BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032743
         (134 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And
           Group-1 Pollen Allergen From Maize
          Length = 245

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 7/120 (5%)

Query: 15  GVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACK 74
           G++DVE+RRV C YP     +   EK   P+YL  ++ Y     DI  +++ +  +   K
Sbjct: 129 GIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWK 188

Query: 75  LLDRSHGAVWT--TTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTGVQ 132
            +  S GA+W   T     GP S+R+  + E G     V+  + IP +W+    Y + VQ
Sbjct: 189 PMKLSWGAIWRMDTAKALKGPFSIRL--TSESGKK---VIAKDVIPANWRPDAVYTSNVQ 243


>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
           Allergen
 pdb|1N10|B Chain B, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
           Allergen
          Length = 241

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 7/117 (5%)

Query: 15  GVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACK 74
           G +++++RRV C YP         EK   P+YL  ++ Y  G  D+ AV + E       
Sbjct: 129 GELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEKGKDKWI 188

Query: 75  LLDRSHGAVWTTTSPP--SGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDT 129
            L  S GA+W   +P   +GP ++R  ++ E G   +     + IP+ WKA  +Y++
Sbjct: 189 ELKESWGAIWRIDTPDKLTGPFTVR--YTTEGG---TKTEAEDVIPEGWKADTSYES 240


>pdb|1LUR|A Chain A, Crystal Structure Of The GalmALDOSE EPIMERASE HOMOLOGUE
           From C. Elegans, Northeast Structural Genomics Target
           Wr66
 pdb|1LUR|B Chain B, Crystal Structure Of The GalmALDOSE EPIMERASE HOMOLOGUE
           From C. Elegans, Northeast Structural Genomics Target
           Wr66
          Length = 339

 Score = 28.1 bits (61), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 24/42 (57%)

Query: 64  QLCETKNFACKLLDRSHGAVWTTTSPPSGPLSLRMFFSDEDG 105
           QL E+   A +LLD  +  V T  +PPS P +   F+S++ G
Sbjct: 223 QLKESGKDAEELLDLDNDLVITKKTPPSTPSTYLRFWSEKSG 264


>pdb|1MKF|A Chain A, Viral Chemokine Binding Protein M3 From Murine
           Gammaherpesvirus 68
 pdb|1MKF|B Chain B, Viral Chemokine Binding Protein M3 From Murine
           Gammaherpesvirus 68
 pdb|1ML0|A Chain A, Viral Chemokine Binding Protein M3 From Murine
           Gammaherpesvirus68 In Complex With The P8a Variant Of
           Cc-Chemokine Mcp-1
 pdb|2NYZ|A Chain A, Viral Chemokine Binding Protein M3 From Murine
           Gammaherpesvirus68 In Complex With The C- Chemokine Xcl1
 pdb|2NYZ|B Chain B, Viral Chemokine Binding Protein M3 From Murine
           Gammaherpesvirus68 In Complex With The C- Chemokine Xcl1
 pdb|2NZ1|A Chain A, Viral Chemokine Binding Protein M3 From Murine
           Gammaherpesvirus68 In Complex With The Cc-Chemokine
           Ccl2MCP-1
 pdb|2NZ1|B Chain B, Viral Chemokine Binding Protein M3 From Murine
           Gammaherpesvirus68 In Complex With The Cc-Chemokine
           Ccl2MCP-1
 pdb|2NZ1|X Chain X, Viral Chemokine Binding Protein M3 From Murine
           Gammaherpesvirus68 In Complex With The Cc-Chemokine
           Ccl2MCP-1
          Length = 382

 Score = 25.8 bits (55), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 68  TKNFACKLLDRSHGAVWTTTSPPSGPLSL 96
           +K + C L   SH  VWT+TS    P+ L
Sbjct: 313 SKLYHCALQMTSHDGVWTSTSSEQCPIRL 341


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.134    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,431,133
Number of Sequences: 62578
Number of extensions: 172153
Number of successful extensions: 344
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 338
Number of HSP's gapped (non-prelim): 9
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)