Query 032743
Match_columns 134
No_of_seqs 110 out of 603
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 08:20:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032743.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032743hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hcz_X Beta-expansin 1A; domai 100.0 8.9E-44 3E-48 284.3 10.3 127 1-133 108-244 (245)
2 1n10_A PHL P I, pollen allerge 100.0 5.8E-43 2E-47 279.1 13.0 117 8-130 122-241 (241)
3 3ft1_A PHL P 3 allergen; beta- 100.0 1.7E-41 5.9E-46 239.2 12.3 96 31-133 2-99 (100)
4 2jnz_A PHL P 3 allergen; timot 100.0 8.1E-39 2.8E-43 228.2 12.6 96 29-131 11-108 (108)
5 1bmw_A PHL P II, pollen allerg 100.0 9.3E-39 3.2E-43 223.7 -1.0 92 31-130 2-95 (96)
6 3d30_A YOAJ, expansin like pro 100.0 5.7E-35 1.9E-39 228.2 13.6 121 1-134 83-207 (208)
7 1wc2_A Endoglucanase; hydrolas 97.1 0.0001 3.4E-09 56.3 0.5 28 1-29 133-160 (181)
8 3pe9_A Fibronectin(III)-like m 62.9 27 0.00091 23.2 6.3 45 55-102 27-71 (98)
9 3uto_A Twitchin; kinase, muscl 39.6 36 0.0012 28.9 4.8 45 58-102 39-86 (573)
10 2blf_A SORA, sulfite\:cytochro 38.9 32 0.0011 28.2 4.2 49 55-103 289-346 (373)
11 2kct_A Cytochrome C-type bioge 31.2 53 0.0018 21.8 3.6 32 93-125 30-61 (94)
12 2yux_A Myosin-binding protein 25.4 1.1E+02 0.0039 19.3 4.5 41 63-103 54-96 (120)
13 1ogp_A Sulfite oxidase; oxidor 25.1 87 0.003 25.8 4.6 26 52-77 290-315 (393)
14 2yrl_A KIAA1837 protein; PKD d 24.2 1.1E+02 0.0039 19.8 4.3 17 89-105 66-82 (102)
15 2zou_A Spondin-1; beta-sandwic 23.1 2E+02 0.0067 20.1 5.9 75 28-103 36-129 (149)
16 2yuw_A Myosin binding protein 22.8 1.4E+02 0.0048 18.3 6.1 45 59-103 38-87 (110)
17 1wft_A 1700129L13RIK protein; 22.4 1.8E+02 0.0063 20.3 5.2 50 18-68 57-114 (123)
18 2jn4_A Hypothetical protein FI 21.0 1.2E+02 0.0042 20.0 3.9 43 52-97 35-83 (87)
19 3u7d_B Protein HEG homolog 1; 20.3 28 0.00095 17.9 0.4 17 23-39 2-19 (26)
20 2d7n_A Filamin-C; beta-sandwic 20.1 1.8E+02 0.0063 18.7 6.6 25 16-41 8-32 (93)
No 1
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays}
Probab=100.00 E-value=8.9e-44 Score=284.31 Aligned_cols=127 Identities=28% Similarity=0.559 Sum_probs=116.6
Q ss_pred CCccHHHHHhh-------hhCceeeEEEEEEeeCCCC-cceEEEEccCCCCCceEEEEEEEecCccceEEEEEEecCCcc
Q 032743 1 MAQTTDAAAAL-------LAHGVVDVEYRRVSCSYPY-KNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFA 72 (134)
Q Consensus 1 ma~~~~~~~~~-------~~~Giv~v~yrrV~C~~~G-~~i~f~V~~gS~~~~~l~vli~nv~G~gdI~~Vevk~~g~~~ 72 (134)
|+.++|.+++. +++|+|+|+||||+|.++| .+|+|+|++|| |+|||+|+|+|++|++||++||||+++++.
T Consensus 108 LS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~~~gg~ni~f~v~~Gs-~~~~~avlv~n~~g~g~V~~V~ik~~~~~~ 186 (245)
T 2hcz_X 108 LSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGC-NPNYLAVLVKYVADDGDIVLMEIQDKLSAE 186 (245)
T ss_dssp ECHHHHHHTBCTTCHHHHTTTCCEEEEEEEECCCCSTTCCCEEEECCCC-SSSCCCEEEECCCTTCCEEEEEBCCSSSCS
T ss_pred cCHHHHHHHhccccccccccCCEEEEEEEEEecCCCCCCcEEEEEcCCC-CcceEEEEEEecCCCCCEEEEEEEeCCCCc
Confidence 45556655554 8999999999999999983 47999999999 699999999999999999999999997779
Q ss_pred eEecccCCCCeeeeCCC--CCCCeEEEEEEecCCCCcceEEEeccccCCCCcCCcEEeCCCCC
Q 032743 73 CKLLDRSHGAVWTTTSP--PSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTGVQV 133 (134)
Q Consensus 73 W~~M~r~~Ga~W~~~~~--l~gpls~Rvt~~~G~~~~~~~vv~~~viP~~w~~G~tY~s~~qf 133 (134)
|++|+|+||++|++++. |+||||||||+.+| ++|++.||||++|++|+||++++||
T Consensus 187 W~~m~r~~G~~W~~~~~~~l~gpls~RvT~~~G-----~~v~~~nViP~~w~~g~ty~~~~qf 244 (245)
T 2hcz_X 187 WKPMKLSWGAIWRMDTAKALKGPFSIRLTSESG-----KKVIAKDVIPANWRPDAVYTSNVQF 244 (245)
T ss_dssp CBCCEEEETTEEECSCCSSCCSSCCEEEEETTS-----CEEEESCSCCSSCCTTCEEECSCCC
T ss_pred eeECccCCCCEEEECCCCCCCCCEEEEEEEeCC-----cEEEEeeeecCCCCCCCEEeCcccc
Confidence 99999999999999874 88999999999998 9999999999999999999999999
No 2
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3
Probab=100.00 E-value=5.8e-43 Score=279.07 Aligned_cols=117 Identities=29% Similarity=0.614 Sum_probs=108.7
Q ss_pred HHhhhhCceeeEEEEEEeeCCCC-cceEEEEccCCCCCceEEEEEEEecCccceEEEEEEecCCcceEecccCCCCeeee
Q 032743 8 AAALLAHGVVDVEYRRVSCSYPY-KNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSHGAVWTT 86 (134)
Q Consensus 8 ~~~~~~~Giv~v~yrrV~C~~~G-~~i~f~V~~gS~~~~~l~vli~nv~G~gdI~~Vevk~~g~~~W~~M~r~~Ga~W~~ 86 (134)
+.+|+++|+|+|+||||+|.++| .+|+|+|++|| |+|||+|+|+|++|+|||++||||+++++.|++|+|+||++|++
T Consensus 122 ~~~L~~~Gii~V~yrrV~C~~~gg~~i~f~v~~Gs-~~~~~~vlv~n~~g~g~V~~V~ik~~~~~~W~~m~r~wG~~W~~ 200 (241)
T 1n10_A 122 EQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGS-NPNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRI 200 (241)
T ss_dssp HHHHHTTCSEEEEEEECCCCCCTTCCCEEEECTTC-BTTEEEEEEECCCCSSCEEEEEEEETTCCCCEECBCCTTTCEEE
T ss_pred ccccccCCEEEEEEEEEeCCCCCCCceEEEEcCCC-CcceEEEEEEecCCCCCEEEEEEEeCCCCCeEECccCcCcEEEe
Confidence 34459999999999999999984 68999999999 59999999999999999999999999778999999999999999
Q ss_pred CCC--CCCCeEEEEEEecCCCCcceEEEeccccCCCCcCCcEEeCC
Q 032743 87 TSP--PSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGETYDTG 130 (134)
Q Consensus 87 ~~~--l~gpls~Rvt~~~G~~~~~~~vv~~~viP~~w~~G~tY~s~ 130 (134)
++. |+||||||||+++| ++|++.||||++|+||+||+++
T Consensus 201 ~~~~~l~gpls~RvT~~~G-----~~v~~~nViP~~w~~g~ty~~~ 241 (241)
T 1n10_A 201 DTPDKLTGPFTVRYTTEGG-----TKTEAEDVIPEGWKADTSYESK 241 (241)
T ss_dssp ECSSCCCSCEEEEEEESSS-----CEEEEEEEECSSCCSSEEEEC-
T ss_pred CCCCCCCCCEEEEEEEeCC-----cEEEEccccCCCCCCCCEEeCC
Confidence 874 88999999999998 9999999999999999999973
No 3
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} SCOP: b.7.3.0 PDB: 3ft9_A
Probab=100.00 E-value=1.7e-41 Score=239.19 Aligned_cols=96 Identities=25% Similarity=0.387 Sum_probs=92.1
Q ss_pred cceEEEEccCCCCCceEEEEEEEecCccceEEEEEEecCCcceEecccCCCCeeeeCC--CCCCCeEEEEEEecCCCCcc
Q 032743 31 KNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSHGAVWTTTS--PPSGPLSLRMFFSDEDGDDE 108 (134)
Q Consensus 31 ~~i~f~V~~gS~~~~~l~vli~nv~G~gdI~~Vevk~~g~~~W~~M~r~~Ga~W~~~~--~l~gpls~Rvt~~~G~~~~~ 108 (134)
++|+|+|++|| |||||+|||+|++|+|||.+||||++++++|++|+| |||+|++++ +|+||||||+|++||
T Consensus 2 ~~i~F~V~~gs-~~~~l~vlv~nv~G~gdI~~V~ik~s~t~~W~~M~r-wGa~W~~~s~~~l~GplSfRvt~~~G----- 74 (100)
T 3ft1_A 2 VQVTFTVQKGS-DPKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTK-KGNVWEVKSSKPLVGPFNFRFMSKGG----- 74 (100)
T ss_dssp BEEEEEECTTC-BTTEEEEEEEEECTTCCEEEEEEECTTCCCCEECEE-ETTEEEEECSSCCCSSEEEEEEETTC-----
T ss_pred CCEEEEEecCC-CcceEEEEEEEcCCCccEEEEEEEeCCCCCeEEecc-cCCEeEeCCCCCCCCCEEEEEEEcCC-----
Confidence 48999999999 699999999999999999999999998778999999 999999987 799999999999998
Q ss_pred eEEEeccccCCCCcCCcEEeCCCCC
Q 032743 109 SWVVPVNNIPQDWKAGETYDTGVQV 133 (134)
Q Consensus 109 ~~vv~~~viP~~w~~G~tY~s~~qf 133 (134)
++++++||||++|+||+||++++||
T Consensus 75 ~~~v~~nViPa~W~~G~ty~s~vq~ 99 (100)
T 3ft1_A 75 MRNVFDEVIPTAFSIGKTYKPEEQE 99 (100)
T ss_dssp CEEEEEEEECTTCCTTCEECCCCBC
T ss_pred cEEEECeEeCCCCCCCcEEeccccc
Confidence 9999999999999999999999997
No 4
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense}
Probab=100.00 E-value=8.1e-39 Score=228.22 Aligned_cols=96 Identities=24% Similarity=0.377 Sum_probs=91.0
Q ss_pred CCcceEEEEccCCCCCceEEEEEEEecCccceEEEEEEecCCcceEecccCCCCeeeeCC--CCCCCeEEEEEEecCCCC
Q 032743 29 PYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSHGAVWTTTS--PPSGPLSLRMFFSDEDGD 106 (134)
Q Consensus 29 ~G~~i~f~V~~gS~~~~~l~vli~nv~G~gdI~~Vevk~~g~~~W~~M~r~~Ga~W~~~~--~l~gpls~Rvt~~~G~~~ 106 (134)
.|++|+|+|+++| |||||+|||+|++|+|||.+||||+.+++.|++|+|+ ||+|++++ +|+||||||||+++|
T Consensus 11 ~g~~v~f~V~~~s-np~~l~VlV~nv~G~GdI~~V~Ik~~~~~~W~~M~rn-Ga~W~~~s~~~L~GplSfRvtts~G--- 85 (108)
T 2jnz_A 11 SAVQVTFTVQKGS-DPKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTKK-GNVWEVKSSKPLVGPFNFRFMSKGG--- 85 (108)
T ss_dssp CCCEEEEEECTTC-CSSEEEEEEEEEBTTBCEEEEEEECTTCCCCEECEEE-TTEEEEECSSCCCSSEEEEEEETTT---
T ss_pred CCccEEEEEecCC-CccEEEEEEEEeCCCCCEEEEEEEeCCCCcEeEcccc-CCEeEeCCCCCCCCCEEEEEEEcCC---
Confidence 5789999999999 6999999999999999999999998767899999999 99999987 899999999999998
Q ss_pred cceEEEeccccCCCCcCCcEEeCCC
Q 032743 107 DESWVVPVNNIPQDWKAGETYDTGV 131 (134)
Q Consensus 107 ~~~~vv~~~viP~~w~~G~tY~s~~ 131 (134)
++++++||||++|+||+||++++
T Consensus 86 --~~~va~nViPa~W~~Gqty~s~v 108 (108)
T 2jnz_A 86 --MRNVFDEVIPTAFSIGKTYKPEE 108 (108)
T ss_dssp --EEEEEEEEECSSCCTTCEECCCC
T ss_pred --cEEEECeEECCCCCCCCEEeCCC
Confidence 99999999999999999999864
No 5
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A
Probab=100.00 E-value=9.3e-39 Score=223.74 Aligned_cols=92 Identities=23% Similarity=0.425 Sum_probs=86.8
Q ss_pred cceEEEEccCCCCCceEEEEEEEecCccceEEEEEEecCCcceEecccCCCCeeeeCC--CCCCCeEEEEEEecCCCCcc
Q 032743 31 KNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSHGAVWTTTS--PPSGPLSLRMFFSDEDGDDE 108 (134)
Q Consensus 31 ~~i~f~V~~gS~~~~~l~vli~nv~G~gdI~~Vevk~~g~~~W~~M~r~~Ga~W~~~~--~l~gpls~Rvt~~~G~~~~~ 108 (134)
++|+|+|++|| |||||+|+|+|++ |||.+||||++++++|++|+|+|||+|++++ +|+||||||+|+++|
T Consensus 2 ~~i~F~V~~gs-~~~~l~vlv~nv~--gdI~~V~ik~~~~~~W~~M~r~wGa~W~~~~~~~L~GplSfRvt~~~G----- 73 (96)
T 1bmw_A 2 PKVTFTVEKGS-NEKHLAVLVKYEG--DTMAEVELREHGSDEWVAMTKGEGGVWTFDSEEPLQGPFNFRFLTEKG----- 73 (96)
T ss_dssp CCCCCCCCTTC-SSSBCCBCCCCSS--SCCCCCEECCSSSSSCEECBCCSSSSBBCBCCSSCCCCCCBCCEETTT-----
T ss_pred CCEEEEEecCC-CCceEEEEEEEeC--CCEEEEEEEECCCCcEEECccCcCceeEeCCCCCCCCCEEEEEEEcCC-----
Confidence 48999999999 6999999999998 8999999999778899999999999999998 689999999999988
Q ss_pred eEEEeccccCCCCcCCcEEeCC
Q 032743 109 SWVVPVNNIPQDWKAGETYDTG 130 (134)
Q Consensus 109 ~~vv~~~viP~~w~~G~tY~s~ 130 (134)
++++++||||++|+||+||+++
T Consensus 74 ~~~v~~nViP~~W~~G~ty~~~ 95 (96)
T 1bmw_A 74 MKNVFDDVVPEKYTIGATYAPE 95 (96)
T ss_dssp EECCBSSCSCSSCCSSSCCCC-
T ss_pred cEEEEeeEeCCCCCCCCEEeCC
Confidence 9999999999999999999985
No 6
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A
Probab=100.00 E-value=5.7e-35 Score=228.15 Aligned_cols=121 Identities=16% Similarity=0.158 Sum_probs=110.8
Q ss_pred CCccHHHHHhhhhCceeeEEEEEEeeCCCCcceEEEEccCCCCCceEEEEEEEecCccceEEEEEEecCCcceEecccCC
Q 032743 1 MAQTTDAAAALLAHGVVDVEYRRVSCSYPYKNITIKIDEKSDYPHYLGFVIWYQQGKKDITAVQLCETKNFACKLLDRSH 80 (134)
Q Consensus 1 ma~~~~~~~~~~~~Giv~v~yrrV~C~~~G~~i~f~V~~gS~~~~~l~vli~nv~G~gdI~~Vevk~~g~~~W~~M~r~~ 80 (134)
|++++|.+++.++.|+++|+||||+|.++| +|+|+|++|| |+||++|+|+|++| ||++||||++ +.|++|+|+|
T Consensus 83 LS~~aF~~la~~~~G~i~v~~~~V~C~~~G-~i~f~v~~Gs-~~~~~~v~v~n~~g--~v~~v~i~~~--~~W~~m~r~~ 156 (208)
T 3d30_A 83 LSPNAFRKIGNMKDGKINIKWRVVKAPITG-NFTYRIKEGS-SRWWAAIQVRNHKY--PVMKMEYEKD--GKWINMEKMD 156 (208)
T ss_dssp ECHHHHHHHSCGGGSSEEEEEEEECCCCCS-CCEEEECTTC-SSSEEEEEEESCSS--CEEEEEEEET--TEEEEEEECT
T ss_pred CCHHHHHHhcccCCCEEEEEEEEeCCCCCC-ceeEEEcCCC-CCceEEEEEEecCC--CEEEEEEecC--CcEEEccccc
Confidence 688999999999999999999999999999 9999999999 69999999999986 9999999987 4899999999
Q ss_pred CCeeeeCCCCCCCeEEEEEEecCCCCcceEEEeccccCCCCcC----CcEEeCCCCCC
Q 032743 81 GAVWTTTSPPSGPLSLRMFFSDEDGDDESWVVPVNNIPQDWKA----GETYDTGVQVN 134 (134)
Q Consensus 81 Ga~W~~~~~l~gpls~Rvt~~~G~~~~~~~vv~~~viP~~w~~----G~tY~s~~qf~ 134 (134)
++.|..+.++.+||+||||+.+| +++ .+|||++|++ +.+|++++||+
T Consensus 157 ~n~~~~~~~~~~pls~rvT~~~G-----~~v--~~vip~~w~~~~~~~~~~~~~~Qf~ 207 (208)
T 3d30_A 157 YNHFVSTNLGTGSLKVRMTDIRG-----KVV--KDTIPKLPESGTSKAYTVPGHVQFP 207 (208)
T ss_dssp TSCEEEECCCSSSEEEEEEETTC-----CEE--EEEECCCCSSCCSSCEEEECCCCCC
T ss_pred cceeecCCCCCCCEEEEEEECCC-----CEE--EEEECCCCccCcccceEEeCcCccC
Confidence 76665555677799999999998 888 7899999997 89999999995
No 7
>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1
Probab=97.08 E-value=0.0001 Score=56.28 Aligned_cols=28 Identities=7% Similarity=0.208 Sum_probs=24.5
Q ss_pred CCccHHHHHhhhhCceeeEEEEEEeeCCC
Q 032743 1 MAQTTDAAAALLAHGVVDVEYRRVSCSYP 29 (134)
Q Consensus 1 ma~~~~~~~~~~~~Giv~v~yrrV~C~~~ 29 (134)
||+|+ ..++.+.+|+|||+||||+|.+.
T Consensus 133 Ls~pa-~~Ia~~~~GivpV~yrrV~C~~~ 160 (181)
T 1wc2_A 133 LENGR-SQVTGMGWNNPETTWEVVNCDSE 160 (181)
T ss_dssp EECTT-STTGGGTCSSEEEEEEEECHHHH
T ss_pred ccchH-HHhhhhcCCCceeEEEEEeCCCC
Confidence 67888 68888999999999999999753
No 8
>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome, unknown function; 1.69A {Clostridium thermocellum}
Probab=62.91 E-value=27 Score=23.25 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=28.1
Q ss_pred cCccceEEEEEEecCCcceEecccCCCCeeeeCCCCCCCeEEEEEEec
Q 032743 55 QGKKDITAVQLCETKNFACKLLDRSHGAVWTTTSPPSGPLSLRMFFSD 102 (134)
Q Consensus 55 ~G~gdI~~Vevk~~g~~~W~~M~r~~Ga~W~~~~~l~gpls~Rvt~~~ 102 (134)
..+|.|.+||+.-.|..-...-.+-|-..|... .|..+|+....|
T Consensus 27 D~dg~V~kVef~vdg~~vg~dt~apy~~~w~~~---~G~htl~a~AtD 71 (98)
T 3pe9_A 27 DSDGKISRVDFLVDGEVIGSDREAPYEYEWKAV---EGNHEISVIAYD 71 (98)
T ss_dssp CSSSCEEEEEEEETTEEEEEECSSSEEEEEECC---SEEEEEEEEEEE
T ss_pred eCCCCEEEEEEEECCEEecccccCCEEEEEEcC---CccEEEEEEEEE
Confidence 445679999999876444444555565566544 686666555444
No 9
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=39.56 E-value=36 Score=28.86 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=35.5
Q ss_pred cceE--EEEEEecCCcceEecccCCCCeeeeCCCCCC-CeEEEEEEec
Q 032743 58 KDIT--AVQLCETKNFACKLLDRSHGAVWTTTSPPSG-PLSLRMFFSD 102 (134)
Q Consensus 58 gdI~--~Vevk~~g~~~W~~M~r~~Ga~W~~~~~l~g-pls~Rvt~~~ 102 (134)
..|+ .||.++.++..|....+.-...+.+.....| .+.|||...+
T Consensus 39 s~I~~Y~vE~~~~~~~~W~~v~~~~~t~~~V~~L~~g~~Y~FRV~A~N 86 (573)
T 3uto_A 39 SLVTNYTIEKREAMGGSWSPCAKSRYTYTTIEGLRAGKQYEFRIIAEN 86 (573)
T ss_dssp SCCCEEEEEEEESSSCCCEEEEEESSSEEEECCCCTTCEEEEEEEEEE
T ss_pred CcccEEEEEEEECCCCceEEeccccCCEEEeCCCCCCCcEeEEEEEEc
Confidence 3565 5788888888999988877778888875555 8999999866
No 10
>2blf_A SORA, sulfite\:cytochrome C oxidoreductase subunit A; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_A* 2c9x_A* 2ca3_A* 2ca4_A*
Probab=38.87 E-value=32 Score=28.23 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=30.3
Q ss_pred cCccceEEEEEEecCCcceEecc-----cCCC-CeeeeCC-CCCCCeEE--EEEEecC
Q 032743 55 QGKKDITAVQLCETKNFACKLLD-----RSHG-AVWTTTS-PPSGPLSL--RMFFSDE 103 (134)
Q Consensus 55 ~G~gdI~~Vevk~~g~~~W~~M~-----r~~G-a~W~~~~-~l~gpls~--Rvt~~~G 103 (134)
+|.+.|+.|||.-.|+..|+.-. ..|- ..|++.- .+.|+..| |-++.+|
T Consensus 289 ~Gg~~I~rVEVS~DgG~tW~~A~l~~~~~~~~W~~W~~~~~~~~g~~~i~~RA~D~~g 346 (373)
T 2blf_A 289 DGGYGITQVSVSADAGKSWTNATLDPGLGKYSFRGWKAVLPLTKGDHVLMCRATNARG 346 (373)
T ss_dssp CSSSCEEEEEEESSTTSSCEECEECCCSCTTSCEEEEEEEEECSEEEEEEEEEEETTS
T ss_pred cCCCCEEEEEEEeCCCCCceEeEeCCCCCCCeEEEEEEEEEcCCCcEEEEEEEEcCCC
Confidence 66678999999998888998532 2221 3455442 25566555 5554444
No 11
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=31.16 E-value=53 Score=21.84 Aligned_cols=32 Identities=22% Similarity=0.456 Sum_probs=19.8
Q ss_pred CeEEEEEEecCCCCcceEEEeccccCCCCcCCc
Q 032743 93 PLSLRMFFSDEDGDDESWVVPVNNIPQDWKAGE 125 (134)
Q Consensus 93 pls~Rvt~~~G~~~~~~~vv~~~viP~~w~~G~ 125 (134)
.++|+|++.+. ....-.|+...++|..|+.|+
T Consensus 30 ~v~F~vtD~~~-~~~~v~V~Y~GilPDlFrEGq 61 (94)
T 2kct_A 30 GVRFRLEDKDN-TSKTVWVLYKGAVPDTFKPGV 61 (94)
T ss_dssp EEEEEEECSSC-TTCEEEEEEESCCCTTCCTTC
T ss_pred EEEEEEEcCCC-CCcEEEEEECCCCCccccCCC
Confidence 46777765420 122244566679999999876
No 12
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens}
Probab=25.39 E-value=1.1e+02 Score=19.26 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=24.6
Q ss_pred EEEEecCCcceEecccC-CCCeeeeCCCCCC-CeEEEEEEecC
Q 032743 63 VQLCETKNFACKLLDRS-HGAVWTTTSPPSG-PLSLRMFFSDE 103 (134)
Q Consensus 63 Vevk~~g~~~W~~M~r~-~Ga~W~~~~~l~g-pls~Rvt~~~G 103 (134)
|+.+..+...|..+... -...+.+.....+ .+.|||...+.
T Consensus 54 v~~~~~~~~~w~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~ 96 (120)
T 2yux_A 54 IQKADKKSMEWFTVIEHYHRTSATITELVIGNEYYFRVFSENM 96 (120)
T ss_dssp EEEEETTTCCCEEEESSCCSSCCEECCCCSSEEEEEEECCCSS
T ss_pred EEEEECCCCceEEeeecCCcCEEEECCCCCCCEEEEEEEEeeC
Confidence 55555556678876432 2234455443344 79999998764
No 13
>1ogp_A Sulfite oxidase; oxidoreductase, molybdenum cofactor, molybdopterin, peroxisomes, intramolecular electron transfer, oxidoreductas; HET: MTQ; 2.60A {Arabidopsis thaliana} SCOP: b.1.18.6 d.176.1.1
Probab=25.12 E-value=87 Score=25.78 Aligned_cols=26 Identities=12% Similarity=0.003 Sum_probs=19.6
Q ss_pred EEecCccceEEEEEEecCCcceEecc
Q 032743 52 WYQQGKKDITAVQLCETKNFACKLLD 77 (134)
Q Consensus 52 ~nv~G~gdI~~Vevk~~g~~~W~~M~ 77 (134)
-+-||.+.|+.|||.-.|+..|+.-.
T Consensus 290 A~sGgg~~I~rVEVS~DgG~tW~~A~ 315 (393)
T 1ogp_A 290 AVSGGGRGIERVDISLDGGKNWVEAS 315 (393)
T ss_dssp EECSTTCCEEEEEEESSTTSSCEECE
T ss_pred EEcCCCCCEEEEEEEcCCCCCceEee
Confidence 34455568999999998888998533
No 14
>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.15 E-value=1.1e+02 Score=19.80 Aligned_cols=17 Identities=18% Similarity=0.260 Sum_probs=13.1
Q ss_pred CCCCCeEEEEEEecCCC
Q 032743 89 PPSGPLSLRMFFSDEDG 105 (134)
Q Consensus 89 ~l~gpls~Rvt~~~G~~ 105 (134)
+-.|.|.||||..|++|
T Consensus 66 ~~~G~y~f~LTVtD~~G 82 (102)
T 2yrl_A 66 LQVGTYVFTLTVKDERN 82 (102)
T ss_dssp CCSSEEEEEEEEEBTTC
T ss_pred CCCeEEEEEEEEEeCCC
Confidence 34678999999988743
No 15
>2zou_A Spondin-1; beta-sandwich, extracellular protein, cell adhesion, extrace matrix, glycoprotein, secreted; 1.45A {Homo sapiens}
Probab=23.14 E-value=2e+02 Score=20.11 Aligned_cols=75 Identities=7% Similarity=0.194 Sum_probs=41.1
Q ss_pred CCCcceEEEEccCCC--CCceEEEEEEEecC-----ccceEEEEEEecCCcceE-----ec-------ccCCCCeeeeCC
Q 032743 28 YPYKNITIKIDEKSD--YPHYLGFVIWYQQG-----KKDITAVQLCETKNFACK-----LL-------DRSHGAVWTTTS 88 (134)
Q Consensus 28 ~~G~~i~f~V~~gS~--~~~~l~vli~nv~G-----~gdI~~Vevk~~g~~~W~-----~M-------~r~~Ga~W~~~~ 88 (134)
.||..++++|...+. ...|| |+..+... ...|-..++-..+.+.+. .. +++.=-.|..+.
T Consensus 36 ~pG~~~~VtL~~~~~~~F~GFl-lqAr~~~~~~~~~~~~vG~F~~~~~~~tk~~~~C~naVTH~~~~~K~~v~v~W~AP~ 114 (149)
T 2zou_A 36 KPGTSYRVTLSAAPPSYFRGFT-LIALRENREGDKEEDHAGTFQIIDEEETQFMSNCPVAVTESTPRRRTRIQVFWIAPP 114 (149)
T ss_dssp CTTCEEEEEEEECTTCCBSEEE-EEEEETTCCSCSGGGBCSEEEESCTTTEEEETTEEEEEEESSCCCBSEEEEEEECCC
T ss_pred cCCCcEEEEEeccCCCceEEEE-EEEEecCCccCCCCcceEEEEeCCCCccccccCCcCccEecCCCCCcEeEEEEeCCC
Confidence 478889999985432 22344 56666543 124445554333211222 12 222223566666
Q ss_pred CCCCCeEEEEEEecC
Q 032743 89 PPSGPLSLRMFFSDE 103 (134)
Q Consensus 89 ~l~gpls~Rvt~~~G 103 (134)
...|.+.||.|..-.
T Consensus 115 ~~~G~V~F~ATVvq~ 129 (149)
T 2zou_A 115 AGTGCVILKASIVQK 129 (149)
T ss_dssp TTCCCEEEEEEEESS
T ss_pred CCCccEEEEEEEEec
Confidence 678899999998653
No 16
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.79 E-value=1.4e+02 Score=18.30 Aligned_cols=45 Identities=11% Similarity=0.217 Sum_probs=28.1
Q ss_pred ceEE--EEEEecCCcceEecccC--CCCeeeeCCCCCC-CeEEEEEEecC
Q 032743 59 DITA--VQLCETKNFACKLLDRS--HGAVWTTTSPPSG-PLSLRMFFSDE 103 (134)
Q Consensus 59 dI~~--Vevk~~g~~~W~~M~r~--~Ga~W~~~~~l~g-pls~Rvt~~~G 103 (134)
.|.. |+.+..+...|..+... -...+.+.....+ .+.|||...+.
T Consensus 38 ~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~ 87 (110)
T 2yuw_A 38 GLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVKAVNA 87 (110)
T ss_dssp CEEEEEEEEEETTCSSEEECCSSCCCSSEEEECSCCTTCEEEEEEEEEET
T ss_pred CccEEEEEEEECCCccceEeccccCccCEEEECCCCCCCEEEEEEEEEcC
Confidence 4654 44455556689887543 3345666654344 79999998664
No 17
>1wft_A 1700129L13RIK protein; FN3 domain, similar to HOST cell factor 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1
Probab=22.41 E-value=1.8e+02 Score=20.32 Aligned_cols=50 Identities=16% Similarity=0.222 Sum_probs=34.4
Q ss_pred eEEEEEEeeCCCCcceEE--------EEccCCCCCceEEEEEEEecCccceEEEEEEec
Q 032743 18 DVEYRRVSCSYPYKNITI--------KIDEKSDYPHYLGFVIWYQQGKKDITAVQLCET 68 (134)
Q Consensus 18 ~v~yrrV~C~~~G~~i~f--------~V~~gS~~~~~l~vli~nv~G~gdI~~Vevk~~ 68 (134)
.+.|-||=|-..- ..++ +|+-.++..+.|+|...|..|.|.-++|-.-|.
T Consensus 57 qL~FvrVYcG~~~-~C~V~~~~L~~ahid~t~kpAiiFRIaArNeKGYGPaTqVrwlq~ 114 (123)
T 1wft_A 57 QLVFMRIYCGLKT-SCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQIRWLQG 114 (123)
T ss_dssp CCEEEEEEEESCS-EEEEEHHHHTTCCCBCSSSCEEEEEEEEBSSSSBCCCEEEEEECC
T ss_pred eeeEEEEEecCCc-ceEecccchhhhhhccCCCceEEEEEEeecCCCCCCcccceehhc
Confidence 4778899994322 2222 234444335789999999999999999876554
No 18
>2jn4_A Hypothetical protein FIXU, NIFT; structural genomics, PSI-2, protein structure initiative, northeast ST genomics consortium, NESG; NMR {Rhodopseudomonas palustris} SCOP: b.173.1.1
Probab=21.04 E-value=1.2e+02 Score=20.02 Aligned_cols=43 Identities=14% Similarity=0.103 Sum_probs=25.3
Q ss_pred EEecCccceEEEEEEecCC---cceEecccCCCCeeeeCC---CCCCCeEEE
Q 032743 52 WYQQGKKDITAVQLCETKN---FACKLLDRSHGAVWTTTS---PPSGPLSLR 97 (134)
Q Consensus 52 ~nv~G~gdI~~Vevk~~g~---~~W~~M~r~~Ga~W~~~~---~l~gpls~R 97 (134)
.|++ .-|+.+.-|..... +.|..+.+.| .|.++. +++-|.++|
T Consensus 35 ~YVp-KKDLEE~VVs~E~~~~WGG~vtLaNGw--~l~lp~l~~~~~LPiTve 83 (87)
T 2jn4_A 35 AYVA-KKDLEELIVEMENPALWGGKVTLANGW--QLELPAMAADTPLPITVE 83 (87)
T ss_dssp EEET-TTTEEEEEEEESSSSSCSSEEEETTSC--EEECCCCSSSCSSCEEEC
T ss_pred EEEe-CCcchhheeeeecccccCcEEEECCcc--EEEeCCCCCCCCCCEEEE
Confidence 4554 34777766663322 4568888865 566653 244477765
No 19
>3u7d_B Protein HEG homolog 1; FERM domain, RAP1 effector, membrane protein cytoplasmic TAI protein binding; 2.49A {Homo sapiens}
Probab=20.30 E-value=28 Score=17.89 Aligned_cols=17 Identities=41% Similarity=0.645 Sum_probs=10.2
Q ss_pred EEeeCCCCc-ceEEEEcc
Q 032743 23 RVSCSYPYK-NITIKIDE 39 (134)
Q Consensus 23 rV~C~~~G~-~i~f~V~~ 39 (134)
|-+|-+||+ |..|--++
T Consensus 2 rhsciypgqynpsfisdd 19 (26)
T 3u7d_B 2 RHSCIFPGQYNPSFISDE 19 (26)
T ss_pred cccccccCccCcccccCc
Confidence 457888874 55554444
No 20
>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=20.06 E-value=1.8e+02 Score=18.65 Aligned_cols=25 Identities=8% Similarity=0.038 Sum_probs=16.7
Q ss_pred eeeEEEEEEeeCCCCcceEEEEccCC
Q 032743 16 VVDVEYRRVSCSYPYKNITIKIDEKS 41 (134)
Q Consensus 16 iv~v~yrrV~C~~~G~~i~f~V~~gS 41 (134)
--|..| .++|...+..|+++|..-|
T Consensus 8 ~~p~~f-~i~~~~g~~~l~v~V~~Ps 32 (93)
T 2d7n_A 8 LRPFNL-VIPFAVQKGELTGEVRMPS 32 (93)
T ss_dssp BCCEEE-EECCCCSSSCEEEEEECTT
T ss_pred cCCEEE-EEEcCCCCCCEEEEEECCC
Confidence 446777 5788765557777777644
Done!