Query 032747
Match_columns 134
No_of_seqs 209 out of 1563
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 05:26:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032747.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032747hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01807 GDX_N ubiquitin-like d 99.9 1.6E-21 3.4E-26 116.0 8.3 73 1-73 1-73 (74)
2 cd01793 Fubi Fubi ubiquitin-li 99.9 3.2E-21 6.8E-26 114.6 8.3 74 1-76 1-74 (74)
3 PTZ00044 ubiquitin; Provisiona 99.9 5.9E-21 1.3E-25 114.0 8.8 76 1-76 1-76 (76)
4 cd01806 Nedd8 Nebb8-like ubiq 99.8 1.9E-20 4.2E-25 111.6 9.1 76 1-76 1-76 (76)
5 cd01803 Ubiquitin Ubiquitin. U 99.8 1.6E-20 3.4E-25 112.0 8.6 76 1-76 1-76 (76)
6 cd01802 AN1_N ubiquitin-like d 99.8 1.6E-20 3.4E-25 118.0 8.4 76 1-76 28-103 (103)
7 cd01791 Ubl5 UBL5 ubiquitin-li 99.8 1.7E-20 3.7E-25 110.9 7.5 71 1-71 2-72 (73)
8 cd01804 midnolin_N Ubiquitin-l 99.8 2.5E-20 5.5E-25 111.7 7.8 76 1-77 2-77 (78)
9 cd01797 NIRF_N amino-terminal 99.8 4.4E-20 9.6E-25 110.6 8.1 74 1-74 1-76 (78)
10 cd01810 ISG15_repeat2 ISG15 ub 99.8 3.9E-20 8.5E-25 109.9 7.7 74 3-76 1-74 (74)
11 cd01805 RAD23_N Ubiquitin-like 99.8 1.9E-19 4.1E-24 107.7 8.8 73 1-73 1-75 (77)
12 cd01809 Scythe_N Ubiquitin-lik 99.8 2.9E-19 6.3E-24 105.4 8.3 72 1-72 1-72 (72)
13 cd01794 DC_UbP_C dendritic cel 99.8 1.7E-19 3.7E-24 105.9 6.9 69 3-71 1-69 (70)
14 cd01798 parkin_N amino-termina 99.8 2.9E-19 6.4E-24 105.0 7.1 70 3-72 1-70 (70)
15 cd01792 ISG15_repeat1 ISG15 ub 99.8 5.8E-19 1.2E-23 106.4 6.9 73 1-73 3-77 (80)
16 PF00240 ubiquitin: Ubiquitin 99.8 2.2E-18 4.9E-23 100.9 8.1 68 6-73 1-68 (69)
17 cd01808 hPLIC_N Ubiquitin-like 99.8 4E-18 8.6E-23 100.5 7.8 71 1-72 1-71 (71)
18 cd01800 SF3a120_C Ubiquitin-li 99.7 7.4E-18 1.6E-22 100.6 6.9 70 8-77 5-74 (76)
19 cd01796 DDI1_N DNA damage indu 99.7 8.3E-18 1.8E-22 99.1 7.0 68 3-70 1-70 (71)
20 cd01812 BAG1_N Ubiquitin-like 99.7 2E-17 4.3E-22 97.3 7.0 69 1-70 1-69 (71)
21 cd01790 Herp_N Homocysteine-re 99.7 2.4E-17 5.1E-22 98.2 6.8 71 1-71 2-78 (79)
22 cd01763 Sumo Small ubiquitin-r 99.7 1.1E-16 2.4E-21 97.8 8.9 76 1-76 12-87 (87)
23 cd01813 UBP_N UBP ubiquitin pr 99.7 8.9E-17 1.9E-21 95.3 7.2 69 1-70 1-72 (74)
24 KOG0005 Ubiquitin-like protein 99.7 5.3E-17 1.2E-21 89.6 4.1 69 1-69 1-69 (70)
25 smart00213 UBQ Ubiquitin homol 99.7 5.2E-16 1.1E-20 89.2 7.2 64 1-65 1-64 (64)
26 KOG0004 Ubiquitin/40S ribosoma 99.6 2.1E-16 4.5E-21 103.6 4.3 77 1-77 1-77 (156)
27 KOG0003 Ubiquitin/60s ribosoma 99.6 4.1E-17 8.9E-22 100.4 0.1 76 1-76 1-76 (128)
28 cd01802 AN1_N ubiquitin-like d 99.6 1.6E-15 3.5E-20 95.2 6.8 75 55-129 6-80 (103)
29 TIGR00601 rad23 UV excision re 99.6 2E-15 4.3E-20 113.8 8.3 73 1-73 1-76 (378)
30 cd01799 Hoil1_N Ubiquitin-like 99.6 3E-15 6.5E-20 88.9 6.3 65 6-71 8-74 (75)
31 cd01769 UBL Ubiquitin-like dom 99.5 5.4E-14 1.2E-18 81.8 6.7 67 5-71 2-68 (69)
32 PF11976 Rad60-SLD: Ubiquitin- 99.5 1E-13 2.2E-18 81.7 7.3 71 1-71 1-72 (72)
33 cd01815 BMSC_UbP_N Ubiquitin-l 99.5 2.3E-14 4.9E-19 84.3 4.3 53 19-71 19-74 (75)
34 cd01795 USP48_C USP ubiquitin- 99.5 6.5E-14 1.4E-18 85.6 5.9 62 12-73 16-78 (107)
35 KOG0010 Ubiquitin-like protein 99.5 4.9E-14 1.1E-18 107.3 5.8 73 1-74 16-88 (493)
36 cd01814 NTGP5 Ubiquitin-like N 99.5 8E-14 1.7E-18 87.4 5.0 73 2-74 6-92 (113)
37 cd01807 GDX_N ubiquitin-like d 99.4 2.6E-13 5.7E-18 80.4 4.8 53 77-129 1-53 (74)
38 KOG0005 Ubiquitin-like protein 99.4 1.5E-13 3.2E-18 76.1 3.3 52 78-129 2-53 (70)
39 cd01794 DC_UbP_C dendritic cel 99.4 2.1E-13 4.5E-18 80.0 4.1 51 80-130 2-52 (70)
40 KOG0011 Nucleotide excision re 99.4 6.5E-13 1.4E-17 96.8 7.0 74 1-74 1-76 (340)
41 PTZ00044 ubiquitin; Provisiona 99.4 6.2E-13 1.3E-17 79.1 5.0 53 77-129 1-53 (76)
42 cd01810 ISG15_repeat2 ISG15 ub 99.3 1.2E-12 2.7E-17 77.5 4.3 51 79-129 1-51 (74)
43 cd01793 Fubi Fubi ubiquitin-li 99.3 1.7E-12 3.6E-17 77.0 4.4 51 77-129 1-51 (74)
44 cd01796 DDI1_N DNA damage indu 99.3 2.5E-12 5.4E-17 75.6 4.8 51 79-129 1-52 (71)
45 cd01797 NIRF_N amino-terminal 99.3 2E-12 4.3E-17 77.4 4.3 53 77-129 1-55 (78)
46 cd01791 Ubl5 UBL5 ubiquitin-li 99.3 2.2E-12 4.7E-17 76.2 4.4 53 77-129 2-54 (73)
47 cd01798 parkin_N amino-termina 99.3 2.7E-12 5.9E-17 75.2 4.1 51 79-129 1-51 (70)
48 cd01789 Alp11_N Ubiquitin-like 99.3 1.7E-11 3.7E-16 74.3 7.7 71 2-72 3-81 (84)
49 cd01805 RAD23_N Ubiquitin-like 99.3 1.2E-11 2.7E-16 73.6 5.6 53 77-129 1-55 (77)
50 PF14560 Ubiquitin_2: Ubiquiti 99.3 4.4E-11 9.5E-16 73.0 7.6 71 2-72 3-83 (87)
51 KOG0003 Ubiquitin/60s ribosoma 99.2 2.8E-12 6.1E-17 79.1 1.6 51 78-128 2-52 (128)
52 cd01806 Nedd8 Nebb8-like ubiq 99.2 2.9E-11 6.3E-16 71.7 6.0 53 77-129 1-53 (76)
53 cd01809 Scythe_N Ubiquitin-lik 99.2 1.8E-11 3.8E-16 71.9 5.0 53 77-129 1-53 (72)
54 cd01803 Ubiquitin Ubiquitin. U 99.2 1.7E-11 3.8E-16 72.6 4.7 53 77-129 1-53 (76)
55 cd01790 Herp_N Homocysteine-re 99.2 2.4E-11 5.2E-16 72.4 5.2 53 77-129 2-58 (79)
56 cd01804 midnolin_N Ubiquitin-l 99.2 1.8E-11 3.9E-16 73.3 4.5 53 77-129 2-54 (78)
57 cd01792 ISG15_repeat1 ISG15 ub 99.2 1.9E-11 4E-16 73.5 3.7 53 77-129 3-57 (80)
58 PLN02560 enoyl-CoA reductase 99.2 8.2E-11 1.8E-15 86.9 7.5 69 1-69 1-80 (308)
59 PF00240 ubiquitin: Ubiquitin 99.2 7.9E-11 1.7E-15 68.6 5.8 46 82-127 1-46 (69)
60 cd01788 ElonginB Ubiquitin-lik 99.1 1.9E-10 4.1E-15 72.1 6.8 73 1-73 1-81 (119)
61 cd01812 BAG1_N Ubiquitin-like 99.1 1.2E-10 2.6E-15 68.2 4.8 51 78-129 2-52 (71)
62 KOG0004 Ubiquitin/40S ribosoma 99.1 2.9E-11 6.2E-16 79.6 2.0 52 77-128 1-52 (156)
63 KOG0001 Ubiquitin and ubiquiti 99.1 1.3E-09 2.8E-14 63.3 8.6 72 3-74 2-73 (75)
64 cd01808 hPLIC_N Ubiquitin-like 99.1 1.4E-10 3E-15 68.1 4.4 51 78-129 2-52 (71)
65 PF13881 Rad60-SLD_2: Ubiquiti 99.1 1.9E-09 4.1E-14 68.5 8.4 72 2-73 4-89 (111)
66 KOG4248 Ubiquitin-like protein 99.0 4E-10 8.7E-15 92.3 6.2 73 2-75 4-76 (1143)
67 cd01800 SF3a120_C Ubiquitin-li 99.0 2.7E-10 5.8E-15 67.8 3.9 46 84-129 5-50 (76)
68 smart00213 UBQ Ubiquitin homol 99.0 9.3E-10 2E-14 62.8 5.3 52 77-129 1-52 (64)
69 cd01801 Tsc13_N Ubiquitin-like 99.0 1.6E-09 3.5E-14 64.6 5.9 68 2-69 2-74 (77)
70 cd01813 UBP_N UBP ubiquitin pr 99.0 5.8E-10 1.3E-14 66.0 3.1 44 85-128 8-54 (74)
71 cd01799 Hoil1_N Ubiquitin-like 98.9 1.6E-09 3.6E-14 64.2 4.2 43 84-127 10-52 (75)
72 cd01763 Sumo Small ubiquitin-r 98.9 3.1E-09 6.7E-14 64.8 5.4 52 77-128 12-63 (87)
73 cd01811 OASL_repeat1 2'-5' oli 98.9 1.3E-08 2.7E-13 59.1 7.3 71 1-72 1-76 (80)
74 PF11543 UN_NPL4: Nuclear pore 98.9 3.7E-09 8E-14 63.4 5.0 69 1-70 5-78 (80)
75 TIGR00601 rad23 UV excision re 98.9 2.8E-09 6E-14 80.7 4.9 53 77-129 1-56 (378)
76 cd01795 USP48_C USP ubiquitin- 98.8 9.4E-09 2E-13 63.1 3.9 45 88-132 16-60 (107)
77 cd00196 UBQ Ubiquitin-like pro 98.8 6.8E-08 1.5E-12 53.7 7.0 67 5-71 2-68 (69)
78 KOG1769 Ubiquitin-like protein 98.7 2.9E-07 6.2E-12 56.5 8.2 76 2-77 22-97 (99)
79 KOG3493 Ubiquitin-like protein 98.7 1.1E-08 2.4E-13 57.6 1.7 69 2-70 3-71 (73)
80 KOG0011 Nucleotide excision re 98.6 3.5E-08 7.6E-13 72.4 4.2 53 77-129 1-55 (340)
81 cd01769 UBL Ubiquitin-like dom 98.5 1.4E-07 3.1E-12 54.3 4.4 48 81-128 2-49 (69)
82 cd01814 NTGP5 Ubiquitin-like N 98.5 1.1E-07 2.3E-12 59.9 3.0 50 80-129 8-65 (113)
83 cd01815 BMSC_UbP_N Ubiquitin-l 98.5 7.5E-08 1.6E-12 56.7 1.7 35 95-129 19-56 (75)
84 PF11976 Rad60-SLD: Ubiquitin- 98.4 1.3E-06 2.7E-11 51.1 6.7 52 77-128 1-53 (72)
85 KOG1872 Ubiquitin-specific pro 98.4 8E-07 1.7E-11 68.1 6.3 71 3-74 6-77 (473)
86 KOG0006 E3 ubiquitin-protein l 98.4 1.3E-06 2.9E-11 64.1 6.5 73 1-73 1-77 (446)
87 KOG4495 RNA polymerase II tran 98.2 3.4E-06 7.3E-11 51.4 4.2 62 1-62 1-65 (110)
88 KOG0001 Ubiquitin and ubiquiti 98.1 8.4E-06 1.8E-10 46.9 5.1 51 79-129 2-52 (75)
89 PF08817 YukD: WXG100 protein 98.1 1.5E-05 3.2E-10 47.6 5.5 68 2-69 4-78 (79)
90 KOG0010 Ubiquitin-like protein 98.1 4.4E-06 9.5E-11 64.5 3.9 51 77-128 16-66 (493)
91 PF11470 TUG-UBL1: GLUT4 regul 98.0 3.3E-05 7.2E-10 44.4 6.2 63 7-69 3-65 (65)
92 PF00789 UBX: UBX domain; Int 98.0 0.00012 2.7E-09 43.7 8.4 68 2-69 8-80 (82)
93 PF14560 Ubiquitin_2: Ubiquiti 98.0 3.9E-05 8.4E-10 46.6 6.2 44 79-122 4-49 (87)
94 COG5227 SMT3 Ubiquitin-like pr 97.9 2.5E-05 5.3E-10 47.1 4.0 71 2-72 26-96 (103)
95 PF13019 Telomere_Sde2: Telome 97.9 0.00013 2.8E-09 49.0 7.8 80 1-80 1-92 (162)
96 cd01789 Alp11_N Ubiquitin-like 97.8 8.5E-05 1.8E-09 44.9 5.7 39 86-124 12-51 (84)
97 smart00166 UBX Domain present 97.8 0.00024 5.2E-09 42.4 7.2 68 2-69 6-78 (80)
98 PLN02560 enoyl-CoA reductase 97.7 6.4E-05 1.4E-09 55.9 5.2 45 78-122 2-50 (308)
99 PF10302 DUF2407: DUF2407 ubiq 97.7 0.00012 2.5E-09 45.5 5.5 57 3-59 3-64 (97)
100 KOG4248 Ubiquitin-like protein 97.6 7.1E-05 1.5E-09 62.4 4.6 52 78-129 4-55 (1143)
101 cd01772 SAKS1_UBX SAKS1-like U 97.6 0.00074 1.6E-08 40.3 7.6 67 2-69 6-77 (79)
102 cd00196 UBQ Ubiquitin-like pro 97.6 0.00021 4.6E-09 39.0 4.8 44 85-128 6-49 (69)
103 PF14533 USP7_C2: Ubiquitin-sp 97.5 0.0021 4.6E-08 45.4 9.9 103 11-115 34-161 (213)
104 cd01770 p47_UBX p47-like ubiqu 97.5 0.0012 2.6E-08 39.4 7.2 64 2-65 6-73 (79)
105 KOG1639 Steroid reductase requ 97.4 0.00025 5.4E-09 50.7 4.6 69 1-69 1-76 (297)
106 cd01767 UBX UBX (ubiquitin reg 97.4 0.0016 3.5E-08 38.5 7.3 64 2-66 4-72 (77)
107 PF11543 UN_NPL4: Nuclear pore 97.4 0.00041 8.9E-09 41.5 4.5 44 78-122 6-49 (80)
108 cd01788 ElonginB Ubiquitin-lik 97.4 0.00048 1E-08 43.5 4.7 42 87-128 12-53 (119)
109 cd01773 Faf1_like1_UBX Faf1 ik 97.3 0.0032 7E-08 37.8 7.7 69 2-71 7-80 (82)
110 PF13881 Rad60-SLD_2: Ubiquiti 97.2 0.0013 2.9E-08 41.8 5.7 49 81-129 7-63 (111)
111 KOG0013 Uncharacterized conser 97.2 0.00074 1.6E-08 47.1 4.6 64 9-72 155-218 (231)
112 cd01811 OASL_repeat1 2'-5' oli 97.2 0.0014 3.1E-08 38.3 4.8 44 78-122 2-45 (80)
113 cd01771 Faf1_UBX Faf1 UBX doma 97.1 0.0051 1.1E-07 36.8 7.3 68 2-70 6-78 (80)
114 cd01774 Faf1_like2_UBX Faf1 ik 97.1 0.0077 1.7E-07 36.4 7.7 67 2-69 6-82 (85)
115 COG5417 Uncharacterized small 96.9 0.0096 2.1E-07 34.8 6.7 64 6-69 12-80 (81)
116 KOG0006 E3 ubiquitin-protein l 96.8 0.0026 5.6E-08 47.2 4.8 46 86-131 13-58 (446)
117 KOG3206 Alpha-tubulin folding 96.5 0.0095 2.1E-07 41.6 5.8 73 2-74 3-83 (234)
118 PF11470 TUG-UBL1: GLUT4 regul 96.5 0.0091 2E-07 34.2 4.7 44 84-127 4-47 (65)
119 PRK06437 hypothetical protein; 96.4 0.052 1.1E-06 31.2 7.6 60 4-72 4-63 (67)
120 cd06409 PB1_MUG70 The MUG70 pr 96.4 0.021 4.6E-07 34.6 6.0 45 2-46 2-49 (86)
121 PF09379 FERM_N: FERM N-termin 96.3 0.059 1.3E-06 31.7 7.7 62 5-66 1-69 (80)
122 KOG4583 Membrane-associated ER 96.2 0.0021 4.6E-08 47.9 1.1 71 2-72 11-87 (391)
123 PF14836 Ubiquitin_3: Ubiquiti 96.1 0.068 1.5E-06 32.5 7.3 64 12-76 15-84 (88)
124 cd06406 PB1_P67 A PB1 domain i 96.1 0.038 8.3E-07 32.9 6.0 45 3-49 5-49 (80)
125 PF10302 DUF2407: DUF2407 ubiq 96.1 0.017 3.8E-07 35.8 4.7 42 89-130 14-59 (97)
126 PF15044 CLU_N: Mitochondrial 95.9 0.015 3.3E-07 34.4 3.6 56 17-72 1-58 (76)
127 cd01801 Tsc13_N Ubiquitin-like 95.7 0.02 4.3E-07 33.8 3.7 35 94-128 20-57 (77)
128 PF12436 USP7_ICP0_bdg: ICP0-b 95.5 0.13 2.8E-06 37.3 8.1 106 15-120 89-223 (249)
129 PRK08364 sulfur carrier protei 95.4 0.21 4.5E-06 28.9 7.3 52 12-72 15-66 (70)
130 PRK06488 sulfur carrier protei 95.4 0.17 3.7E-06 28.7 6.8 63 1-74 1-63 (65)
131 KOG3493 Ubiquitin-like protein 95.4 0.0097 2.1E-07 33.8 1.4 39 81-119 6-44 (73)
132 PF13019 Telomere_Sde2: Telome 95.2 0.059 1.3E-06 36.4 5.1 45 77-121 1-50 (162)
133 cd06407 PB1_NLP A PB1 domain i 95.2 0.14 3E-06 30.7 6.2 46 1-47 1-47 (82)
134 cd00754 MoaD Ubiquitin domain 95.2 0.12 2.6E-06 30.3 5.9 59 12-75 17-79 (80)
135 KOG1872 Ubiquitin-specific pro 95.1 0.021 4.6E-07 44.4 3.0 46 84-129 10-56 (473)
136 smart00666 PB1 PB1 domain. Pho 94.8 0.21 4.6E-06 29.4 6.3 45 2-47 3-47 (81)
137 PF11620 GABP-alpha: GA-bindin 94.8 0.14 3.1E-06 30.7 5.4 59 13-71 5-63 (88)
138 cd06409 PB1_MUG70 The MUG70 pr 94.8 0.14 2.9E-06 31.1 5.3 43 79-121 3-48 (86)
139 PF12754 Blt1: Cell-cycle cont 94.5 0.01 2.2E-07 43.9 0.0 77 3-79 81-184 (309)
140 PF10790 DUF2604: Protein of U 94.4 0.26 5.7E-06 28.0 5.5 64 9-72 4-71 (76)
141 PLN02799 Molybdopterin synthas 94.1 0.25 5.4E-06 29.3 5.5 67 1-72 2-78 (82)
142 cd06406 PB1_P67 A PB1 domain i 94.1 0.19 4E-06 30.0 4.8 37 88-124 12-48 (80)
143 KOG4495 RNA polymerase II tran 93.8 0.098 2.1E-06 32.2 3.2 35 87-121 12-46 (110)
144 cd01760 RBD Ubiquitin-like dom 93.8 0.22 4.8E-06 29.1 4.7 44 80-123 3-46 (72)
145 PF02196 RBD: Raf-like Ras-bin 93.7 0.68 1.5E-05 26.9 6.6 52 79-130 3-54 (71)
146 KOG1769 Ubiquitin-like protein 93.6 0.36 7.7E-06 29.9 5.5 51 77-127 21-71 (99)
147 cd06408 PB1_NoxR The PB1 domai 93.4 0.81 1.8E-05 27.7 6.8 53 2-58 4-56 (86)
148 smart00455 RBD Raf-like Ras-bi 93.4 0.32 6.9E-06 28.2 4.8 43 81-123 4-46 (70)
149 TIGR01682 moaD molybdopterin c 93.0 0.89 1.9E-05 26.7 6.6 59 12-75 17-79 (80)
150 KOG0012 DNA damage inducible p 92.9 0.16 3.4E-06 38.5 3.8 75 1-75 1-79 (380)
151 PRK05863 sulfur carrier protei 92.9 0.75 1.6E-05 26.1 5.9 61 1-72 1-61 (65)
152 KOG2086 Protein tyrosine phosp 92.9 0.31 6.7E-06 37.2 5.4 65 2-66 307-375 (380)
153 TIGR02958 sec_mycoba_snm4 secr 92.8 0.62 1.3E-05 36.7 7.1 73 2-75 4-83 (452)
154 PF02597 ThiS: ThiS family; I 92.8 0.88 1.9E-05 26.2 6.3 62 12-75 13-76 (77)
155 cd01760 RBD Ubiquitin-like dom 92.6 0.71 1.5E-05 26.9 5.6 44 3-46 2-45 (72)
156 TIGR01687 moaD_arch MoaD famil 92.5 0.88 1.9E-05 27.2 6.2 61 11-75 16-87 (88)
157 PF09379 FERM_N: FERM N-termin 92.4 0.33 7.1E-06 28.4 4.2 33 81-113 1-33 (80)
158 KOG0013 Uncharacterized conser 92.3 0.16 3.4E-06 35.8 2.9 45 85-129 155-199 (231)
159 smart00295 B41 Band 4.1 homolo 92.2 2.2 4.7E-05 29.2 8.7 71 2-72 5-83 (207)
160 smart00455 RBD Raf-like Ras-bi 92.2 0.93 2E-05 26.2 5.8 49 3-51 2-52 (70)
161 smart00166 UBX Domain present 91.9 0.8 1.7E-05 27.0 5.4 43 78-120 6-48 (80)
162 PRK05659 sulfur carrier protei 91.8 1.4 3E-05 24.8 7.2 62 1-72 1-62 (66)
163 PF00564 PB1: PB1 domain; Int 91.7 0.94 2E-05 26.6 5.6 44 2-46 3-47 (84)
164 KOG4250 TANK binding protein k 91.4 0.37 8E-06 39.7 4.5 43 83-125 321-363 (732)
165 cd05992 PB1 The PB1 domain is 91.1 1.4 3E-05 25.7 5.9 45 2-47 2-47 (81)
166 KOG4261 Talin [Cytoskeleton] 90.6 1.4 3E-05 37.0 7.0 101 10-113 12-121 (1003)
167 PF14453 ThiS-like: ThiS-like 90.5 1.7 3.6E-05 24.2 5.3 54 1-70 1-54 (57)
168 PF02196 RBD: Raf-like Ras-bin 90.4 2.2 4.8E-05 24.7 7.1 56 3-58 3-60 (71)
169 PF00789 UBX: UBX domain; Int 90.3 1.5 3.2E-05 25.8 5.5 44 77-120 7-51 (82)
170 KOG4250 TANK binding protein k 90.1 0.95 2.1E-05 37.4 5.7 42 9-50 323-364 (732)
171 PF10209 DUF2340: Uncharacteri 89.8 1.1 2.5E-05 28.8 4.8 57 16-72 21-108 (122)
172 cd00565 ThiS ThiaminS ubiquiti 89.7 2.1 4.6E-05 24.0 5.6 60 9-75 5-64 (65)
173 cd06411 PB1_p51 The PB1 domain 89.7 1.1 2.4E-05 26.6 4.4 35 12-46 8-42 (78)
174 cd06396 PB1_NBR1 The PB1 domai 89.5 3.1 6.6E-05 24.9 6.4 41 2-45 2-44 (81)
175 cd01773 Faf1_like1_UBX Faf1 ik 89.1 2.4 5.1E-05 25.4 5.6 42 78-120 7-48 (82)
176 smart00666 PB1 PB1 domain. Pho 88.9 2.5 5.4E-05 24.6 5.7 39 85-123 9-47 (81)
177 smart00295 B41 Band 4.1 homolo 88.7 1.4 3E-05 30.2 5.2 38 77-114 4-41 (207)
178 cd01774 Faf1_like2_UBX Faf1 ik 88.5 2.8 6.1E-05 25.2 5.8 44 77-121 5-48 (85)
179 PRK06944 sulfur carrier protei 88.5 2.9 6.3E-05 23.3 6.8 63 1-74 1-63 (65)
180 cd01770 p47_UBX p47-like ubiqu 87.3 1.9 4.2E-05 25.5 4.5 51 77-127 5-58 (79)
181 TIGR01683 thiS thiamine biosyn 87.3 3.6 7.9E-05 23.0 5.8 59 9-74 4-62 (64)
182 KOG2689 Predicted ubiquitin re 87.0 2.6 5.7E-05 31.0 5.8 68 2-69 212-284 (290)
183 PRK06083 sulfur carrier protei 87.0 4.6 0.0001 24.2 6.1 57 9-72 24-80 (84)
184 PRK08053 sulfur carrier protei 87.0 3.9 8.5E-05 23.1 6.9 63 1-73 1-63 (66)
185 cd06410 PB1_UP2 Uncharacterize 85.8 5.4 0.00012 24.6 6.1 40 6-46 18-57 (97)
186 cd01817 RGS12_RBD Ubiquitin do 85.6 3.1 6.8E-05 24.3 4.6 43 82-124 5-47 (73)
187 cd01767 UBX UBX (ubiquitin reg 85.4 5.3 0.00012 23.2 5.8 42 78-120 4-45 (77)
188 PRK07696 sulfur carrier protei 84.7 5.4 0.00012 22.7 7.2 62 1-72 1-63 (67)
189 cd01777 SNX27_RA Ubiquitin dom 84.0 2.6 5.6E-05 25.6 3.9 40 79-118 4-43 (87)
190 cd06411 PB1_p51 The PB1 domain 83.6 3.3 7.2E-05 24.6 4.2 38 88-125 8-45 (78)
191 COG5100 NPL4 Nuclear pore prot 83.6 7.3 0.00016 30.4 7.0 71 1-72 1-79 (571)
192 cd01787 GRB7_RA RA (RAS-associ 83.2 6.8 0.00015 23.7 5.5 55 3-57 5-66 (85)
193 PTZ00380 microtubule-associate 82.7 1.7 3.6E-05 28.1 2.9 58 15-72 45-105 (121)
194 cd06407 PB1_NLP A PB1 domain i 82.5 5.2 0.00011 23.9 4.8 37 85-121 8-45 (82)
195 cd01768 RA RA (Ras-associating 82.3 6.3 0.00014 23.3 5.3 36 85-120 11-48 (87)
196 PF14732 UAE_UbL: Ubiquitin/SU 82.2 4.1 8.8E-05 24.6 4.3 57 15-71 2-68 (87)
197 cd01772 SAKS1_UBX SAKS1-like U 81.7 7.3 0.00016 22.9 5.3 34 78-111 6-39 (79)
198 PRK07440 hypothetical protein; 81.7 7.8 0.00017 22.3 6.4 57 9-72 10-66 (70)
199 KOG2982 Uncharacterized conser 81.2 2.3 5E-05 32.2 3.5 56 15-70 352-415 (418)
200 KOG0007 Splicing factor 3a, su 81.1 0.79 1.7E-05 34.7 1.1 49 8-56 290-339 (341)
201 PF14533 USP7_C2: Ubiquitin-sp 80.9 1.7 3.6E-05 30.7 2.7 29 10-38 132-160 (213)
202 cd01818 TIAM1_RBD Ubiquitin do 80.9 5.9 0.00013 23.4 4.4 42 81-122 4-45 (77)
203 cd01766 Ufm1 Urm1-like ubiquit 80.7 9.2 0.0002 22.4 5.7 59 15-73 20-79 (82)
204 PF00564 PB1: PB1 domain; Int 80.5 9.1 0.0002 22.3 5.6 33 90-122 15-47 (84)
205 cd01771 Faf1_UBX Faf1 UBX doma 80.0 10 0.00022 22.5 5.7 43 77-120 5-47 (80)
206 cd06398 PB1_Joka2 The PB1 doma 80.0 11 0.00024 22.9 6.6 44 3-47 3-52 (91)
207 KOG4583 Membrane-associated ER 78.3 0.9 2E-05 34.3 0.6 51 79-129 12-66 (391)
208 PF10407 Cytokin_check_N: Cdc1 78.3 8.8 0.00019 22.5 4.7 60 11-71 3-69 (73)
209 PF00276 Ribosomal_L23: Riboso 78.0 8.5 0.00018 23.4 4.8 40 11-50 21-61 (91)
210 PF14451 Ub-Mut7C: Mut7-C ubiq 76.8 13 0.00029 22.1 5.7 53 10-71 22-75 (81)
211 KOG4572 Predicted DNA-binding 76.3 6.4 0.00014 33.6 5.0 62 9-70 3-68 (1424)
212 cd01818 TIAM1_RBD Ubiquitin do 75.9 14 0.0003 21.8 5.4 38 4-41 3-40 (77)
213 PF02017 CIDE-N: CIDE-N domain 75.8 11 0.00023 22.4 4.6 39 21-59 21-61 (78)
214 PF08783 DWNN: DWNN domain; I 75.7 14 0.0003 21.7 5.2 31 6-36 4-36 (74)
215 KOG3439 Protein conjugation fa 75.6 14 0.0003 23.5 5.3 38 13-50 47-84 (116)
216 cd01787 GRB7_RA RA (RAS-associ 75.6 11 0.00024 22.7 4.7 37 79-115 5-41 (85)
217 PF00788 RA: Ras association ( 75.5 14 0.0003 21.7 5.7 32 88-119 18-51 (93)
218 cd05992 PB1 The PB1 domain is 75.1 9.7 0.00021 22.0 4.5 37 86-122 9-46 (81)
219 PF03671 Ufm1: Ubiquitin fold 74.6 15 0.00032 21.5 6.2 56 14-69 19-75 (76)
220 KOG3439 Protein conjugation fa 74.2 15 0.00032 23.4 5.1 50 66-121 30-79 (116)
221 TIGR03636 L23_arch archaeal ri 73.7 12 0.00026 22.1 4.5 33 11-43 15-47 (77)
222 COG5227 SMT3 Ubiquitin-like pr 73.3 18 0.0004 22.1 5.5 50 78-127 26-75 (103)
223 PF08337 Plexin_cytopl: Plexin 73.0 12 0.00025 30.5 5.6 64 11-74 202-291 (539)
224 PRK05738 rplW 50S ribosomal pr 72.9 11 0.00023 23.1 4.3 40 10-49 20-60 (92)
225 PRK11840 bifunctional sulfur c 72.5 22 0.00048 27.0 6.6 67 1-77 1-67 (326)
226 PF00788 RA: Ras association ( 72.3 17 0.00037 21.3 5.7 41 3-43 5-51 (93)
227 cd01777 SNX27_RA Ubiquitin dom 72.1 19 0.0004 21.9 5.1 40 2-41 3-42 (87)
228 smart00314 RA Ras association 71.7 18 0.0004 21.4 5.5 36 85-120 14-51 (90)
229 cd06410 PB1_UP2 Uncharacterize 71.0 20 0.00043 22.1 5.2 40 81-121 17-56 (97)
230 smart00266 CAD Domains present 70.8 16 0.00035 21.5 4.5 47 12-59 11-59 (74)
231 KOG2561 Adaptor protein NUB1, 70.6 2.9 6.3E-05 33.0 1.7 59 14-72 53-111 (568)
232 KOG4598 Putative ubiquitin-spe 69.8 13 0.00028 31.4 5.2 93 12-106 878-988 (1203)
233 cd01615 CIDE_N CIDE_N domain, 69.5 17 0.00036 21.6 4.4 40 20-59 20-61 (78)
234 KOG2507 Ubiquitin regulatory p 69.4 8.9 0.00019 30.1 4.0 72 2-73 316-392 (506)
235 COG0089 RplW Ribosomal protein 69.2 15 0.00033 22.6 4.4 34 10-43 21-54 (94)
236 cd01611 GABARAP Ubiquitin doma 69.0 13 0.00028 23.6 4.2 45 15-59 45-90 (112)
237 PRK14548 50S ribosomal protein 69.0 18 0.0004 21.7 4.6 34 11-44 22-55 (84)
238 COG0299 PurN Folate-dependent 68.5 12 0.00027 26.2 4.3 43 63-111 132-174 (200)
239 PF14847 Ras_bdg_2: Ras-bindin 67.7 13 0.00029 23.3 4.0 36 79-114 3-38 (105)
240 PF11069 DUF2870: Protein of u 67.4 6.2 0.00013 24.4 2.4 30 42-72 3-34 (98)
241 KOG0007 Splicing factor 3a, su 66.9 2.3 4.9E-05 32.3 0.5 47 83-129 289-336 (341)
242 PF12436 USP7_ICP0_bdg: ICP0-b 66.9 23 0.00051 25.6 5.7 35 10-44 189-223 (249)
243 cd06396 PB1_NBR1 The PB1 domai 66.7 25 0.00054 21.0 5.2 30 84-113 7-38 (81)
244 PF02991 Atg8: Autophagy prote 66.2 21 0.00045 22.4 4.7 58 15-72 37-98 (104)
245 smart00144 PI3K_rbd PI3-kinase 65.4 31 0.00067 21.6 8.0 62 11-72 29-104 (108)
246 PF06234 TmoB: Toluene-4-monoo 65.3 28 0.0006 21.0 6.8 59 13-71 17-83 (85)
247 cd01768 RA RA (Ras-associating 65.0 26 0.00056 20.5 6.0 35 10-44 12-48 (87)
248 cd06539 CIDE_N_A CIDE_N domain 64.8 21 0.00045 21.2 4.2 40 20-59 20-61 (78)
249 cd01775 CYR1_RA Ubiquitin doma 63.8 32 0.0007 21.3 5.2 36 3-38 5-40 (97)
250 PF00794 PI3K_rbd: PI3-kinase 62.6 34 0.00074 21.1 5.9 70 2-71 18-101 (106)
251 cd01817 RGS12_RBD Ubiquitin do 61.6 30 0.00066 20.2 7.4 47 5-51 4-52 (73)
252 PF04023 FeoA: FeoA domain; I 61.4 18 0.00038 20.5 3.5 37 54-91 26-62 (74)
253 CHL00030 rpl23 ribosomal prote 61.3 26 0.00056 21.5 4.3 34 10-43 19-52 (93)
254 smart00314 RA Ras association 60.3 33 0.00072 20.2 5.4 35 10-44 15-51 (90)
255 PTZ00380 microtubule-associate 59.1 39 0.00084 21.8 5.0 36 88-123 42-77 (121)
256 PF10787 YfmQ: Uncharacterised 57.6 39 0.00085 22.4 4.9 87 19-105 23-123 (149)
257 cd01764 Urm1 Urm1-like ubuitin 56.8 32 0.00069 21.0 4.2 58 16-75 24-93 (94)
258 PRK11130 moaD molybdopterin sy 56.6 38 0.00083 19.7 6.4 55 15-74 19-79 (81)
259 PF02192 PI3K_p85B: PI3-kinase 56.0 21 0.00046 21.1 3.2 22 13-34 2-23 (78)
260 PF11834 DUF3354: Domain of un 54.4 20 0.00043 20.7 2.8 43 21-69 26-68 (69)
261 KOG1364 Predicted ubiquitin re 53.1 15 0.00033 28.0 2.7 65 2-66 279-349 (356)
262 KOG3206 Alpha-tubulin folding 52.5 19 0.00041 25.6 3.0 32 89-120 15-46 (234)
263 KOG4572 Predicted DNA-binding 52.4 22 0.00047 30.6 3.7 40 85-124 3-43 (1424)
264 PF08825 E2_bind: E2 binding d 51.8 25 0.00055 21.0 3.1 56 15-71 1-70 (84)
265 cd06536 CIDE_N_ICAD CIDE_N dom 51.5 38 0.00083 20.2 3.8 40 20-59 20-63 (80)
266 cd01776 Rin1_RA Ubiquitin doma 50.6 43 0.00094 20.1 3.9 34 87-120 14-48 (87)
267 PF14836 Ubiquitin_3: Ubiquiti 50.1 57 0.0012 19.8 4.5 33 87-120 14-46 (88)
268 PRK12280 rplW 50S ribosomal pr 49.8 47 0.001 22.5 4.4 39 10-48 22-61 (158)
269 cd06397 PB1_UP1 Uncharacterize 49.2 56 0.0012 19.5 5.8 43 3-46 3-45 (82)
270 KOG3076 5'-phosphoribosylglyci 49.0 33 0.00072 24.1 3.7 43 63-111 140-182 (206)
271 cd01666 TGS_DRG_C TGS_DRG_C: 48.9 53 0.0012 19.2 4.8 34 1-34 2-38 (75)
272 cd06408 PB1_NoxR The PB1 domai 48.5 60 0.0013 19.6 5.4 29 85-113 10-38 (86)
273 cd06398 PB1_Joka2 The PB1 doma 47.4 63 0.0014 19.6 5.0 36 86-121 9-50 (91)
274 PF03931 Skp1_POZ: Skp1 family 47.2 17 0.00037 20.1 1.8 32 1-32 1-32 (62)
275 PRK01777 hypothetical protein; 46.9 67 0.0014 19.7 7.4 50 13-71 19-75 (95)
276 PF01376 Enterotoxin_b: Heat-l 46.7 35 0.00075 20.5 3.1 31 3-33 38-68 (102)
277 PRK08453 fliD flagellar cappin 46.6 73 0.0016 26.8 5.9 25 9-33 136-160 (673)
278 cd01782 AF6_RA_repeat1 Ubiquit 46.5 75 0.0016 20.2 5.0 37 1-37 24-62 (112)
279 smart00143 PI3K_p85B PI3-kinas 46.1 32 0.00068 20.4 2.9 22 13-34 2-23 (78)
280 PRK05738 rplW 50S ribosomal pr 45.5 45 0.00098 20.3 3.6 33 86-118 20-52 (92)
281 PF11816 DUF3337: Domain of un 45.1 65 0.0014 24.4 5.1 55 19-73 256-328 (331)
282 PF02824 TGS: TGS domain; Int 44.9 53 0.0012 18.0 6.2 58 3-69 1-58 (60)
283 cd06538 CIDE_N_FSP27 CIDE_N do 44.1 61 0.0013 19.3 3.8 40 20-59 20-60 (79)
284 PLN02828 formyltetrahydrofolat 43.5 7.8 0.00017 28.5 0.0 41 89-129 220-261 (268)
285 KOG2086 Protein tyrosine phosp 42.6 69 0.0015 24.9 4.9 52 78-129 307-361 (380)
286 PF13180 PDZ_2: PDZ domain; PD 42.1 65 0.0014 18.5 3.9 43 31-73 27-71 (82)
287 cd06537 CIDE_N_B CIDE_N domain 40.9 71 0.0015 19.1 3.8 39 20-59 20-60 (81)
288 KOG2660 Locus-specific chromos 40.4 24 0.00052 26.8 2.1 46 14-59 167-214 (331)
289 KOG2689 Predicted ubiquitin re 40.0 69 0.0015 23.8 4.3 37 78-114 212-248 (290)
290 PF14847 Ras_bdg_2: Ras-bindin 39.5 84 0.0018 19.7 4.2 36 3-38 3-38 (105)
291 cd01775 CYR1_RA Ubiquitin doma 39.0 95 0.0021 19.2 5.6 33 83-115 9-41 (97)
292 PF12754 Blt1: Cell-cycle cont 36.8 11 0.00025 28.2 0.0 31 96-126 103-148 (309)
293 PTZ00191 60S ribosomal protein 36.8 1E+02 0.0022 20.6 4.4 33 11-43 83-115 (145)
294 KOG3852 Uncharacterized conser 36.7 29 0.00063 26.3 2.1 40 84-132 192-231 (426)
295 cd01816 Raf_RBD Ubiquitin doma 36.4 92 0.002 18.3 4.7 42 3-44 2-43 (74)
296 PRK13011 formyltetrahydrofolat 36.3 60 0.0013 24.1 3.7 23 89-111 238-260 (286)
297 KOG3391 Transcriptional co-rep 35.1 27 0.00059 23.0 1.5 27 49-75 113-139 (151)
298 PF04126 Cyclophil_like: Cyclo 34.3 38 0.00083 21.6 2.1 29 1-30 1-29 (120)
299 cd01612 APG12_C Ubiquitin-like 34.1 1.1E+02 0.0023 18.4 4.7 58 14-71 19-80 (87)
300 TIGR00655 PurU formyltetrahydr 33.7 69 0.0015 23.7 3.6 23 89-111 233-255 (280)
301 PF08756 YfkB: YfkB-like domai 33.3 47 0.001 22.1 2.4 80 19-100 11-97 (153)
302 PF02505 MCR_D: Methyl-coenzym 33.1 1.5E+02 0.0034 19.9 5.0 43 13-59 77-120 (153)
303 TIGR03260 met_CoM_red_D methyl 30.7 1.7E+02 0.0037 19.7 4.9 43 13-59 76-118 (150)
304 PF08299 Bac_DnaA_C: Bacterial 30.6 25 0.00054 20.1 0.8 19 22-40 1-19 (70)
305 KOG4147 Uncharacterized conser 30.5 56 0.0012 20.7 2.3 23 48-70 88-111 (127)
306 KOG3483 Uncharacterized conser 30.0 1.2E+02 0.0027 17.9 4.9 59 15-73 31-90 (94)
307 PRK13010 purU formyltetrahydro 29.4 86 0.0019 23.3 3.6 24 88-111 241-264 (289)
308 COG1918 FeoA Fe2+ transport sy 28.9 67 0.0014 18.8 2.4 31 54-84 25-55 (75)
309 COG3760 Uncharacterized conser 28.0 62 0.0013 21.8 2.3 56 2-67 47-102 (164)
310 PF09469 Cobl: Cordon-bleu ubi 27.0 47 0.001 19.7 1.5 34 30-63 3-39 (79)
311 PF01096 TFIIS_C: Transcriptio 26.8 54 0.0012 16.4 1.5 12 122-133 23-34 (39)
312 cd05484 retropepsin_like_LTR_2 26.4 66 0.0014 18.9 2.2 42 9-50 8-53 (91)
313 PF13670 PepSY_2: Peptidase pr 26.3 1.3E+02 0.0027 17.5 3.3 20 2-21 57-76 (83)
314 COG2104 ThiS Sulfur transfer p 25.9 1.4E+02 0.003 17.1 7.5 62 2-71 2-63 (68)
315 PRK09555 feoA ferrous iron tra 25.9 84 0.0018 18.2 2.4 30 54-83 24-53 (74)
316 KOG0012 DNA damage inducible p 24.8 92 0.002 24.1 3.0 47 85-131 11-57 (380)
317 smart00760 Bac_DnaA_C Bacteria 24.5 49 0.0011 18.0 1.2 19 22-40 1-19 (60)
318 PF09865 DUF2092: Predicted pe 24.4 2.6E+02 0.0057 19.8 6.6 29 93-121 86-114 (214)
319 PF04110 APG12: Ubiquitin-like 24.2 1.7E+02 0.0038 17.6 5.4 29 89-117 18-46 (87)
320 PTZ00490 Ferredoxin superfamil 24.2 1.7E+02 0.0037 19.4 3.9 26 2-27 37-62 (143)
321 smart00440 ZnF_C2C2 C2C2 Zinc 24.2 63 0.0014 16.3 1.5 12 122-133 23-34 (40)
322 COG3900 Predicted periplasmic 23.9 2.8E+02 0.006 20.2 5.1 28 93-120 121-148 (262)
323 PLN02593 adrenodoxin-like ferr 23.2 2.1E+02 0.0045 18.1 4.2 27 1-27 1-27 (117)
324 TIGR02008 fdx_plant ferredoxin 22.5 1.9E+02 0.0041 17.4 3.8 26 2-27 4-29 (97)
325 COG2080 CoxS Aerobic-type carb 21.8 1.5E+02 0.0033 20.0 3.3 56 1-57 2-64 (156)
326 cd06404 PB1_aPKC PB1 domain is 21.7 2E+02 0.0043 17.3 6.5 44 2-46 2-46 (83)
327 COG5131 URM1 Ubiquitin-like pr 21.5 2.1E+02 0.0045 17.5 5.5 64 11-75 18-95 (96)
328 PF13699 DUF4157: Domain of un 20.9 1.9E+02 0.0041 16.9 3.8 46 24-69 4-49 (79)
329 PRK10872 relA (p)ppGpp synthet 20.9 3E+02 0.0065 23.6 5.5 64 2-74 405-468 (743)
330 PF01187 MIF: Macrophage migra 20.7 1.3E+02 0.0028 18.7 2.8 25 23-47 76-100 (114)
331 PF13439 Glyco_transf_4: Glyco 20.4 1.1E+02 0.0025 19.3 2.6 27 24-51 148-174 (177)
332 PF02563 Poly_export: Polysacc 20.4 1.3E+02 0.0027 17.5 2.5 54 56-111 8-68 (82)
333 PF02037 SAP: SAP domain; Int 20.4 1.2E+02 0.0027 14.6 2.1 18 20-38 3-20 (35)
334 COG5222 Uncharacterized conser 20.0 3.8E+02 0.0082 20.4 5.3 34 15-48 18-54 (427)
No 1
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.86 E-value=1.6e-21 Score=115.97 Aligned_cols=73 Identities=36% Similarity=0.653 Sum_probs=71.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEe
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (134)
|+|+||..+|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+++++++..++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998874
No 2
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.86 E-value=3.2e-21 Score=114.64 Aligned_cols=74 Identities=41% Similarity=0.618 Sum_probs=70.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecc
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (134)
|+|+||.. +.+.++|++++||+++|++|++..|+|+++|+|+|+|++|+|+.+|++|++++++++++.+++.||
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 89999984 789999999999999999999999999999999999999999999999999999999999998765
No 3
>PTZ00044 ubiquitin; Provisional
Probab=99.85 E-value=5.9e-21 Score=113.96 Aligned_cols=76 Identities=50% Similarity=0.822 Sum_probs=73.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecc
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (134)
|+|+||..+|+.+.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|++.+++++++.+++.+|
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg 76 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987664
No 4
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.84 E-value=1.9e-20 Score=111.57 Aligned_cols=76 Identities=55% Similarity=0.965 Sum_probs=73.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecc
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (134)
|+|+|+..+|+.+.+++++++||.+||++|++..|+|+++|+|.|+|+.|.|+.+|++|++.+|++|++..+.++|
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987664
No 5
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.84 E-value=1.6e-20 Score=111.96 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecc
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (134)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|.|+|+.|+|+.+|++|++.+|+++++.+++.||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999997765
No 6
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.84 E-value=1.6e-20 Score=117.96 Aligned_cols=76 Identities=51% Similarity=0.763 Sum_probs=73.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecc
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (134)
|+|+|+..+|+.+.++|++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|++.++++|++.++++||
T Consensus 28 M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~~l~GG 103 (103)
T cd01802 28 MELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVLAMRGG 103 (103)
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEecCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999987765
No 7
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.83 E-value=1.7e-20 Score=110.92 Aligned_cols=71 Identities=24% Similarity=0.378 Sum_probs=68.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEE
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (134)
|+|+|++..|+.+.+++++++||++||++|++..|+|+++|+|.|.|+.|+|+.+|++||+.+|++||+..
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999999864
No 8
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.83 E-value=2.5e-20 Score=111.75 Aligned_cols=76 Identities=25% Similarity=0.479 Sum_probs=72.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecce
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 77 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 77 (134)
|+|+|+...|+.+.+++++++||++||++|++..++|+++|+|.|.|+.|+|+ +|++||+.+|++|+++..+++|.
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~~ 77 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAGL 77 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccccC
Confidence 79999999999999999999999999999999999999999999999999998 99999999999999999887764
No 9
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.83 E-value=4.4e-20 Score=110.58 Aligned_cols=74 Identities=36% Similarity=0.634 Sum_probs=70.3
Q ss_pred CEEEEEeCCCCE-EEEE-EcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEee
Q 032747 1 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (134)
Q Consensus 1 m~i~v~~~~g~~-~~~~-v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (134)
|+|+||+.+|+. +.++ +++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|++.++++|++.+++.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 899999999997 6895 8999999999999999999999999999999999999999999999999999998864
No 10
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.83 E-value=3.9e-20 Score=109.92 Aligned_cols=74 Identities=32% Similarity=0.618 Sum_probs=70.7
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecc
Q 032747 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (134)
Q Consensus 3 i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (134)
|+||+.+|+.+.+++++++||.+||++|++..|+|+++|+|.|+|+.|.|+.+|++|++++++++++..++.+|
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999887654
No 11
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.81 E-value=1.9e-19 Score=107.66 Aligned_cols=73 Identities=38% Similarity=0.705 Sum_probs=70.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCC--CCCceEEEEcCEEcCCCCCccccccccccceEEEEEe
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi--~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (134)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+ |+++|+|.|+|+.|+|+.+|++|++.+|+++++.++.
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 899999999999999999999999999999999999 9999999999999999999999999999999988764
No 12
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.80 E-value=2.9e-19 Score=105.42 Aligned_cols=72 Identities=44% Similarity=0.704 Sum_probs=69.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEE
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|.|+|+.|+|+.+|++|++++|+++++..+
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 799999999999999999999999999999999999999999999999999999999999999999998653
No 13
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.80 E-value=1.7e-19 Score=105.91 Aligned_cols=69 Identities=36% Similarity=0.587 Sum_probs=66.1
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEE
Q 032747 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 3 i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (134)
+.|+..+|+.+.+++++++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|++.++++|++.+
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 468899999999999999999999999999999999999999999999999999999999999999875
No 14
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.80 E-value=2.9e-19 Score=105.04 Aligned_cols=70 Identities=39% Similarity=0.733 Sum_probs=66.9
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEE
Q 032747 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 3 i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
|+|+..+|+.+.+++++++||+++|++|++..|+|+++|+|+|+|++|+|+.+|++|++.+++++|+..|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 5789999999999999999999999999999999999999999999999999999999999999998753
No 15
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.78 E-value=5.8e-19 Score=106.37 Aligned_cols=73 Identities=32% Similarity=0.431 Sum_probs=69.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEE--EEcCEEcCCCCCccccccccccceEEEEEe
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L--~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (134)
|+|+|+..+|+.+.+++++++||.+||++|++..|+|+++|+| .|+|+.|+|+.+|++||+.+|++|++.++.
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 6899999999999999999999999999999999999999999 789999999999999999999999998873
No 16
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.77 E-value=2.2e-18 Score=100.89 Aligned_cols=68 Identities=56% Similarity=0.962 Sum_probs=64.9
Q ss_pred EeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEe
Q 032747 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (134)
Q Consensus 6 ~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (134)
|+.+|+.+.+++++++||.+||++|++..++|++.|+|+|+|+.|+|+.+|++||+.+|++|++..++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 56789999999999999999999999999999999999999999999999999999999999998764
No 17
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.76 E-value=4e-18 Score=100.47 Aligned_cols=71 Identities=34% Similarity=0.489 Sum_probs=66.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEE
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
|.|+|++..|+ ..+++++++||.+||++|++..|+|+++|+|.|+|+.|+|+.+|++||+.+|++|++.++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 57999999987 589999999999999999999999999999999999999999999999999999998764
No 18
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.74 E-value=7.4e-18 Score=100.56 Aligned_cols=70 Identities=33% Similarity=0.666 Sum_probs=66.1
Q ss_pred CCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecce
Q 032747 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 77 (134)
Q Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 77 (134)
++|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++.+++.+|.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg~ 74 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGGR 74 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCCc
Confidence 4689999999999999999999999999999999999999999999999999999999999999987653
No 19
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.74 E-value=8.3e-18 Score=99.09 Aligned_cols=68 Identities=35% Similarity=0.543 Sum_probs=63.9
Q ss_pred EEEEeC-CCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCC-CCccccccccccceEEE
Q 032747 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV 70 (134)
Q Consensus 3 i~v~~~-~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~-~~L~~~~i~~~~~i~l~ 70 (134)
|+|+.. +|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+ .+|++||+.+|+++++.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 578899 899999999999999999999999999999999999999999887 68999999999999874
No 20
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.72 E-value=2e-17 Score=97.30 Aligned_cols=69 Identities=29% Similarity=0.490 Sum_probs=65.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEE
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 70 (134)
|+|+|+.. |+.+.+++++++||.+||++|++.+|+|+++|+|.|+|+.|.|+.+|++||+.+|++|++.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEe
Confidence 68999996 8999999999999999999999999999999999999999999999999999999999875
No 21
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.72 E-value=2.4e-17 Score=98.22 Aligned_cols=71 Identities=24% Similarity=0.267 Sum_probs=63.0
Q ss_pred CEEEEEeCCCCEEE--EEEcCCCcHHHHHHHHHhhhC--CCCCceEEEEcCEEcCCCCCccccc--cccccceEEEE
Q 032747 1 MQIFVKTLTGKTIT--LEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL 71 (134)
Q Consensus 1 m~i~v~~~~g~~~~--~~v~~~~tv~~lK~~i~~~~g--i~~~~q~L~~~g~~L~d~~~L~~~~--i~~~~~i~l~~ 71 (134)
|.++||+++++.+. +++++++||.+||++|++..+ .++++|+|+|.|+.|+|+.+|++|. +.++.++||+.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 57899999999855 555899999999999999874 4579999999999999999999996 89999999874
No 22
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.71 E-value=1.1e-16 Score=97.84 Aligned_cols=76 Identities=18% Similarity=0.467 Sum_probs=73.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecc
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (134)
|.|+|++.+|+...+.|.+++++..||++++++.|+|+++|+|+|+|+.|+++.|+++|++.++++|++.+++.||
T Consensus 12 i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 12 INLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred EEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999988765
No 23
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.70 E-value=8.9e-17 Score=95.32 Aligned_cols=69 Identities=23% Similarity=0.427 Sum_probs=64.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEE---cCEEcCCCCCccccccccccceEEE
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV 70 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~---~g~~L~d~~~L~~~~i~~~~~i~l~ 70 (134)
|+|.|+. +|+.+.+++++++||++||++|++.+|+|+++|+|+| .|+.+.|+.+|++|++++|+.|+++
T Consensus 1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 6788987 6799999999999999999999999999999999996 8999999999999999999999875
No 24
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=5.3e-17 Score=89.64 Aligned_cols=69 Identities=54% Similarity=0.908 Sum_probs=67.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEE
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l 69 (134)
|.|.|+++.|+.+.++++|+++|..+|+.++.+.|+||.+|||+|.|+.+.|+.+..+|++.-|+++|+
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHl 69 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHL 69 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEee
Confidence 789999999999999999999999999999999999999999999999999999999999999999987
No 25
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.66 E-value=5.2e-16 Score=89.16 Aligned_cols=64 Identities=61% Similarity=0.864 Sum_probs=61.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCcccccccccc
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 65 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~ 65 (134)
|+|+|+..+ ..+.+++++++||++||++|+..+|+|+++|+|.|+|+.|.|+.+|++||+.+|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 789999998 7889999999999999999999999999999999999999999999999998874
No 26
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=2.1e-16 Score=103.65 Aligned_cols=77 Identities=95% Similarity=1.314 Sum_probs=74.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecce
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 77 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 77 (134)
|+|+|+.+.++...+++.+++||..+|.+|+...|||+++|+|+|.|+.|+|..+|+||+|..-+++++.++..||.
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~ 77 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA 77 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999998774
No 27
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=4.1e-17 Score=100.39 Aligned_cols=76 Identities=99% Similarity=1.337 Sum_probs=73.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecc
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (134)
|+++++...|++..+++.|++||..+|..|....|+|++.|+|.|+|+.|+|..++++|++..-++++++.++.||
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999998887
No 28
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.62 E-value=1.6e-15 Score=95.24 Aligned_cols=75 Identities=24% Similarity=0.318 Sum_probs=69.1
Q ss_pred CccccccccccceEEEEEeecceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 55 TLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 55 ~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
.-..+.+.+-+++++.+++.+.+.++|++..|++++++|++++||++||++|++.+|+|+++|+|+|+|+.|.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~ 80 (103)
T cd01802 6 EPPFFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDE 80 (103)
T ss_pred CCCccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCC
Confidence 344567778889999999999999999999999999999999999999999999999999999999999999764
No 29
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.62 E-value=2e-15 Score=113.80 Aligned_cols=73 Identities=30% Similarity=0.601 Sum_probs=70.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhC---CCCCceEEEEcCEEcCCCCCccccccccccceEEEEEe
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (134)
|+|+||+.+|+.+.++|++++||.+||++|+...| +++++|+|+|+|+.|+|+.+|++|+|+++++|+++++.
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k 76 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK 76 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence 89999999999999999999999999999999998 99999999999999999999999999999999988875
No 30
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.60 E-value=3e-15 Score=88.90 Aligned_cols=65 Identities=29% Similarity=0.364 Sum_probs=58.5
Q ss_pred EeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcC-CCCCccccccc-cccceEEEE
Q 032747 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL 71 (134)
Q Consensus 6 ~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~-d~~~L~~~~i~-~~~~i~l~~ 71 (134)
+...|.++.+++++++||++||++|++.+|+|++.|+| |+|+.|. |+.+|++||+. +|+++++.+
T Consensus 8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred cccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 34467889999999999999999999999999999999 9998885 77999999998 889998864
No 31
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.52 E-value=5.4e-14 Score=81.79 Aligned_cols=67 Identities=67% Similarity=0.992 Sum_probs=63.0
Q ss_pred EEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEE
Q 032747 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 5 v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (134)
|+..+|+.+.+.+++++||.+||++|+..+|+|+++|+|.|+|+.|+|+.+|++|++.+++.|++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 6777899999999999999999999999999999999999999999999999999999999998754
No 32
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.51 E-value=1e-13 Score=81.65 Aligned_cols=71 Identities=34% Similarity=0.633 Sum_probs=65.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCC-CceEEEEcCEEcCCCCCccccccccccceEEEE
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~-~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (134)
|+|+|+..+|+.+.+.|.+++++..|++.+++..|+|+ +..+|.|+|+.|+++.|++++|+.+|++|++.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 68999999999999999999999999999999999999 999999999999999999999999999999853
No 33
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.50 E-value=2.3e-14 Score=84.34 Aligned_cols=53 Identities=32% Similarity=0.547 Sum_probs=48.4
Q ss_pred CCCcHHHHHHHHHhhh--CCC-CCceEEEEcCEEcCCCCCccccccccccceEEEE
Q 032747 19 SSDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 19 ~~~tv~~lK~~i~~~~--gi~-~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (134)
.++||.+||++|++.. |++ +++|+|+|.|+.|+|+.+|++|+|.+|++||++.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 4689999999999996 465 8899999999999999999999999999999864
No 34
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.50 E-value=6.5e-14 Score=85.56 Aligned_cols=62 Identities=27% Similarity=0.314 Sum_probs=57.1
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcC-CCCCccccccccccceEEEEEe
Q 032747 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLRL 73 (134)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~-d~~~L~~~~i~~~~~i~l~~~~ 73 (134)
...+.|++++||.+||..|.+.++++|.+|+|.++|+.|. |.++|++||+.++++|.+.++.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide 78 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE 78 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence 4578899999999999999999999999999999999985 5689999999999999998764
No 35
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.48 E-value=4.9e-14 Score=107.30 Aligned_cols=73 Identities=37% Similarity=0.592 Sum_probs=69.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEee
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (134)
++|+||+.++ ++.+.|..+.||.+||+.|.+.+++++++++|+|.|+.|+|+.+|..|||.+|.||||+.+..
T Consensus 16 irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 16 IRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred eEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 4789999887 889999999999999999999999999999999999999999999999999999999998854
No 36
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.47 E-value=8e-14 Score=87.39 Aligned_cols=73 Identities=23% Similarity=0.317 Sum_probs=62.5
Q ss_pred EEEEEeCCCCEE-EEEEcCCCcHHHHHHHHHhhh-----CC--CCCceEEEEcCEEcCCCCCccccc------cccccce
Q 032747 2 QIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKE-----GI--PPDQQRLIFAGKQLEDGRTLADYN------IQKESTL 67 (134)
Q Consensus 2 ~i~v~~~~g~~~-~~~v~~~~tv~~lK~~i~~~~-----gi--~~~~q~L~~~g~~L~d~~~L~~~~------i~~~~~i 67 (134)
.|.+|..+|..+ ++.+++++||.+||++|++.. ++ ++++|+|+|+|+.|+|+.+|++|+ +....|+
T Consensus 6 e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~Tm 85 (113)
T cd01814 6 EIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITM 85 (113)
T ss_pred EEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEE
Confidence 577888888665 688889999999999999665 34 489999999999999999999999 5666889
Q ss_pred EEEEEee
Q 032747 68 HLVLRLR 74 (134)
Q Consensus 68 ~l~~~~~ 74 (134)
|++++++
T Consensus 86 Hvvlr~~ 92 (113)
T cd01814 86 HVVVQPP 92 (113)
T ss_pred EEEecCC
Confidence 9988864
No 37
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.42 E-value=2.6e-13 Score=80.40 Aligned_cols=53 Identities=25% Similarity=0.371 Sum_probs=49.9
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
+.++|++.+|++++++|++++||++||++|++.+|+|+++|+|+|+|+.|.++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~ 53 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADD 53 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCC
Confidence 46889999999999999999999999999999999999999999999999754
No 38
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.5e-13 Score=76.05 Aligned_cols=52 Identities=71% Similarity=0.901 Sum_probs=48.7
Q ss_pred eeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 78 ~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
.+.|++++|+.+.++++|+++|+.+|+++++++||||.+|||+|.|+.+-++
T Consensus 2 ~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD 53 (70)
T KOG0005|consen 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDD 53 (70)
T ss_pred eeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhcccccccc
Confidence 5789999999999999999999999999999999999999999999988543
No 39
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.42 E-value=2.1e-13 Score=79.98 Aligned_cols=51 Identities=27% Similarity=0.516 Sum_probs=48.0
Q ss_pred eeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEEe
Q 032747 80 KVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYFS 130 (134)
Q Consensus 80 ~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~~ 130 (134)
.|++.+|++++++|++++||++||++|++.+|+|+++|+|+|+|++|.++.
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~ 52 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKT 52 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCC
Confidence 578889999999999999999999999999999999999999999998754
No 40
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.41 E-value=6.5e-13 Score=96.77 Aligned_cols=74 Identities=38% Similarity=0.657 Sum_probs=70.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhC--CCCCceEEEEcCEEcCCCCCccccccccccceEEEEEee
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g--i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (134)
|.|+||++.++.|++++.|++||.++|.+|+...| +|++.|+|+|+|+.|.|+.++++|++.++.-|.++++..
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999888888755
No 41
>PTZ00044 ubiquitin; Provisional
Probab=99.39 E-value=6.2e-13 Score=79.10 Aligned_cols=53 Identities=34% Similarity=0.414 Sum_probs=49.9
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
+.++|++.+|++++++|++++||++||++|++.+|+|+++|+|+|+|+.|.++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~ 53 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDD 53 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCC
Confidence 46899999999999999999999999999999999999999999999998653
No 42
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.35 E-value=1.2e-12 Score=77.53 Aligned_cols=51 Identities=18% Similarity=0.207 Sum_probs=48.4
Q ss_pred eeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 79 i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
|+|++..|++++++|++++||++||++|++..|+|+++|+|+|+|+.|.++
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~ 51 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDE 51 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCC
Confidence 578999999999999999999999999999999999999999999998754
No 43
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.33 E-value=1.7e-12 Score=76.96 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=46.1
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
++++|++. ++++++|++++||++||++|++.+|+|+++|+|+|+|+.|.+.
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~ 51 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDD 51 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCC
Confidence 45778874 6899999999999999999999999999999999999998754
No 44
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.33 E-value=2.5e-12 Score=75.63 Aligned_cols=51 Identities=27% Similarity=0.352 Sum_probs=47.7
Q ss_pred eeeeec-CCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 79 IKVKTL-TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 79 i~v~~~-~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
+.|++. +|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|.++
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~ 52 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDN 52 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCC
Confidence 467888 899999999999999999999999999999999999999999765
No 45
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.32 E-value=2e-12 Score=77.38 Aligned_cols=53 Identities=25% Similarity=0.335 Sum_probs=48.3
Q ss_pred eeeeeeecCCcE-EEEE-eccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 77 TMIKVKTLTGKE-IEID-IEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 77 ~~i~v~~~~~~~-~~~~-V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
|.|+|++.+|+. ++++ +.+++||++||++|++.+|+|+++|+|+|+|+.|.++
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~ 55 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDG 55 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCC
Confidence 468999999986 6895 8999999999999999999999999999999998654
No 46
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.32 E-value=2.2e-12 Score=76.21 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=49.4
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
+.+.|++..|+.+.++|++++||++||.+|++..|+|+++|+|+|.|++|.++
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~ 54 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDH 54 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCC
Confidence 46788999999999999999999999999999999999999999999988765
No 47
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.31 E-value=2.7e-12 Score=75.21 Aligned_cols=51 Identities=29% Similarity=0.496 Sum_probs=48.0
Q ss_pred eeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 79 i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
++|++..|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|.++
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~ 51 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNT 51 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCC
Confidence 578999999999999999999999999999999999999999999998654
No 48
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.31 E-value=1.7e-11 Score=74.35 Aligned_cols=71 Identities=21% Similarity=0.365 Sum_probs=58.4
Q ss_pred EEEEEeCC-CCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEE-EcCE-----Ec-CCCCCccccccccccceEEEEE
Q 032747 2 QIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 2 ~i~v~~~~-g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~g~-----~L-~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
.|.|+... .......+++++||.+||++++..+|+|++.|+|. +.|+ .| +|..+|++|++.+|++||+.-.
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~ 81 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDV 81 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeC
Confidence 46666643 23455669999999999999999999999999995 7776 46 6778999999999999998654
No 49
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.27 E-value=1.2e-11 Score=73.62 Aligned_cols=53 Identities=36% Similarity=0.548 Sum_probs=49.8
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCC--CCCcceEEeCCeEEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGI--PPVQQRYPIQSFILFYF 129 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gi--p~~~q~L~~~g~~l~~~ 129 (134)
+.++|++.+|+.+.++|++++||++||++|++.+|+ |+++|+|+|+|+.|.++
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~ 55 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDD 55 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCC
Confidence 468899999999999999999999999999999999 99999999999999754
No 50
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=99.25 E-value=4.4e-11 Score=72.99 Aligned_cols=71 Identities=27% Similarity=0.535 Sum_probs=57.5
Q ss_pred EEEEEeCCC--CEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEc----C---EEc-CCCCCccccccccccceEEEE
Q 032747 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G---KQL-EDGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 2 ~i~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~----g---~~L-~d~~~L~~~~i~~~~~i~l~~ 71 (134)
.|.|.+... ......++++.||++||.+++..+|+|++.|+|.+. + ..+ +|..+|++||+.+|++|++.-
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D 82 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVD 82 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEe
Confidence 567777654 478899999999999999999999999999999976 1 234 567899999999999999865
Q ss_pred E
Q 032747 72 R 72 (134)
Q Consensus 72 ~ 72 (134)
.
T Consensus 83 ~ 83 (87)
T PF14560_consen 83 T 83 (87)
T ss_dssp -
T ss_pred C
Confidence 4
No 51
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=2.8e-12 Score=79.14 Aligned_cols=51 Identities=49% Similarity=0.728 Sum_probs=48.3
Q ss_pred eeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 78 ~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
.+++++.+|++++++|++++||.+||.+|+..+|||+++|+|+|.|+.|-+
T Consensus 2 ~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED 52 (128)
T KOG0003|consen 2 QIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 52 (128)
T ss_pred cEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhccccccc
Confidence 478899999999999999999999999999999999999999999998854
No 52
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.23 E-value=2.9e-11 Score=71.67 Aligned_cols=53 Identities=70% Similarity=0.883 Sum_probs=49.2
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
+.+.|++.+|+++.++|.++.||++||++|++..|+|+..|+|+|+|+.|...
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~ 53 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDD 53 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCC
Confidence 46789999999999999999999999999999999999999999999998643
No 53
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.23 E-value=1.8e-11 Score=71.90 Aligned_cols=53 Identities=34% Similarity=0.357 Sum_probs=49.6
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
+.++|++.+|+++++++++++||++||++|++.+|+|++.|+|+|+|++|.++
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~ 53 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDD 53 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCc
Confidence 46789999999999999999999999999999999999999999999998754
No 54
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.23 E-value=1.7e-11 Score=72.64 Aligned_cols=53 Identities=49% Similarity=0.670 Sum_probs=49.5
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
+.++|++.+|+.+.++|++++||++||++|++.+|+|+++|+|+|+|+.|.+.
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~ 53 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCC
Confidence 46889999999999999999999999999999999999999999999998754
No 55
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.22 E-value=2.4e-11 Score=72.42 Aligned_cols=53 Identities=13% Similarity=-0.005 Sum_probs=45.1
Q ss_pred eeeeeeecCCcE--EEEEeccCCcHHHHHHHhhhhcC--CCCCcceEEeCCeEEEEE
Q 032747 77 TMIKVKTLTGKE--IEIDIEPTDTIERIKERVEEKEG--IPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 77 ~~i~v~~~~~~~--~~~~V~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~g~~l~~~ 129 (134)
+.+.|++++++. ++++++++.||.+||++|++..+ .|+++|+|+|.|++|.++
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~ 58 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDH 58 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccch
Confidence 567899999887 55556899999999999998875 558999999999999764
No 56
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.22 E-value=1.8e-11 Score=73.26 Aligned_cols=53 Identities=17% Similarity=0.330 Sum_probs=49.6
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
+.++|++..|+.++++|+++.||++||++|+++.|+|+++|+|+|.|+.|.+.
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~ 54 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG 54 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC
Confidence 57889999999999999999999999999999999999999999999998754
No 57
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.19 E-value=1.9e-11 Score=73.50 Aligned_cols=53 Identities=28% Similarity=0.361 Sum_probs=49.6
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceE--EeCCeEEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRY--PIQSFILFYF 129 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L--~~~g~~l~~~ 129 (134)
+.++|++..|+.+.++|+++.||++||.+|++..|+|+++|+| +|+|+.|.++
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~ 57 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDG 57 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCC
Confidence 6789999999999999999999999999999999999999999 8999988754
No 58
>PLN02560 enoyl-CoA reductase
Probab=99.18 E-value=8.2e-11 Score=86.92 Aligned_cols=69 Identities=32% Similarity=0.560 Sum_probs=61.5
Q ss_pred CEEEEEeCCCCEE---EEEEcCCCcHHHHHHHHHhhhCC-CCCceEEEEc---C----EEcCCCCCccccccccccceEE
Q 032747 1 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL 69 (134)
Q Consensus 1 m~i~v~~~~g~~~---~~~v~~~~tv~~lK~~i~~~~gi-~~~~q~L~~~---g----~~L~d~~~L~~~~i~~~~~i~l 69 (134)
|+|.|+..+|+.. .+++++++||++||++|++..+. ++++|+|.+. | ..|+|+.+|+++|+++|+++++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 8899999888887 69999999999999999999886 8999999973 3 3788999999999999998765
No 59
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.18 E-value=7.9e-11 Score=68.63 Aligned_cols=46 Identities=39% Similarity=0.683 Sum_probs=43.8
Q ss_pred eecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEE
Q 032747 82 KTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILF 127 (134)
Q Consensus 82 ~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~ 127 (134)
++.+|+.++++|++++||++||.+|++..|+|++.|+|+|+|++|.
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~ 46 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELD 46 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEES
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeeccc
Confidence 5678999999999999999999999999999999999999999993
No 60
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=99.15 E-value=1.9e-10 Score=72.08 Aligned_cols=73 Identities=32% Similarity=0.458 Sum_probs=61.1
Q ss_pred CEEEEEeCCCCE-EEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCcccccc-------ccccceEEEEE
Q 032747 1 MQIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLR 72 (134)
Q Consensus 1 m~i~v~~~~g~~-~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i-------~~~~~i~l~~~ 72 (134)
|.++++....++ +.++..+++||.+||++|+.....||++|+|+-.+..|+|.++|++||+ .+.+++-|.++
T Consensus 1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence 556666554444 6689999999999999999999999999999977788999999999999 55777777776
Q ss_pred e
Q 032747 73 L 73 (134)
Q Consensus 73 ~ 73 (134)
.
T Consensus 81 ~ 81 (119)
T cd01788 81 S 81 (119)
T ss_pred c
Confidence 4
No 61
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.12 E-value=1.2e-10 Score=68.18 Aligned_cols=51 Identities=18% Similarity=0.218 Sum_probs=46.7
Q ss_pred eeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 78 ~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
.+.|++. |+.++++++++.||++||++|++.+|+|++.|+|+|+|+.|.+.
T Consensus 2 ~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~ 52 (71)
T cd01812 2 RVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDA 52 (71)
T ss_pred EEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCcc
Confidence 5678887 88999999999999999999999999999999999999988643
No 62
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=2.9e-11 Score=79.57 Aligned_cols=52 Identities=46% Similarity=0.657 Sum_probs=49.5
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
+.|+|+++++++++++|.+++||..+|.+|++.+|||+++|+|+|.|+.|-+
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLed 52 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 52 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhccccc
Confidence 4689999999999999999999999999999999999999999999999876
No 63
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.10 E-value=1.3e-09 Score=63.29 Aligned_cols=72 Identities=83% Similarity=1.130 Sum_probs=66.8
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEee
Q 032747 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (134)
Q Consensus 3 i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (134)
+++....|+.+.+.+.+..++..+|.+|+...|++++.|++.+.|+.|.|..++.+|+|..++++++..+..
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 466778899999999999999999999999999999999999999999999999999999999999887753
No 64
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.10 E-value=1.4e-10 Score=68.10 Aligned_cols=51 Identities=27% Similarity=0.190 Sum_probs=46.7
Q ss_pred eeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 78 ~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
.++|++..|+ .+++++++.||++||++|++.+|+|+++|+|+|+|+.|.++
T Consensus 2 ~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~ 52 (71)
T cd01808 2 KVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDT 52 (71)
T ss_pred EEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCC
Confidence 4778888886 58999999999999999999999999999999999999765
No 65
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=99.05 E-value=1.9e-09 Score=68.47 Aligned_cols=72 Identities=31% Similarity=0.505 Sum_probs=54.4
Q ss_pred EEEEEeCCCC-EEEEEEcCCCcHHHHHHHHHhhhC-------CCCCceEEEEcCEEcCCCCCcccccccccc------ce
Q 032747 2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------TL 67 (134)
Q Consensus 2 ~i~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~g-------i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~------~i 67 (134)
.|.++..+|. .-++.+++++||.+||+.|...+. ..++..||+|.|+.|+|+.+|+++.+..|. ++
T Consensus 4 ~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vm 83 (111)
T PF13881_consen 4 ELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVM 83 (111)
T ss_dssp EEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEE
T ss_pred EEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEE
Confidence 5677788999 778999999999999999998652 124689999999999999999999886655 56
Q ss_pred EEEEEe
Q 032747 68 HLVLRL 73 (134)
Q Consensus 68 ~l~~~~ 73 (134)
|+++++
T Consensus 84 Hlvvrp 89 (111)
T PF13881_consen 84 HLVVRP 89 (111)
T ss_dssp EEEE-S
T ss_pred EEEecC
Confidence 666664
No 66
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=4e-10 Score=92.26 Aligned_cols=73 Identities=34% Similarity=0.592 Sum_probs=69.4
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeec
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 75 (134)
.|.||+++.++.++.+...+||.+||++|.++.+|+.+.|||+|.|+.|.|++++++|++ +|-+|||.-|++.
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp 76 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPP 76 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCC
Confidence 478999999999999999999999999999999999999999999999999999999999 8999999988653
No 67
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.04 E-value=2.7e-10 Score=67.81 Aligned_cols=46 Identities=17% Similarity=0.420 Sum_probs=42.7
Q ss_pred cCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 84 LTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 84 ~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
++|++++++|++++||++||.+|+..+|+|+++|+|+|.|+.|.+.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~ 50 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDS 50 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCC
Confidence 4688999999999999999999999999999999999999987653
No 68
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.01 E-value=9.3e-10 Score=62.79 Aligned_cols=52 Identities=35% Similarity=0.504 Sum_probs=47.0
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
+.++|++.+ +.+.++|+++.||++||.+|+..+|+|+..|+|+|+|+.|...
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~ 52 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDD 52 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCC
Confidence 357888888 6899999999999999999999999999999999999988653
No 69
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.99 E-value=1.6e-09 Score=64.58 Aligned_cols=68 Identities=29% Similarity=0.388 Sum_probs=52.9
Q ss_pred EEEEEeCCCCEE-EEEE-cCCCcHHHHHHHHHhhhC-CCCCceEEE--EcCEEcCCCCCccccccccccceEE
Q 032747 2 QIFVKTLTGKTI-TLEV-ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 69 (134)
Q Consensus 2 ~i~v~~~~g~~~-~~~v-~~~~tv~~lK~~i~~~~g-i~~~~q~L~--~~g~~L~d~~~L~~~~i~~~~~i~l 69 (134)
.|.++..+.+.+ .+++ +++.||.+||+.|++..+ +++++|+|. +.|+.|.|+.+|+++|+.+|+++++
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 455555441332 2444 488999999999999876 578999997 6789999999999999999998876
No 70
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=98.96 E-value=5.8e-10 Score=66.00 Aligned_cols=44 Identities=18% Similarity=0.192 Sum_probs=40.4
Q ss_pred CCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEe---CCeEEEE
Q 032747 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPI---QSFILFY 128 (134)
Q Consensus 85 ~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~---~g~~l~~ 128 (134)
.|+.+.++|++++||++||++|++.+|+|+++|.|+| .|+++.+
T Consensus 8 ~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D 54 (74)
T cd01813 8 GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAED 54 (74)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCC
Confidence 5778999999999999999999999999999999996 8887754
No 71
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=98.93 E-value=1.6e-09 Score=64.21 Aligned_cols=43 Identities=26% Similarity=0.385 Sum_probs=39.6
Q ss_pred cCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEE
Q 032747 84 LTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILF 127 (134)
Q Consensus 84 ~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~ 127 (134)
..|.+++++|.++.||++||.+|++++|+|+++|+| |.|+.|.
T Consensus 10 ~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~ 52 (75)
T cd01799 10 SHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLA 52 (75)
T ss_pred cCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeC
Confidence 347789999999999999999999999999999999 9998874
No 72
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=98.92 E-value=3.1e-09 Score=64.82 Aligned_cols=52 Identities=17% Similarity=0.279 Sum_probs=49.1
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
+.|+|++.+|+.+.++|.+++|+..|+.+++++.|+|+++|+|+|+|+.|..
T Consensus 12 i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~ 63 (87)
T cd01763 12 INLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRD 63 (87)
T ss_pred EEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCC
Confidence 5678889999999999999999999999999999999999999999999875
No 73
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.91 E-value=1.3e-08 Score=59.11 Aligned_cols=71 Identities=28% Similarity=0.401 Sum_probs=61.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEc---C--EEcCCCCCccccccccccceEEEEE
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~---g--~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
++|+|+..++..+.+.|+|..+|..+|++|....|++- .|+|.|. | ..|.+..+|++|||-.+..|.+.-+
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT 76 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLET 76 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEec
Confidence 57999999999999999999999999999999999887 9999986 3 4578999999999987776666544
No 74
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.89 E-value=3.7e-09 Score=63.41 Aligned_cols=69 Identities=29% Similarity=0.434 Sum_probs=43.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEc---CEEc--CCCCCccccccccccceEEE
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQL--EDGRTLADYNIQKESTLHLV 70 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~---g~~L--~d~~~L~~~~i~~~~~i~l~ 70 (134)
|-|.|++.+| .+.+++++++|+.+|+++|.+.+++|...|.|..+ ...+ .+..+|+++|+++|+.|++.
T Consensus 5 milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 5 MILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp -EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred EEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 5688888875 55789999999999999999999999999988654 2345 46789999999999999873
No 75
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.87 E-value=2.8e-09 Score=80.75 Aligned_cols=53 Identities=32% Similarity=0.513 Sum_probs=50.0
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcC---CCCCcceEEeCCeEEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEG---IPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~g---ip~~~q~L~~~g~~l~~~ 129 (134)
|.|+|++..|+++.++|++++||.+||++|+...| +|+++|+|+|+|++|.+.
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd 56 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDD 56 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCC
Confidence 46899999999999999999999999999999998 999999999999999765
No 76
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.77 E-value=9.4e-09 Score=63.07 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=41.8
Q ss_pred EEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEEecc
Q 032747 88 EIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYFSNK 132 (134)
Q Consensus 88 ~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~~~~ 132 (134)
..+++|++++||.+||.+|++.+|+||.+|+|++.|+.|.+++..
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrT 60 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCAT 60 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCcc
Confidence 567889999999999999999999999999999999999988764
No 77
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.75 E-value=6.8e-08 Score=53.68 Aligned_cols=67 Identities=46% Similarity=0.666 Sum_probs=59.6
Q ss_pred EEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEE
Q 032747 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 5 v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (134)
|+..++....+.+.+++|+.++|+.+..++|.++..+.|.++|..+.+...+.++++.+++++++..
T Consensus 2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 2 VKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred eEecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 3444678888999999999999999999999999999999999999988888899999999988753
No 78
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=2.9e-07 Score=56.52 Aligned_cols=76 Identities=17% Similarity=0.427 Sum_probs=69.2
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecce
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 77 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 77 (134)
.+.|+..++....+.|..+++...|+...+++.|++.+..+++|+|+++.+..|-++++.++++.|.+.....+|.
T Consensus 22 ~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~ 97 (99)
T KOG1769|consen 22 NLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF 97 (99)
T ss_pred EEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence 4667776778888999999999999999999999999999999999999999999999999999999988776654
No 79
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.1e-08 Score=57.64 Aligned_cols=69 Identities=26% Similarity=0.398 Sum_probs=61.3
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEE
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 70 (134)
++.+...-|+...+...+++||+++|..|++.+|..++...|--.+..++|+-+|++|.+.+|..+.+.
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 455666778999999999999999999999999999988888766778899999999999999988775
No 80
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.64 E-value=3.5e-08 Score=72.37 Aligned_cols=53 Identities=30% Similarity=0.466 Sum_probs=50.0
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcC--CCCCcceEEeCCeEEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEG--IPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~g~~l~~~ 129 (134)
+.+++|++.+++|+++|.+++||.++|.+|+...| .|..+|.|+|.|++|.+.
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~ 55 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDE 55 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCC
Confidence 46789999999999999999999999999999999 999999999999999764
No 81
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=98.55 E-value=1.4e-07 Score=54.31 Aligned_cols=48 Identities=46% Similarity=0.724 Sum_probs=43.5
Q ss_pred eeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 81 VKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 81 v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
|+..+|+.+.+.+.++.|+++||.+|++.+|+|++.|+|+|+|+.|..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d 49 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKD 49 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCC
Confidence 455678899999999999999999999999999999999999998854
No 82
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.49 E-value=1.1e-07 Score=59.90 Aligned_cols=50 Identities=20% Similarity=0.108 Sum_probs=37.4
Q ss_pred eeeecCCcE-EEEEeccCCcHHHHHHHhhhhc-----CCC--CCcceEEeCCeEEEEE
Q 032747 80 KVKTLTGKE-IEIDIEPTDTIERIKERVEEKE-----GIP--PVQQRYPIQSFILFYF 129 (134)
Q Consensus 80 ~v~~~~~~~-~~~~V~~~~tV~~lK~~i~~~~-----gip--~~~q~L~~~g~~l~~~ 129 (134)
..+..+|.. -...+.+++||++||++|++.+ |+| +++|+|+|.|++|.+.
T Consensus 8 kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~ 65 (113)
T cd01814 8 KFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENS 65 (113)
T ss_pred EEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCC
Confidence 334444432 2356789999999999999555 456 9999999999999754
No 83
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=98.47 E-value=7.5e-08 Score=56.75 Aligned_cols=35 Identities=11% Similarity=-0.008 Sum_probs=30.8
Q ss_pred cCCcHHHHHHHhhhhc--CCC-CCcceEEeCCeEEEEE
Q 032747 95 PTDTIERIKERVEEKE--GIP-PVQQRYPIQSFILFYF 129 (134)
Q Consensus 95 ~~~tV~~lK~~i~~~~--gip-~~~q~L~~~g~~l~~~ 129 (134)
.++||++||.+|+++. |+| +++|+|+|.|+.|.++
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~ 56 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDD 56 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCC
Confidence 4889999999999994 575 9999999999998754
No 84
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.44 E-value=1.3e-06 Score=51.13 Aligned_cols=52 Identities=37% Similarity=0.534 Sum_probs=47.8
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCC-CcceEEeCCeEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPP-VQQRYPIQSFILFY 128 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~-~~q~L~~~g~~l~~ 128 (134)
+.+.++..+|+.+.+.|.+++++..|...++++.|+|+ ...+|+|.|+.|..
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~ 53 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDP 53 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-T
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCC
Confidence 35788899999999999999999999999999999999 99999999999864
No 85
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=8e-07 Score=68.08 Aligned_cols=71 Identities=24% Similarity=0.414 Sum_probs=64.6
Q ss_pred EEEEeCCCCEEEEE-EcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEee
Q 032747 3 IFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (134)
Q Consensus 3 i~v~~~~g~~~~~~-v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (134)
|.|+. .|+.+.++ ++.++|...||.+++..+|++|++|++.+.|..+.|+-.++..+|++|.+++++-+..
T Consensus 6 v~VKW-~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e 77 (473)
T KOG1872|consen 6 VIVKW-GGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAE 77 (473)
T ss_pred Eeeee-cCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeecccc
Confidence 56665 67889887 9999999999999999999999999999999999999999999999999999987653
No 86
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.3e-06 Score=64.07 Aligned_cols=73 Identities=32% Similarity=0.604 Sum_probs=61.0
Q ss_pred CEEEEEeC---CCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEE-EEe
Q 032747 1 MQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV-LRL 73 (134)
Q Consensus 1 m~i~v~~~---~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~-~~~ 73 (134)
|.+.|... ....++++|+.+++|.+||+-++...|+|+++.+++|.|+.|+++.++..+.+.--+.+|++ +|+
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence 55666554 12447899999999999999999999999999999999999999999998887777777765 444
No 87
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=98.17 E-value=3.4e-06 Score=51.39 Aligned_cols=62 Identities=29% Similarity=0.439 Sum_probs=50.2
Q ss_pred CEEEEEeCCC-CEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcC--EEcCCCCCccccccc
Q 032747 1 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLEDGRTLADYNIQ 62 (134)
Q Consensus 1 m~i~v~~~~g-~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g--~~L~d~~~L~~~~i~ 62 (134)
|.++++.... .++.++..++.||.+||.+++....-|++.|+|+.-. +.|+|.++|+++|..
T Consensus 1 ~~~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 1 MDVFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred CceeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence 3455554443 4467889999999999999999999999999998643 568999999999864
No 88
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.11 E-value=8.4e-06 Score=46.88 Aligned_cols=51 Identities=45% Similarity=0.574 Sum_probs=46.6
Q ss_pred eeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 79 i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
+++.+..|+++.+.+.++++++.+|.+|+...|+|+.+|++.+.|+.|.+.
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~ 52 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDG 52 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCC
Confidence 466778899999999999999999999999999999999999999988754
No 89
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=98.06 E-value=1.5e-05 Score=47.62 Aligned_cols=68 Identities=24% Similarity=0.405 Sum_probs=49.0
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCC------ceEEE-EcCEEcCCCCCccccccccccceEE
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI-FAGKQLEDGRTLADYNIQKESTLHL 69 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~------~q~L~-~~g~~L~d~~~L~~~~i~~~~~i~l 69 (134)
+|+|...+|+.+.+.++.+.++.+|...+.+..+.+.. ...|. -+|.+|+++.+|+++|+.+|+.+.+
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 56777655688999999999999999999998876432 24555 5689999999999999999999876
No 90
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.06 E-value=4.4e-06 Score=64.49 Aligned_cols=51 Identities=24% Similarity=0.318 Sum_probs=46.9
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
+.|.|++.++ .+.+.|....||.+||+.|....++|+++++|+|.|++|.+
T Consensus 16 irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD 66 (493)
T KOG0010|consen 16 IRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKD 66 (493)
T ss_pred eEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccC
Confidence 4577888887 88899999999999999999999999999999999999975
No 91
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=98.03 E-value=3.3e-05 Score=44.36 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=46.4
Q ss_pred eCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEE
Q 032747 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (134)
Q Consensus 7 ~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l 69 (134)
..+++.+.+.+.|++++.++-++..+++|+.++.-.|.|++++|+-..+..-.|+.+|+.+.+
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 457899999999999999999999999999999999999999999899999999999998864
No 92
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.97 E-value=0.00012 Score=43.74 Aligned_cols=68 Identities=24% Similarity=0.361 Sum_probs=56.8
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCc-eEEE--EcCEEcCCC--CCccccccccccceEE
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHL 69 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~-q~L~--~~g~~L~d~--~~L~~~~i~~~~~i~l 69 (134)
+|.||.++|..+.-.+.+++|+.+|.+-|......+... ..|. |-.+.+.+. .+|++.|+.++++|++
T Consensus 8 ~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 8 RIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp EEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred EEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 688999999999999999999999999999987766654 6776 345777544 6999999999998876
No 93
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=97.97 E-value=3.9e-05 Score=46.58 Aligned_cols=44 Identities=20% Similarity=0.462 Sum_probs=36.2
Q ss_pred eeeeecC--CcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeC
Q 032747 79 IKVKTLT--GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQ 122 (134)
Q Consensus 79 i~v~~~~--~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~ 122 (134)
+.|.... ++..+.++.++.||++||.+|+..+|+|+..|+|.+.
T Consensus 4 l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~ 49 (87)
T PF14560_consen 4 LFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLK 49 (87)
T ss_dssp EEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE
T ss_pred EEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEE
Confidence 3444433 3588999999999999999999999999999999875
No 94
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=2.5e-05 Score=47.13 Aligned_cols=71 Identities=15% Similarity=0.355 Sum_probs=63.0
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEE
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
.+.|...+|.++.+.+..+++...|-+..++..|-.-+..|++|+|+.++-+++-++++..+++.|..+..
T Consensus 26 nLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~e 96 (103)
T COG5227 26 NLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTE 96 (103)
T ss_pred ceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHH
Confidence 35666678899999999999999999999999999999999999999999999999999999988765443
No 95
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=97.86 E-value=0.00013 Score=49.04 Aligned_cols=80 Identities=29% Similarity=0.445 Sum_probs=60.1
Q ss_pred CEEEEEeCCC----CEEEEEEcCCCcHHHHHHHHHhhhCCCCCce-EEEEc-CEEc--CCCCCccccccccc----cceE
Q 032747 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFA-GKQL--EDGRTLADYNIQKE----STLH 68 (134)
Q Consensus 1 m~i~v~~~~g----~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q-~L~~~-g~~L--~d~~~L~~~~i~~~----~~i~ 68 (134)
|.|+|++.+| .++.+.+++++||.+|+..|....++++..+ .|.+. +..+ .++..++++.-.+. .++.
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 6899999999 5788999999999999999999999998774 45543 4454 45556666654332 3677
Q ss_pred EEEEeecceeee
Q 032747 69 LVLRLRGGTMIK 80 (134)
Q Consensus 69 l~~~~~~~~~i~ 80 (134)
+..++.||+.-|
T Consensus 81 l~~rl~GGKGGF 92 (162)
T PF13019_consen 81 LSLRLRGGKGGF 92 (162)
T ss_pred EEEeccCCCccH
Confidence 888888887554
No 96
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=97.81 E-value=8.5e-05 Score=44.88 Aligned_cols=39 Identities=21% Similarity=0.207 Sum_probs=34.5
Q ss_pred CcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEE-eCCe
Q 032747 86 GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYP-IQSF 124 (134)
Q Consensus 86 ~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~-~~g~ 124 (134)
....+-++.++.||++||.+++..+|+|+..|+|. |.+.
T Consensus 12 ~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~ 51 (84)
T cd01789 12 SFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGD 51 (84)
T ss_pred ceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCC
Confidence 45666779999999999999999999999999995 7776
No 97
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.77 E-value=0.00024 Score=42.40 Aligned_cols=68 Identities=21% Similarity=0.212 Sum_probs=54.6
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEE--cCEEcCC---CCCccccccccccceEE
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLED---GRTLADYNIQKESTLHL 69 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~--~g~~L~d---~~~L~~~~i~~~~~i~l 69 (134)
+|.||.++|..+...+.+++|+.++.+.+....+.......|.. -.+.+.+ +.+|.+.|+.+.+++.+
T Consensus 6 ~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 6 RLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 68899999999999999999999999999766665555667763 3566653 46899999988887765
No 98
>PLN02560 enoyl-CoA reductase
Probab=97.73 E-value=6.4e-05 Score=55.89 Aligned_cols=45 Identities=20% Similarity=0.456 Sum_probs=39.1
Q ss_pred eeeeeecCCcEE---EEEeccCCcHHHHHHHhhhhcCC-CCCcceEEeC
Q 032747 78 MIKVKTLTGKEI---EIDIEPTDTIERIKERVEEKEGI-PPVQQRYPIQ 122 (134)
Q Consensus 78 ~i~v~~~~~~~~---~~~V~~~~tV~~lK~~i~~~~gi-p~~~q~L~~~ 122 (134)
.+.|+..+|+.+ +++++++.||++||.+|++..++ ++++|+|.+.
T Consensus 2 ~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~ 50 (308)
T PLN02560 2 KVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLP 50 (308)
T ss_pred EEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEe
Confidence 466777777776 79999999999999999999986 8999999984
No 99
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=97.73 E-value=0.00012 Score=45.49 Aligned_cols=57 Identities=21% Similarity=0.368 Sum_probs=44.7
Q ss_pred EEEEeCCC-CEEEEEEc--CCCcHHHHHHHHHhhhC--CCCCceEEEEcCEEcCCCCCcccc
Q 032747 3 IFVKTLTG-KTITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADY 59 (134)
Q Consensus 3 i~v~~~~g-~~~~~~v~--~~~tv~~lK~~i~~~~g--i~~~~q~L~~~g~~L~d~~~L~~~ 59 (134)
|.|+..++ ..+.++++ ..+|+..||..|.+..+ ....+++|+|+|+.|.|...|+..
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 56666663 44677777 78999999999999983 334688999999999998877664
No 100
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=7.1e-05 Score=62.42 Aligned_cols=52 Identities=27% Similarity=0.262 Sum_probs=48.9
Q ss_pred eeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 78 ~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
.+.|||++.++.++.|...+||.++|..|.+...|+.+.||++|+|++|-++
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~ 55 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDD 55 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccc
Confidence 4789999999999999999999999999999999999999999999999653
No 101
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.61 E-value=0.00074 Score=40.25 Aligned_cols=67 Identities=16% Similarity=0.324 Sum_probs=53.8
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEE--EcCEEcCC---CCCccccccccccceEE
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 69 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~--~~g~~L~d---~~~L~~~~i~~~~~i~l 69 (134)
+|.||.++|+...-.++.++|+.++.+.+....+-+ ....|. |-.+.+.+ +.+|.+.|+.+.+++.+
T Consensus 6 ~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 6 RIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 688999999999999999999999999998775433 345665 34677753 47999999998888865
No 102
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.58 E-value=0.00021 Score=39.02 Aligned_cols=44 Identities=34% Similarity=0.538 Sum_probs=39.8
Q ss_pred CCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 85 ~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
++....+.+.++.|+++|+.++++..|+++..+.|++.|..+..
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~ 49 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPD 49 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCC
Confidence 67788899999999999999999999999999999999987653
No 103
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=97.49 E-value=0.0021 Score=45.39 Aligned_cols=103 Identities=21% Similarity=0.315 Sum_probs=57.4
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhhhCCCCC---ceEEE--EcCE---EcCCCCCccccccccccceEEEEEee--------
Q 032747 11 KTITLEVESSDTIDNVKAKIQDKEGIPPD---QQRLI--FAGK---QLEDGRTLADYNIQKESTLHLVLRLR-------- 74 (134)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~---~q~L~--~~g~---~L~d~~~L~~~~i~~~~~i~l~~~~~-------- 74 (134)
+.+.+-|+.+.||.||.+.+.++.+++.+ ..+|+ ++++ .++.+..+.+. .+...+.+-.-+.
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~ 111 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE 111 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence 34778899999999999999999998764 44544 4554 46777777776 2222333321111
Q ss_pred --cceeeeeee-------cCCcEEEEEeccCCcHHHHHHHhhhhcCCCCC
Q 032747 75 --GGTMIKVKT-------LTGKEIEIDIEPTDTIERIKERVEEKEGIPPV 115 (134)
Q Consensus 75 --~~~~i~v~~-------~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~ 115 (134)
+..-|.|-. ..|-.|.+.|.+.+|.+++|++|+++.|++-.
T Consensus 112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~k 161 (213)
T PF14533_consen 112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDK 161 (213)
T ss_dssp --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HH
T ss_pred cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChh
Confidence 112233321 12778889999999999999999999997654
No 104
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.47 E-value=0.0012 Score=39.42 Aligned_cols=64 Identities=22% Similarity=0.295 Sum_probs=50.7
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCC-CCceEEE--EcCEEcC-CCCCcccccccccc
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLI--FAGKQLE-DGRTLADYNIQKES 65 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~-~~~q~L~--~~g~~L~-d~~~L~~~~i~~~~ 65 (134)
+|.||..+|+.+...++.++||++|.+-|....+-+ .....|. |-.+.|. ++.+|.+.|+.+..
T Consensus 6 ~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~ 73 (79)
T cd01770 6 SIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAV 73 (79)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcE
Confidence 688999999999999999999999999999876432 2455665 4467774 46799999998643
No 105
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=97.44 E-value=0.00025 Score=50.67 Aligned_cols=69 Identities=29% Similarity=0.400 Sum_probs=51.0
Q ss_pred CEEEEEeCCCCE-EE-EEEcCCCcHHHHHHHHHhhh-CCCCCceEEE----EcCEEcCCCCCccccccccccceEE
Q 032747 1 MQIFVKTLTGKT-IT-LEVESSDTIDNVKAKIQDKE-GIPPDQQRLI----FAGKQLEDGRTLADYNIQKESTLHL 69 (134)
Q Consensus 1 m~i~v~~~~g~~-~~-~~v~~~~tv~~lK~~i~~~~-gi~~~~q~L~----~~g~~L~d~~~L~~~~i~~~~~i~l 69 (134)
|.|++.+.++.. .. ...+..+|+.|+++++.+.. .+.+.++++. -.|++|.|+.+|++|+..+|+++.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 788888876533 33 56778899999998777654 5666444443 3489999999999999988877654
No 106
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=97.42 E-value=0.0016 Score=38.45 Aligned_cols=64 Identities=16% Similarity=0.238 Sum_probs=50.0
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEE--cCEEcC---CCCCccccccccccc
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE---DGRTLADYNIQKEST 66 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~--~g~~L~---d~~~L~~~~i~~~~~ 66 (134)
+|.||.++|..+.-.+..++|+.+|.+-|.....- .....|.. -.+.+. .+.+|.+.|+.+.+.
T Consensus 4 ~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~~ 72 (77)
T cd01767 4 KIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEVV 72 (77)
T ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCccceE
Confidence 68899999999999999999999999999877543 44556663 356664 468999999985443
No 107
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.39 E-value=0.00041 Score=41.52 Aligned_cols=44 Identities=25% Similarity=0.541 Sum_probs=29.6
Q ss_pred eeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeC
Q 032747 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQ 122 (134)
Q Consensus 78 ~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~ 122 (134)
-+-|++.+| .+.+++++++|+.+|+++|++..++|...|.|..+
T Consensus 6 ilRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~ 49 (80)
T PF11543_consen 6 ILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKD 49 (80)
T ss_dssp EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSS
T ss_pred EEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEec
Confidence 344566666 67789999999999999999999999999888654
No 108
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=97.36 E-value=0.00048 Score=43.53 Aligned_cols=42 Identities=26% Similarity=0.203 Sum_probs=36.6
Q ss_pred cEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 87 KEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 87 ~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
.++-++..+++||.+||++|+.-...||..|+|+-.+++|.+
T Consensus 12 TTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD 53 (119)
T cd01788 12 TTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDD 53 (119)
T ss_pred eEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecc
Confidence 367788999999999999999999999999999966666654
No 109
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.31 E-value=0.0032 Score=37.79 Aligned_cols=69 Identities=14% Similarity=0.281 Sum_probs=57.2
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEc--CEEc---CCCCCccccccccccceEEEE
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQL---EDGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~--g~~L---~d~~~L~~~~i~~~~~i~l~~ 71 (134)
+|.||.++|+...-.+..++++.+|...+.. .|.++....|+.+ -+.+ +.+.+|.+.|+.+.+++.+.-
T Consensus 7 ~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 7 RLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 6889999999999999999999999999988 4677788888744 4554 334799999999999887743
No 110
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=97.23 E-value=0.0013 Score=41.77 Aligned_cols=49 Identities=22% Similarity=0.209 Sum_probs=36.4
Q ss_pred eeecCCc-EEEEEeccCCcHHHHHHHhhhhcC-------CCCCcceEEeCCeEEEEE
Q 032747 81 VKTLTGK-EIEIDIEPTDTIERIKERVEEKEG-------IPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 81 v~~~~~~-~~~~~V~~~~tV~~lK~~i~~~~g-------ip~~~q~L~~~g~~l~~~ 129 (134)
....+|. ...+.++++.||++||+.|-..|. .-+...+|+|.|++|.++
T Consensus 7 f~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~ 63 (111)
T PF13881_consen 7 FRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDN 63 (111)
T ss_dssp EEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SS
T ss_pred EEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCc
Confidence 3344676 778889999999999999998774 345688999999998753
No 111
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.00074 Score=47.07 Aligned_cols=64 Identities=28% Similarity=0.428 Sum_probs=57.2
Q ss_pred CCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEE
Q 032747 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
.++.+.+.+..-+|+.++|.++++..|+.+..|+++++|..+.|...|..+++..|....+.+.
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqvi 218 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQVI 218 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEEE
Confidence 3567888899999999999999999999999999999999999999999999999977665443
No 112
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.16 E-value=0.0014 Score=38.26 Aligned_cols=44 Identities=20% Similarity=0.339 Sum_probs=37.3
Q ss_pred eeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeC
Q 032747 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQ 122 (134)
Q Consensus 78 ~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~ 122 (134)
++.|+-......++.|+|..+|-.+|++|...+|++- +|+|.|+
T Consensus 2 qVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQ 45 (80)
T cd01811 2 QVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQ 45 (80)
T ss_pred EEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEee
Confidence 3455656667889999999999999999999999977 8888875
No 113
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.13 E-value=0.0051 Score=36.78 Aligned_cols=68 Identities=21% Similarity=0.301 Sum_probs=55.5
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEc--CEEcC---CCCCccccccccccceEEE
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLV 70 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~--g~~L~---d~~~L~~~~i~~~~~i~l~ 70 (134)
+|.+|.++|+...-.+..++++++|..-+... |.++...+|..+ -+.+. .+.+|.+.|+.+.+++.+.
T Consensus 6 ~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 6 KLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 68899999999999999999999999999875 667777788743 55553 3569999999888888763
No 114
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.06 E-value=0.0077 Score=36.40 Aligned_cols=67 Identities=12% Similarity=0.190 Sum_probs=53.7
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEc--CEEcC--------CCCCccccccccccceEE
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE--------DGRTLADYNIQKESTLHL 69 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~--g~~L~--------d~~~L~~~~i~~~~~i~l 69 (134)
+|.+|.++|+.+.-.+..++|+++|..-|... +..+....|..+ -+.+. .+.||.+.|+.+.+++.+
T Consensus 6 ~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V 82 (85)
T cd01774 6 KIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFV 82 (85)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEE
Confidence 68899999999999999999999999999654 445567777754 35564 357999999988777765
No 115
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.90 E-value=0.0096 Score=34.79 Aligned_cols=64 Identities=19% Similarity=0.254 Sum_probs=51.9
Q ss_pred EeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCC-----CceEEEEcCEEcCCCCCccccccccccceEE
Q 032747 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-----DQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (134)
Q Consensus 6 ~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~-----~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l 69 (134)
+.-+|..+.+.++.-.++..|-.-+.+...+.. ...+..-.++.|.++..|.+|+|.+|+.+.+
T Consensus 12 t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 12 TNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 445689999999999999999988777655432 3456667789999999999999999998864
No 116
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0026 Score=47.16 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=41.8
Q ss_pred CcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEEec
Q 032747 86 GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYFSN 131 (134)
Q Consensus 86 ~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~~~ 131 (134)
...++++|+.+..+.+||+-++.+.|+|+++-+.+|.|+.|...|.
T Consensus 13 ~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~tt 58 (446)
T KOG0006|consen 13 SHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTT 58 (446)
T ss_pred cCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCce
Confidence 4578899999999999999999999999999999999999987653
No 117
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.0095 Score=41.61 Aligned_cols=73 Identities=15% Similarity=0.273 Sum_probs=55.1
Q ss_pred EEEEEeCCCC-EEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEE-EcC-----EEcC-CCCCccccccccccceEEEEEe
Q 032747 2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLADYNIQKESTLHLVLRL 73 (134)
Q Consensus 2 ~i~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~g-----~~L~-d~~~L~~~~i~~~~~i~l~~~~ 73 (134)
++.|.+..-. ......+++.|+.++|.+++..+|.+++.+.|. |.| ..|+ ++..|+.|+..+|-.||+.-..
T Consensus 3 ~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~ 82 (234)
T KOG3206|consen 3 RVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSN 82 (234)
T ss_pred EEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecC
Confidence 4555443321 244567899999999999999999999999887 443 3464 5678999999999999986654
Q ss_pred e
Q 032747 74 R 74 (134)
Q Consensus 74 ~ 74 (134)
.
T Consensus 83 ~ 83 (234)
T KOG3206|consen 83 A 83 (234)
T ss_pred c
Confidence 3
No 118
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=96.50 E-value=0.0091 Score=34.24 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=34.4
Q ss_pred cCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEE
Q 032747 84 LTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILF 127 (134)
Q Consensus 84 ~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~ 127 (134)
.+++.+++.|.|+.++.++-++-++++|+.++...|.|+++.|+
T Consensus 4 ~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ld 47 (65)
T PF11470_consen 4 YNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLD 47 (65)
T ss_dssp TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEES
T ss_pred cCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEec
Confidence 46789999999999999999999999999999999999999875
No 119
>PRK06437 hypothetical protein; Provisional
Probab=96.40 E-value=0.052 Score=31.21 Aligned_cols=60 Identities=17% Similarity=0.313 Sum_probs=45.2
Q ss_pred EEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEE
Q 032747 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 4 ~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
+++-.+++...++++...|+.+|-++ .++++...-+..+|+.+. .++-+++|+.|.+.--
T Consensus 4 ~~~v~g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~ 63 (67)
T PRK06437 4 MIRVKGHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEV 63 (67)
T ss_pred eEEecCCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEec
Confidence 34444566678888899999988765 477888888889999997 5556778899887543
No 120
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=96.37 E-value=0.021 Score=34.55 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=38.6
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCC---CceEEEEc
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLIFA 46 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~---~~q~L~~~ 46 (134)
...++.+.|+.+.+.+.|++++.+|++.|.+++|... +...|.|-
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Yl 49 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYV 49 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEE
Confidence 4578889999999999999999999999999999886 45566664
No 121
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=96.29 E-value=0.059 Score=31.66 Aligned_cols=62 Identities=24% Similarity=0.337 Sum_probs=48.5
Q ss_pred EEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCC-CceEEEE----cC--EEcCCCCCccccccccccc
Q 032747 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF----AG--KQLEDGRTLADYNIQKEST 66 (134)
Q Consensus 5 v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~-~~q~L~~----~g--~~L~d~~~L~~~~i~~~~~ 66 (134)
|+.++|....+++++++|+.+|=++|.+..++.. +..-|.+ +| .-|+.+++|.++.......
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~ 69 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPP 69 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSS
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCC
Confidence 5678999999999999999999999999999864 4567777 22 3478888899887663333
No 122
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.0021 Score=47.87 Aligned_cols=71 Identities=27% Similarity=0.413 Sum_probs=52.4
Q ss_pred EEEEEeCCCCE--EEEEEcCCCcHHHHHHHHHhhhCC-C-CCceEEEEcCEEcCCCCCccccccc--cccceEEEEE
Q 032747 2 QIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEGI-P-PDQQRLIFAGKQLEDGRTLADYNIQ--KESTLHLVLR 72 (134)
Q Consensus 2 ~i~v~~~~g~~--~~~~v~~~~tv~~lK~~i~~~~gi-~-~~~q~L~~~g~~L~d~~~L~~~~i~--~~~~i~l~~~ 72 (134)
++.+|..+.+. ..+..+..+||++||..++...-- | ..+|||+|.|+.|.|...|.+.-.+ .-.++|++..
T Consensus 11 ~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvcn 87 (391)
T KOG4583|consen 11 TLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVCN 87 (391)
T ss_pred EEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhcC
Confidence 56778887544 556677889999999999988632 2 2589999999999999988887542 2345555444
No 123
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=96.14 E-value=0.068 Score=32.48 Aligned_cols=64 Identities=20% Similarity=0.246 Sum_probs=44.5
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEc----C-EEcC-CCCCccccccccccceEEEEEeecc
Q 032747 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G-KQLE-DGRTLADYNIQKESTLHLVLRLRGG 76 (134)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~----g-~~L~-d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (134)
.++..++..+||+.+...+.+.+.+ ...-||.-. + ..|. .+.|+.+.++.+|-+|.+-.+..+|
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DG 84 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDG 84 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS
T ss_pred HhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCC
Confidence 5667889999999999999999999 666788732 2 4564 5579999999999988877765443
No 124
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=96.10 E-value=0.038 Score=32.93 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=37.8
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEE
Q 032747 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 49 (134)
Q Consensus 3 i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~ 49 (134)
|.|.... .+.+.++++.+..+|.++|..+.++|++...|.|....
T Consensus 5 vKV~f~~--tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 5 VKVHFKY--TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA 49 (80)
T ss_pred EEEEEEE--EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence 4454432 88899999999999999999999999999999997543
No 125
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.08 E-value=0.017 Score=35.77 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=33.5
Q ss_pred EEEEec--cCCcHHHHHHHhhhhcC--CCCCcceEEeCCeEEEEEe
Q 032747 89 IEIDIE--PTDTIERIKERVEEKEG--IPPVQQRYPIQSFILFYFS 130 (134)
Q Consensus 89 ~~~~V~--~~~tV~~lK~~i~~~~g--ip~~~q~L~~~g~~l~~~~ 130 (134)
..+++. .+.||..||.+|.+..+ ..-..++|+|+|++|-+..
T Consensus 14 l~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t 59 (97)
T PF10302_consen 14 LPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHT 59 (97)
T ss_pred ceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccc
Confidence 566666 68899999999999874 4455788999999987654
No 126
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=95.85 E-value=0.015 Score=34.36 Aligned_cols=56 Identities=23% Similarity=0.331 Sum_probs=43.6
Q ss_pred EcCCCcHHHHHHHHHhhhC-CCCCceEEEEcCEEcCCCCCcccc-ccccccceEEEEE
Q 032747 17 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADY-NIQKESTLHLVLR 72 (134)
Q Consensus 17 v~~~~tv~~lK~~i~~~~g-i~~~~q~L~~~g~~L~d~~~L~~~-~i~~~~~i~l~~~ 72 (134)
|.++++|.++++-+..... ..-....|.++|..|++...|+++ |+++|+.+.+...
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~ 58 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE 58 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence 5688999999999887643 334567888999999998888887 4777777776543
No 127
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=95.70 E-value=0.02 Score=33.76 Aligned_cols=35 Identities=14% Similarity=0.065 Sum_probs=28.8
Q ss_pred ccCCcHHHHHHHhhhhcC-CCCCcceEE--eCCeEEEE
Q 032747 94 EPTDTIERIKERVEEKEG-IPPVQQRYP--IQSFILFY 128 (134)
Q Consensus 94 ~~~~tV~~lK~~i~~~~g-ip~~~q~L~--~~g~~l~~ 128 (134)
.++.||++||..|+...+ +++..|+|. +.|+.|.+
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d 57 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKD 57 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCC
Confidence 477899999999999876 689999996 67777653
No 128
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=95.54 E-value=0.13 Score=37.28 Aligned_cols=106 Identities=17% Similarity=0.348 Sum_probs=71.4
Q ss_pred EEEcCCCcHHHHHHHHHhhhCCCCCceEEEEc----C--EEcCCCCCccccccccccceEEEEEeec-------------
Q 032747 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G--KQLEDGRTLADYNIQKESTLHLVLRLRG------------- 75 (134)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~----g--~~L~d~~~L~~~~i~~~~~i~l~~~~~~------------- 75 (134)
+-|+.+++|++|-..|.+..|+|++..-++|. + ..++...++....+.+|+.|.+......
T Consensus 89 ~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~~ 168 (249)
T PF12436_consen 89 VYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVKE 168 (249)
T ss_dssp EEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHHH
T ss_pred EEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHHH
Confidence 46889999999999999999999976666665 2 4578889999999999999987764421
Q ss_pred -------ceeeeee---ecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEE
Q 032747 76 -------GTMIKVK---TLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYP 120 (134)
Q Consensus 76 -------~~~i~v~---~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~ 120 (134)
.+.+.+. ...+..+++.+....|-.+|-+.|++..|+.|..-+|+
T Consensus 169 Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 169 YYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp HHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred HHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 1233332 23355899999999999999999999999999887775
No 129
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=95.44 E-value=0.21 Score=28.89 Aligned_cols=52 Identities=10% Similarity=0.162 Sum_probs=38.8
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEE
Q 032747 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
...++++++.|+.+|-+++ ++++..-.+..+|+.+.. +.-+++|+.|.+.--
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~~ 66 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIPV 66 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEcc
Confidence 5667888899999988766 566666777789998853 455677888877543
No 130
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=95.41 E-value=0.17 Score=28.69 Aligned_cols=63 Identities=14% Similarity=0.314 Sum_probs=41.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEee
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (134)
|+|.+ +|+.+.+ +..|+.+|.+.+ ++++....+..+++.++ ...-++.-+.+|+.|.+.--..
T Consensus 1 m~i~~---Ng~~~~~---~~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V~ 63 (65)
T PRK06488 1 MKLFV---NGETLQT---EATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPMQ 63 (65)
T ss_pred CEEEE---CCeEEEc---CcCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEecc
Confidence 45555 5666665 346899988765 55665566778898876 3334456678899998754433
No 131
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.0097 Score=33.80 Aligned_cols=39 Identities=21% Similarity=0.387 Sum_probs=31.2
Q ss_pred eeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceE
Q 032747 81 VKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRY 119 (134)
Q Consensus 81 v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L 119 (134)
++..-|+...+..++.+||+++|..|+.++|-.++...|
T Consensus 6 ~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl 44 (73)
T KOG3493|consen 6 LNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVL 44 (73)
T ss_pred hhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHH
Confidence 333347788888899999999999999999977765543
No 132
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=95.24 E-value=0.059 Score=36.40 Aligned_cols=45 Identities=22% Similarity=0.423 Sum_probs=38.1
Q ss_pred eeeeeeecCC----cEEEEEeccCCcHHHHHHHhhhhcCCCCCcc-eEEe
Q 032747 77 TMIKVKTLTG----KEIEIDIEPTDTIERIKERVEEKEGIPPVQQ-RYPI 121 (134)
Q Consensus 77 ~~i~v~~~~~----~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q-~L~~ 121 (134)
+.|+|++.+| .++.+.+.++.||.+|+..|....++|...| .|.+
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~ 50 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTT 50 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEE
Confidence 3578888888 5888999999999999999999999998884 3444
No 133
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=95.19 E-value=0.14 Score=30.72 Aligned_cols=46 Identities=11% Similarity=0.140 Sum_probs=36.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCC-CceEEEEcC
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAG 47 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~-~~q~L~~~g 47 (134)
|+|.+.. +|....+.++++.+..+|+++|.+++++.. ....|.|..
T Consensus 1 ~~vK~~~-~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~D 47 (82)
T cd06407 1 VRVKATY-GEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLD 47 (82)
T ss_pred CEEEEEe-CCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEEC
Confidence 4566644 567889999999999999999999999865 566777754
No 134
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=95.17 E-value=0.12 Score=30.28 Aligned_cols=59 Identities=12% Similarity=0.210 Sum_probs=42.3
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCC----CCCceEEEEcCEEcCCCCCccccccccccceEEEEEeec
Q 032747 12 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (134)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi----~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 75 (134)
...++++.+.|+.+|.+.+....+- ......+..||+..+ .+.-+++|+.|.+.....|
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~G 79 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSG 79 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCC
Confidence 4567777889999999999887542 234556778888876 3456788899987654433
No 135
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.021 Score=44.42 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=41.0
Q ss_pred cCCcEEEEE-eccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 84 LTGKEIEID-IEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 84 ~~~~~~~~~-V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
..|+.+.++ ++.++|+..+|+++-..+|+||+.|.+++.|.++.++
T Consensus 10 W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd 56 (473)
T KOG1872|consen 10 WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDD 56 (473)
T ss_pred ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEeccccccc
Confidence 346778877 8899999999999999999999999999999988765
No 136
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=94.82 E-value=0.21 Score=29.35 Aligned_cols=45 Identities=16% Similarity=0.334 Sum_probs=37.4
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcC
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g 47 (134)
++.++. ++....+.++++.|..+|+.+|.+.++.+.....|.|..
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 455655 567788999999999999999999999887778888864
No 137
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=94.81 E-value=0.14 Score=30.74 Aligned_cols=59 Identities=20% Similarity=0.330 Sum_probs=41.6
Q ss_pred EEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEE
Q 032747 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (134)
+...++-..+++.||..++.+.++.-+.-.++..+..|+++++|-+.+++-...+.+.+
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnv 63 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNV 63 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEE
Confidence 34567788899999999999999999999999999889999999999997666666543
No 138
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=94.77 E-value=0.14 Score=31.07 Aligned_cols=43 Identities=14% Similarity=0.298 Sum_probs=36.9
Q ss_pred eeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCC---CcceEEe
Q 032747 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPP---VQQRYPI 121 (134)
Q Consensus 79 i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~---~~q~L~~ 121 (134)
...+.+.|+.+.+.+.++..+.+|++.|.++.|+.. ....|.|
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 356678899999999999999999999999999887 4666665
No 139
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=94.51 E-value=0.01 Score=43.91 Aligned_cols=77 Identities=18% Similarity=0.439 Sum_probs=0.0
Q ss_pred EEEEeCCCCEEEEEEc---C--CCcHHHHHHHHHh----------hhCCCCCceE-----EEEcCEEcCCCCCccccccc
Q 032747 3 IFVKTLTGKTITLEVE---S--SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLADYNIQ 62 (134)
Q Consensus 3 i~v~~~~g~~~~~~v~---~--~~tv~~lK~~i~~----------~~gi~~~~q~-----L~~~g~~L~d~~~L~~~~i~ 62 (134)
|++|......+.+.+. + ++||.++|..+++ ..++|.+..+ |+|+.+++.|.++|.+..-.
T Consensus 81 V~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l~~ 160 (309)
T PF12754_consen 81 VHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVLAD 160 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHHhc
Confidence 4455554344433332 3 5889999999999 8889988777 99999999889998887543
Q ss_pred -------cccceEEEEEeecceee
Q 032747 63 -------KESTLHLVLRLRGGTMI 79 (134)
Q Consensus 63 -------~~~~i~l~~~~~~~~~i 79 (134)
.+.++.+.+...||..+
T Consensus 161 ~~~~l~~~~~~vE~gvMVlGGa~~ 184 (309)
T PF12754_consen 161 SESRLLSGGKEVEFGVMVLGGAAV 184 (309)
T ss_dssp ------------------------
T ss_pred ccchhccCCceEEEEEEEECCccc
Confidence 35566665555555443
No 140
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=94.43 E-value=0.26 Score=28.04 Aligned_cols=64 Identities=23% Similarity=0.487 Sum_probs=48.9
Q ss_pred CCCEEEEEEcCCCcHHHHHHHHHhhh---CCCCCceEEE-EcCEEcCCCCCccccccccccceEEEEE
Q 032747 9 TGKTITLEVESSDTIDNVKAKIQDKE---GIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~---gi~~~~q~L~-~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
+|+...++.+++...-...++--... |-|++...|. -+|..|+-++.++|||+.++-++.+.++
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEee
Confidence 67777888888887666655544443 4677777777 4588999999999999999988887665
No 141
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=94.14 E-value=0.25 Score=29.28 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=42.9
Q ss_pred CEEEEEeCC------C-CEEEEEEcCCCcHHHHHHHHHhhhC-CCC--CceEEEEcCEEcCCCCCccccccccccceEEE
Q 032747 1 MQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (134)
Q Consensus 1 m~i~v~~~~------g-~~~~~~v~~~~tv~~lK~~i~~~~g-i~~--~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 70 (134)
|+|+|+... | ....++++.+.|+.+|.+.+..... ... ....+..||+...+ +.-+++|+.|.+.
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~-----~~~l~dgDeVai~ 76 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTE-----SAALKDGDELAII 76 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCC-----CcCcCCCCEEEEe
Confidence 556665543 3 4566788889999999999977641 111 12245677887643 3456778888775
Q ss_pred EE
Q 032747 71 LR 72 (134)
Q Consensus 71 ~~ 72 (134)
..
T Consensus 77 Pp 78 (82)
T PLN02799 77 PP 78 (82)
T ss_pred CC
Confidence 43
No 142
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=94.11 E-value=0.19 Score=30.01 Aligned_cols=37 Identities=11% Similarity=0.193 Sum_probs=34.0
Q ss_pred EEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCe
Q 032747 88 EIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSF 124 (134)
Q Consensus 88 ~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~ 124 (134)
++.++|.+.-+.++|+.+|.++.++|++.-.|.|...
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 8889999999999999999999999999999988654
No 143
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=93.80 E-value=0.098 Score=32.16 Aligned_cols=35 Identities=23% Similarity=0.202 Sum_probs=31.6
Q ss_pred cEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEe
Q 032747 87 KEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPI 121 (134)
Q Consensus 87 ~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~ 121 (134)
.++-+...++.||-+||.++.....-|+.+|+|+.
T Consensus 12 ttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~k 46 (110)
T KOG4495|consen 12 TTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYK 46 (110)
T ss_pred eeEEeecCccccHHHHHHHHHHHHhCCCcchheee
Confidence 36778889999999999999999999999999975
No 144
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=93.80 E-value=0.22 Score=29.11 Aligned_cols=44 Identities=14% Similarity=0.247 Sum_probs=39.0
Q ss_pred eeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCC
Q 032747 80 KVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQS 123 (134)
Q Consensus 80 ~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g 123 (134)
.|-.++|+...+.|.+..|+.++=++++++.|+.++.-.++..|
T Consensus 3 ~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 3 RVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 35567899999999999999999999999999999988887764
No 145
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=93.68 E-value=0.68 Score=26.86 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=39.2
Q ss_pred eeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEEe
Q 032747 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYFS 130 (134)
Q Consensus 79 i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~~ 130 (134)
+.|-.++++...+.|.+..|+.+.=+++.++.|+.+..-.++..|.-..=.|
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~ 54 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDW 54 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-T
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccC
Confidence 4566788999999999999999999999999999999887776554444333
No 146
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=0.36 Score=29.91 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=44.5
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILF 127 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~ 127 (134)
+.+.|+..++....+.|..+.+-.-|..--+++.|++....|+.|.|+.+.
T Consensus 21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~ 71 (99)
T KOG1769|consen 21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIR 71 (99)
T ss_pred EEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcC
Confidence 345566677888899999999999999999999999999999999998764
No 147
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=93.45 E-value=0.81 Score=27.69 Aligned_cols=53 Identities=19% Similarity=0.282 Sum_probs=39.4
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccc
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~ 58 (134)
+|.+.. +|....+.++++.+..+|.++|..++++. ...++.|... .|.-++++
T Consensus 4 kVKv~~-~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE--GD~iti~s 56 (86)
T cd06408 4 RVKVHA-QDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD--GDMITMGD 56 (86)
T ss_pred EEEEEe-cCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC--CCCccccC
Confidence 455543 56788999999999999999999999985 4666666655 44445544
No 148
>smart00455 RBD Raf-like Ras-binding domain.
Probab=93.36 E-value=0.32 Score=28.22 Aligned_cols=43 Identities=14% Similarity=0.250 Sum_probs=38.6
Q ss_pred eeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCC
Q 032747 81 VKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQS 123 (134)
Q Consensus 81 v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g 123 (134)
+-.++|+...+.+.|..|+.++=+++.++.|+.++.-.++..|
T Consensus 4 v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 4 VHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred EECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 4467899999999999999999999999999999998888854
No 149
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=93.01 E-value=0.89 Score=26.73 Aligned_cols=59 Identities=15% Similarity=0.262 Sum_probs=40.8
Q ss_pred EEEEEEcCC-CcHHHHHHHHHhhhC-C--CCCceEEEEcCEEcCCCCCccccccccccceEEEEEeec
Q 032747 12 TITLEVESS-DTIDNVKAKIQDKEG-I--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (134)
Q Consensus 12 ~~~~~v~~~-~tv~~lK~~i~~~~g-i--~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 75 (134)
...++++.+ .|+.+|++.+....+ . ......+..+++...+ +.-+++|+.|.+.....|
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsG 79 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSG 79 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCC
Confidence 356788876 899999999988863 1 1133466678887764 456777888887654433
No 150
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=92.95 E-value=0.16 Score=38.52 Aligned_cols=75 Identities=20% Similarity=0.298 Sum_probs=61.0
Q ss_pred CEEEEEeC--CCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCC--CCccccccccccceEEEEEeec
Q 032747 1 MQIFVKTL--TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG--RTLADYNIQKESTLHLVLRLRG 75 (134)
Q Consensus 1 m~i~v~~~--~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~--~~L~~~~i~~~~~i~l~~~~~~ 75 (134)
|.++|... ....+++.+..+.....|+..+....|++.+..-|.|+++++.+. ..+..+|+..++.+.+..+..+
T Consensus 1 M~~tvs~~l~~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~d 79 (380)
T KOG0012|consen 1 MSLTVSVALNFEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSSD 79 (380)
T ss_pred CeEEEEEEecceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCCCC
Confidence 44444333 556788999999999999999999999999999999999998654 6799999999999887666543
No 151
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=92.91 E-value=0.75 Score=26.09 Aligned_cols=61 Identities=13% Similarity=0.197 Sum_probs=41.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEE
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
|+|++ +|+.+.+ .++.|+.+|-+. .++++...-+.+++..+..+.-= .+ +++|+.|.+.--
T Consensus 1 m~i~v---NG~~~~~--~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~~-~~-L~~gD~ieIv~~ 61 (65)
T PRK05863 1 MIVVV---NEEQVEV--DEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDWA-TK-LRDGARLEVVTA 61 (65)
T ss_pred CEEEE---CCEEEEc--CCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHhh-hh-cCCCCEEEEEee
Confidence 45554 5555444 577888877654 47788888889999977533222 34 889999987543
No 152
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=92.87 E-value=0.31 Score=37.24 Aligned_cols=65 Identities=20% Similarity=0.305 Sum_probs=51.2
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCC-CceEEE--EcCEEcC-CCCCccccccccccc
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLI--FAGKQLE-DGRTLADYNIQKEST 66 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~-~~q~L~--~~g~~L~-d~~~L~~~~i~~~~~ 66 (134)
.|.|+..+|......++...||.+++..|.....-.+ ..+.|. |--++|. +..||++.|+.+...
T Consensus 307 sIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvl 375 (380)
T KOG2086|consen 307 SIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVL 375 (380)
T ss_pred eEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhh
Confidence 4788999999999999999999999999998875433 356665 3468885 557899999976543
No 153
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=92.79 E-value=0.62 Score=36.72 Aligned_cols=73 Identities=14% Similarity=0.152 Sum_probs=56.5
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCC----C--CCceEEE-EcCEEcCCCCCccccccccccceEEEEEee
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI----P--PDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi----~--~~~q~L~-~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (134)
+++|...+ +...+-++.+.++.+|-..+-+..+- + +....|. .+|.+|+.+.+|.+.|+.||+.+++.-...
T Consensus 4 RVtV~~~~-~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~~ 82 (452)
T TIGR02958 4 RVTVLAGR-RAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPASA 82 (452)
T ss_pred EEEEeeCC-eeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCCC
Confidence 57777654 55778888999999999999888753 1 2234444 468899999999999999999999987544
Q ss_pred c
Q 032747 75 G 75 (134)
Q Consensus 75 ~ 75 (134)
.
T Consensus 83 ~ 83 (452)
T TIGR02958 83 T 83 (452)
T ss_pred C
Confidence 3
No 154
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=92.76 E-value=0.88 Score=26.23 Aligned_cols=62 Identities=13% Similarity=0.218 Sum_probs=46.4
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCC--CCCceEEEEcCEEcCCCCCccccccccccceEEEEEeec
Q 032747 12 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (134)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi--~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 75 (134)
...+.+....|+.+|.+.+.....- ......+..||+...+ .-.+.-+++|+.|.+.....|
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsG 76 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSG 76 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTST
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCC
Confidence 5567888999999999999887621 2257788899999887 355666788999987544333
No 155
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=92.62 E-value=0.71 Score=26.95 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=38.4
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEc
Q 032747 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (134)
Q Consensus 3 i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 46 (134)
+.|-.++|+.-.+.+.|+.|+.++-+++.++.|+.++.--+...
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~ 45 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLL 45 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEe
Confidence 45677899999999999999999999999999999977666654
No 156
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=92.46 E-value=0.88 Score=27.19 Aligned_cols=61 Identities=11% Similarity=0.255 Sum_probs=41.0
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhhhCC------C-----CCceEEEEcCEEcCCCCCccccccccccceEEEEEeec
Q 032747 11 KTITLEVESSDTIDNVKAKIQDKEGI------P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (134)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi------~-----~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 75 (134)
....++++ ..|+.+|.+.+.+...- . .....+..+|+..+.+.. ..+++|+.|.+.....|
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsG 87 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSG 87 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcC
Confidence 34567776 89999999999877531 0 123566678887764431 56788999987654444
No 157
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=92.43 E-value=0.33 Score=28.38 Aligned_cols=33 Identities=27% Similarity=0.485 Sum_probs=30.1
Q ss_pred eeecCCcEEEEEeccCCcHHHHHHHhhhhcCCC
Q 032747 81 VKTLTGKEIEIDIEPTDTIERIKERVEEKEGIP 113 (134)
Q Consensus 81 v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip 113 (134)
|..++|...++.|+++.|+.+|=.+|++..|+.
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~ 33 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLK 33 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTS
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCC
Confidence 467888999999999999999999999999975
No 158
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.25 E-value=0.16 Score=35.77 Aligned_cols=45 Identities=24% Similarity=0.312 Sum_probs=41.1
Q ss_pred CCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 85 ~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
+++.+.+.+...+||.++|.+++...|+.+.-|+++++|.++-.+
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dk 199 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDK 199 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceecc
Confidence 567888999999999999999999999999999999999988765
No 159
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=92.23 E-value=2.2 Score=29.25 Aligned_cols=71 Identities=28% Similarity=0.368 Sum_probs=49.2
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCC-ceEEEEc---C---EEcCCCCCccccccc-cccceEEEEE
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA---G---KQLEDGRTLADYNIQ-KESTLHLVLR 72 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~-~q~L~~~---g---~~L~d~~~L~~~~i~-~~~~i~l~~~ 72 (134)
.+.|..++|....+.+++.+|+.++.+.+..+.|++.. ...|.+. + ..++...++.+.... ....+++..+
T Consensus 5 ~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr~r 83 (207)
T smart00295 5 VLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFRVK 83 (207)
T ss_pred EEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEEEE
Confidence 57788899999999999999999999999999999542 2344332 1 346666666666543 2234444433
No 160
>smart00455 RBD Raf-like Ras-binding domain.
Probab=92.22 E-value=0.93 Score=26.23 Aligned_cols=49 Identities=22% Similarity=0.322 Sum_probs=41.4
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcC--EEcC
Q 032747 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLE 51 (134)
Q Consensus 3 i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g--~~L~ 51 (134)
..|-.++|+...+.+.|+.|+.++-+.+-++.|+.++.-.+...| ++|+
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~ld 52 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEKKPLD 52 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccee
Confidence 356678999999999999999999999999999999888887754 4443
No 161
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=91.90 E-value=0.8 Score=26.98 Aligned_cols=43 Identities=12% Similarity=0.082 Sum_probs=35.1
Q ss_pred eeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEE
Q 032747 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYP 120 (134)
Q Consensus 78 ~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~ 120 (134)
.|.|+.++|+.+.-+...++|+.+|..-+....+.....+.|+
T Consensus 6 ~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~ 48 (80)
T smart00166 6 RLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLN 48 (80)
T ss_pred EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEE
Confidence 4678888999999999999999999999976666665556664
No 162
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=91.82 E-value=1.4 Score=24.80 Aligned_cols=62 Identities=16% Similarity=0.324 Sum_probs=41.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEE
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
|+|++ +|+.+ ++..+.|+.++-.. .++++....+.++|..+.... -.+.-+++|+.|.+.--
T Consensus 1 m~i~v---NG~~~--~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~~-~~~~~l~~gD~vei~~~ 62 (66)
T PRK05659 1 MNIQL---NGEPR--ELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRSQ-HASTALREGDVVEIVHA 62 (66)
T ss_pred CEEEE---CCeEE--EcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHHH-cCcccCCCCCEEEEEEE
Confidence 45554 55544 55678898887754 577887888889998876332 23344678999987543
No 163
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=91.69 E-value=0.94 Score=26.62 Aligned_cols=44 Identities=20% Similarity=0.382 Sum_probs=35.0
Q ss_pred EEEEEeCCCCEEE-EEEcCCCcHHHHHHHHHhhhCCCCCceEEEEc
Q 032747 2 QIFVKTLTGKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (134)
Q Consensus 2 ~i~v~~~~g~~~~-~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 46 (134)
++.+... +.... +.+.++.|..+|+.+|++.++.+.....|.|.
T Consensus 3 ~vK~~~~-~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~ 47 (84)
T PF00564_consen 3 RVKVRYG-GDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK 47 (84)
T ss_dssp EEEEEET-TEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE
T ss_pred EEEEEEC-CeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee
Confidence 3455443 34444 89999999999999999999998788888886
No 164
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=91.36 E-value=0.37 Score=39.69 Aligned_cols=43 Identities=19% Similarity=0.340 Sum_probs=38.8
Q ss_pred ecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeE
Q 032747 83 TLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFI 125 (134)
Q Consensus 83 ~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~ 125 (134)
+.+...+++.+++++|..+++..|...+|+|...|.|.|++..
T Consensus 321 ~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~ 363 (732)
T KOG4250|consen 321 MVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGL 363 (732)
T ss_pred eccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCc
Confidence 4457789999999999999999999999999999999999654
No 165
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=91.07 E-value=1.4 Score=25.68 Aligned_cols=45 Identities=22% Similarity=0.311 Sum_probs=35.1
Q ss_pred EEEEEeCCCCEEEEEEc-CCCcHHHHHHHHHhhhCCCCCceEEEEcC
Q 032747 2 QIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~-~~~tv~~lK~~i~~~~gi~~~~q~L~~~g 47 (134)
++.++.. |....+.+. .+.|..+|+.+|.+.++.+.....+.|..
T Consensus 2 ~vK~~~~-~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 2 RVKVKYG-GEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred cEEEEec-CCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 4556553 567788888 89999999999999999876566666654
No 166
>KOG4261 consensus Talin [Cytoskeleton]
Probab=90.56 E-value=1.4 Score=36.96 Aligned_cols=101 Identities=24% Similarity=0.339 Sum_probs=78.4
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhhhC---CCCCceEEEEc------CEEcCCCCCccccccccccceEEEEEeecceeee
Q 032747 10 GKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFA------GKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIK 80 (134)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~g---i~~~~q~L~~~------g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~ 80 (134)
+-.-++.+.|+++|.|--.-|..++. ..+.+..|+.. |-.|+..+++..|-+.+++++...-+ +-+..
T Consensus 12 ~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~k---~r~lk 88 (1003)
T KOG4261|consen 12 NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKRK---QRPLK 88 (1003)
T ss_pred ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhhh---cccce
Confidence 44567889999999998888877753 12445555433 55688899999999999999865333 34678
Q ss_pred eeecCCcEEEEEeccCCcHHHHHHHhhhhcCCC
Q 032747 81 VKTLTGKEIEIDIEPTDTIERIKERVEEKEGIP 113 (134)
Q Consensus 81 v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip 113 (134)
++.++|..-++.|+.+.+|.+|---|+.+-||-
T Consensus 89 vrmldg~vkti~vd~sq~v~~L~~~ic~~igIt 121 (1003)
T KOG4261|consen 89 VRMLDGAVKTIMVDDSQPVSQLMMTICNKIGIT 121 (1003)
T ss_pred eeecccccceeeecccccHHHHHHHHHhccCcc
Confidence 899999999999999999999999999887763
No 167
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=90.51 E-value=1.7 Score=24.21 Aligned_cols=54 Identities=20% Similarity=0.337 Sum_probs=36.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEE
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 70 (134)
|+|++ +|+ .+++..+.|+.+||.++.... -.++++|-+..++..|.+ |+.|.+.
T Consensus 1 M~I~v---N~k--~~~~~~~~tl~~lr~~~k~~~------DI~I~NGF~~~~d~~L~e-----~D~v~~I 54 (57)
T PF14453_consen 1 MKIKV---NEK--EIETEENTTLFELRKESKPDA------DIVILNGFPTKEDIELKE-----GDEVFLI 54 (57)
T ss_pred CEEEE---CCE--EEEcCCCcCHHHHHHhhCCCC------CEEEEcCcccCCccccCC-----CCEEEEE
Confidence 55655 333 467778999999998776532 256799988876665554 6666553
No 168
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=90.44 E-value=2.2 Score=24.67 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=40.5
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcC--EEcCCCCCccc
Q 032747 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLEDGRTLAD 58 (134)
Q Consensus 3 i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g--~~L~d~~~L~~ 58 (134)
+.|..++|+.-.+.+.|+.|+.+.-..+-++.|+.++.-.+...| ++++-+...+.
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~d~~~ 60 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQDSSS 60 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTSBGGG
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCCceee
Confidence 567778999999999999999999999999999998776665443 55654444443
No 169
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=90.29 E-value=1.5 Score=25.77 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=35.8
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCc-ceEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQ-QRYP 120 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~-q~L~ 120 (134)
..|.|+.++|+.+.-++.+++|+.+|..-+......+... +.|+
T Consensus 7 ~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~ 51 (82)
T PF00789_consen 7 VRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELI 51 (82)
T ss_dssp EEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEE
T ss_pred EEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEE
Confidence 3466788889999999999999999999998777766654 6664
No 170
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=90.11 E-value=0.95 Score=37.41 Aligned_cols=42 Identities=24% Similarity=0.460 Sum_probs=37.6
Q ss_pred CCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEc
Q 032747 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50 (134)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L 50 (134)
++..+.+-++++.|+..+++.|+..+|+|...|.|+|.|...
T Consensus 323 ~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 323 QATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred cceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 456788899999999999999999999999999999997654
No 171
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=89.78 E-value=1.1 Score=28.80 Aligned_cols=57 Identities=21% Similarity=0.481 Sum_probs=39.4
Q ss_pred EEcC-CCcHHHHHHHHHhhh----CCCC------CceEEEEc-----------------CEEc---CCCCCccccccccc
Q 032747 16 EVES-SDTIDNVKAKIQDKE----GIPP------DQQRLIFA-----------------GKQL---EDGRTLADYNIQKE 64 (134)
Q Consensus 16 ~v~~-~~tv~~lK~~i~~~~----gi~~------~~q~L~~~-----------------g~~L---~d~~~L~~~~i~~~ 64 (134)
.|+. ++|+.+|++.+.+.. |++| +..++.+. ...| +++.+|.++|+.+.
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE 100 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE 100 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence 4776 899999998887753 4554 23344432 1356 67788999999988
Q ss_pred cceEEEEE
Q 032747 65 STLHLVLR 72 (134)
Q Consensus 65 ~~i~l~~~ 72 (134)
+.|.+...
T Consensus 101 TEiSfF~~ 108 (122)
T PF10209_consen 101 TEISFFNM 108 (122)
T ss_pred ceeeeeCH
Confidence 88876543
No 172
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=89.72 E-value=2.1 Score=24.04 Aligned_cols=60 Identities=20% Similarity=0.389 Sum_probs=39.9
Q ss_pred CCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeec
Q 032747 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (134)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 75 (134)
+|+. ++++...|+.+|.+++ ++++....+..+|+.+..+. -.+.-+.+|+.|.+..-..|
T Consensus 5 Ng~~--~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~~-~~~~~L~~gD~V~ii~~v~G 64 (65)
T cd00565 5 NGEP--REVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRSE-WASTPLQDGDRIEIVTAVGG 64 (65)
T ss_pred CCeE--EEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHHH-cCceecCCCCEEEEEEeccC
Confidence 4444 4455788999988766 46677778889999875432 22345778999887554333
No 173
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=89.70 E-value=1.1 Score=26.58 Aligned_cols=35 Identities=11% Similarity=0.252 Sum_probs=32.2
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEc
Q 032747 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (134)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 46 (134)
++.+.+.+..+..+|..+|.+++..+++.-+|.|.
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 56678899999999999999999999999999986
No 174
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=89.53 E-value=3.1 Score=24.91 Aligned_cols=41 Identities=17% Similarity=0.286 Sum_probs=31.7
Q ss_pred EEEEEeCCCCEEEEEEcC--CCcHHHHHHHHHhhhCCCCCceEEEE
Q 032747 2 QIFVKTLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPDQQRLIF 45 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~--~~tv~~lK~~i~~~~gi~~~~q~L~~ 45 (134)
+|.+.. +|....+.+++ +.+..+|+++++..++++ ...|.|
T Consensus 2 ~vKaty-~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKY 44 (81)
T cd06396 2 NLKVTY-NGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKY 44 (81)
T ss_pred EEEEEE-CCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEE
Confidence 444533 57888899998 779999999999999998 444444
No 175
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=89.07 E-value=2.4 Score=25.43 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=36.7
Q ss_pred eeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEE
Q 032747 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYP 120 (134)
Q Consensus 78 ~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~ 120 (134)
.|.|+.++|+..+-+...++++.+|-.=+.. .|.+++.+.|+
T Consensus 7 ~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~ 48 (82)
T cd01773 7 RLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELL 48 (82)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEe
Confidence 5678889999999999999999999998887 67888888887
No 176
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=88.86 E-value=2.5 Score=24.64 Aligned_cols=39 Identities=13% Similarity=0.250 Sum_probs=33.4
Q ss_pred CCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCC
Q 032747 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQS 123 (134)
Q Consensus 85 ~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g 123 (134)
.+..+.+.+.++.|-.+|+.+|++..+++.....|.|..
T Consensus 9 ~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 9 GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 456888899999999999999999999987777777753
No 177
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=88.73 E-value=1.4 Score=30.21 Aligned_cols=38 Identities=32% Similarity=0.492 Sum_probs=33.4
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCC
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPP 114 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~ 114 (134)
..+.|...+|...++.++++.|+.++-..++.+.|++.
T Consensus 4 ~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~ 41 (207)
T smart00295 4 RVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRE 41 (207)
T ss_pred EEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCc
Confidence 45567788899999999999999999999999999854
No 178
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=88.53 E-value=2.8 Score=25.18 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=35.5
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEe
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPI 121 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~ 121 (134)
..|.++.++|+...-+++.++|+++|..=+.. .+-.++.+.|+.
T Consensus 5 ~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t 48 (85)
T cd01774 5 VKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVT 48 (85)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEec
Confidence 45778889999999999999999999999975 444557777763
No 179
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=88.52 E-value=2.9 Score=23.34 Aligned_cols=63 Identities=17% Similarity=0.192 Sum_probs=38.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEee
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (134)
|+|+| +|+. ++++++.|+.+|.+.+.. + ....+..+|....... -.+.-+++|++|.+.-...
T Consensus 1 m~i~v---Ng~~--~~~~~~~tl~~ll~~l~~----~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~~v~ 63 (65)
T PRK06944 1 MDIQL---NQQT--LSLPDGATVADALAAYGA----R-PPFAVAVNGDFVARTQ-HAARALAAGDRLDLVQPVA 63 (65)
T ss_pred CEEEE---CCEE--EECCCCCcHHHHHHhhCC----C-CCeEEEECCEEcCchh-cccccCCCCCEEEEEeecc
Confidence 44544 4554 455678899999876633 2 2456678888775322 2233367899998864433
No 180
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=87.30 E-value=1.9 Score=25.49 Aligned_cols=51 Identities=10% Similarity=0.119 Sum_probs=37.7
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCC-CCCcceEE--eCCeEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGI-PPVQQRYP--IQSFILF 127 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gi-p~~~q~L~--~~g~~l~ 127 (134)
-.|.|+.++|+.+..+++.++||.+|.+=+....+- ....+.|+ |.++.+.
T Consensus 5 t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~ 58 (79)
T cd01770 5 TSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELS 58 (79)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccC
Confidence 356788999999999999999999999999976532 22445554 5555443
No 181
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=87.26 E-value=3.6 Score=23.02 Aligned_cols=59 Identities=17% Similarity=0.340 Sum_probs=38.9
Q ss_pred CCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEee
Q 032747 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (134)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (134)
+|+.+ ++..+.|+.+|.+.+ ++++....+..+|+.+..+. -.++-+++|+.|.+.--..
T Consensus 4 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~~-~~~~~L~~gD~veii~~V~ 62 (64)
T TIGR01683 4 NGEPV--EVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRSE-WDDTILKEGDRIEIVTFVG 62 (64)
T ss_pred CCeEE--EcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHHH-cCceecCCCCEEEEEEecc
Confidence 45554 445778999988755 45666777778999874222 2334578899988754433
No 182
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.05 E-value=2.6 Score=30.96 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=51.8
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEc--CEEcC-C--CCCccccccccccceEE
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE-D--GRTLADYNIQKESTLHL 69 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~--g~~L~-d--~~~L~~~~i~~~~~i~l 69 (134)
++.|+.++|+++...+++..++..++.-+.-..+.....-.|..+ ...+. | .++|..+++.+.+++.+
T Consensus 212 rlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 212 RLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred EEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 578999999999999999999999999999988876644444322 23332 2 36788999888777754
No 183
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=87.02 E-value=4.6 Score=24.23 Aligned_cols=57 Identities=11% Similarity=0.176 Sum_probs=38.7
Q ss_pred CCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEE
Q 032747 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
+|+.+ +++.+.|+.+|-+. .++++...-+..+|..+. ...-++.-+++|+.|.+.--
T Consensus 24 NG~~~--~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv~~ 80 (84)
T PRK06083 24 NDQSI--QVDISSSLAQIIAQ----LSLPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLFQA 80 (84)
T ss_pred CCeEE--EcCCCCcHHHHHHH----cCCCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEEEE
Confidence 44443 34567788887764 467777777889999884 23344556788999987543
No 184
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=86.97 E-value=3.9 Score=23.10 Aligned_cols=63 Identities=13% Similarity=0.185 Sum_probs=40.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEe
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (134)
|+|+| +|+.+.+ ..+.|+.+|-+.+ +.+.....+..+++.++.+ .-++.-+++|+.|.+.--.
T Consensus 1 m~i~v---Ng~~~~~--~~~~tl~~ll~~l----~~~~~~vaVavN~~iv~r~-~w~~~~L~~gD~Ieii~~v 63 (66)
T PRK08053 1 MQILF---NDQPMQC--AAGQTVHELLEQL----NQLQPGAALAINQQIIPRE-QWAQHIVQDGDQILLFQVI 63 (66)
T ss_pred CEEEE---CCeEEEc--CCCCCHHHHHHHc----CCCCCcEEEEECCEEeChH-HcCccccCCCCEEEEEEEc
Confidence 45555 5555544 5778999988654 4445566777899888522 2233457789998875443
No 185
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=85.80 E-value=5.4 Score=24.64 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=33.1
Q ss_pred EeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEc
Q 032747 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (134)
Q Consensus 6 ~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 46 (134)
+-.+|++..+.|+.+.|..+|+.++.+.++++.. ..|.|.
T Consensus 18 ~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky~ 57 (97)
T cd06410 18 RYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKYQ 57 (97)
T ss_pred EEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEEE
Confidence 4457888889999999999999999999988775 555553
No 186
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=85.57 E-value=3.1 Score=24.34 Aligned_cols=43 Identities=16% Similarity=0.147 Sum_probs=37.3
Q ss_pred eecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCe
Q 032747 82 KTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSF 124 (134)
Q Consensus 82 ~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~ 124 (134)
-.++|+.-.+.+.+..|+.+.=.++.++.|++++.-.++.-|.
T Consensus 5 ~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 5 ILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred ECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 4577888999999999999999999999999988877776654
No 187
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=85.39 E-value=5.3 Score=23.16 Aligned_cols=42 Identities=17% Similarity=0.240 Sum_probs=32.3
Q ss_pred eeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEE
Q 032747 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYP 120 (134)
Q Consensus 78 ~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~ 120 (134)
.|.|+.++|+.+.-+.+.++|+.+|..=|.....- ...+.|+
T Consensus 4 ~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~ 45 (77)
T cd01767 4 KIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLM 45 (77)
T ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEE
Confidence 46778888999999999999999999999865432 4445554
No 188
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=84.74 E-value=5.4 Score=22.69 Aligned_cols=62 Identities=16% Similarity=0.196 Sum_probs=40.3
Q ss_pred CEEEEEeCCCCEEEEEEcCC-CcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEE
Q 032747 1 MQIFVKTLTGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~-~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
|+|+| +|+.+ ++..+ .||.+|-+ ..++++...-+.++|..+..+ .-.+.-+++|+.|.+.--
T Consensus 1 m~I~v---NG~~~--~~~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv~~ 63 (67)
T PRK07696 1 MNLKI---NGNQI--EVPESVKTVAELLT----HLELDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIVTF 63 (67)
T ss_pred CEEEE---CCEEE--EcCCCcccHHHHHH----HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEE
Confidence 45555 56655 44455 57887765 356777777788999988533 233445788999987543
No 189
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=84.02 E-value=2.6 Score=25.57 Aligned_cols=40 Identities=10% Similarity=0.284 Sum_probs=34.3
Q ss_pred eeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcce
Q 032747 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQR 118 (134)
Q Consensus 79 i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~ 118 (134)
+-|-.++|..+++++..+++..++-+.++.+-|+|.+-..
T Consensus 4 L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~ 43 (87)
T cd01777 4 LRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQN 43 (87)
T ss_pred EEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHh
Confidence 4455677899999999999999999999999999887553
No 190
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=83.58 E-value=3.3 Score=24.55 Aligned_cols=38 Identities=0% Similarity=0.002 Sum_probs=33.4
Q ss_pred EEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeE
Q 032747 88 EIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFI 125 (134)
Q Consensus 88 ~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~ 125 (134)
++.+.+.+..+.++|..+|.++...|+++-.|.|...-
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~~ 45 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRAPG 45 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecCCC
Confidence 56677888999999999999999999999999997543
No 191
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=83.56 E-value=7.3 Score=30.44 Aligned_cols=71 Identities=23% Similarity=0.285 Sum_probs=53.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhh--CCCCCceEEEEc----CEE--cCCCCCccccccccccceEEEEE
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFA----GKQ--LEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~--gi~~~~q~L~~~----g~~--L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
|-+.+|+.+|.. .+++.++++.+-|-.++-+-+ +..|+...+.-+ |.. +..++++.++|+.+|..+++...
T Consensus 1 Mi~rfRsk~G~~-Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~ys 79 (571)
T COG5100 1 MIFRFRSKEGQR-RVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEYS 79 (571)
T ss_pred CeEEEecCCCce-eeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEec
Confidence 678888887654 689999999999988887765 345555565543 332 34678999999999999999884
No 192
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=83.24 E-value=6.8 Score=23.65 Aligned_cols=55 Identities=24% Similarity=0.270 Sum_probs=40.4
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCC-ceEEE-Ec-----CEEcCCCCCcc
Q 032747 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI-FA-----GKQLEDGRTLA 57 (134)
Q Consensus 3 i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~-~q~L~-~~-----g~~L~d~~~L~ 57 (134)
|.|-..+|....+.|+..+|++++-+.+..+.+.... ...|+ +. .+.++|...+.
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vv 66 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVV 66 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHH
Confidence 5677789999999999999999999999999887654 34443 11 24456665433
No 193
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=82.66 E-value=1.7 Score=28.07 Aligned_cols=58 Identities=17% Similarity=0.269 Sum_probs=40.8
Q ss_pred EEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCcccccc---ccccceEEEEE
Q 032747 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI---QKESTLHLVLR 72 (134)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i---~~~~~i~l~~~ 72 (134)
+-|+.+.||+++...|.++.+++++..-|..++..+....++++.-- .++.-+++...
T Consensus 45 llVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~lYe~~KDeDGFLYi~Ys 105 (121)
T PTZ00380 45 LALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDIADACKRDDGFLYVSVR 105 (121)
T ss_pred EEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHHHHHhcCCCCeEEEEEc
Confidence 36899999999999999999999988555566755566667766421 22334555544
No 194
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=82.54 E-value=5.2 Score=23.89 Aligned_cols=37 Identities=8% Similarity=0.165 Sum_probs=30.2
Q ss_pred CCcEEEEEeccCCcHHHHHHHhhhhcCCCC-CcceEEe
Q 032747 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPP-VQQRYPI 121 (134)
Q Consensus 85 ~~~~~~~~V~~~~tV~~lK~~i~~~~gip~-~~q~L~~ 121 (134)
++..+.+.+.++.+..+|++.|+++.++.. ....|-|
T Consensus 8 ~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY 45 (82)
T cd06407 8 GEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKY 45 (82)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEE
Confidence 456888999999999999999999999865 4555544
No 195
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=82.33 E-value=6.3 Score=23.28 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=30.0
Q ss_pred CCcEEEEEeccCCcHHHHHHHhhhhcCCC--CCcceEE
Q 032747 85 TGKEIEIDIEPTDTIERIKERVEEKEGIP--PVQQRYP 120 (134)
Q Consensus 85 ~~~~~~~~V~~~~tV~~lK~~i~~~~gip--~~~q~L~ 120 (134)
.+...++.|.+++|..++-.++.++.|+. +.+..|+
T Consensus 11 ~~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 11 GGTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred CccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 36678899999999999999999999987 4555554
No 196
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=82.20 E-value=4.1 Score=24.58 Aligned_cols=57 Identities=16% Similarity=0.250 Sum_probs=30.5
Q ss_pred EEEc-CCCcHHHHHHHHHh-hhCCCCC----ceEEEEcCEE----cCCCCCccccccccccceEEEE
Q 032747 15 LEVE-SSDTIDNVKAKIQD-KEGIPPD----QQRLIFAGKQ----LEDGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 15 ~~v~-~~~tv~~lK~~i~~-~~gi~~~----~q~L~~~g~~----L~d~~~L~~~~i~~~~~i~l~~ 71 (134)
+.++ ..+|+.+|-+.|-+ +.|+..- .-+++|.... -..+++|+++|+.+|+.+.+.-
T Consensus 2 v~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~D 68 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVDD 68 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEEE
T ss_pred EEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEEE
Confidence 3444 46799999998755 5665432 2344444322 2235789999999999887643
No 197
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=81.72 E-value=7.3 Score=22.86 Aligned_cols=34 Identities=18% Similarity=0.389 Sum_probs=29.0
Q ss_pred eeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcC
Q 032747 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEG 111 (134)
Q Consensus 78 ~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~g 111 (134)
.|.|+.++|..+.-..+.++|+++|..-++...+
T Consensus 6 ~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~ 39 (79)
T cd01772 6 RIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTG 39 (79)
T ss_pred EEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCC
Confidence 4677888888888899999999999999986554
No 198
>PRK07440 hypothetical protein; Provisional
Probab=81.66 E-value=7.8 Score=22.26 Aligned_cols=57 Identities=18% Similarity=0.290 Sum_probs=39.0
Q ss_pred CCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEE
Q 032747 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
+|+. .++....|+.+|-+ ..++++...-+.++|+.+.. ..-.+.-+++|+.|.+.--
T Consensus 10 NG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r-~~w~~~~L~~gD~IEIv~~ 66 (70)
T PRK07440 10 NGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHR-QFWEQTQVQPGDRLEIVTI 66 (70)
T ss_pred CCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEEE
Confidence 5555 45567889988775 44667777788899998852 2234455778999887543
No 199
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.19 E-value=2.3 Score=32.17 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=44.1
Q ss_pred EEEcCCCcHHHHHHHHHhhhCCCCCceEEEEc---CEE-----cCCCCCccccccccccceEEE
Q 032747 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQ-----LEDGRTLADYNIQKESTLHLV 70 (134)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~---g~~-----L~d~~~L~~~~i~~~~~i~l~ 70 (134)
.-+.-.-||.|++..+....|+.+.+++|++- |+. .+.++.|-.|.|++|+.+.+.
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred eEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 44566789999999999999999999999874 432 344567888889999887653
No 200
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=81.13 E-value=0.79 Score=34.75 Aligned_cols=49 Identities=35% Similarity=0.575 Sum_probs=42.5
Q ss_pred CCCCEEEEEEc-CCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCc
Q 032747 8 LTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56 (134)
Q Consensus 8 ~~g~~~~~~v~-~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L 56 (134)
.+|+...+.+. .+..+..+|.++....+++++.|.+.+.|..|.|..++
T Consensus 290 ~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 290 ADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 46777777777 77889999999999999999999999999999887544
No 201
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=80.90 E-value=1.7 Score=30.72 Aligned_cols=29 Identities=21% Similarity=0.460 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhhhCCCC
Q 032747 10 GKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (134)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~ 38 (134)
|-.|.+.|.+++|..++|++|++++|++.
T Consensus 132 GiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ 160 (213)
T PF14533_consen 132 GIPFLFVVKPGETFSDTKERLQKRLGVSD 160 (213)
T ss_dssp EEEEEEEEETT--HHHHHHHHHHHH---H
T ss_pred CCCEEEEeeCCCcHHHHHHHHHHHhCCCh
Confidence 55688899999999999999999999986
No 202
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=80.87 E-value=5.9 Score=23.39 Aligned_cols=42 Identities=12% Similarity=0.233 Sum_probs=36.2
Q ss_pred eeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeC
Q 032747 81 VKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQ 122 (134)
Q Consensus 81 v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~ 122 (134)
|-.++|+..++.|.+..|+.++-+-.+.+.|+.|+.-.|...
T Consensus 4 V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk 45 (77)
T cd01818 4 VCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLK 45 (77)
T ss_pred EECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEEE
Confidence 445788899999999999999999999999999987766543
No 203
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=80.68 E-value=9.2 Score=22.42 Aligned_cols=59 Identities=20% Similarity=0.256 Sum_probs=46.5
Q ss_pred EEEcCCCcHHHHHHHHHhhhCCCCCceEEEEc-CEEcCCCCCccccccccccceEEEEEe
Q 032747 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADYNIQKESTLHLVLRL 73 (134)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~-g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (134)
+.|..++....+-+--++++++|+..--++.+ |.-+....+.+..=++.|+.+.+..|.
T Consensus 20 lsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRD 79 (82)
T cd01766 20 LSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRD 79 (82)
T ss_pred EeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeecccc
Confidence 57778887777777788899999877777655 666788888888888899988876553
No 204
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=80.49 E-value=9.1 Score=22.26 Aligned_cols=33 Identities=12% Similarity=0.262 Sum_probs=28.4
Q ss_pred EEEeccCCcHHHHHHHhhhhcCCCCCcceEEeC
Q 032747 90 EIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQ 122 (134)
Q Consensus 90 ~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~ 122 (134)
.+.+.++.+..+|+.+|++..+.+.....+.|.
T Consensus 15 ~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~ 47 (84)
T PF00564_consen 15 IISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK 47 (84)
T ss_dssp EEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee
Confidence 378888889999999999999999777777764
No 205
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=80.04 E-value=10 Score=22.47 Aligned_cols=43 Identities=16% Similarity=0.243 Sum_probs=35.4
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYP 120 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~ 120 (134)
..+.++.++|....-+...++++++|-.=+.. .|.++..+.|+
T Consensus 5 ~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~-~~~~~~~f~L~ 47 (80)
T cd01771 5 SKLRVRTPSGDFLERRFLGDTPLQVLLNFVAS-KGYPIDEYKLL 47 (80)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEe
Confidence 35677888899999999999999999999876 47777777775
No 206
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=79.96 E-value=11 Score=22.95 Aligned_cols=44 Identities=16% Similarity=0.302 Sum_probs=32.8
Q ss_pred EEEEeCCCCEEEEEEcC-----CCcHHHHHHHHHhhhCCCC-CceEEEEcC
Q 032747 3 IFVKTLTGKTITLEVES-----SDTIDNVKAKIQDKEGIPP-DQQRLIFAG 47 (134)
Q Consensus 3 i~v~~~~g~~~~~~v~~-----~~tv~~lK~~i~~~~gi~~-~~q~L~~~g 47 (134)
|++.. +|....+.++. +.+..+|+++|++.+++++ ....|.|..
T Consensus 3 vKv~y-~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~D 52 (91)
T cd06398 3 VKVKY-GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTD 52 (91)
T ss_pred EEEEe-CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEEC
Confidence 44433 45556677774 7899999999999999987 566777763
No 207
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=78.32 E-value=0.9 Score=34.31 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=36.3
Q ss_pred eeeeecCC--cEEEEEeccCCcHHHHHHHhhhhcC--CCCCcceEEeCCeEEEEE
Q 032747 79 IKVKTLTG--KEIEIDIEPTDTIERIKERVEEKEG--IPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 79 i~v~~~~~--~~~~~~V~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~g~~l~~~ 129 (134)
++++..+. +..++..+..-||++||.-+....- --...|||+|.|++|.++
T Consensus 12 lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~ 66 (391)
T KOG4583|consen 12 LLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDH 66 (391)
T ss_pred EEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccc
Confidence 34555553 4555556667799999999886554 223489999999999875
No 208
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=78.29 E-value=8.8 Score=22.47 Aligned_cols=60 Identities=17% Similarity=0.328 Sum_probs=35.2
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhhhC-CCCCceEEEE------cCEEcCCCCCccccccccccceEEEE
Q 032747 11 KTITLEVESSDTIDNVKAKIQDKEG-IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~g-i~~~~q~L~~------~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (134)
+.|-.-..++.|+.+|++.|.+++. ..|....+.. .|-.|+.+-.+++.= ..++++.+.+
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~kLYP~~~~~~I~~LQD~~~cDLD~d~~V~DVf-~~~~~vrvi~ 69 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFKKLYPNEPELEILSLQDSDGCDLDPDFLVKDVF-NSNNVVRVIL 69 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHHCCCCCCceEEEeecCCCCCCCcccEeeeee-ccCCEEEEEe
Confidence 4566667899999999999999874 3333323321 133455455555532 2455555444
No 209
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=78.01 E-value=8.5 Score=23.38 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=33.2
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEE-EEcCEEc
Q 032747 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGKQL 50 (134)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L-~~~g~~L 50 (134)
..+.+.|++++|=.++|+.+++.+|+++...+- .+.|+.-
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~k 61 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKK 61 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCce
Confidence 578999999999999999999999999866544 4667643
No 210
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=76.80 E-value=13 Score=22.10 Aligned_cols=53 Identities=19% Similarity=0.386 Sum_probs=39.0
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEE-EcCEEcCCCCCccccccccccceEEEE
Q 032747 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (134)
+..+...+++..||.++-+ ..|+|.....++ .||+..+-+ |-+++|+.|.+.-
T Consensus 22 ~~~~~~~~~~~~tvkd~IE----sLGVP~tEV~~i~vNG~~v~~~-----~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIE----SLGVPHTEVGLILVNGRPVDFD-----YRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHHH----HcCCChHHeEEEEECCEECCCc-----ccCCCCCEEEEEe
Confidence 3567788889999988765 569998877555 688887533 5667788887753
No 211
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=76.31 E-value=6.4 Score=33.56 Aligned_cols=62 Identities=18% Similarity=0.385 Sum_probs=47.6
Q ss_pred CCCEEEEEEcC-CCcHHHHHHHHHhhhCCCCCceEEEEc-CEEcCCCCCcccccc--ccccceEEE
Q 032747 9 TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADYNI--QKESTLHLV 70 (134)
Q Consensus 9 ~g~~~~~~v~~-~~tv~~lK~~i~~~~gi~~~~q~L~~~-g~~L~d~~~L~~~~i--~~~~~i~l~ 70 (134)
.|+.+.++... ..|+.+||.+|.++.|....+|.++-+ |..++.++.|..|.- .+.+.|++.
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffF 68 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFF 68 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEe
Confidence 47778888774 568999999999999999999998865 566777888887762 333456554
No 212
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=75.89 E-value=14 Score=21.84 Aligned_cols=38 Identities=5% Similarity=0.158 Sum_probs=33.2
Q ss_pred EEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCce
Q 032747 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 41 (134)
Q Consensus 4 ~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q 41 (134)
.|-.++|+...+.+.|++|+.++-+...+..+..|+.-
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh 40 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEH 40 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHh
Confidence 35678999999999999999999999999999988643
No 213
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=75.84 E-value=11 Score=22.41 Aligned_cols=39 Identities=21% Similarity=0.460 Sum_probs=30.6
Q ss_pred CcHHHHHHHHHhhhCCCCCceEEEE--cCEEcCCCCCcccc
Q 032747 21 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADY 59 (134)
Q Consensus 21 ~tv~~lK~~i~~~~gi~~~~q~L~~--~g~~L~d~~~L~~~ 59 (134)
.|..+|+.+..+.++++....+|.. +|..++|+.-...+
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~tL 61 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQTL 61 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCCS
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhhC
Confidence 6899999999999999987777776 58888877555543
No 214
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=75.73 E-value=14 Score=21.71 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=20.4
Q ss_pred EeCCCCE-EEEEEc-CCCcHHHHHHHHHhhhCC
Q 032747 6 KTLTGKT-ITLEVE-SSDTIDNVKAKIQDKEGI 36 (134)
Q Consensus 6 ~~~~g~~-~~~~v~-~~~tv~~lK~~i~~~~gi 36 (134)
|....+. -.+.++ ...+|.+||..|....+.
T Consensus 4 KFkS~k~~~~i~fdG~~Isv~dLKr~I~~~~~l 36 (74)
T PF08783_consen 4 KFKSQKDYDTITFDGTSISVFDLKREIIEKKKL 36 (74)
T ss_dssp EETT-SSEEEEEESSSEEEHHHHHHHHHHHHT-
T ss_pred EecccCCccEEEECCCeeEHHHHHHHHHHHhCC
Confidence 3444333 356777 467999999999887665
No 215
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=75.64 E-value=14 Score=23.48 Aligned_cols=38 Identities=5% Similarity=0.198 Sum_probs=32.4
Q ss_pred EEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEc
Q 032747 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50 (134)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L 50 (134)
-.+.|++++|++.+-..+.+..+++++++-++|-..-.
T Consensus 47 ~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 47 SKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSF 84 (116)
T ss_pred ceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCcc
Confidence 34789999999999999999999999999888765443
No 216
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=75.64 E-value=11 Score=22.72 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=30.9
Q ss_pred eeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCC
Q 032747 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPV 115 (134)
Q Consensus 79 i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~ 115 (134)
+.|-..+|.+.++.|+...|+.++-.++.++.+...+
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~ 41 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDD 41 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCC
Confidence 3455678999999999999999999999998885443
No 217
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=75.54 E-value=14 Score=21.73 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=27.3
Q ss_pred EEEEEeccCCcHHHHHHHhhhhcCC--CCCcceE
Q 032747 88 EIEIDIEPTDTIERIKERVEEKEGI--PPVQQRY 119 (134)
Q Consensus 88 ~~~~~V~~~~tV~~lK~~i~~~~gi--p~~~q~L 119 (134)
..++.|.+++|+.++-.++.++.|+ .+....|
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L 51 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCL 51 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEE
Confidence 7889999999999999999999998 4445555
No 218
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=75.12 E-value=9.7 Score=21.96 Aligned_cols=37 Identities=16% Similarity=0.277 Sum_probs=29.6
Q ss_pred CcEEEEEec-cCCcHHHHHHHhhhhcCCCCCcceEEeC
Q 032747 86 GKEIEIDIE-PTDTIERIKERVEEKEGIPPVQQRYPIQ 122 (134)
Q Consensus 86 ~~~~~~~V~-~~~tV~~lK~~i~~~~gip~~~q~L~~~ 122 (134)
|....+.+. .+.+..+|+.+|++..+++.....+.|.
T Consensus 9 ~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~ 46 (81)
T cd05992 9 GEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYP 46 (81)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEee
Confidence 456777787 8889999999999999988655556554
No 219
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=74.56 E-value=15 Score=21.50 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=42.7
Q ss_pred EEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEc-CEEcCCCCCccccccccccceEE
Q 032747 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADYNIQKESTLHL 69 (134)
Q Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~-g~~L~d~~~L~~~~i~~~~~i~l 69 (134)
.+.|+.++....+-+--++++.+|+..--++.+ |.-....++.++.-++.|+.+.+
T Consensus 19 v~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrl 75 (76)
T PF03671_consen 19 VISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRL 75 (76)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEE
T ss_pred EEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeee
Confidence 368888888888877888899999987777765 77788889999988888988765
No 220
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=74.16 E-value=15 Score=23.36 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=37.2
Q ss_pred ceEEEEEeecceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEe
Q 032747 66 TLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPI 121 (134)
Q Consensus 66 ~i~l~~~~~~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~ 121 (134)
.|.+.++..|+.++. +.....|++++|++.+-.-|....+++...+-+.|
T Consensus 30 kV~i~l~aiG~~Pil------K~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflY 79 (116)
T KOG3439|consen 30 KVQIRLRAIGDAPIL------KKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLY 79 (116)
T ss_pred eEEEEEeccCCCcce------ecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEE
Confidence 355555555555442 34557789999999999999999999998887765
No 221
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=73.73 E-value=12 Score=22.07 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=29.2
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEE
Q 032747 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (134)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L 43 (134)
..+.+.|++++|=.++|+.++..+++.+...+-
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt 47 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNT 47 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEe
Confidence 578999999999999999999999998865544
No 222
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=73.29 E-value=18 Score=22.09 Aligned_cols=50 Identities=18% Similarity=0.261 Sum_probs=42.1
Q ss_pred eeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEE
Q 032747 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILF 127 (134)
Q Consensus 78 ~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~ 127 (134)
.+.|...++.++-++|..+.|...|-...+.+.|-..+..|+.|.|+-++
T Consensus 26 nLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~ 75 (103)
T COG5227 26 NLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRID 75 (103)
T ss_pred ceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecC
Confidence 33444566788889999999999999999999999999999999998654
No 223
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=73.04 E-value=12 Score=30.45 Aligned_cols=64 Identities=36% Similarity=0.532 Sum_probs=41.2
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhhh--CCC------CCceEEEE--c--CE-EcCCC-------------CCccccccccc
Q 032747 11 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF--A--GK-QLEDG-------------RTLADYNIQKE 64 (134)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~--gi~------~~~q~L~~--~--g~-~L~d~-------------~~L~~~~i~~~ 64 (134)
..+.+.|-.-+||.++|++|-... +.| +++.-|.+ + |+ .|.|. +||+.|++.+|
T Consensus 202 ~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 281 (539)
T PF08337_consen 202 EEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPDG 281 (539)
T ss_dssp TCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--TT
T ss_pred ceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCCC
Confidence 557889999999999999997653 333 23444432 2 22 34432 46899999999
Q ss_pred cceEEEEEee
Q 032747 65 STLHLVLRLR 74 (134)
Q Consensus 65 ~~i~l~~~~~ 74 (134)
+++.+..+..
T Consensus 282 a~vaLv~k~~ 291 (539)
T PF08337_consen 282 ATVALVPKQH 291 (539)
T ss_dssp EEEEEEES--
T ss_pred ceEEEeeccc
Confidence 9999887753
No 224
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=72.90 E-value=11 Score=23.08 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=32.8
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEE-EEcCEE
Q 032747 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGKQ 49 (134)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L-~~~g~~ 49 (134)
...+.+.|++.+|=.++|+.++..+++++...+- ...|+.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~ 60 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKT 60 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCce
Confidence 4678999999999999999999999999876544 355543
No 225
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=72.46 E-value=22 Score=26.96 Aligned_cols=67 Identities=19% Similarity=0.292 Sum_probs=45.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecce
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 77 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 77 (134)
|+|+| +|+. +++..+.|+.+|-+. .+++++..-+.+||+.+..+ .-.++-+++|+.|.+.--..||.
T Consensus 1 M~I~V---NGk~--~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr~-~w~~t~LkeGD~IEII~~VgGGs 67 (326)
T PRK11840 1 MRIRL---NGEP--RQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVPRS-EYGQVALEEGDELEIVHFVGGGS 67 (326)
T ss_pred CEEEE---CCEE--EecCCCCcHHHHHHH----cCCCCCeEEEEECCEECCHH-HcCccccCCCCEEEEEEEecCCC
Confidence 45555 5555 445678888887754 47788888888999988522 33455578899998865554443
No 226
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=72.32 E-value=17 Score=21.32 Aligned_cols=41 Identities=29% Similarity=0.280 Sum_probs=31.5
Q ss_pred EEEEeCCCC----EEEEEEcCCCcHHHHHHHHHhhhCCC--CCceEE
Q 032747 3 IFVKTLTGK----TITLEVESSDTIDNVKAKIQDKEGIP--PDQQRL 43 (134)
Q Consensus 3 i~v~~~~g~----~~~~~v~~~~tv~~lK~~i~~~~gi~--~~~q~L 43 (134)
|.|-..++. .-.+.|++++|+.++-+.+.++++++ +..-.|
T Consensus 5 lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L 51 (93)
T PF00788_consen 5 LRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCL 51 (93)
T ss_dssp EEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEE
T ss_pred EEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEE
Confidence 344445555 67899999999999999999999983 344556
No 227
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=72.07 E-value=19 Score=21.87 Aligned_cols=40 Identities=23% Similarity=0.290 Sum_probs=35.4
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCce
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 41 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q 41 (134)
.+.|-.++|....+.+..+++..++-+.+.++.|+|.+-.
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~ 42 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQ 42 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHH
Confidence 5677778999999999999999999999999999997543
No 228
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=71.74 E-value=18 Score=21.39 Aligned_cols=36 Identities=11% Similarity=0.092 Sum_probs=29.9
Q ss_pred CCcEEEEEeccCCcHHHHHHHhhhhcCCCC--CcceEE
Q 032747 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPP--VQQRYP 120 (134)
Q Consensus 85 ~~~~~~~~V~~~~tV~~lK~~i~~~~gip~--~~q~L~ 120 (134)
++...++.|.+++|+.++-.++.++.+++. ....|+
T Consensus 14 ~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~ 51 (90)
T smart00314 14 GGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLV 51 (90)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEE
Confidence 466888999999999999999999999875 345554
No 229
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=70.97 E-value=20 Score=22.15 Aligned_cols=40 Identities=10% Similarity=0.190 Sum_probs=31.8
Q ss_pred eeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEe
Q 032747 81 VKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPI 121 (134)
Q Consensus 81 v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~ 121 (134)
++-..|.+.-+.|+.+.+-.+|+.++.+..+++.. ..+-|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 34456788889999999999999999999998875 44444
No 230
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=70.80 E-value=16 Score=21.46 Aligned_cols=47 Identities=17% Similarity=0.386 Sum_probs=33.6
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEE--cCEEcCCCCCcccc
Q 032747 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADY 59 (134)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~--~g~~L~d~~~L~~~ 59 (134)
.....|. ..|..+|+.+....++++...-+|.. +|..++|+.-...+
T Consensus 11 ~~k~GV~-A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~tL 59 (74)
T smart00266 11 NVRKGVA-ASSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQTL 59 (74)
T ss_pred CeeEEEE-cCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhcC
Confidence 3334433 35799999999999999866666654 69999887655554
No 231
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.58 E-value=2.9 Score=32.99 Aligned_cols=59 Identities=24% Similarity=0.264 Sum_probs=49.9
Q ss_pred EEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEE
Q 032747 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
.++.+...|-.+|...|++.+|++.+..+.+.+|+.|.-.++|.+-|++......+.+.
T Consensus 53 l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~~ 111 (568)
T KOG2561|consen 53 LKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAVG 111 (568)
T ss_pred hhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHhc
Confidence 35566677889999999999999999999999999999999999999987766554443
No 232
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=69.77 E-value=13 Score=31.37 Aligned_cols=93 Identities=19% Similarity=0.280 Sum_probs=60.0
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEE----cCEEc--CCCCCccccccccccceEEEEEe---ecceeeeee
Q 032747 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF----AGKQL--EDGRTLADYNIQKESTLHLVLRL---RGGTMIKVK 82 (134)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~----~g~~L--~d~~~L~~~~i~~~~~i~l~~~~---~~~~~i~v~ 82 (134)
.+.+.|+...++..+|++|++..+++.+..++.- +|..+ .++.+|+.+- ++.+|.+.+-. ++...+.|-
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~~--~~~~iTI~LG~~Lk~dE~~~KI~ 955 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGAF--QSCFITIKLGAPLKSDEKMMKII 955 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhhc--ccceEEEEecCcCCCCceeeEEE
Confidence 4678899999999999999999999998887762 24444 4667787653 45555544321 333333332
Q ss_pred ec---C---C--c-EEEEEeccCCcHHHHHHHh
Q 032747 83 TL---T---G--K-EIEIDIEPTDTIERIKERV 106 (134)
Q Consensus 83 ~~---~---~--~-~~~~~V~~~~tV~~lK~~i 106 (134)
.+ . . + -+..-++.+.|+++.|..+
T Consensus 956 ~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~EL 988 (1203)
T KOG4598|consen 956 LLDILENERENWKPLFELVVSQSTTIGQVKLEL 988 (1203)
T ss_pred eehhhhccccCCcchhhhhhcCcccHHHHHHHH
Confidence 22 1 1 1 2334467888998877543
No 233
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=69.49 E-value=17 Score=21.60 Aligned_cols=40 Identities=15% Similarity=0.391 Sum_probs=30.5
Q ss_pred CCcHHHHHHHHHhhhCCCCCceEEEE--cCEEcCCCCCcccc
Q 032747 20 SDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADY 59 (134)
Q Consensus 20 ~~tv~~lK~~i~~~~gi~~~~q~L~~--~g~~L~d~~~L~~~ 59 (134)
..|..+|+.+..+.++++....+|.. +|..++|+.-...+
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~tL 61 (78)
T cd01615 20 ASSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQTL 61 (78)
T ss_pred cCCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhcC
Confidence 35799999999999999765665654 58999877655554
No 234
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=69.42 E-value=8.9 Score=30.15 Aligned_cols=72 Identities=14% Similarity=0.284 Sum_probs=56.3
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEE--EcCEEcCC---CCCccccccccccceEEEEEe
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHLVLRL 73 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~--~~g~~L~d---~~~L~~~~i~~~~~i~l~~~~ 73 (134)
+|.|+.++|..|.-.++.++-+..+++.+.+.-++......|- |-.+..-+ .++|.++.+.+...+.|..+.
T Consensus 316 rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk~ 392 (506)
T KOG2507|consen 316 RLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPKK 392 (506)
T ss_pred EEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEecC
Confidence 6889999999999999999999999999998777776666664 44555532 468999999888877766553
No 235
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=69.19 E-value=15 Score=22.56 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=29.6
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEE
Q 032747 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (134)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L 43 (134)
...+.+.|++++|=.++|+.+++.+|+-+..-+.
T Consensus 21 ~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNT 54 (94)
T COG0089 21 ENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNT 54 (94)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEE
Confidence 3578999999999999999999999988866544
No 236
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=69.05 E-value=13 Score=23.62 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=33.0
Q ss_pred EEEcCCCcHHHHHHHHHhhhCCCCCce-EEEEcCEEcCCCCCcccc
Q 032747 15 LEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADY 59 (134)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gi~~~~q-~L~~~g~~L~d~~~L~~~ 59 (134)
+-|+.+.||+++...|.+...+.++.- -|..++.....+.+++++
T Consensus 45 flVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~l 90 (112)
T cd01611 45 YLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQL 90 (112)
T ss_pred EEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHH
Confidence 458999999999999999999887653 444556444555666654
No 237
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=69.04 E-value=18 Score=21.71 Aligned_cols=34 Identities=12% Similarity=0.246 Sum_probs=29.8
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEE
Q 032747 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (134)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~ 44 (134)
..+.+.|++..+=.++|+.|+..+|+.+..-+-.
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~ 55 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTL 55 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 5789999999999999999999999988665443
No 238
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=68.52 E-value=12 Score=26.23 Aligned_cols=43 Identities=28% Similarity=0.335 Sum_probs=31.2
Q ss_pred cccceEEEEEeecceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcC
Q 032747 63 KESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEG 111 (134)
Q Consensus 63 ~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~g 111 (134)
.|+|+|++-...++-++...- .+.|.+.||.+.|.++|++.+-
T Consensus 132 sG~TVH~V~e~vD~GpII~Q~------~Vpv~~~Dt~etl~~RV~~~Eh 174 (200)
T COG0299 132 SGCTVHFVTEGVDTGPIIAQA------AVPVLPGDTAETLEARVLEQEH 174 (200)
T ss_pred cCcEEEEEccCCCCCCeEEEE------eeeecCCCCHHHHHHHHHHHHH
Confidence 688898876654444554322 4677889999999999997664
No 239
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=67.68 E-value=13 Score=23.29 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=27.8
Q ss_pred eeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCC
Q 032747 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPP 114 (134)
Q Consensus 79 i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~ 114 (134)
+++-..+|++.+++|..-.+..+++.++-.+.|++-
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 456678899999999999999999999999999887
No 240
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=67.39 E-value=6.2 Score=24.43 Aligned_cols=30 Identities=40% Similarity=0.761 Sum_probs=21.4
Q ss_pred EEEEcCEEcCCCCCccccccccc--cceEEEEE
Q 032747 42 RLIFAGKQLEDGRTLADYNIQKE--STLHLVLR 72 (134)
Q Consensus 42 ~L~~~g~~L~d~~~L~~~~i~~~--~~i~l~~~ 72 (134)
.|.|.|+.|.+..+|++| +..+ +.|.+-+.
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEKtKiivKl~ 34 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEKTKIIVKLQ 34 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcceeEEEEec
Confidence 478999999999999999 4333 34444443
No 241
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=66.90 E-value=2.3 Score=32.32 Aligned_cols=47 Identities=19% Similarity=0.354 Sum_probs=41.1
Q ss_pred ecCCcEEEEEec-cCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 83 TLTGKEIEIDIE-PTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 83 ~~~~~~~~~~V~-~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
..+|+.....+. .++.+..||.++....+|++..|.+.+.|..+.+.
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~ 336 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDN 336 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCcc
Confidence 456888888777 68899999999999999999999999999988664
No 242
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=66.85 E-value=23 Score=25.58 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=27.8
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEE
Q 032747 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (134)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~ 44 (134)
+..|.+.++..+|-.+|-++|+++.++.|...+|.
T Consensus 189 ~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 189 DPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp ---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 35789999999999999999999999999999887
No 243
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=66.73 E-value=25 Score=21.00 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=25.6
Q ss_pred cCCcEEEEEecc--CCcHHHHHHHhhhhcCCC
Q 032747 84 LTGKEIEIDIEP--TDTIERIKERVEEKEGIP 113 (134)
Q Consensus 84 ~~~~~~~~~V~~--~~tV~~lK~~i~~~~gip 113 (134)
..|.+..+.+.+ +-+-.+|++.+..+.+++
T Consensus 7 y~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 7 YNGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred ECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 346678888888 669999999999999998
No 244
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=66.23 E-value=21 Score=22.35 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=38.1
Q ss_pred EEEcCCCcHHHHHHHHHhhhCCCCCc-eEEEEcCEEcCCCCCcccccc---ccccceEEEEE
Q 032747 15 LEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADYNI---QKESTLHLVLR 72 (134)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gi~~~~-q~L~~~g~~L~d~~~L~~~~i---~~~~~i~l~~~ 72 (134)
+-|+.+.||+++...|.+...++++. .-|+.++.....+.++++.-- .++.-+++...
T Consensus 37 fLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~elY~~~kdeDGFLY~~Ys 98 (104)
T PF02991_consen 37 FLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGELYEKYKDEDGFLYMTYS 98 (104)
T ss_dssp EEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHHHHHHHB-TTSSEEEEEE
T ss_pred EEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHHHHHHhCCCCCeEEEEec
Confidence 45789999999999999999987753 445566755667777776521 23344555443
No 245
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=65.41 E-value=31 Score=21.56 Aligned_cols=62 Identities=29% Similarity=0.351 Sum_probs=42.6
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhhh----C--CCCC-ceEEEEcCEE--cCCCCCccccc-----cccccceEEEEE
Q 032747 11 KTITLEVESSDTIDNVKAKIQDKE----G--IPPD-QQRLIFAGKQ--LEDGRTLADYN-----IQKESTLHLVLR 72 (134)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~----g--i~~~-~q~L~~~g~~--L~d~~~L~~~~-----i~~~~~i~l~~~ 72 (134)
..+.+.+++++|+.++.+.+-++. + -+++ +-.|...|+. |..+..|.+|. ++.|..+++.+.
T Consensus 29 ~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~~L~L~ 104 (108)
T smart00144 29 QTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREPHLVLM 104 (108)
T ss_pred eeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCceEEEE
Confidence 558899999999999998887752 1 1222 4556666743 66777777774 466777777654
No 246
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=65.30 E-value=28 Score=21.02 Aligned_cols=59 Identities=24% Similarity=0.391 Sum_probs=41.8
Q ss_pred EEEEEcCCCcHHHHHHHHHhhh-C--CCC---CceEEEEcC--EEcCCCCCccccccccccceEEEE
Q 032747 13 ITLEVESSDTIDNVKAKIQDKE-G--IPP---DQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~-g--i~~---~~q~L~~~g--~~L~d~~~L~~~~i~~~~~i~l~~ 71 (134)
..+.|+.++|+.++-++++.+. | +++ ...++..+| +.+..+.++++-|+.+-..|.+..
T Consensus 17 ~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~ 83 (85)
T PF06234_consen 17 QLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRF 83 (85)
T ss_dssp EEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEE
Confidence 4478999999999999998864 3 332 245677888 889999999999999988887754
No 247
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=64.95 E-value=26 Score=20.54 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=28.3
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhhhCCC--CCceEEE
Q 032747 10 GKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLI 44 (134)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~--~~~q~L~ 44 (134)
+....+.|+.++|..++-+.+.+++++. ++.-.|.
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 5567899999999999999999999987 3444444
No 248
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=64.76 E-value=21 Score=21.20 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=30.2
Q ss_pred CCcHHHHHHHHHhhhCCCCCceEEE--EcCEEcCCCCCcccc
Q 032747 20 SDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADY 59 (134)
Q Consensus 20 ~~tv~~lK~~i~~~~gi~~~~q~L~--~~g~~L~d~~~L~~~ 59 (134)
..|..+|+.+....++++...-+|. -+|..++|+.-...+
T Consensus 20 A~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~L 61 (78)
T cd06539 20 ASSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQTL 61 (78)
T ss_pred ecCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhhC
Confidence 3579999999999999986555554 568999877655554
No 249
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=63.81 E-value=32 Score=21.27 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=29.0
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCC
Q 032747 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (134)
Q Consensus 3 i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~ 38 (134)
|.|=-.++.-.++.++.++||.++-..+.+++.++.
T Consensus 5 IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~ 40 (97)
T cd01775 5 IRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPS 40 (97)
T ss_pred EEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCC
Confidence 334344666678999999999999999999998776
No 250
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=62.56 E-value=34 Score=21.07 Aligned_cols=70 Identities=23% Similarity=0.408 Sum_probs=42.7
Q ss_pred EEEEEeC-CCCEEEEEEcCCCcHHHHHHHHHhh--hCCCC---C-ceEEEEcCE--EcCCCCCccccc-----cccccce
Q 032747 2 QIFVKTL-TGKTITLEVESSDTIDNVKAKIQDK--EGIPP---D-QQRLIFAGK--QLEDGRTLADYN-----IQKESTL 67 (134)
Q Consensus 2 ~i~v~~~-~g~~~~~~v~~~~tv~~lK~~i~~~--~gi~~---~-~q~L~~~g~--~L~d~~~L~~~~-----i~~~~~i 67 (134)
.|.|... ++..+.+.++.+.|+.+|-+.+... .+..+ . +-.|...|+ -|..+..|.+|. +..+..+
T Consensus 18 ~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~~~ 97 (106)
T PF00794_consen 18 KVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGKDP 97 (106)
T ss_dssp EEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT--E
T ss_pred EEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCCCc
Confidence 4556666 4566889999999999999888776 12222 2 456666664 366788888885 3455555
Q ss_pred EEEE
Q 032747 68 HLVL 71 (134)
Q Consensus 68 ~l~~ 71 (134)
++.+
T Consensus 98 ~L~L 101 (106)
T PF00794_consen 98 HLVL 101 (106)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
No 251
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=61.64 E-value=30 Score=20.23 Aligned_cols=47 Identities=23% Similarity=0.345 Sum_probs=38.8
Q ss_pred EEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcC--EEcC
Q 032747 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLE 51 (134)
Q Consensus 5 v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g--~~L~ 51 (134)
|-.+||+.-.+.+.|+.||.++-.+.-++.|+.++.-.++.-| ++++
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~~k~l~ 52 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGGDKPLV 52 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecCCcccc
Confidence 4467888889999999999999999999999998877776554 4554
No 252
>PF04023 FeoA: FeoA domain; InterPro: IPR007167 This entry represents the core domain of the ferrous iron (Fe2+) transport protein FeoA found in bacteria. This domain also occurs at the C terminus in related proteins. The transporter Feo is composed of three proteins: FeoA a small, soluble SH3-domain protein probably located in the cytosol; FeoB, a large protein with a cytosolic N-terminal G-protein domain and a C-terminal integral inner-membrane domain containing two 'Gate' motifs which likely functions as the Fe2+ permease; and FeoC, a small protein apparently functioning as an [Fe-S]-dependent transcriptional repressor [, ]. Feo allows the bacterial cell to acquire iron from its environment. ; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 1G3T_A 1C0W_B 1BI3_A 1QVP_A 1BI1_A 1BYM_A 2QQB_A ....
Probab=61.37 E-value=18 Score=20.49 Aligned_cols=37 Identities=24% Similarity=0.353 Sum_probs=25.5
Q ss_pred CCccccccccccceEEEEEeecceeeeeeecCCcEEEE
Q 032747 54 RTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEI 91 (134)
Q Consensus 54 ~~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~ 91 (134)
..|.++|+.+|+.+.+.-+.+.+-++.+... ++.+.+
T Consensus 26 ~~L~~lGl~~G~~i~v~~~~~~~~~~~i~~~-~~~i~L 62 (74)
T PF04023_consen 26 RRLADLGLTPGSEITVIRKNPFGGPVVIKVD-GSRIAL 62 (74)
T ss_dssp HHHHHCT-STTEEEEEEEEETTSSEEEEEET-TEEEEE
T ss_pred HHHHHCCCCCCCEEEEEEeCCCCCCEEEEEC-CEEEEc
Confidence 3588999999999998866555556666665 445544
No 253
>CHL00030 rpl23 ribosomal protein L23
Probab=61.34 E-value=26 Score=21.47 Aligned_cols=34 Identities=21% Similarity=0.132 Sum_probs=29.4
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEE
Q 032747 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (134)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L 43 (134)
...+.+.|++++|=.++|+.|+..+++.+..-+-
T Consensus 19 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt 52 (93)
T CHL00030 19 KNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNS 52 (93)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEE
Confidence 4678999999999999999999999988765543
No 254
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=60.27 E-value=33 Score=20.23 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=28.5
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhhhCCCC--CceEEE
Q 032747 10 GKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLI 44 (134)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~--~~q~L~ 44 (134)
+....+.|.+++|..++-..+.+++++.. ..-.|+
T Consensus 15 ~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~ 51 (90)
T smart00314 15 GTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLV 51 (90)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEE
Confidence 56678999999999999999999999864 344444
No 255
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=59.15 E-value=39 Score=21.84 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=25.1
Q ss_pred EEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCC
Q 032747 88 EIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQS 123 (134)
Q Consensus 88 ~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g 123 (134)
..-+-|..+.||+++..-|..+-++++++..|+.++
T Consensus 42 ~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn 77 (121)
T PTZ00380 42 VHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEG 77 (121)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECC
Confidence 333357888888888888888888888774443333
No 256
>PF10787 YfmQ: Uncharacterised protein from bacillus cereus group; InterPro: IPR019723 This entry represents proteins conserved in the Bacillus cereus group. Several members are called YfmQ but the function is not known.
Probab=57.60 E-value=39 Score=22.43 Aligned_cols=87 Identities=17% Similarity=0.304 Sum_probs=55.8
Q ss_pred CCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCC------------ccccccccccceEEEEEeecceeeeeeecCC
Q 032747 19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT------------LADYNIQKESTLHLVLRLRGGTMIKVKTLTG 86 (134)
Q Consensus 19 ~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~------------L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~ 86 (134)
|+..|.-|-.+.+-+-....+.-.+.++|+.|+++.. |..|.+.+|+.=...-...+|.|+.+.+..|
T Consensus 23 Pt~vVe~liskfe~H~kL~~~~~tVti~G~~Lege~K~~~I~~FNeAiFLekyY~~P~~e~~~l~pe~~gtPlvI~tKkG 102 (149)
T PF10787_consen 23 PTSVVEWLISKFELHPKLDEENTTVTIDGKRLEGEDKSQIIDQFNEAIFLEKYYIPPGNEERYLHPENSGTPLVIDTKKG 102 (149)
T ss_pred cHHHHHHHHHHheecccccccceEEEECCeecCchHHHHHHHHHhHHHHHHhhccCCCCcccccCcccCCCCEEEEeccC
Confidence 5666777777666666666677788899999986643 5556676666532222345678899998876
Q ss_pred c-EEEEEecc-CCcHHHHHHH
Q 032747 87 K-EIEIDIEP-TDTIERIKER 105 (134)
Q Consensus 87 ~-~~~~~V~~-~~tV~~lK~~ 105 (134)
+ .+++-+=+ .|-|.-+|+.
T Consensus 103 K~dv~f~vYsYdDHVDVVKQy 123 (149)
T PF10787_consen 103 KKDVTFFVYSYDDHVDVVKQY 123 (149)
T ss_pred cceeEEEEEecccHHHHHHHh
Confidence 5 45555433 4455555554
No 257
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=56.80 E-value=32 Score=20.97 Aligned_cols=58 Identities=17% Similarity=0.299 Sum_probs=33.6
Q ss_pred EEcCCCcHHHHHHHHHhhhCCCCCceEEEEc-C------EEcCCC---CCc--cccccccccceEEEEEeec
Q 032747 16 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-G------KQLEDG---RTL--ADYNIQKESTLHLVLRLRG 75 (134)
Q Consensus 16 ~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~-g------~~L~d~---~~L--~~~~i~~~~~i~l~~~~~~ 75 (134)
.+....||.+|-+.+.+.. +..+.+++.. | ..|-++ ..+ .++-+++|+.|.+.....|
T Consensus 24 ~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v~G 93 (94)
T cd01764 24 DGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTLHG 93 (94)
T ss_pred cCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCCCC
Confidence 3335779999999998876 3334444432 2 112122 223 2466888998887654433
No 258
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=56.58 E-value=38 Score=19.75 Aligned_cols=55 Identities=9% Similarity=0.117 Sum_probs=31.9
Q ss_pred EEEcC-CCcHHHHHHHHHhhhCC-----CCCceEEEEcCEEcCCCCCccccccccccceEEEEEee
Q 032747 15 LEVES-SDTIDNVKAKIQDKEGI-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (134)
Q Consensus 15 ~~v~~-~~tv~~lK~~i~~~~gi-----~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (134)
+++++ ..||.+|++.+.++..- .....+...|++...+ +.-+++|+.|-+.....
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~-----~~~l~dgDeVai~PPVs 79 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVT 79 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCC-----CCCCCCCCEEEEeCCCC
Confidence 44443 57999999999887521 1122344455543322 33477888887754433
No 259
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=55.96 E-value=21 Score=21.12 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=17.7
Q ss_pred EEEEEcCCCcHHHHHHHHHhhh
Q 032747 13 ITLEVESSDTIDNVKAKIQDKE 34 (134)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~ 34 (134)
++++++.++|+.++|+.+-++-
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A 23 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEA 23 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHG
T ss_pred eEEEccCcCcHHHHHHHHHHHH
Confidence 4688999999999999887653
No 260
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=54.36 E-value=20 Score=20.70 Aligned_cols=43 Identities=19% Similarity=0.306 Sum_probs=27.9
Q ss_pred CcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEE
Q 032747 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (134)
Q Consensus 21 ~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l 69 (134)
.|+.+|.+.-++++|+++ ...+.-+|...+|-..+ .+|+.+++
T Consensus 26 ~SleeLl~ia~~kfg~~~-~~v~~~dgaeIdDI~~I-----RDgD~L~~ 68 (69)
T PF11834_consen 26 DSLEELLKIASEKFGFSA-TKVLNEDGAEIDDIDVI-----RDGDHLYL 68 (69)
T ss_pred ccHHHHHHHHHHHhCCCc-eEEEcCCCCEEeEEEEE-----EcCCEEEE
Confidence 699999999999999973 33344456555544333 34555543
No 261
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=53.09 E-value=15 Score=28.03 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=50.1
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhh-CCCCCceEEEEcC---EEcC--CCCCccccccccccc
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLIFAG---KQLE--DGRTLADYNIQKEST 66 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~-gi~~~~q~L~~~g---~~L~--d~~~L~~~~i~~~~~ 66 (134)
+|.||.++|+.....+-++++|.-|-.-++.+. |.+-++.+|+.+- +.|+ .+.|+.++||.+..+
T Consensus 279 ~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 279 SIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred EEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 478999999888777788999998888777765 4555677887664 4453 567999999988764
No 262
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=52.47 E-value=19 Score=25.56 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=27.5
Q ss_pred EEEEeccCCcHHHHHHHhhhhcCCCCCcceEE
Q 032747 89 IEIDIEPTDTIERIKERVEEKEGIPPVQQRYP 120 (134)
Q Consensus 89 ~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~ 120 (134)
..-+..++.|++++|.++.-.+|.+++.+.|.
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~ 46 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELE 46 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEE
Confidence 44456778999999999999999999999874
No 263
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=52.43 E-value=22 Score=30.59 Aligned_cols=40 Identities=18% Similarity=0.323 Sum_probs=32.0
Q ss_pred CCcEEEEEecc-CCcHHHHHHHhhhhcCCCCCcceEEeCCe
Q 032747 85 TGKEIEIDIEP-TDTIERIKERVEEKEGIPPVQQRYPIQSF 124 (134)
Q Consensus 85 ~~~~~~~~V~~-~~tV~~lK~~i~~~~gip~~~q~L~~~g~ 124 (134)
.|+..+++.+. ..|+++||..|+...|+.+..+.+.-+|-
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egG 43 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGG 43 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCC
Confidence 46666666655 66999999999999999999888876553
No 264
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=51.84 E-value=25 Score=21.05 Aligned_cols=56 Identities=16% Similarity=0.260 Sum_probs=37.5
Q ss_pred EEEcCCCcHHHHHHHHHhhhCCC-------CCceEEEEcCEE-cC------CCCCccccccccccceEEEE
Q 032747 15 LEVESSDTIDNVKAKIQDKEGIP-------PDQQRLIFAGKQ-LE------DGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gi~-------~~~q~L~~~g~~-L~------d~~~L~~~~i~~~~~i~l~~ 71 (134)
+++++++|+.+|-+.+...-.+. .+.-.|++.+-+ |+ =+++|.++ +.+|..|.+.-
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~VtD 70 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVTD 70 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEEC
Confidence 57899999999999999873222 234455554421 21 24678888 88888887643
No 265
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=51.51 E-value=38 Score=20.19 Aligned_cols=40 Identities=15% Similarity=0.261 Sum_probs=29.4
Q ss_pred CCcHHHHHHHHHhhhCCCCC--ceEEE--EcCEEcCCCCCcccc
Q 032747 20 SDTIDNVKAKIQDKEGIPPD--QQRLI--FAGKQLEDGRTLADY 59 (134)
Q Consensus 20 ~~tv~~lK~~i~~~~gi~~~--~q~L~--~~g~~L~d~~~L~~~ 59 (134)
..|..+|+.+....++++.. .-+|. -+|..++|+.-...+
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEeyF~tL 63 (80)
T cd06536 20 ASSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFLCL 63 (80)
T ss_pred cCCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHHHHhhC
Confidence 35799999999999999832 24554 469999887665554
No 266
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=50.62 E-value=43 Score=20.14 Aligned_cols=34 Identities=18% Similarity=0.127 Sum_probs=27.4
Q ss_pred cEEEEEeccCCcHHHHHHHhhhhcCC-CCCcceEE
Q 032747 87 KEIEIDIEPTDTIERIKERVEEKEGI-PPVQQRYP 120 (134)
Q Consensus 87 ~~~~~~V~~~~tV~~lK~~i~~~~gi-p~~~q~L~ 120 (134)
...++.|.|..|.++|-.+.+++.++ .|+...|+
T Consensus 14 t~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LF 48 (87)
T cd01776 14 TGKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLF 48 (87)
T ss_pred eeeeeecCCCCcHHHHHHHHHHHhccCChhheeEE
Confidence 35678999999999999999999985 45555554
No 267
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=50.09 E-value=57 Score=19.82 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=25.0
Q ss_pred cEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEE
Q 032747 87 KEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYP 120 (134)
Q Consensus 87 ~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~ 120 (134)
..++-.+...|||+.+.+.+++...| ...-||+
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW 46 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLW 46 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEE
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-Cccceeh
Confidence 36777789999999999999999999 5556664
No 268
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=49.78 E-value=47 Score=22.52 Aligned_cols=39 Identities=10% Similarity=0.062 Sum_probs=32.2
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEE-EcCE
Q 032747 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK 48 (134)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~g~ 48 (134)
...+.|.|++++|=.++|..|+..+|+.+...+.+ ..|+
T Consensus 22 ~N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~K 61 (158)
T PRK12280 22 KNVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDKK 61 (158)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCCc
Confidence 35799999999999999999999999998666544 4443
No 269
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=49.19 E-value=56 Score=19.53 Aligned_cols=43 Identities=12% Similarity=0.161 Sum_probs=33.9
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEc
Q 032747 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (134)
Q Consensus 3 i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 46 (134)
.+++. +|....+.++..-|-..|+++|...+.+|+...-+.|-
T Consensus 3 fKv~~-~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYi 45 (82)
T cd06397 3 FKSSF-LGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYI 45 (82)
T ss_pred EEEEe-CCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEE
Confidence 45543 56666777778889999999999999999877777774
No 270
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=48.97 E-value=33 Score=24.06 Aligned_cols=43 Identities=26% Similarity=0.440 Sum_probs=27.7
Q ss_pred cccceEEEEEeecceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcC
Q 032747 63 KESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEG 111 (134)
Q Consensus 63 ~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~g 111 (134)
.|+++|++....+.-++.+ ...+.|.++||.++|-++++..+-
T Consensus 140 ~GctvHfV~EevD~G~iI~------q~~v~V~~~Dt~esl~qrv~~aEH 182 (206)
T KOG3076|consen 140 SGCTVHFVIEEVDTGPIIA------QMAVPVIPGDTLESLEQRVHDAEH 182 (206)
T ss_pred ccceEEEehhhccCCCceE------EEeeeecCCCCHHHHHHHHHHHHH
Confidence 4666766555432222211 234678899999999999997665
No 271
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=48.95 E-value=53 Score=19.15 Aligned_cols=34 Identities=15% Similarity=0.290 Sum_probs=23.8
Q ss_pred CEEEEEeCCCCE---EEEEEcCCCcHHHHHHHHHhhh
Q 032747 1 MQIFVKTLTGKT---ITLEVESSDTIDNVKAKIQDKE 34 (134)
Q Consensus 1 m~i~v~~~~g~~---~~~~v~~~~tv~~lK~~i~~~~ 34 (134)
++|.-|..++.. -++.+..++||.|+-.+|....
T Consensus 2 irvytk~~g~~~d~~~~liL~~GaTV~D~a~~iH~di 38 (75)
T cd01666 2 IRVYTKPKGQEPDFDEPVILRRGSTVEDVCNKIHKDL 38 (75)
T ss_pred EEEEeCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHH
Confidence 355566554322 3477889999999999999643
No 272
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=48.55 E-value=60 Score=19.63 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=26.1
Q ss_pred CCcEEEEEeccCCcHHHHHHHhhhhcCCC
Q 032747 85 TGKEIEIDIEPTDTIERIKERVEEKEGIP 113 (134)
Q Consensus 85 ~~~~~~~~V~~~~tV~~lK~~i~~~~gip 113 (134)
.|....+.|.++-+-.+|..+|.++.|+.
T Consensus 10 ~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~ 38 (86)
T cd06408 10 QDDTRYIMIGPDTGFADFEDKIRDKFGFK 38 (86)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 45688899999999999999999999985
No 273
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=47.44 E-value=63 Score=19.61 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=26.0
Q ss_pred CcEEEEEec-----cCCcHHHHHHHhhhhcCCCC-CcceEEe
Q 032747 86 GKEIEIDIE-----PTDTIERIKERVEEKEGIPP-VQQRYPI 121 (134)
Q Consensus 86 ~~~~~~~V~-----~~~tV~~lK~~i~~~~gip~-~~q~L~~ 121 (134)
|....+.+. ++-+..+|+.+|++...+++ ....|.|
T Consensus 9 ~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y 50 (91)
T cd06398 9 GTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTY 50 (91)
T ss_pred CEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEE
Confidence 334445554 36799999999999999988 4555555
No 274
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=47.18 E-value=17 Score=20.14 Aligned_cols=32 Identities=16% Similarity=0.315 Sum_probs=22.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHh
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD 32 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~ 32 (134)
|.|++.+.+|+.|.++...-.--.-++..++.
T Consensus 1 ~~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~ 32 (62)
T PF03931_consen 1 MYVKLVSSDGQEFEVSREAAKQSKTIKNMLED 32 (62)
T ss_dssp -EEEEEETTSEEEEEEHHHHTTSHHHHHHHHC
T ss_pred CEEEEEcCCCCEEEeeHHHHHHhHHHHHHHhh
Confidence 67899999999999886544444445555554
No 275
>PRK01777 hypothetical protein; Validated
Probab=46.85 E-value=67 Score=19.70 Aligned_cols=50 Identities=6% Similarity=0.092 Sum_probs=33.5
Q ss_pred EEEEEcCCCcHHHHHHHHHhhhCCCCC-------ceEEEEcCEEcCCCCCccccccccccceEEEE
Q 032747 13 ITLEVESSDTIDNVKAKIQDKEGIPPD-------QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gi~~~-------~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (134)
..+++.+++||.++-... |++.. .-.+..+|+...- +.-+.+|++|.+.-
T Consensus 19 ~~l~vp~GtTv~dal~~s----gi~~~~pei~~~~~~vgI~Gk~v~~-----d~~L~dGDRVeIyr 75 (95)
T PRK01777 19 QRLTLQEGATVEEAIRAS----GLLELRTDIDLAKNKVGIYSRPAKL-----TDVLRDGDRVEIYR 75 (95)
T ss_pred EEEEcCCCCcHHHHHHHc----CCCccCcccccccceEEEeCeECCC-----CCcCCCCCEEEEec
Confidence 567888999999887654 54443 2355567777653 33556789988754
No 276
>PF01376 Enterotoxin_b: Heat-labile enterotoxin beta chain; InterPro: IPR001835 Escherichia coli heat-labile enterotoxin is a bacterial protein toxin with an AB5 multimer structure, in which the B pentamer has a membrane-binding function and the A chain (IPR001144 from INTERPRO) is needed for enzymatic activity []. The B subunits are arranged as a donut-shaped pentamer, each subunit participating in ~30 hydrogen bonds and 6 salt bridges with its two neighbours []. The A subunit has a less well-defined secondary structure. It predominantly interacts with the pentamer via the C-terminal A2 fragment, which runs through the charged central pore of the B subunits. A putative catalytic residue in the A1 fragment (Glu112) lies close to a hydrophobic region, which packs two loops together. It is thought that this region might be important for catalysis and membrane translocation [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1LTA_D 2XRS_O 1LTS_E 1LTT_H 1TET_P 1JQY_Y 1PZI_D 1DJR_E 1EEF_D 1LTB_E ....
Probab=46.71 E-value=35 Score=20.45 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=21.6
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhh
Q 032747 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (134)
Q Consensus 3 i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~ 33 (134)
+.+...+|..|.++|+.+.-+..-|..|+..
T Consensus 38 ~iitf~ngatfqvevpgsqhi~sqkk~ierm 68 (102)
T PF01376_consen 38 VIITFKNGATFQVEVPGSQHIDSQKKAIERM 68 (102)
T ss_dssp EEEEETTS-EEEE--SSTTSTTTHHHHHHHH
T ss_pred EEEEecCCcEEEEecCCccchhhhHHHHHHH
Confidence 4567789999999999988777777776654
No 277
>PRK08453 fliD flagellar capping protein; Validated
Probab=46.57 E-value=73 Score=26.79 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=22.8
Q ss_pred CCCEEEEEEcCCCcHHHHHHHHHhh
Q 032747 9 TGKTITLEVESSDTIDNVKAKIQDK 33 (134)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~ 33 (134)
+|+.+.++|+..+|+.+|+++|...
T Consensus 136 ~G~~~sIdi~~gtTL~~L~~~INd~ 160 (673)
T PRK08453 136 QGKDYAIDIKAGMTLGDVAQSITDA 160 (673)
T ss_pred CCEEEEEEeCCCCcHHHHHHHhcCC
Confidence 5899999999999999999999954
No 278
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=46.46 E-value=75 Score=20.16 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=29.2
Q ss_pred CEEEEEeCCCCEE--EEEEcCCCcHHHHHHHHHhhhCCC
Q 032747 1 MQIFVKTLTGKTI--TLEVESSDTIDNVKAKIQDKEGIP 37 (134)
Q Consensus 1 m~i~v~~~~g~~~--~~~v~~~~tv~~lK~~i~~~~gi~ 37 (134)
|+.+....+++.. .+.|+.++|..++.+.+-+++.+.
T Consensus 24 mrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d 62 (112)
T cd01782 24 MRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPD 62 (112)
T ss_pred EEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhccc
Confidence 6777777665443 488999999999999999998744
No 279
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=46.12 E-value=32 Score=20.42 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=18.8
Q ss_pred EEEEEcCCCcHHHHHHHHHhhh
Q 032747 13 ITLEVESSDTIDNVKAKIQDKE 34 (134)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~ 34 (134)
..+.++.++|+.++|..+-+.-
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~A 23 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQA 23 (78)
T ss_pred eeEEccccccHHHHHHHHHHHH
Confidence 4678899999999999997764
No 280
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=45.52 E-value=45 Score=20.26 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=28.8
Q ss_pred CcEEEEEeccCCcHHHHHHHhhhhcCCCCCcce
Q 032747 86 GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQR 118 (134)
Q Consensus 86 ~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~ 118 (134)
...+++.|++..|-.++|+-++..+|+++..-+
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~Vn 52 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVN 52 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEE
Confidence 358999999999999999999999998886543
No 281
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=45.10 E-value=65 Score=24.38 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=39.6
Q ss_pred CCCcHHHHHHHHHhhh--------------C-CCCCceEEEEcCEEcCCCCCcccccc---ccccceEEEEEe
Q 032747 19 SSDTIDNVKAKIQDKE--------------G-IPPDQQRLIFAGKQLEDGRTLADYNI---QKESTLHLVLRL 73 (134)
Q Consensus 19 ~~~tv~~lK~~i~~~~--------------g-i~~~~q~L~~~g~~L~d~~~L~~~~i---~~~~~i~l~~~~ 73 (134)
.-..|..++..|.+++ . -|.+...|+++|+.|+.+.+|+...- +.+.-|.|..|.
T Consensus 256 ~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~ 328 (331)
T PF11816_consen 256 RMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRR 328 (331)
T ss_pred chhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEe
Confidence 3346788888888877 2 34456899999999999999887642 556666666653
No 282
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=44.88 E-value=53 Score=18.01 Aligned_cols=58 Identities=12% Similarity=0.121 Sum_probs=36.6
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEE
Q 032747 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (134)
Q Consensus 3 i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l 69 (134)
|.|..++|+... ++.+.|+.++-..|....+-. -.--..+|+..+-+. .+++|+++.+
T Consensus 1 I~v~lpdG~~~~--~~~g~T~~d~A~~I~~~l~~~--~~~A~Vng~~vdl~~-----~L~~~d~v~i 58 (60)
T PF02824_consen 1 IRVYLPDGSIKE--LPEGSTVLDVAYSIHSSLAKR--AVAAKVNGQLVDLDH-----PLEDGDVVEI 58 (60)
T ss_dssp EEEEETTSCEEE--EETTBBHHHHHHHHSHHHHHC--EEEEEETTEEEETTS-----BB-SSEEEEE
T ss_pred CEEECCCCCeee--CCCCCCHHHHHHHHCHHHHhh--eeEEEEcCEECCCCC-----CcCCCCEEEE
Confidence 456668888866 678999999999999876311 112236676654333 3445666654
No 283
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=44.08 E-value=61 Score=19.29 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=28.6
Q ss_pred CCcHHHHHHHHHhhhCCCCC-ceEEEEcCEEcCCCCCcccc
Q 032747 20 SDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADY 59 (134)
Q Consensus 20 ~~tv~~lK~~i~~~~gi~~~-~q~L~~~g~~L~d~~~L~~~ 59 (134)
..|..+|+.+....++++.. ...|.-+|..++|+.-...+
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~lvL~eDGT~Vd~EeyF~tL 60 (79)
T cd06538 20 ADSLEDLLNKVLDALLLDCISSLVLDEDGTGVDTEEFFQAL 60 (79)
T ss_pred cCCHHHHHHHHHHHcCCCCccEEEEecCCcEEccHHHHhhC
Confidence 35799999999999998532 23334568999877655554
No 284
>PLN02828 formyltetrahydrofolate deformylase
Probab=43.54 E-value=7.8 Score=28.52 Aligned_cols=41 Identities=12% Similarity=0.062 Sum_probs=26.2
Q ss_pred EEEEeccCCcHHHHHHHhhhhcC-CCCCcceEEeCCeEEEEE
Q 032747 89 IEIDIEPTDTIERIKERVEEKEG-IPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 89 ~~~~V~~~~tV~~lK~~i~~~~g-ip~~~q~L~~~g~~l~~~ 129 (134)
-.+.|.+++|.++|.+++++.+. +-+..-++..+++++-|.
T Consensus 220 ~~v~V~~~dt~~~L~~r~~~~E~~~l~~av~~~~~~~~~~~~ 261 (268)
T PLN02828 220 MVERVSHRDNLRSFVQKSENLEKQCLAKAIKSYCELRVLPYG 261 (268)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeEEcC
Confidence 34778899999999999987766 122222333445554443
No 285
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=42.58 E-value=69 Score=24.89 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=38.5
Q ss_pred eeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcC-CCCCcceEE--eCCeEEEEE
Q 032747 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEG-IPPVQQRYP--IQSFILFYF 129 (134)
Q Consensus 78 ~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~g-ip~~~q~L~--~~g~~l~~~ 129 (134)
.|.|+..+|+.....++-+.||.+++.-|+..-. -+...|.|+ |.++.|-++
T Consensus 307 sIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~ 361 (380)
T KOG2086|consen 307 SIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDD 361 (380)
T ss_pred eEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCc
Confidence 5678888999999999999999999999996554 333355555 455555443
No 286
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=42.07 E-value=65 Score=18.46 Aligned_cols=43 Identities=21% Similarity=0.324 Sum_probs=29.1
Q ss_pred HhhhCCCCCceEEEEcCEEcCCCCCcccc--ccccccceEEEEEe
Q 032747 31 QDKEGIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLRL 73 (134)
Q Consensus 31 ~~~~gi~~~~q~L~~~g~~L~d~~~L~~~--~i~~~~~i~l~~~~ 73 (134)
++..|+.+.+.-+..+|+++.+...+..+ ....|.++.+.+.-
T Consensus 27 A~~aGl~~GD~I~~ing~~v~~~~~~~~~l~~~~~g~~v~l~v~R 71 (82)
T PF13180_consen 27 AAKAGLQPGDIILAINGKPVNSSEDLVNILSKGKPGDTVTLTVLR 71 (82)
T ss_dssp HHHTTS-TTEEEEEETTEESSSHHHHHHHHHCSSTTSEEEEEEEE
T ss_pred HHHCCCCCCcEEEEECCEEcCCHHHHHHHHHhCCCCCEEEEEEEE
Confidence 34567889999999999998655444433 34677777776653
No 287
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=40.90 E-value=71 Score=19.09 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=28.3
Q ss_pred CCcHHHHHHHHHhhhCCCCCceEEE--EcCEEcCCCCCcccc
Q 032747 20 SDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADY 59 (134)
Q Consensus 20 ~~tv~~lK~~i~~~~gi~~~~q~L~--~~g~~L~d~~~L~~~ 59 (134)
..+..+|+.+..+.++++. .-+|. -+|..++|+.-...+
T Consensus 20 A~sL~EL~~K~~~~L~~~~-~~~lvLeeDGT~Vd~EeyF~tL 60 (81)
T cd06537 20 AASLQELLAKALETLLLSG-VLTLVLEEDGTAVDSEDFFELL 60 (81)
T ss_pred ccCHHHHHHHHHHHhCCCC-ceEEEEecCCCEEccHHHHhhC
Confidence 3579999999999999863 24444 468999877655554
No 288
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=40.44 E-value=24 Score=26.76 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=38.1
Q ss_pred EEEEcCCCcHHHHHHHHHhhhC-C-CCCceEEEEcCEEcCCCCCcccc
Q 032747 14 TLEVESSDTIDNVKAKIQDKEG-I-PPDQQRLIFAGKQLEDGRTLADY 59 (134)
Q Consensus 14 ~~~v~~~~tv~~lK~~i~~~~g-i-~~~~q~L~~~g~~L~d~~~L~~~ 59 (134)
.+.++..+||.+||.-+..+.+ . +..+..+++++..|.+..||.+.
T Consensus 167 fvrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~i 214 (331)
T KOG2660|consen 167 FLRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKDI 214 (331)
T ss_pred eEeccHHHHHHHHHHHHHHHhccccchhhheeecCCccccchhhhhhh
Confidence 4678889999999999999988 4 34566888999999999998854
No 289
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=40.01 E-value=69 Score=23.79 Aligned_cols=37 Identities=11% Similarity=0.252 Sum_probs=32.4
Q ss_pred eeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCC
Q 032747 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPP 114 (134)
Q Consensus 78 ~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~ 114 (134)
.+.|+.++|++.+..+++.+|-+.++.-++...|.-.
T Consensus 212 rlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~ 248 (290)
T KOG2689|consen 212 RLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGL 248 (290)
T ss_pred EEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCC
Confidence 4568888999999999999999999999998887655
No 290
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=39.48 E-value=84 Score=19.68 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=28.0
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCC
Q 032747 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (134)
Q Consensus 3 i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~ 38 (134)
++|-..+|+...+.|..-.+-.+++.++-+++|.+.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 566677899999999999999999999999999887
No 291
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=39.03 E-value=95 Score=19.24 Aligned_cols=33 Identities=12% Similarity=0.137 Sum_probs=27.3
Q ss_pred ecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCC
Q 032747 83 TLTGKEIEIDIEPTDTIERIKERVEEKEGIPPV 115 (134)
Q Consensus 83 ~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~ 115 (134)
-.++...++....+.||++|-.++..+..++..
T Consensus 9 r~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~ 41 (97)
T cd01775 9 RSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSG 41 (97)
T ss_pred ecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCC
Confidence 345556778889999999999999999988773
No 292
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=36.80 E-value=11 Score=28.19 Aligned_cols=31 Identities=13% Similarity=0.279 Sum_probs=0.0
Q ss_pred CCcHHHHHHHhhh----------hcCCCCCcce-----EEeCCeEE
Q 032747 96 TDTIERIKERVEE----------KEGIPPVQQR-----YPIQSFIL 126 (134)
Q Consensus 96 ~~tV~~lK~~i~~----------~~gip~~~q~-----L~~~g~~l 126 (134)
+.+|.++|..+++ .+++|.+... |.|+-+.+
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv 148 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPV 148 (309)
T ss_dssp ----------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccC
Confidence 5799999999999 8999999998 99998887
No 293
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=36.75 E-value=1e+02 Score=20.61 Aligned_cols=33 Identities=9% Similarity=0.135 Sum_probs=28.8
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEE
Q 032747 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (134)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L 43 (134)
..+.|.|+...+=.++|+.|+..+++.+...+-
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNT 115 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNT 115 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEe
Confidence 578999999999999999999999998765543
No 294
>KOG3852 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.68 E-value=29 Score=26.32 Aligned_cols=40 Identities=18% Similarity=0.468 Sum_probs=29.1
Q ss_pred cCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEEecc
Q 032747 84 LTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYFSNK 132 (134)
Q Consensus 84 ~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~~~~ 132 (134)
..|+..++.. |.+++++.+ ..++.++++..+-++||.|+.
T Consensus 192 ~~GknvELKF-----Vds~RRQFE----FSVDSFQI~LD~lL~fy~cs~ 231 (426)
T KOG3852|consen 192 NSGKNVELKF-----VDSLRRQFE----FSVDSFQIILDPLLLFYSCSN 231 (426)
T ss_pred CCCCeeEEEe-----hHhhhhhee----eeeceeeeeehhhhhhhcccC
Confidence 3455555543 566666655 678999999999999999863
No 295
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=36.44 E-value=92 Score=18.29 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=33.7
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEE
Q 032747 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (134)
Q Consensus 3 i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~ 44 (134)
|.+..++.+.-.++|.|+.|+.+--.+.-+..|+.++--...
T Consensus 2 ir~~LPnqQrT~V~vrpG~tl~daL~KaLk~R~l~pe~C~V~ 43 (74)
T cd01816 2 IRVFLPNKQRTVVNVRPGMTLRDALAKALKVRGLQPECCAVF 43 (74)
T ss_pred eeEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCChhHeEEE
Confidence 455667777778999999999999989999999888655554
No 296
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=36.27 E-value=60 Score=24.06 Aligned_cols=23 Identities=9% Similarity=-0.005 Sum_probs=19.3
Q ss_pred EEEEeccCCcHHHHHHHhhhhcC
Q 032747 89 IEIDIEPTDTIERIKERVEEKEG 111 (134)
Q Consensus 89 ~~~~V~~~~tV~~lK~~i~~~~g 111 (134)
-.+.|.+++|.++|.+++++.+.
T Consensus 238 ~~v~I~~~dt~~~L~~r~~~~E~ 260 (286)
T PRK13011 238 DVERVDHAYSPEDLVAKGRDVEC 260 (286)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 34778999999999999987665
No 297
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=35.14 E-value=27 Score=23.04 Aligned_cols=27 Identities=15% Similarity=0.284 Sum_probs=23.3
Q ss_pred EcCCCCCccccccccccceEEEEEeec
Q 032747 49 QLEDGRTLADYNIQKESTLHLVLRLRG 75 (134)
Q Consensus 49 ~L~d~~~L~~~~i~~~~~i~l~~~~~~ 75 (134)
-.+|+++|+..+++-|+-+.+.++++.
T Consensus 113 g~ddnktL~~~kf~iGD~lDVaI~~p~ 139 (151)
T KOG3391|consen 113 GIDDNKTLQQTKFEIGDYLDVAITPPN 139 (151)
T ss_pred cCCccchhhhCCccccceEEEEecCcc
Confidence 357889999999999999999998754
No 298
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=34.31 E-value=38 Score=21.59 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=23.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHH
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKI 30 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i 30 (134)
|+|.+.. +++.+..++..+.|..+|.+++
T Consensus 1 mkI~i~i-~~~~~~a~L~d~~ta~~~~~~L 29 (120)
T PF04126_consen 1 MKIKITI-GGQEIEAELNDSPTARAFAAQL 29 (120)
T ss_dssp EEEEEEE-TTEEEEEEEETTHHHHHHHHC-
T ss_pred CeEEEEE-CCEEEEEEECCCHHHHHHHHhC
Confidence 7888876 5788999999998888877765
No 299
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=34.12 E-value=1.1e+02 Score=18.40 Aligned_cols=58 Identities=5% Similarity=0.118 Sum_probs=36.4
Q ss_pred EEEEcCCCcHHHHHHHHHhhhCCCCCce-EEEEcCEEc-CCCCCcccccc--ccccceEEEE
Q 032747 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQL-EDGRTLADYNI--QKESTLHLVL 71 (134)
Q Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q-~L~~~g~~L-~d~~~L~~~~i--~~~~~i~l~~ 71 (134)
.+.|+.+.|++++..-|.++.++.+++- -|..+...+ ..+.+++++-- .++..+++..
T Consensus 19 kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~~~dGfLyi~Y 80 (87)
T cd01612 19 VFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCFGTNGELIVSY 80 (87)
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhcCCCCEEEEEE
Confidence 4568999999999999999999877653 333444323 33455554311 3344455444
No 300
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=33.74 E-value=69 Score=23.71 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=19.3
Q ss_pred EEEEeccCCcHHHHHHHhhhhcC
Q 032747 89 IEIDIEPTDTIERIKERVEEKEG 111 (134)
Q Consensus 89 ~~~~V~~~~tV~~lK~~i~~~~g 111 (134)
-.+.|.+++|.++|.+++++.+.
T Consensus 233 ~~v~I~~~dt~~~L~~ri~~~E~ 255 (280)
T TIGR00655 233 DVVRVDHTDNVEDLIRAGRDIEK 255 (280)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 34678899999999999997665
No 301
>PF08756 YfkB: YfkB-like domain; InterPro: IPR014866 YfkB is adjacent to YfkA in Bacillus subtilis. In other bacterial species, it is fused to this protein. As YfkA contains a Radical SAM domain it suggests this domain is interacts with them.
Probab=33.35 E-value=47 Score=22.12 Aligned_cols=80 Identities=18% Similarity=0.223 Sum_probs=51.1
Q ss_pred CCCcHHHHHHHHHhhhCCCCCceEEEEcCEEc-------CCCCCccccccccccceEEEEEeecceeeeeeecCCcEEEE
Q 032747 19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-------EDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEI 91 (134)
Q Consensus 19 ~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L-------~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~ 91 (134)
+..+..++|+.|.....+--.+..++|+--+. +|...|+.+.- ...+.+.--+.|...++|+..+|..+.-
T Consensus 11 ~vLsL~e~r~aIh~LLd~Rd~~~WMLFGTLPfy~Cs~~eeD~~Ll~RL~~--~~NVTvRNDPDGRsRLNvNiFtGdviVT 88 (153)
T PF08756_consen 11 EVLSLDEMREAIHRLLDIRDPNVWMLFGTLPFYPCSDDEEDLALLKRLRS--EPNVTVRNDPDGRSRLNVNIFTGDVIVT 88 (153)
T ss_pred ccCCHHHHHHHHHHHHhccCCCeeEEecccccccCCCCHHHHHHHHHHHh--CCCCeeecCCCccceeeeeEecCCEEEe
Confidence 45689999999999988777777777775432 12233444432 2344455556677788888888877666
Q ss_pred EeccCCcHH
Q 032747 92 DIEPTDTIE 100 (134)
Q Consensus 92 ~V~~~~tV~ 100 (134)
++...-+.+
T Consensus 89 DFgD~~~lg 97 (153)
T PF08756_consen 89 DFGDEPPLG 97 (153)
T ss_pred cCCCCCCcc
Confidence 554333333
No 302
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=33.12 E-value=1.5e+02 Score=19.92 Aligned_cols=43 Identities=26% Similarity=0.400 Sum_probs=29.2
Q ss_pred EEEEEcC-CCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCcccc
Q 032747 13 ITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 59 (134)
Q Consensus 13 ~~~~v~~-~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~ 59 (134)
+.+++.. .+.+..+++...+.+.++. .+ ..|+-+....|++||
T Consensus 77 i~lele~~~~~ie~I~~iCee~lpf~y---~i-~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 77 IILELEDEEDVIEKIREICEEVLPFGY---DI-KEGKFIRTKPTVTDY 120 (153)
T ss_pred EEEEecCcHHHHHHHHHHHHHhCCCce---Ee-eeeEEeccCCchhhh
Confidence 4566666 6677777776666653332 22 358889999999998
No 303
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=30.75 E-value=1.7e+02 Score=19.65 Aligned_cols=43 Identities=26% Similarity=0.397 Sum_probs=28.4
Q ss_pred EEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCcccc
Q 032747 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 59 (134)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~ 59 (134)
+.+++...+.+.++++...+.+-++. . +..|+-+....|++||
T Consensus 76 I~le~~~~~~i~~I~eiC~e~~pF~y---~-i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 76 IILELEDEDIVEEIEEICKEMLPFGY---E-VRVGKFLRTKPTVTDY 118 (150)
T ss_pred EEEEecCHHHHHHHHHHHHhhCCCce---E-eeeeeEeecCCchhhh
Confidence 44555566778888776666654332 1 2347788888999987
No 304
>PF08299 Bac_DnaA_C: Bacterial dnaA protein helix-turn-helix; InterPro: IPR013159 This entry represents the C-terminal domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; GO: 0005524 ATP binding, 0043565 sequence-specific DNA binding, 0006270 DNA-dependent DNA replication initiation, 0006275 regulation of DNA replication; PDB: 2HCB_B 3R8F_C 1L8Q_A 3PVP_B 3PVV_A 1J1V_A.
Probab=30.57 E-value=25 Score=20.07 Aligned_cols=19 Identities=16% Similarity=0.413 Sum_probs=13.5
Q ss_pred cHHHHHHHHHhhhCCCCCc
Q 032747 22 TIDNVKAKIQDKEGIPPDQ 40 (134)
Q Consensus 22 tv~~lK~~i~~~~gi~~~~ 40 (134)
|+.++.+.+++.+|+++++
T Consensus 1 t~~~Ii~~Va~~~~v~~~~ 19 (70)
T PF08299_consen 1 TIEDIIEAVAEYFGVSVED 19 (70)
T ss_dssp -HHHHHHHHHHHTT--HHH
T ss_pred CHHHHHHHHHHHHCCCHHH
Confidence 6788999999999988744
No 305
>KOG4147 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.55 E-value=56 Score=20.75 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=16.4
Q ss_pred EEcC-CCCCccccccccccceEEE
Q 032747 48 KQLE-DGRTLADYNIQKESTLHLV 70 (134)
Q Consensus 48 ~~L~-d~~~L~~~~i~~~~~i~l~ 70 (134)
..|+ ++++|..|||.+...|.+.
T Consensus 88 w~L~d~~ktL~~~GIenETEis~F 111 (127)
T KOG4147|consen 88 WLLKDEDKTLKAAGIENETEISFF 111 (127)
T ss_pred eeecCccchHHHhccCcchhhhhh
Confidence 4565 5678999999887766543
No 306
>KOG3483 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.02 E-value=1.2e+02 Score=17.86 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=40.5
Q ss_pred EEEcCCCcHHHHHHHHHhhhCCCCCceEEEEc-CEEcCCCCCccccccccccceEEEEEe
Q 032747 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADYNIQKESTLHLVLRL 73 (134)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~-g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (134)
+.|..++..-.+-+--++++.+|+..--++.+ |.-+....+.+..-++.|+.+.+..+.
T Consensus 31 ~svpestpftavlkfaaeefkvpaatsaiitndgiginpaq~agnvflkhgselr~iprd 90 (94)
T KOG3483|consen 31 LSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRD 90 (94)
T ss_pred ecCCCCCchHHHHHHHHHHccCCccceeEEecCccccCccccccceeeccCCEEEecccc
Confidence 34555666555554566778899877777665 555667778888778888888776553
No 307
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=29.39 E-value=86 Score=23.33 Aligned_cols=24 Identities=8% Similarity=0.032 Sum_probs=20.0
Q ss_pred EEEEEeccCCcHHHHHHHhhhhcC
Q 032747 88 EIEIDIEPTDTIERIKERVEEKEG 111 (134)
Q Consensus 88 ~~~~~V~~~~tV~~lK~~i~~~~g 111 (134)
...+.|.+++|.++|.++++..+.
T Consensus 241 Q~~v~V~~~dt~e~L~~r~~~~E~ 264 (289)
T PRK13010 241 QDVERVDHSYSPEDLVAKGRDVEC 264 (289)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345778999999999999997665
No 308
>COG1918 FeoA Fe2+ transport system protein A [Inorganic ion transport and metabolism]
Probab=28.86 E-value=67 Score=18.80 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=23.7
Q ss_pred CCccccccccccceEEEEEeecceeeeeeec
Q 032747 54 RTLADYNIQKESTLHLVLRLRGGTMIKVKTL 84 (134)
Q Consensus 54 ~~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~ 84 (134)
+.|.+.|+.+|+.+.+.-+-+.|-++.|++.
T Consensus 25 ~RL~~mG~~~G~~i~vi~~aplgdPi~v~v~ 55 (75)
T COG1918 25 RRLLSMGIVPGASITVVRKAPLGDPILVEVR 55 (75)
T ss_pred HHHHHcCCCCCCEEEEEEecCCCCCEEEEEC
Confidence 4578889999999998877776666666654
No 309
>COG3760 Uncharacterized conserved protein [Function unknown]
Probab=27.96 E-value=62 Score=21.81 Aligned_cols=56 Identities=20% Similarity=0.344 Sum_probs=36.4
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccce
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 67 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i 67 (134)
.++++...++.|.+.++... +-||| .|.+..|.. ||.|+.. ++.+.-+|+.+|++-
T Consensus 47 nLfLkdkK~q~~lv~~~e~~-~vDLk-~ih~~IG~~----RlsFg~~----E~l~E~LGv~pG~VT 102 (164)
T COG3760 47 NLFLKDKKDQFFLVTVDEDA-VVDLK-SIHETIGAA----RLSFGSP----ERLMEYLGVIPGSVT 102 (164)
T ss_pred eeEeecCCCCEEEEEecccc-eecHH-HHHHHhcee----eeecCCH----HHHHHHhCCCcCcee
Confidence 36788888877777776665 55788 488777643 6767643 234455677777653
No 310
>PF09469 Cobl: Cordon-bleu ubiquitin-like domain; InterPro: IPR019025 The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node []. ; PDB: 2DAJ_A.
Probab=27.04 E-value=47 Score=19.70 Aligned_cols=34 Identities=26% Similarity=0.496 Sum_probs=18.7
Q ss_pred HHhhhCCCCCceEEEE---cCEEcCCCCCcccccccc
Q 032747 30 IQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQK 63 (134)
Q Consensus 30 i~~~~gi~~~~q~L~~---~g~~L~d~~~L~~~~i~~ 63 (134)
|.++-.+.|..-.|+- ++.+|+-.++|.++||.+
T Consensus 3 IC~KCEfdp~htvLLrD~~s~e~LdLsKSLndlGirE 39 (79)
T PF09469_consen 3 ICEKCEFDPEHTVLLRDYQSGEELDLSKSLNDLGIRE 39 (79)
T ss_dssp HHHHTT--TTSEEEES-SS---B--TTS-HHHHT-SE
T ss_pred cccccccCcceEEEeecCCCCCcccccccHHHhhHHH
Confidence 5566667776766663 367899999999999974
No 311
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=26.80 E-value=54 Score=16.40 Aligned_cols=12 Identities=33% Similarity=0.905 Sum_probs=8.6
Q ss_pred CCeEEEEEeccc
Q 032747 122 QSFILFYFSNKC 133 (134)
Q Consensus 122 ~g~~l~~~~~~~ 133 (134)
+|..+||.|..|
T Consensus 23 E~~T~fy~C~~C 34 (39)
T PF01096_consen 23 EPMTLFYVCCNC 34 (39)
T ss_dssp SSSEEEEEESSS
T ss_pred CCCeEEEEeCCC
Confidence 456778888766
No 312
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=26.44 E-value=66 Score=18.91 Aligned_cols=42 Identities=29% Similarity=0.551 Sum_probs=30.9
Q ss_pred CCCEEEEEEcCCCcHHHHHHHHHhhhCCCC---CceEEE-EcCEEc
Q 032747 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLI-FAGKQL 50 (134)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~---~~q~L~-~~g~~L 50 (134)
+|+.+.+.++..+++.-+-++...+.+.++ ...++. ++|..+
T Consensus 8 ng~~i~~lvDTGA~~svis~~~~~~lg~~~~~~~~~~v~~a~G~~~ 53 (91)
T cd05484 8 NGKPLKFQLDTGSAITVISEKTWRKLGSPPLKPTKKRLRTATGTKL 53 (91)
T ss_pred CCEEEEEEEcCCcceEEeCHHHHHHhCCCccccccEEEEecCCCEe
Confidence 788999999999998888888888887653 334444 555544
No 313
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=26.28 E-value=1.3e+02 Score=17.51 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=15.7
Q ss_pred EEEEEeCCCCEEEEEEcCCC
Q 032747 2 QIFVKTLTGKTITLEVESSD 21 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~ 21 (134)
++.+...+|+.+.+.+++.+
T Consensus 57 ev~~~~~dG~~~ev~vD~~t 76 (83)
T PF13670_consen 57 EVEARDKDGKKVEVYVDPAT 76 (83)
T ss_pred EEEEEECCCCEEEEEEcCCC
Confidence 46667788999999988764
No 314
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=25.90 E-value=1.4e+02 Score=17.06 Aligned_cols=62 Identities=18% Similarity=0.373 Sum_probs=39.5
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEE
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (134)
.+++.. +|+. ++++...|+.+|-+ ..++++..--...+|..+..+. -.+.-+++|+.|.+.-
T Consensus 2 ~m~i~~-ng~~--~e~~~~~tv~dLL~----~l~~~~~~vav~vNg~iVpr~~-~~~~~l~~gD~ievv~ 63 (68)
T COG2104 2 PMTIQL-NGKE--VEIAEGTTVADLLA----QLGLNPEGVAVAVNGEIVPRSQ-WADTILKEGDRIEVVR 63 (68)
T ss_pred cEEEEE-CCEE--EEcCCCCcHHHHHH----HhCCCCceEEEEECCEEccchh-hhhccccCCCEEEEEE
Confidence 344433 3444 55566689998875 4567777777889999886332 2344566778877643
No 315
>PRK09555 feoA ferrous iron transport protein A; Reviewed
Probab=25.88 E-value=84 Score=18.18 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=22.4
Q ss_pred CCccccccccccceEEEEEeecceeeeeee
Q 032747 54 RTLADYNIQKESTLHLVLRLRGGTMIKVKT 83 (134)
Q Consensus 54 ~~L~~~~i~~~~~i~l~~~~~~~~~i~v~~ 83 (134)
..|.+.|+.+|+.|.+.-+.+-|-++.+..
T Consensus 24 ~rL~~mGl~pG~~V~v~~~aP~gdPi~i~v 53 (74)
T PRK09555 24 QKLLSLGMLPGSSFNVVRVAPLGDPIHIET 53 (74)
T ss_pred HHHHHcCCCCCCEEEEEEECCCCCCEEEEE
Confidence 458889999999999877766555555554
No 316
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=24.78 E-value=92 Score=24.13 Aligned_cols=47 Identities=11% Similarity=0.034 Sum_probs=40.0
Q ss_pred CCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEEec
Q 032747 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYFSN 131 (134)
Q Consensus 85 ~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~~~ 131 (134)
..+.+.+.|...-.-.+|+..+....|++.+.-.++|+++.+..+|.
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s 57 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNES 57 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchh
Confidence 45577788877778889999999999999999999999999877653
No 317
>smart00760 Bac_DnaA_C Bacterial dnaA protein helix-turn-helix domain. Could be involved in DNA-binding.
Probab=24.54 E-value=49 Score=18.04 Aligned_cols=19 Identities=21% Similarity=0.538 Sum_probs=15.8
Q ss_pred cHHHHHHHHHhhhCCCCCc
Q 032747 22 TIDNVKAKIQDKEGIPPDQ 40 (134)
Q Consensus 22 tv~~lK~~i~~~~gi~~~~ 40 (134)
|+.++.+.+++.+|+++++
T Consensus 1 ~~~~I~~~Va~~~~i~~~~ 19 (60)
T smart00760 1 TIEEIIEAVAEYFGVKPED 19 (60)
T ss_pred CHHHHHHHHHHHhCCCHHH
Confidence 5778899999999988755
No 318
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=24.44 E-value=2.6e+02 Score=19.81 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=22.2
Q ss_pred eccCCcHHHHHHHhhhhcCCCCCcceEEe
Q 032747 93 IEPTDTIERIKERVEEKEGIPPVQQRYPI 121 (134)
Q Consensus 93 V~~~~tV~~lK~~i~~~~gip~~~q~L~~ 121 (134)
++...|+.++-..+.+..||+..--.|++
T Consensus 86 ~~aP~tid~~i~~l~~~~gi~~P~aDll~ 114 (214)
T PF09865_consen 86 ADAPGTIDAAIDYLRDKYGIELPLADLLY 114 (214)
T ss_pred ccCCCCHHHHHHHHHHhhCCCccHHHhcc
Confidence 45567999999999999998776555543
No 319
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=24.23 E-value=1.7e+02 Score=17.64 Aligned_cols=29 Identities=14% Similarity=0.245 Sum_probs=18.2
Q ss_pred EEEEeccCCcHHHHHHHhhhhcCCCCCcc
Q 032747 89 IEIDIEPTDTIERIKERVEEKEGIPPVQQ 117 (134)
Q Consensus 89 ~~~~V~~~~tV~~lK~~i~~~~gip~~~q 117 (134)
-...|++++|++.+-.-++++.++.+.+.
T Consensus 18 ~k~kI~~~~~f~~vi~fLrk~Lk~~~~~s 46 (87)
T PF04110_consen 18 KKFKISASQTFATVIAFLRKKLKLKPSDS 46 (87)
T ss_dssp -EEEEETTSBTHHHHHHHHHHCT----SS
T ss_pred cEEEECCCCchHHHHHHHHHHhCCccCCe
Confidence 45667888888888888887777755444
No 320
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=24.16 E-value=1.7e+02 Score=19.41 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=21.9
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHH
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK 27 (134)
+|++...+|....+++.++.|+-+.-
T Consensus 37 ~I~~~~~dG~~~~v~~~~G~sLLeal 62 (143)
T PTZ00490 37 KVCVKKRDGTHCDVEVPVGMSLMHAL 62 (143)
T ss_pred EEEEEcCCCCEEEEEECCCccHHHHH
Confidence 57788888999999999999987754
No 321
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=24.16 E-value=63 Score=16.28 Aligned_cols=12 Identities=33% Similarity=0.974 Sum_probs=8.7
Q ss_pred CCeEEEEEeccc
Q 032747 122 QSFILFYFSNKC 133 (134)
Q Consensus 122 ~g~~l~~~~~~~ 133 (134)
+|..+||.|..|
T Consensus 23 E~mT~fy~C~~C 34 (40)
T smart00440 23 EPMTVFYVCTKC 34 (40)
T ss_pred CCCeEEEEeCCC
Confidence 566778887766
No 322
>COG3900 Predicted periplasmic protein [Function unknown]
Probab=23.90 E-value=2.8e+02 Score=20.17 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=22.7
Q ss_pred eccCCcHHHHHHHhhhhcCCCCCcceEE
Q 032747 93 IEPTDTIERIKERVEEKEGIPPVQQRYP 120 (134)
Q Consensus 93 V~~~~tV~~lK~~i~~~~gip~~~q~L~ 120 (134)
++...|+.+|-.+|+.++|++..--.|.
T Consensus 121 ieapgTiD~lvdei~~kyG~~lp~adll 148 (262)
T COG3900 121 IEAPGTIDELVDEIDDKYGITLPGADLL 148 (262)
T ss_pred ccCCCcHHHHHHHHHhhcCCCccchhhh
Confidence 5666799999999999999987655443
No 323
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=23.20 E-value=2.1e+02 Score=18.10 Aligned_cols=27 Identities=7% Similarity=0.096 Sum_probs=21.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHH
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVK 27 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK 27 (134)
++|++...+|....+.+.++.|+.+.-
T Consensus 1 ~~V~fi~~~G~~~~v~~~~G~tLl~a~ 27 (117)
T PLN02593 1 ISVTFVDKDGEERTVKAPVGMSLLEAA 27 (117)
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHH
Confidence 467777788999999999998887654
No 324
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=22.52 E-value=1.9e+02 Score=17.41 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=19.8
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHH
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK 27 (134)
+|++..+++....+.+.++.|+.+.-
T Consensus 4 ~v~~~~~~~~~~~~~~~~g~tLLda~ 29 (97)
T TIGR02008 4 KVTLVNPDGGEETIECPDDQYILDAA 29 (97)
T ss_pred EEEEEECCCCEEEEEECCCCcHHHHH
Confidence 45565567778889999999987763
No 325
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=21.81 E-value=1.5e+02 Score=20.02 Aligned_cols=56 Identities=21% Similarity=0.313 Sum_probs=33.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhC----CCC---CceEEEEcCEEcCCCCCcc
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG----IPP---DQQRLIFAGKQLEDGRTLA 57 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g----i~~---~~q~L~~~g~~L~d~~~L~ 57 (134)
|.|.+ +.||+.+.++++|.+++.++-..--..+| ... .--.+.++|+......++.
T Consensus 2 ~~i~l-tvNG~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC~~g~CGACtVlvDG~~v~SCl~~a 64 (156)
T COG2080 2 MPITL-TVNGEPVELDVDPRTPLLDVLRDELGLTGTKKGCGHGQCGACTVLVDGEAVNSCLTLA 64 (156)
T ss_pred CcEEE-EECCeEEEEEeCCCChHHHHHHHhcCCCCcCCCCCCccCCceEEEECCeEehHHHHHH
Confidence 34555 35899999999999997776543333332 211 2346667777765444433
No 326
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=21.68 E-value=2e+02 Score=17.31 Aligned_cols=44 Identities=11% Similarity=0.219 Sum_probs=33.3
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCC-ceEEEEc
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA 46 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~-~q~L~~~ 46 (134)
++++.- +|..+...++++.|..+|.+++......... ...+.|-
T Consensus 2 ~~K~~y-~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~ 46 (83)
T cd06404 2 RVKAAY-NGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWI 46 (83)
T ss_pred eEEEEe-cCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 344433 6788889999999999999999999887653 4455554
No 327
>COG5131 URM1 Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.48 E-value=2.1e+02 Score=17.53 Aligned_cols=64 Identities=19% Similarity=0.343 Sum_probs=35.3
Q ss_pred CEEEEEEc--CCCcHHHHHHHHHhhhCCCCCceEE-EEcCEE------c-C--CCCCccc--cccccccceEEEEEeec
Q 032747 11 KTITLEVE--SSDTIDNVKAKIQDKEGIPPDQQRL-IFAGKQ------L-E--DGRTLAD--YNIQKESTLHLVLRLRG 75 (134)
Q Consensus 11 ~~~~~~v~--~~~tv~~lK~~i~~~~gi~~~~q~L-~~~g~~------L-~--d~~~L~~--~~i~~~~~i~l~~~~~~ 75 (134)
+.+.+.++ ...+|+.+-+.+.... ..|.+-.+ ..+|.. | . |-..+.. |.+.+|+.|.+.-+..|
T Consensus 18 R~~el~~~~~e~~~vg~liD~~~~~i-~~p~~~sifie~g~lrpGiI~LINd~DWeLleke~y~ledgDiIvfistlHG 95 (96)
T COG5131 18 REIELTREEVEGSSVGTLIDALRYFI-YAPTRDSIFIEHGELRPGIICLINDMDWELLEKERYPLEDGDIIVFISTLHG 95 (96)
T ss_pred eeeEEEEcccCCcchhhHHHHHHHHH-hCCccceeeecCCCCcccEEEEEcCccHhhhhcccccCCCCCEEEEEecccC
Confidence 43455554 4567888888887732 22322222 233321 2 2 3334555 88899998877655443
No 328
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=20.93 E-value=1.9e+02 Score=16.88 Aligned_cols=46 Identities=7% Similarity=0.138 Sum_probs=29.2
Q ss_pred HHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEE
Q 032747 24 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (134)
Q Consensus 24 ~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l 69 (134)
..++..++..+|.+.+.-++-.+...=.-...++.-.+.-|..|++
T Consensus 4 ~~~r~~~e~~~G~dl~~Vrvh~~~~a~~~~~~~~A~A~T~G~~I~f 49 (79)
T PF13699_consen 4 ESIRSRLERAFGADLSDVRVHTGPAASRAAAALGARAFTVGNDIYF 49 (79)
T ss_pred HHHHHHHHHHhCCCccceEEEeCCchhhhhhccCCeEEEECCEEEE
Confidence 3578899999998888888877733211122344444455666765
No 329
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=20.87 E-value=3e+02 Score=23.65 Aligned_cols=64 Identities=14% Similarity=0.255 Sum_probs=44.9
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEee
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (134)
+|+|=+++|+ .+.++.+.|+-|+--.|+...|--. .--..+|+... -++.+++|++|.+.....
T Consensus 405 ~V~VfTPkG~--~~~Lp~gaT~lDfAy~iHt~iG~~~--~gAkvng~~v~-----l~~~L~~GD~VeIits~~ 468 (743)
T PRK10872 405 RVYVFTPKGD--VVDLPAGSTPLDFAYHIHSDVGHRC--IGAKIGGRIVP-----FTYQLQMGDQIEIITQKQ 468 (743)
T ss_pred eEEEECCCCC--eEEcCCCCcHHHHHHHHhHHHHhhc--eEEEECCEECC-----CCcCCCCCCEEEEEeCCC
Confidence 4778788887 4677899999999999988876332 11236676543 456677899998876543
No 330
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=20.68 E-value=1.3e+02 Score=18.71 Aligned_cols=25 Identities=24% Similarity=0.503 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhhCCCCCceEEEEcC
Q 032747 23 IDNVKAKIQDKEGIPPDQQRLIFAG 47 (134)
Q Consensus 23 v~~lK~~i~~~~gi~~~~q~L~~~g 47 (134)
-..|-+.++++.|+|+++.-+.|..
T Consensus 76 s~~i~~~l~~~LgIp~~Riyi~f~d 100 (114)
T PF01187_consen 76 SAAITEFLEEELGIPPDRIYINFHD 100 (114)
T ss_dssp HHHHHHHHHHHHT--GGGEEEEEEE
T ss_pred HHHHHHHHHHHhCCCcCceEEEEEE
Confidence 4566677788899999999888753
No 331
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=20.45 E-value=1.1e+02 Score=19.29 Aligned_cols=27 Identities=26% Similarity=0.634 Sum_probs=14.0
Q ss_pred HHHHHHHHhhhCCCCCceEEEEcCEEcC
Q 032747 24 DNVKAKIQDKEGIPPDQQRLIFAGKQLE 51 (134)
Q Consensus 24 ~~lK~~i~~~~gi~~~~q~L~~~g~~L~ 51 (134)
...|+.+.+ .|+++++..++++|-.++
T Consensus 148 ~~~~~~l~~-~~~~~~ki~vI~ngid~~ 174 (177)
T PF13439_consen 148 ESTKDELIK-FGIPPEKIHVIYNGIDTD 174 (177)
T ss_dssp HHHHHHHHH-HT--SS-EEE----B-CC
T ss_pred HHHHHHHHH-hCCcccCCEEEECCccHH
Confidence 356777777 889988899999987654
No 332
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=20.38 E-value=1.3e+02 Score=17.52 Aligned_cols=54 Identities=13% Similarity=0.174 Sum_probs=23.4
Q ss_pred ccccccccccceEEEEEeecceeeeeee-cCCcEEE------EEeccCCcHHHHHHHhhhhcC
Q 032747 56 LADYNIQKESTLHLVLRLRGGTMIKVKT-LTGKEIE------IDIEPTDTIERIKERVEEKEG 111 (134)
Q Consensus 56 L~~~~i~~~~~i~l~~~~~~~~~i~v~~-~~~~~~~------~~V~~~~tV~~lK~~i~~~~g 111 (134)
-.+|-+.+|+.|.+.+.........+.. .+| .+. +.|. ..|+.+++..|..+..
T Consensus 8 ~~~y~l~pGD~l~i~v~~~~~l~~~~~V~~dG-~I~lP~iG~v~v~-G~T~~e~~~~I~~~l~ 68 (82)
T PF02563_consen 8 PPEYRLGPGDVLRISVFGWPELSGEYTVDPDG-TISLPLIGPVKVA-GLTLEEAEEEIKQRLQ 68 (82)
T ss_dssp T------TT-EEEEEETT-HHHCCSEE--TTS-EEEETTTEEEE-T-T--HHHHHHHHHHHHT
T ss_pred CCCCEECCCCEEEEEEecCCCcccceEECCCC-cEeecccceEEEC-CCCHHHHHHHHHHHHH
Confidence 3567778888888777543222111221 122 222 3333 6699999999987654
No 333
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=20.36 E-value=1.2e+02 Score=14.56 Aligned_cols=18 Identities=17% Similarity=0.433 Sum_probs=11.5
Q ss_pred CCcHHHHHHHHHhhhCCCC
Q 032747 20 SDTIDNVKAKIQDKEGIPP 38 (134)
Q Consensus 20 ~~tv~~lK~~i~~~~gi~~ 38 (134)
..|+.+||+.. ...|++.
T Consensus 3 ~l~v~eLk~~l-~~~gL~~ 20 (35)
T PF02037_consen 3 KLTVAELKEEL-KERGLST 20 (35)
T ss_dssp TSHHHHHHHHH-HHTTS-S
T ss_pred cCcHHHHHHHH-HHCCCCC
Confidence 56889999644 4456665
No 334
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=20.01 E-value=3.8e+02 Score=20.43 Aligned_cols=34 Identities=18% Similarity=0.368 Sum_probs=23.5
Q ss_pred EEEc-CCCcHHHHHHHHHhhh--CCCCCceEEEEcCE
Q 032747 15 LEVE-SSDTIDNVKAKIQDKE--GIPPDQQRLIFAGK 48 (134)
Q Consensus 15 ~~v~-~~~tv~~lK~~i~~~~--gi~~~~q~L~~~g~ 48 (134)
+.++ -+.+|.|||..|-.+. |-..+-+-|+|+|.
T Consensus 18 I~FdGTGl~vfdlKrEII~q~Klg~g~DFdLl~yn~~ 54 (427)
T COG5222 18 ISFDGTGLPVFDLKREIINQRKLGSGKDFDLLFYNGE 54 (427)
T ss_pred eEeccCCccHHHHHHHHHHhhhccCCccceEEEecCC
Confidence 4444 3689999999997754 33345667778874
Done!