Query 032743
Match_columns 134
No_of_seqs 110 out of 603
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 05:23:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032743.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032743hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03023 Expansin-like B1; Pro 100.0 2.2E-47 4.8E-52 306.5 16.4 131 1-134 117-247 (247)
2 PLN00193 expansin-A; Provision 100.0 4.6E-44 9.9E-49 288.5 15.7 123 1-133 133-256 (256)
3 PLN00050 expansin A; Provision 100.0 4.2E-43 9.1E-48 281.8 15.3 122 1-133 125-247 (247)
4 PLN00115 pollen allergen group 100.0 9.2E-37 2E-41 221.6 9.0 109 11-133 7-118 (118)
5 PF01357 Pollen_allerg_1: Poll 100.0 1.4E-32 3E-37 188.0 9.9 80 33-118 1-82 (82)
6 COG4305 Endoglucanase C-termin 99.4 4.7E-12 1E-16 98.1 11.7 121 1-134 107-231 (232)
7 PF03404 Mo-co_dimer: Mo-co ox 74.7 5.5 0.00012 29.1 4.0 23 55-77 37-60 (131)
8 PF10417 1-cysPrx_C: C-termina 71.7 2.3 5E-05 25.1 1.1 10 116-125 11-20 (40)
9 cd02110 SO_family_Moco_dimer S 65.0 22 0.00047 29.6 6.1 49 55-103 233-291 (317)
10 cd02854 Glycogen_branching_enz 64.0 16 0.00035 25.3 4.3 29 75-103 34-72 (99)
11 PLN00177 sulfite oxidase; Prov 58.1 21 0.00045 30.9 4.9 48 55-102 293-357 (393)
12 cd02114 bact_SorA_Moco sulfite 52.5 52 0.0011 28.1 6.4 48 55-102 285-340 (367)
13 cd02113 bact_SoxC_Moco bacteri 48.5 41 0.0009 28.3 5.1 49 55-103 235-290 (326)
14 PRK10564 maltose regulon perip 48.4 81 0.0018 26.6 6.7 78 19-133 48-127 (303)
15 PF06483 ChiC: Chitinase C; I 36.0 79 0.0017 24.8 4.5 44 53-101 107-155 (180)
16 PF02922 CBM_48: Carbohydrate- 35.7 80 0.0017 20.1 4.0 30 74-103 40-75 (85)
17 TIGR02588 conserved hypothetic 34.2 64 0.0014 23.7 3.6 24 44-68 50-73 (122)
18 cd02112 eukary_NR_Moco molybdo 32.0 1.1E+02 0.0023 26.5 5.1 44 59-102 301-359 (386)
19 cd07048 BMC_PduB_repeat2 1,2-p 28.7 1.1E+02 0.0023 20.3 3.6 30 8-38 17-49 (70)
20 cd02859 AMPKbeta_GBD_like AMP- 27.9 1.8E+02 0.0038 18.9 5.7 54 49-113 4-61 (79)
21 PF04620 FlaA: Flagellar filam 24.4 2.4E+02 0.0052 22.5 5.6 43 32-77 109-151 (217)
22 KOG0852 Alkyl hydroperoxide re 24.2 37 0.0008 26.8 0.9 11 115-125 168-178 (196)
23 cd08544 Reeler Reeler, the N-t 24.2 2.6E+02 0.0057 19.7 6.4 74 28-102 31-120 (135)
24 PF08482 HrpB_C: ATP-dependent 22.0 1.4E+02 0.003 22.1 3.6 68 32-122 41-110 (133)
25 COG5297 CelA Cellobiohydrolase 21.6 2E+02 0.0044 25.5 5.0 54 30-88 461-516 (544)
26 PF02014 Reeler: Reeler domain 21.4 2.9E+02 0.0064 19.4 5.1 75 27-102 30-124 (132)
27 KOG4192 Uncharacterized conser 21.0 1.6E+02 0.0034 21.9 3.6 51 24-78 74-124 (134)
No 1
>PLN03023 Expansin-like B1; Provisional
Probab=100.00 E-value=2.2e-47 Score=306.47 Aligned_cols=131 Identities=42% Similarity=0.806 Sum_probs=117.6
Q ss_pred CCccHHHHHhhhhCceeeEEEEEEeeCCCCcceEEEEccCCCCCceEEEEEEEecCccceEEEEEEecCCcceEecccCC
Q 032743 1 MAQTTDAAAALLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSH 80 (134)
Q Consensus 1 ma~~~~~~~~~~~~Giv~v~yrrV~C~~~G~~i~f~V~~gS~~~~~l~vli~nv~G~gdI~~Vevk~~g~~~W~~M~r~~ 80 (134)
||+|+ ++++|+++|+|||+||||||.++|+||+|+|+++|++|+||+|+|+|++|+|||++||||++++++|++|+|+|
T Consensus 117 iA~pg-~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s~~p~yl~vlv~~vgG~GdI~~V~Ik~~~~~~W~~M~rnw 195 (247)
T PLN03023 117 LARPN-MAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYLAIVMLYQAGQNDILAVEIWQEDCKEWRGMRKAY 195 (247)
T ss_pred HhCcc-ccchhccCcEEEeEEEEEecccCCCceEEEEecCCCCCceEEEEEEEcCCCccEEEEEEEecCCCCceECccCC
Confidence 44444 24556999999999999999999999999999999669999999999999999999999998888999999999
Q ss_pred CCeeeeCCCCCCCeEEEEEEecCCCCcceEEEeccccCCCCcCCcEEeCCCCCC
Q 032743 81 GAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTGVQVN 134 (134)
Q Consensus 81 Ga~W~~~~~l~gpls~Rvt~~~G~~~~~~~vv~~~viP~~w~~G~tY~s~~qf~ 134 (134)
||+|+++++|+|||+||++++.+ ++.++++++||||++|++|+||++++||+
T Consensus 196 Ga~W~~~~~l~Gp~slrf~v~~~--~g~~~vva~nViPa~Wk~G~TY~s~vq~~ 247 (247)
T PLN03023 196 GAVWDMPNPPKGPITLRFQVSGS--AGQTWVQAKNVIPSDWKAGVAYDSNIQLD 247 (247)
T ss_pred cceeEcCCCCCCceeEEEEEEeC--CCcEEEEECceeCCCCCCCCEEecccccC
Confidence 99999999999999999988754 22255999999999999999999999995
No 2
>PLN00193 expansin-A; Provisional
Probab=100.00 E-value=4.6e-44 Score=288.55 Aligned_cols=123 Identities=24% Similarity=0.387 Sum_probs=118.1
Q ss_pred CCccHHHHHhhhhCceeeEEEEEEeeCCCCcceEEEEccCCCCCceEEEEEEEecCccceEEEEEEecCCcceEecccCC
Q 032743 1 MAQTTDAAAALLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSH 80 (134)
Q Consensus 1 ma~~~~~~~~~~~~Giv~v~yrrV~C~~~G~~i~f~V~~gS~~~~~l~vli~nv~G~gdI~~Vevk~~g~~~W~~M~r~~ 80 (134)
|++++|.+++.+++|+|||+||||||.++| +|+|+|++ |+||++|+|+|++|+|||++|+||+++ ++|++|+|+|
T Consensus 133 LS~~AF~~iA~~~~Giv~V~yrRVpC~~~G-~i~f~v~g---n~y~~~vlv~nv~G~gdV~~v~Ik~~~-~~W~~M~R~w 207 (256)
T PLN00193 133 MAQPAWEKIGIYRGGIVPVLFQRVPCKKHG-GVRFTING---RDYFELVLISNVGGAGSIQSVSIKGSK-TGWMAMSRNW 207 (256)
T ss_pred cCHHHHHHHhhhcCCeEeEEEEEeccccCC-CcEEEEcC---CccEEEEEEEEeCCCccEEEEEEecCC-CCeeECcccc
Confidence 789999999999999999999999999999 99999997 799999999999999999999999875 5899999999
Q ss_pred CCeeeeCCCCCC-CeEEEEEEecCCCCcceEEEeccccCCCCcCCcEEeCCCCC
Q 032743 81 GAVWTTTSPPSG-PLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTGVQV 133 (134)
Q Consensus 81 Ga~W~~~~~l~g-pls~Rvt~~~G~~~~~~~vv~~~viP~~w~~G~tY~s~~qf 133 (134)
||+|+++++|.| |||||||+++| +++++.||||++|+||+||++.+||
T Consensus 208 Ga~W~~~~~l~g~plsfRvts~~G-----~~~~~~~viPa~W~~G~ty~s~vqf 256 (256)
T PLN00193 208 GANWQSNAYLDGQSLSFKVTTTDG-----QTRFFLNVVPANWGFGQTFSSSVQF 256 (256)
T ss_pred cceeEecCCCCCCCEEEEEEEcCC-----eEEEECceeCCCCCCCCeEecCccC
Confidence 999999998888 99999999988 9999999999999999999999998
No 3
>PLN00050 expansin A; Provisional
Probab=100.00 E-value=4.2e-43 Score=281.81 Aligned_cols=122 Identities=30% Similarity=0.431 Sum_probs=116.2
Q ss_pred CCccHHHHHhhhhCceeeEEEEEEeeCCCCcceEEEEccCCCCCceEEEEEEEecCccceEEEEEEecCCcceEecccCC
Q 032743 1 MAQTTDAAAALLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSH 80 (134)
Q Consensus 1 ma~~~~~~~~~~~~Giv~v~yrrV~C~~~G~~i~f~V~~gS~~~~~l~vli~nv~G~gdI~~Vevk~~g~~~W~~M~r~~ 80 (134)
|+.++|.+++.+++|+|||+||||||.++| ||+|+|++ ++||++|+|+|++|+|||++|+||+++ ++|++|+|+|
T Consensus 125 LS~~AF~~iA~~~aGii~V~yRRVpC~~~G-~i~f~v~g---~sy~~~vlv~nv~G~gdi~~V~ikg~~-~~W~~M~R~w 199 (247)
T PLN00050 125 LSQPVFQKIAQYKAGIVPVQYRRVACRKSG-GIRFTING---HSYFNLVLITNVGGAGDIVAVSIKGSK-SNWQAMSRNW 199 (247)
T ss_pred cCHHHHHHHhhhcCCeeeeEEEEecCcCCC-CeEEEEcC---CceeEEEEEEEcCCCccEEEEEEecCC-CCeeECcccc
Confidence 788999999999999999999999999999 99999998 679999999999999999999999874 6899999999
Q ss_pred CCeeeeCCCCCC-CeEEEEEEecCCCCcceEEEeccccCCCCcCCcEEeCCCCC
Q 032743 81 GAVWTTTSPPSG-PLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTGVQV 133 (134)
Q Consensus 81 Ga~W~~~~~l~g-pls~Rvt~~~G~~~~~~~vv~~~viP~~w~~G~tY~s~~qf 133 (134)
||+|+++++|.| |||||||+++| +++++.||||++|+||+||++. ||
T Consensus 200 Ga~W~~~~~l~g~~lsfRvt~~~G-----~~~~~~~V~Pa~W~~G~ty~~~-~f 247 (247)
T PLN00050 200 GQNWQSNSYLNGQALSFKVTTSDG-----RTVISNNAAPSNWAFGQTYTGM-QF 247 (247)
T ss_pred CceeEccCCCCCCcEEEEEEecCC-----cEEEECceeCCCCCCCCeEecC-cC
Confidence 999999998878 99999999888 9999999999999999999994 88
No 4
>PLN00115 pollen allergen group 3; Provisional
Probab=100.00 E-value=9.2e-37 Score=221.58 Aligned_cols=109 Identities=30% Similarity=0.448 Sum_probs=95.0
Q ss_pred hhhCceeeEEEEEEeeCCCCcceEEEEccCCCCCceEEEEEEEecCccceEEEEEEecCCcceE-ecccCCCCeeeeCC-
Q 032743 11 LLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACK-LLDRSHGAVWTTTS- 88 (134)
Q Consensus 11 ~~~~Giv~v~yrrV~C~~~G~~i~f~V~~gS~~~~~l~vli~nv~G~gdI~~Vevk~~g~~~W~-~M~r~~Ga~W~~~~- 88 (134)
|+..-.+.-.|.--.| |++|+|+|+++| ||+||++++ | +||.+||||++|+.+|+ +|+|+|||+|++++
T Consensus 7 ~~~~~~~a~l~~~~~~---g~~v~F~V~~gS-np~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~ 77 (118)
T PLN00115 7 LLLAVALAALFAVGSC---ATEVTFKVGKGS-SSTSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSK 77 (118)
T ss_pred HHHHHHHHHHhhhhhc---CCceEEEECCCC-CcceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCC
Confidence 4444445555666689 479999999999 699997665 3 57999999999888999 99999999999765
Q ss_pred -CCCCCeEEEEEEecCCCCcceEEEeccccCCCCcCCcEEeCCCCC
Q 032743 89 -PPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTGVQV 133 (134)
Q Consensus 89 -~l~gpls~Rvt~~~G~~~~~~~vv~~~viP~~w~~G~tY~s~~qf 133 (134)
||+||||||+++++| ++++++||||++|+||+||++++||
T Consensus 78 ~pl~GPlS~R~t~~~G-----~~~va~nViPa~Wk~G~tY~s~vq~ 118 (118)
T PLN00115 78 APLKGPFSVRFLVKGG-----GYRVVDDVIPESFKAGSVYKTGIQV 118 (118)
T ss_pred CCCCCceEEEEEEeCC-----CEEEECceECCCCCCCCEEeccccC
Confidence 799999999999888 9999999999999999999999997
No 5
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=100.00 E-value=1.4e-32 Score=187.98 Aligned_cols=80 Identities=35% Similarity=0.539 Sum_probs=68.9
Q ss_pred eEEEEccCCCCCceEEEEEEEecCccceEEEEEEecCCcceEecccCCCCeeeeC-CCCCCCeEEEEEEec-CCCCcceE
Q 032743 33 ITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSHGAVWTTT-SPPSGPLSLRMFFSD-EDGDDESW 110 (134)
Q Consensus 33 i~f~V~~gS~~~~~l~vli~nv~G~gdI~~Vevk~~g~~~W~~M~r~~Ga~W~~~-~~l~gpls~Rvt~~~-G~~~~~~~ 110 (134)
|+|+|+++| |||||+|+|+|++|+|||++||||++++.+|++|+|+|||+|+++ .++++|||||||+.+ | ++
T Consensus 1 v~f~V~~gS-~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~~pls~Rvts~~~G-----~~ 74 (82)
T PF01357_consen 1 VRFTVKGGS-NPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPGGPLSFRVTSGDSG-----QT 74 (82)
T ss_dssp EEEEE-TT--BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS--SSEEEEEEETTTS-----EE
T ss_pred CEEEECCCC-CCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcCCCEEEEEEEcCCC-----eE
Confidence 789999999 699999999999999999999999999889999999999999998 789999999999966 6 99
Q ss_pred EEeccccC
Q 032743 111 VVPVNNIP 118 (134)
Q Consensus 111 vv~~~viP 118 (134)
++++||||
T Consensus 75 vv~~nViP 82 (82)
T PF01357_consen 75 VVADNVIP 82 (82)
T ss_dssp EEEEEEE-
T ss_pred EEEecccC
Confidence 99999999
No 6
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.40 E-value=4.7e-12 Score=98.12 Aligned_cols=121 Identities=18% Similarity=0.227 Sum_probs=96.0
Q ss_pred CCccHHHHHhhhhCceeeEEEEEEeeCCCCcceEEEEccCCCCCceEEEEEEEecCccceEEEEEEecCCcceEecccCC
Q 032743 1 MAQTTDAAAALLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSH 80 (134)
Q Consensus 1 ma~~~~~~~~~~~~Giv~v~yrrV~C~~~G~~i~f~V~~gS~~~~~l~vli~nv~G~gdI~~Vevk~~g~~~W~~M~r~~ 80 (134)
|+..+|.++-..+.|.|||+||-|+....| |+.++|++||+ .+|.+++|.|+. =.+..+|+.+.| .|..|.+.-
T Consensus 107 LSpNAFakIGnm~qGrIpvqWrvv~aPvtG-N~~YRiKeGSs-~WWAAIQVRnH~--yPV~KlE~~qdg--~WinlpK~d 180 (232)
T COG4305 107 LSPNAFAKIGNMKQGRIPVQWRVVKAPVTG-NFTYRIKEGSS-RWWAAIQVRNHK--YPVMKLEYEQDG--KWINLPKMD 180 (232)
T ss_pred cChHHHhhhcchhcCccceeEEEecccccc-cEEEEEecCCc-cceeeeeeeccc--CceEEEEEecCC--eEeeccccc
Confidence 566789899999999999999999999999 99999999995 999999999986 579999999874 899998876
Q ss_pred CCeeeeCCCCCCCeEEEEEEecCCCCcceEEEeccccCCCCcCC--cEEe--CCCCCC
Q 032743 81 GAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAG--ETYD--TGVQVN 134 (134)
Q Consensus 81 Ga~W~~~~~l~gpls~Rvt~~~G~~~~~~~vv~~~viP~~w~~G--~tY~--s~~qf~ 134 (134)
.+.+--.+.-.+||++|+|+-.| +.++ |-+|.-=+.+ +.|. ..+||+
T Consensus 181 YNhFVgT~LG~~pL~~RmTDIRG-----~~l~--DtlP~Lpk~asSKaY~V~G~VQFs 231 (232)
T COG4305 181 YNHFVGTNLGTGPLKVRMTDIRG-----KVLK--DTLPKLPKSASSKAYTVPGHVQFS 231 (232)
T ss_pred cceeeccccCCCceEEEEeeccc-----ceee--cccccccccccCCceeecceeecC
Confidence 66555555567899999999887 6554 3455433322 2232 456774
No 7
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=74.66 E-value=5.5 Score=29.08 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=16.7
Q ss_pred cCcc-ceEEEEEEecCCcceEecc
Q 032743 55 QGKK-DITAVQLCETKNFACKLLD 77 (134)
Q Consensus 55 ~G~g-dI~~Vevk~~g~~~W~~M~ 77 (134)
+|.| .|.+|||.-.++..|.+-.
T Consensus 37 ~g~g~~I~rVEVS~DgG~tW~~A~ 60 (131)
T PF03404_consen 37 SGGGRGIARVEVSTDGGKTWQEAT 60 (131)
T ss_dssp -STT--EEEEEEESSTTSSEEE-E
T ss_pred eCCCcceEEEEEEeCCCCCcEEeE
Confidence 4556 8999999998888897743
No 8
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=71.70 E-value=2.3 Score=25.07 Aligned_cols=10 Identities=40% Similarity=1.189 Sum_probs=9.0
Q ss_pred ccCCCCcCCc
Q 032743 116 NIPQDWKAGE 125 (134)
Q Consensus 116 viP~~w~~G~ 125 (134)
+.|+||++|.
T Consensus 11 ~tPanW~pGd 20 (40)
T PF10417_consen 11 ATPANWKPGD 20 (40)
T ss_dssp BBCTTTCTTS
T ss_pred ccCcCCCCCC
Confidence 7999999986
No 9
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=64.98 E-value=22 Score=29.61 Aligned_cols=49 Identities=18% Similarity=0.178 Sum_probs=31.2
Q ss_pred cCccceEEEEEEecCCcceEecccCCC-------CeeeeCC-CCCCCeEE--EEEEecC
Q 032743 55 QGKKDITAVQLCETKNFACKLLDRSHG-------AVWTTTS-PPSGPLSL--RMFFSDE 103 (134)
Q Consensus 55 ~G~gdI~~Vevk~~g~~~W~~M~r~~G-------a~W~~~~-~l~gpls~--Rvt~~~G 103 (134)
+|.+.|.+|||.-.|+..|++..-.-. ..|++.- +..|...| |.++++|
T Consensus 233 ~g~~~I~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~~~~G~~~l~vRA~D~~g 291 (317)
T cd02110 233 SGGRGIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWDLPPGEYELVARATDSTG 291 (317)
T ss_pred cCCCCEEEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEEcCCCcEEEEEEEECCCC
Confidence 344579999999998879988644321 2555553 34676555 5555544
No 10
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=64.01 E-value=16 Score=25.27 Aligned_cols=29 Identities=31% Similarity=0.591 Sum_probs=22.0
Q ss_pred ecccCCCCeeeeCCCC---------CC-CeEEEEEEecC
Q 032743 75 LLDRSHGAVWTTTSPP---------SG-PLSLRMFFSDE 103 (134)
Q Consensus 75 ~M~r~~Ga~W~~~~~l---------~g-pls~Rvt~~~G 103 (134)
+|.+.-..+|++.-++ .| .+.|||+..+|
T Consensus 34 ~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G 72 (99)
T cd02854 34 PLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSG 72 (99)
T ss_pred ccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCC
Confidence 4888766799876442 66 79999998776
No 11
>PLN00177 sulfite oxidase; Provisional
Probab=58.09 E-value=21 Score=30.88 Aligned_cols=48 Identities=13% Similarity=0.090 Sum_probs=29.7
Q ss_pred cCccceEEEEEEecCCcceEeccc----------------CCC-CeeeeCCCCCCCeEEEEEEec
Q 032743 55 QGKKDITAVQLCETKNFACKLLDR----------------SHG-AVWTTTSPPSGPLSLRMFFSD 102 (134)
Q Consensus 55 ~G~gdI~~Vevk~~g~~~W~~M~r----------------~~G-a~W~~~~~l~gpls~Rvt~~~ 102 (134)
||...|.+|||.-.|+..|+.-.. .|- ..|++.-++.|...|.+...|
T Consensus 293 ggg~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~~~~~~~~~~aW~~w~~~~~~~g~~~l~~RA~D 357 (393)
T PLN00177 293 GGGRGIERVDISVDGGKTWVEASRYQKPGVPYISDDISSDKWAWVLFEATVDVPQSTEIVAKAVD 357 (393)
T ss_pred CCCccEEEEEEEcCCCCCceeeeeccccccccccccccCCccEEEEEEEEecCCCCeEEEEEEEc
Confidence 343369999999998888986532 120 234444456677666555544
No 12
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=52.48 E-value=52 Score=28.10 Aligned_cols=48 Identities=21% Similarity=0.292 Sum_probs=30.9
Q ss_pred cCccceEEEEEEecCCcceEec--ccCCCC----eeeeCC-C-CCCCeEEEEEEec
Q 032743 55 QGKKDITAVQLCETKNFACKLL--DRSHGA----VWTTTS-P-PSGPLSLRMFFSD 102 (134)
Q Consensus 55 ~G~gdI~~Vevk~~g~~~W~~M--~r~~Ga----~W~~~~-~-l~gpls~Rvt~~~ 102 (134)
+|.+.|++|||.-.|+..|++- ....+. .|++.- + ..|.+.|.+...|
T Consensus 285 ~G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~W~~~~~~~~~G~~~l~~RA~D 340 (367)
T cd02114 285 DGGSGIRRVDVSADGGDSWTQATLGPDLGRFSFRGWKLTLDGVKKGPLTLMVRATN 340 (367)
T ss_pred cCCCCEEEEEEEeCCCCcceEeEeCCCCCCcEEEEEEEEEECCCCCcEEEEEEEEc
Confidence 4556799999999988889874 332332 355542 2 3687766555544
No 13
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=48.50 E-value=41 Score=28.33 Aligned_cols=49 Identities=14% Similarity=0.038 Sum_probs=29.0
Q ss_pred cCccceEEEEEEecCCcceEecccC--CC----CeeeeC-CCCCCCeEEEEEEecC
Q 032743 55 QGKKDITAVQLCETKNFACKLLDRS--HG----AVWTTT-SPPSGPLSLRMFFSDE 103 (134)
Q Consensus 55 ~G~gdI~~Vevk~~g~~~W~~M~r~--~G----a~W~~~-~~l~gpls~Rvt~~~G 103 (134)
+|.+.|.+|||.-.|+..|+.-.-. -+ ..|+.. .+..|+..|.....|+
T Consensus 235 sG~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~w~~~w~~~~g~~~i~~RA~D~ 290 (326)
T cd02113 235 SGRGRIRRVDVSFDGGRTWQDARLEGPVLPKALTRFRLPWKWDGRPAVLQSRATDE 290 (326)
T ss_pred CCCCCEEEEEEEcCCCCCceECccCCCCCCCceEEEeEEEEcCCCeEEEEEEEEcC
Confidence 4566799999999987789874331 11 123332 2345666665544443
No 14
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=48.41 E-value=81 Score=26.59 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=48.0
Q ss_pred EEEEEEeeCCCCcceEEEEccCCCCCceEEEEEEEecCccceEEEEEEecCCcceEecccCCCCeeeeCCCCCCCeEEEE
Q 032743 19 VEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSHGAVWTTTSPPSGPLSLRM 98 (134)
Q Consensus 19 v~yrrV~C~~~G~~i~f~V~~gS~~~~~l~vli~nv~G~gdI~~Vevk~~g~~~W~~M~r~~Ga~W~~~~~l~gpls~Rv 98 (134)
++|..+. .+. .+.|.+++.|. .+ .+-+|.+-|.+.+|-. -.|+|+|+|
T Consensus 48 l~wq~l~--~~~-~~~~~L~~~sq--~~-----~f~~~~s~vAAf~lPa----------------------n~G~l~i~L 95 (303)
T PRK10564 48 LTWQPVD--QSK-TQTTQLATGGQ--QL-----NVAGISGPVAAYSLPA----------------------NIGELTLTL 95 (303)
T ss_pred CCceEcc--CCC-ceEEEeCCCCc--ce-----ecCCCcccEEEEEccc----------------------ccccEEEEE
Confidence 4554443 344 77888888663 22 3344555555544422 257899999
Q ss_pred EEecCCCCcceEEEecc--ccCCCCcCCcEEeCCCCC
Q 032743 99 FFSDEDGDDESWVVPVN--NIPQDWKAGETYDTGVQV 133 (134)
Q Consensus 99 t~~~G~~~~~~~vv~~~--viP~~w~~G~tY~s~~qf 133 (134)
+|--. .+.+.+-+ ++-++|++=.+|.+. .|
T Consensus 96 sS~v~----~~~VfaPnVlvLD~~~~~~~~y~s~-~F 127 (303)
T PRK10564 96 SSLVN----DKSVFAPNVLVLDQNMRPAAFYPSS-YF 127 (303)
T ss_pred EEEec----CCcEEeceEEEEcCCCCEEEEeccc-ce
Confidence 99321 04676666 678899998888774 55
No 15
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=36.01 E-value=79 Score=24.76 Aligned_cols=44 Identities=27% Similarity=0.273 Sum_probs=34.5
Q ss_pred EecC-ccceEEEEEEecCCcceEecccCCCCeeeeCC----CCCCCeEEEEEEe
Q 032743 53 YQQG-KKDITAVQLCETKNFACKLLDRSHGAVWTTTS----PPSGPLSLRMFFS 101 (134)
Q Consensus 53 nv~G-~gdI~~Vevk~~g~~~W~~M~r~~Ga~W~~~~----~l~gpls~Rvt~~ 101 (134)
|+|| .+|...|.++- ..|+.+.- |+..+++- |..||-.++|+..
T Consensus 107 NiGGL~gdfHrvs~tl---p~wqslap--G~s~~~~~~YyLPiSgPsN~tv~~~ 155 (180)
T PF06483_consen 107 NIGGLKGDFHRVSFTL---PAWQSLAP--GASVELDMVYYLPISGPSNFTVNIG 155 (180)
T ss_pred cccccCCceEEEEEEC---CCccccCC--CCEEEEeEEEEeccCCCceEEEEEC
Confidence 5666 68999999985 37888875 78888763 6788999999864
No 16
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=35.68 E-value=80 Score=20.13 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=20.6
Q ss_pred Eecc-cCCCCeeeeCCC--CC--C-CeEEEEEEecC
Q 032743 74 KLLD-RSHGAVWTTTSP--PS--G-PLSLRMFFSDE 103 (134)
Q Consensus 74 ~~M~-r~~Ga~W~~~~~--l~--g-pls~Rvt~~~G 103 (134)
.+|+ +.-+.+|++.-+ ++ + -+.+||...+|
T Consensus 40 ~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~g 75 (85)
T PF02922_consen 40 YPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDDG 75 (85)
T ss_dssp EEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETTT
T ss_pred EEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCCC
Confidence 5677 466778987543 44 3 68888887764
No 17
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=34.17 E-value=64 Score=23.71 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.1
Q ss_pred CceEEEEEEEecCccceEEEEEEec
Q 032743 44 PHYLGFVIWYQQGKKDITAVQLCET 68 (134)
Q Consensus 44 ~~~l~vli~nv~G~gdI~~Vevk~~ 68 (134)
.||.-+.|.|-||. ..++|+|++.
T Consensus 50 qyyVpF~V~N~gg~-TAasV~V~ge 73 (122)
T TIGR02588 50 QYYVPFAIHNLGGT-TAAAVNIRGE 73 (122)
T ss_pred EEEEEEEEEeCCCc-EEEEEEEEEE
Confidence 69999999999886 6899999875
No 18
>cd02112 eukary_NR_Moco molybdopterin binding domain of eukaryotic nitrate reductase (NR). Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=32.03 E-value=1.1e+02 Score=26.46 Aligned_cols=44 Identities=18% Similarity=0.247 Sum_probs=27.5
Q ss_pred ceEEEEEEecCCcceEecccC--C-----C-----CeeeeCCC---CCCCeEEEEEEec
Q 032743 59 DITAVQLCETKNFACKLLDRS--H-----G-----AVWTTTSP---PSGPLSLRMFFSD 102 (134)
Q Consensus 59 dI~~Vevk~~g~~~W~~M~r~--~-----G-----a~W~~~~~---l~gpls~Rvt~~~ 102 (134)
.|++|||.-.|+..|+.-.-. - + ..|++.-+ .+|...|.+...|
T Consensus 301 ~I~rVeVS~DgG~tW~~A~L~~~~~~~~~~~~~aW~~W~~~~~~~~~~G~~~l~~RA~D 359 (386)
T cd02112 301 RVTRVEVSLDDGKSWKLASIDYPEDPTKYGKCWCWCFWSLDVPLSELLAAKEICVRAWD 359 (386)
T ss_pred cEEEEEEEcCCCCCceeCCCCCCCCccccCCCCEeEEEEEeeecccCCCcEEEEEEEEc
Confidence 699999999987789875321 1 1 24455432 2587666555544
No 19
>cd07048 BMC_PduB_repeat2 1,2-propanediol utilization protein B (PduB), Bacterial Micro-Compartment (BMC) domain repeat 2. PduB proteins are homologs of the carboxysome shell protein. They are encoded within the pdu operon and might be required for the formation of the outer shell of the bacterial pdu polyhedral organelles involved in coenzyme B12-dependent degradation of 1,2-propanediol. Although it has been suggested that PduB might form hexamers and further assemble into the flat facets of the polyhedral outer shell of the pdu organelles at present no experimental evidence directly supports this view. PduB proteins contain two tandem BMC domains repeats. This CD contains repeat 2 (the second BMC domain of PduB).
Probab=28.71 E-value=1.1e+02 Score=20.34 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=21.2
Q ss_pred HHhhhhCceeeEEEEEEee---CCCCcceEEEEc
Q 032743 8 AAALLAHGVVDVEYRRVSC---SYPYKNITIKID 38 (134)
Q Consensus 8 ~~~~~~~Giv~v~yrrV~C---~~~G~~i~f~V~ 38 (134)
.++..|+.-|.+.+.|.+| ..+| .+.+.|.
T Consensus 17 aD~~lKaA~V~Ll~~~~~~~g~~~~G-k~~i~vt 49 (70)
T cd07048 17 ADTALKAANVDIVGYASPSGGTSFSN-EVILTIS 49 (70)
T ss_pred HHHHHhhcCeEEEEEEccccCCCcCC-EEEEEEE
Confidence 4667888899999888989 4455 4444444
No 20
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=27.87 E-value=1.8e+02 Score=18.91 Aligned_cols=54 Identities=19% Similarity=0.286 Sum_probs=35.0
Q ss_pred EEEEEecCccceEEEEEEecCCcceE---ecccCCCCeeeeCCC-CCCCeEEEEEEecCCCCcceEEEe
Q 032743 49 FVIWYQQGKKDITAVQLCETKNFACK---LLDRSHGAVWTTTSP-PSGPLSLRMFFSDEDGDDESWVVP 113 (134)
Q Consensus 49 vli~nv~G~gdI~~Vevk~~g~~~W~---~M~r~~Ga~W~~~~~-l~gpls~Rvt~~~G~~~~~~~vv~ 113 (134)
+.+...++ -.+|+|.++ =.+|. ||.++-+. |.+.-+ +.|.+.+|+.. || +++.-
T Consensus 4 v~f~~~~~---a~~V~v~G~-F~~W~~~~pm~~~~~~-~~~~~~L~~g~y~YkF~V-dg-----~w~~d 61 (79)
T cd02859 4 TTFVWPGG---GKEVYVTGS-FDNWKKKIPLEKSGKG-FSATLRLPPGKYQYKFIV-DG-----EWRHS 61 (79)
T ss_pred EEEEEcCC---CcEEEEEEE-cCCCCccccceECCCC-cEEEEEcCCCCEEEEEEE-CC-----EEEeC
Confidence 44555542 367888875 24676 49888555 877544 45788888886 56 77654
No 21
>PF04620 FlaA: Flagellar filament outer layer protein Flaa; InterPro: IPR006714 Periplasmic flagella are the organelles of spirochete mobility, and are structurally different from the flagella of other motile bacteria. They reside inside the cell within the periplasmic space, and confer mobility in viscous gel-like media such as connective tissue []. The flagella are composed of an outer sheath of FlaA proteins and a core filament of FlaB proteins. Each species usually has several FlaA protein species [].; GO: 0001539 ciliary or flagellar motility, 0030288 outer membrane-bounded periplasmic space
Probab=24.38 E-value=2.4e+02 Score=22.50 Aligned_cols=43 Identities=21% Similarity=0.377 Sum_probs=30.6
Q ss_pred ceEEEEccCCCCCceEEEEEEEecCccceEEEEEEecCCcceEecc
Q 032743 32 NITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLD 77 (134)
Q Consensus 32 ~i~f~V~~gS~~~~~l~vli~nv~G~gdI~~Vevk~~g~~~W~~M~ 77 (134)
.|.+.|-+.. ++++|.+++.+..| .+..+.+-.=+=..|+.|+
T Consensus 109 ~I~vWV~G~n-~~h~L~v~lrD~~G--~~~~l~~G~L~f~GWK~L~ 151 (217)
T PF04620_consen 109 SISVWVYGDN-YPHWLEVLLRDAKG--EVHQLPLGSLNFDGWKNLT 151 (217)
T ss_pred EEEEEEECCC-CCceEEEEEEcCCC--CEEEEEeeeecCCceeEEE
Confidence 5667776655 69999999999875 4666666333335798886
No 22
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=24.24 E-value=37 Score=26.82 Aligned_cols=11 Identities=36% Similarity=0.897 Sum_probs=9.5
Q ss_pred cccCCCCcCCc
Q 032743 115 NNIPQDWKAGE 125 (134)
Q Consensus 115 ~viP~~w~~G~ 125 (134)
+|+|++|++|+
T Consensus 168 eVcPagW~pgs 178 (196)
T KOG0852|consen 168 EVCPAGWKPGS 178 (196)
T ss_pred ccccCCCCCCC
Confidence 47999999986
No 23
>cd08544 Reeler Reeler, the N-terminal domain of reelin, F-spondin, and a variety of other proteins. This domain is found at the N-terminus of F-spondin, a protein attached to the extracellular matrix, which plays roles in neuronal development and vascular remodelling. The F-spondin reeler domain has been reported to bind heparin. The reeler domain is also found at the N-terminus of reelin, an extracellular glycoprotein involved in the development of the brain cortex, and in a variety of other eukaryotic proteins with different domain architectures, including the animal ferric-chelate reductase 1 or stromal cell-derived receptor 2, a member of the cytochrome B561 family, which reduces ferric iron before its transport from the endosome to the cytoplasm. Also included is the insect putative defense protein 1, which is expressed upon bacterial infection and appears to contain a single reeler domain.
Probab=24.18 E-value=2.6e+02 Score=19.65 Aligned_cols=74 Identities=18% Similarity=0.190 Sum_probs=40.8
Q ss_pred CCCcceEEEEccCCCCCceEE--EEEEEecCccceEEEEEEec-C------C---c----ceEecccCCCCeeeeCCCCC
Q 032743 28 YPYKNITIKIDEKSDYPHYLG--FVIWYQQGKKDITAVQLCET-K------N---F----ACKLLDRSHGAVWTTTSPPS 91 (134)
Q Consensus 28 ~~G~~i~f~V~~gS~~~~~l~--vli~nv~G~gdI~~Vevk~~-g------~---~----~W~~M~r~~Ga~W~~~~~l~ 91 (134)
.||..++++|...+. ..|-. |+..+......|-..+.... + . . .-...++++=-.|..+....
T Consensus 31 ~pG~~~~Vtl~~~~~-~~F~GF~lqAr~~~~~~~vG~f~~~~~~~tk~~~c~~~~~avtH~~~~~k~~v~~~W~AP~~~~ 109 (135)
T cd08544 31 VPGETYTVTLSGSSP-SPFRGFLLQARDASSNEPVGTFQLPPDSGTKLLTCCGSDNAVTHSNNSKKTSVTFTWTAPSNGS 109 (135)
T ss_pred CCCCEEEEEEECCCC-CceeEEEEEEEcCCCCcceEEEEeCCCcccEEecCCCCCCcceeCCCCCCceeEEEEECCCCCC
Confidence 477799999998642 24433 45555542223333333221 0 0 1 11223344444577676677
Q ss_pred CCeEEEEEEec
Q 032743 92 GPLSLRMFFSD 102 (134)
Q Consensus 92 gpls~Rvt~~~ 102 (134)
|++.||.|...
T Consensus 110 g~V~F~aTvv~ 120 (135)
T cd08544 110 GCVTFRATVVQ 120 (135)
T ss_pred ccEEEEEEEEE
Confidence 99999999854
No 24
>PF08482 HrpB_C: ATP-dependent helicase C-terminal; InterPro: IPR013689 This domain is found near the C terminus of bacterial ATP-dependent helicases such as HrpB.
Probab=22.05 E-value=1.4e+02 Score=22.15 Aligned_cols=68 Identities=19% Similarity=0.296 Sum_probs=45.5
Q ss_pred ceEEEEccCCCCCceEEEEEEEecCccceEEEEEEecCCcceEecccCCCCeeeeCCCCCC--CeEEEEEEecCCCCcce
Q 032743 32 NITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSHGAVWTTTSPPSG--PLSLRMFFSDEDGDDES 109 (134)
Q Consensus 32 ~i~f~V~~gS~~~~~l~vli~nv~G~gdI~~Vevk~~g~~~W~~M~r~~Ga~W~~~~~l~g--pls~Rvt~~~G~~~~~~ 109 (134)
+-+|++-.|++ +.|.|..+.+.+.+|-|++- ||-. +.+....| |+.|.+.+-.| +
T Consensus 41 P~~~~~PsG~~------~~I~Y~~~~~P~lsvrlQE~-----------FG~~-~tP~i~~Grvpl~l~LLSPa~-----R 97 (133)
T PF08482_consen 41 PEHITLPSGRR------IRIDYSDDGPPVLSVRLQEL-----------FGLT-ETPRIAGGRVPLTLELLSPAG-----R 97 (133)
T ss_pred CCeEEcCCCCE------EEEEECCCCCcEEEEeHHHH-----------hCCC-CCCeecCCCceeEEEEeCCCC-----C
Confidence 34567777665 67788766667766666543 4421 12333456 99999999887 8
Q ss_pred EEEeccccCCCCc
Q 032743 110 WVVPVNNIPQDWK 122 (134)
Q Consensus 110 ~vv~~~viP~~w~ 122 (134)
-+..+.=++.-|+
T Consensus 98 PiqvT~DL~~FW~ 110 (133)
T PF08482_consen 98 PIQVTQDLASFWQ 110 (133)
T ss_pred ceeeeCCHHHHhc
Confidence 8877776888786
No 25
>COG5297 CelA Cellobiohydrolase A (1,4-beta-cellobiosidase A) [Carbohydrate transport and metabolism]
Probab=21.63 E-value=2e+02 Score=25.49 Aligned_cols=54 Identities=19% Similarity=0.136 Sum_probs=28.4
Q ss_pred CcceEEEEccCCC--CCceEEEEEEEecCccceEEEEEEecCCcceEecccCCCCeeeeCC
Q 032743 30 YKNITIKIDEKSD--YPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSHGAVWTTTS 88 (134)
Q Consensus 30 G~~i~f~V~~gS~--~~~~l~vli~nv~G~gdI~~Vevk~~g~~~W~~M~r~~Ga~W~~~~ 88 (134)
-+||+..|.-.|. ..|--+|.|+|.+-.-.-=.|.|.-+| ..+--|+|+|.++.
T Consensus 461 ~~ni~~~i~~~~~w~~g~cerv~vtnt~ss~s~w~~t~~~kg-----~iq~lw~a~ws~~g 516 (544)
T COG5297 461 TKNITSSITVDSDWHTGYCERVKVTNTGSSRSSWTVTIPLKG-----TIQTLWSATWSLSG 516 (544)
T ss_pred ccCceeEEEecccccccceeEEEeeccCCCCcceEEEEeecc-----chhhhhhccccccC
Confidence 3477766654432 234566777776533222222222222 23446999998764
No 26
>PF02014 Reeler: Reeler domain Schematic picture including Reeler domain; InterPro: IPR002861 Extracellular matrix (ECM) proteins play an important role in early cortical development, specifically in the formation of neural connections and in controlling the cyto-architecture of the central nervous system. The product of the reeler gene in mouse is reelin,a large extracellular protein secreted by pioneer neurons that coordinates cell positioning during neurodevelopment []. F-spondin and mindin are a family of matrix-attached adhesion molecules that share structural similarities and overlapping domains of expression. Both F-spondin and mindin promote adhesion and outgrowth of hippocampal embryonic neurons and bind to a putative receptor(s) expressed on both hippocampal and sensory neurons []. This domain of unknown function is found at the N terminus of reelin and F-spondin.; PDB: 2ZOT_B 2ZOU_B 3COO_A.
Probab=21.37 E-value=2.9e+02 Score=19.40 Aligned_cols=75 Identities=17% Similarity=0.247 Sum_probs=35.6
Q ss_pred CCCCcceEEEE--ccCCCCCceEEEEEEEecCccc--eEEEEEEecC----Ccce------------EecccCCCCeeee
Q 032743 27 SYPYKNITIKI--DEKSDYPHYLGFVIWYQQGKKD--ITAVQLCETK----NFAC------------KLLDRSHGAVWTT 86 (134)
Q Consensus 27 ~~~G~~i~f~V--~~gS~~~~~l~vli~nv~G~gd--I~~Vevk~~g----~~~W------------~~M~r~~Ga~W~~ 86 (134)
-.+|+.++++| ..+.....|| |+..+..+... |-..++-... .... ...++++=..|..
T Consensus 30 y~pg~~~~Vtl~~~~~~~F~GFl-lqAr~~~~~~~~~vG~f~~~~~~~~~~~~~C~~~~~~avTH~~~~~K~~v~~~W~A 108 (132)
T PF02014_consen 30 YEPGQTYTVTLSSSGSSSFRGFL-LQARDANNSSPAPVGTFQLPPDSDTTQLLDCSGGDNNAVTHSNNSPKTSVTFTWTA 108 (132)
T ss_dssp B-TTBEEEEEEEETTTEEBSEEE-EEEEETT--SSSBSSEEEES-TTTEEEETTE----EEEEEESS-S-BSEEEEEEE-
T ss_pred EcCCCEEEEEEECCCCCceeEEE-EEEEeCCCCCcccccccCcCCcccceEeecccccccceEEecCCCCccEEEEEEcC
Confidence 35788999999 3322122333 56666655432 3333332211 0011 1223344456777
Q ss_pred CCCCCCCeEEEEEEec
Q 032743 87 TSPPSGPLSLRMFFSD 102 (134)
Q Consensus 87 ~~~l~gpls~Rvt~~~ 102 (134)
+....|++.||.|...
T Consensus 109 P~~~~g~V~fraTvv~ 124 (132)
T PF02014_consen 109 PADFSGCVTFRATVVQ 124 (132)
T ss_dssp -STTS-EEEEEEEEES
T ss_pred CCCCCceEEEEEEEEE
Confidence 7766799999999854
No 27
>KOG4192 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.02 E-value=1.6e+02 Score=21.91 Aligned_cols=51 Identities=12% Similarity=-0.049 Sum_probs=35.8
Q ss_pred EeeCCCCcceEEEEccCCCCCceEEEEEEEecCccceEEEEEEecCCcceEeccc
Q 032743 24 VSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDR 78 (134)
Q Consensus 24 V~C~~~G~~i~f~V~~gS~~~~~l~vli~nv~G~gdI~~Vevk~~g~~~W~~M~r 78 (134)
+-|++-| =-.|...- | ||+=.+|...=+.+ |.+..|++..-++.+|..|.+
T Consensus 74 tfck~cG-V~sf~~~r-s-~p~~~~i~phCld~-gTlr~v~~~~fnGqdwe~~~e 124 (134)
T KOG4192|consen 74 TFCKRCG-VQSFYSPR-S-NPYGKGIAPHCLDE-GTLRSVVWEEFNGQDWEATME 124 (134)
T ss_pred eeecccc-ceeccccc-c-CCCceeecceeecC-CceeEEEEEEecCcchhHhhh
Confidence 5677665 22355443 4 69888888887764 689999999877677876554
Done!