHHHHHH--HcCCCccceEEEecCCcccChhhc-----cchhhhhcCceeEec
Confidence 445555565 799999888888788888 89999988777755433 333333 445556777777 54
No 198
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=23.42 E-value=58 Score=21.62 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=31.9
Q ss_pred EEEEecCCCcHHHHHHHHHhccCCCCCCCceE-EEecCeec
Q 032742 23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLR-LVFRGKVL 62 (135)
Q Consensus 23 ~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QR-LI~~Gk~L 62 (135)
+++.|++.+|=-++|+.|+. .+++.+.... +++.||.-
T Consensus 25 y~F~V~~~anK~eIK~aVE~--lf~VkV~~VNT~~~~gK~k 63 (95)
T 2zjr_Q 25 YSFWVSPKATKTEIKDAIQQ--AFGVRVIGISTMNVPGKRK 63 (95)
T ss_dssp CEEEECSSCTHHHHHHHHHH--HHCCCCSEEEECCBCCCCC
T ss_pred EEEEEcCCCCHHHHHHHHHH--HhCCCceEEEeEEeCCccc
Confidence 78999999999999999999 8899988854 46777543
No 199
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=23.21 E-value=1.2e+02 Score=26.52 Aligned_cols=47 Identities=17% Similarity=0.192 Sum_probs=38.6
Q ss_pred CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCC-CCceEEEe
Q 032742 8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLP-IENLRLVF 57 (135)
Q Consensus 8 ~~m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip-~~~QRLI~ 57 (135)
..|.+.|...++.. ..+.|++.+|+.+|=..|+. ..|+. .+-.-|.+
T Consensus 262 ~~i~~~V~llDgt~-~~~~vds~Tt~~ell~~V~~--~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 262 KPIMLPVTFMDGTT-KTLLTDSATTARELCNALAD--KISLKDRFGFSLYI 309 (655)
T ss_dssp CCEEEEEEETTSCE-EEEEECTTCBHHHHHHHHHH--HTTCSSCTTEEEEE
T ss_pred CceEEEEEecCCce-EEEEEccCCcHHHHHHHHHH--HcCCcccccceeEE
Confidence 46889999999976 88999999999999999988 88864 44466655
No 200
>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.168.1.1
Probab=22.23 E-value=63 Score=23.12 Aligned_cols=67 Identities=19% Similarity=0.300 Sum_probs=46.3
Q ss_pred CcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCC-CCCCEEEEEecCCCCCccccCCCC
Q 032742 31 IKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQL-SNGDSVIAAVKPKPPPRHLRDDTC 102 (135)
Q Consensus 31 ~TV~dLK~~Ia~~~~~~ip~~~QRLI~~Gk~L~D~~t~d~~~L~~~~I-~dG~tIlv~~~p~~~~~~~~~~~~ 102 (135)
++=+.|..-++....+-+..+||+|=.+|..=...+. +.+..+ -|+|+|++++.|.-|+=|.-..+|
T Consensus 42 MN~EAl~~Tl~tg~~~y~SRSR~~LW~KGetSG~~Q~-----v~~i~~DCD~D~LL~~V~q~G~aCHtG~~SC 109 (138)
T 1zps_A 42 MNREALRRTLETGTAHYWSTSRGKLWLKGESSGHVQR-----VKDVLVDCDGDAVVLKVEQEGGACHTGYRSC 109 (138)
T ss_dssp ECHHHHHHHHHHSBCEEEETTTTEEEETTTTTSCCEE-----EEEEEECTTSSEEEEEEEESSCSSTTSBSSS
T ss_pred cCHHHHHHHHhcCcEEEEcCCCCccccCccCCCCcEE-----EEEEEecCCCCEEEEEEEecCCcccCCCCCc
Confidence 5667888888773333366888999999976655444 544444 579999888887766666664443
No 201
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=22.18 E-value=1.5e+02 Score=21.97 Aligned_cols=40 Identities=15% Similarity=0.124 Sum_probs=30.0
Q ss_pred eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCc
Q 032742 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN 52 (135)
Q Consensus 10 m~I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~ 52 (135)
+.|.|-+.++.. ..+.|++..|..+|-+.+.. +.+++.+.
T Consensus 35 ~~v~v~~~d~~~-k~i~v~~~~ta~ev~~~L~~--k~~~~~~~ 74 (291)
T 3tca_A 35 LVVKVHMDDSST-KSLMVDERQLARDVLDNLFE--KTHCDCNV 74 (291)
T ss_dssp EEEEEECTTSCE-EEEEEETTCBHHHHHHHHHH--HHCCCCCT
T ss_pred eEEEEEcCCCce-EEEEeCCCCcHHHHHHHHHH--HhCCCCCC
Confidence 445555555543 67999999999999999988 88876543
No 202
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=21.15 E-value=1.7e+02 Score=24.82 Aligned_cols=45 Identities=13% Similarity=0.103 Sum_probs=36.0
Q ss_pred eEEEEEeC--CCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE
Q 032742 10 VEITVKTI--GPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV 56 (135)
Q Consensus 10 m~I~VKt~--~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~~ip~~~QRLI 56 (135)
+.|.++-. .....+.++++...|-.+|-++|++ ..+++|...|+.
T Consensus 240 v~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~--~l~~dP~~lRf~ 286 (530)
T 2ylm_A 240 VDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQ--RLNTDPMLLQFF 286 (530)
T ss_dssp EEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHH--HHTSCGGGEEEE
T ss_pred eEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHH--HhCCCchhEEEE
Confidence 55666642 2233388999999999999999999 889999999875
No 203
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=20.62 E-value=1.9e+02 Score=18.90 Aligned_cols=66 Identities=11% Similarity=-0.021 Sum_probs=51.1
Q ss_pred EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCC-C--C--CCC-ceEEEecC--eecCCCCCCCCCCccccCCCCCCE
Q 032742 12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSAN-H--L--PIE-NLRLVFRG--KVLDDTQDDDDRDDVYLQLSNGDS 83 (135)
Q Consensus 12 I~VKt~~~~~~~~i~v~~~~TV~dLK~~Ia~~~~~-~--i--p~~-~QRLI~~G--k~L~D~~t~d~~~L~~~~I~dG~t 83 (135)
|.-+..+....+-+.|+.+.|+.++=++++. .. | + .|. -.|..++| ..++.+.+ +.+.+|.+-+.
T Consensus 4 l~~~F~gDFV~~LV~VDt~dTmdqVA~kvA~--HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~t-----vae~gl~P~e~ 76 (83)
T 2inc_C 4 IMSNFERDFVIQLVPVDTEDTMDQVAEKCAY--HSINRRVHPQPEKILRVRRHEDGTLFPRGMI-----VSDAGLRPTET 76 (83)
T ss_dssp EEEEETTCSBEEEEEECTTCBHHHHHHHHHT--TTBTTTBCCCTTSEEEEEETTTCCEECTTCB-----GGGSCCCTTCE
T ss_pred eeEEeccccEEEEEEecCCCcHHHHHHHHhh--hhcceecCCCCCCeEEEEecCCccCCCCCCE-----eeccCCCCceE
Confidence 4445555655456899999999999999986 33 2 2 233 47888999 88999888 99999999998
Q ss_pred E
Q 032742 84 V 84 (135)
Q Consensus 84 I 84 (135)
|
T Consensus 77 v 77 (83)
T 2inc_C 77 L 77 (83)
T ss_dssp E
T ss_pred E
Confidence 8
Done!