Query 032747
Match_columns 134
No_of_seqs 209 out of 1563
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 08:25:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032747.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032747hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rt3_B Ubiquitin-like protein 100.0 1.3E-34 4.5E-39 194.4 15.6 129 1-129 3-134 (159)
2 3u30_A Ubiquitin, linear DI-ub 100.0 3.4E-34 1.2E-38 194.7 15.3 128 1-128 21-148 (172)
3 3b08_A Polyubiquitin-C, ubiqui 100.0 6.1E-33 2.1E-37 184.6 16.0 128 1-128 1-128 (152)
4 2kdi_A Ubiquitin, vacuolar pro 99.9 6.8E-25 2.3E-29 139.6 3.1 100 1-100 10-112 (114)
5 1yx5_B Ubiquitin; proteasome, 99.9 1.4E-22 4.9E-27 125.6 9.8 91 1-91 1-91 (98)
6 4fbj_B NEDD8; effector-HOST ta 99.9 2.9E-22 1E-26 122.0 9.0 79 1-79 1-79 (88)
7 3phx_B Ubiquitin-like protein 99.9 5.5E-22 1.9E-26 118.3 9.5 75 1-75 5-79 (79)
8 1ndd_A NEDD8, protein (ubiquit 99.9 1.6E-21 5.5E-26 115.1 9.5 76 1-76 1-76 (76)
9 3plu_A Ubiquitin-like modifier 99.9 1.9E-21 6.6E-26 118.1 9.4 71 1-71 22-92 (93)
10 3a9j_A Ubiquitin; protein comp 99.9 2.8E-21 9.6E-26 114.1 9.8 76 1-76 1-76 (76)
11 3k9o_B Ubiquitin, UBB+1; E2-25 99.9 4.9E-21 1.7E-25 118.1 9.8 79 1-79 2-80 (96)
12 4hcn_B Polyubiquitin, ubiquiti 99.9 3.6E-21 1.2E-25 119.3 9.1 76 1-76 23-98 (98)
13 1sif_A Ubiquitin; hydrophobic 99.9 4.4E-21 1.5E-25 116.7 9.0 77 1-77 10-86 (88)
14 3n3k_B Ubiquitin; hydrolase, p 99.9 3.5E-21 1.2E-25 116.1 8.5 77 1-77 4-80 (85)
15 3dbh_I NEDD8; cell cycle, acti 99.9 2.3E-21 7.9E-26 117.7 7.6 76 1-76 13-88 (88)
16 2uyz_B Small ubiquitin-related 99.8 3.3E-21 1.1E-25 114.9 7.9 76 1-76 4-79 (79)
17 2kk8_A Uncharacterized protein 99.8 4.7E-21 1.6E-25 115.7 8.6 72 1-72 11-83 (84)
18 3mtn_B UBA80, ubcep1, ubiquiti 99.8 7.7E-21 2.6E-25 114.6 8.7 77 1-77 4-80 (85)
19 2hj8_A Interferon-induced 17 k 99.8 3.4E-21 1.2E-25 117.2 7.2 78 1-78 5-82 (88)
20 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 7.5E-21 2.6E-25 115.3 8.4 77 1-77 8-84 (87)
21 3l0w_B Monoubiquitinated proli 99.8 1.3E-20 4.3E-25 127.4 10.2 83 1-83 1-83 (169)
22 1wy8_A NP95-like ring finger p 99.8 1.2E-20 4.1E-25 114.9 9.1 78 1-78 8-87 (89)
23 4dwf_A HLA-B-associated transc 99.8 1.7E-20 5.7E-25 114.5 9.5 75 1-76 6-80 (90)
24 3v6c_B Ubiquitin; structural g 99.8 1.2E-20 4.2E-25 115.4 8.5 73 1-73 18-90 (91)
25 2faz_A Ubiquitin-like containi 99.8 1.8E-20 6.1E-25 111.4 8.7 73 1-73 3-77 (78)
26 3vdz_A Ubiquitin-40S ribosomal 99.8 2.1E-20 7.1E-25 118.3 9.3 76 1-76 36-111 (111)
27 2kan_A Uncharacterized protein 99.8 2E-20 6.8E-25 115.1 8.6 76 1-77 16-92 (94)
28 1wyw_B Ubiquitin-like protein 99.8 1.4E-20 4.8E-25 116.5 7.8 76 1-76 22-97 (97)
29 3q3f_A Ribonuclease/ubiquitin 99.8 9.2E-21 3.1E-25 129.7 7.5 83 1-83 106-188 (189)
30 1uh6_A Ubiquitin-like 5; beta- 99.8 1.2E-20 4.1E-25 116.6 7.1 71 1-71 29-99 (100)
31 4eew_A Large proline-rich prot 99.8 4.2E-20 1.4E-24 112.2 9.4 71 1-72 18-88 (88)
32 2lxa_A Ubiquitin-like protein 99.8 1.5E-20 5.2E-25 113.9 7.3 73 1-73 2-78 (87)
33 1uel_A HHR23B, UV excision rep 99.8 6.5E-20 2.2E-24 113.0 10.0 74 1-74 1-77 (95)
34 2dzi_A Ubiquitin-like protein 99.8 4.8E-20 1.6E-24 110.1 9.0 73 1-73 8-80 (81)
35 2l7r_A Ubiquitin-like protein 99.8 3.1E-20 1.1E-24 114.1 7.6 74 1-76 20-93 (93)
36 2wyq_A HHR23A, UV excision rep 99.8 1.2E-19 4.2E-24 109.4 9.5 74 1-74 6-82 (85)
37 2ojr_A Ubiquitin; lanthide-bin 99.8 1.5E-19 5.2E-24 114.4 9.7 76 1-76 36-111 (111)
38 3m62_B UV excision repair prot 99.8 4.8E-20 1.7E-24 115.8 7.2 74 1-74 2-75 (106)
39 3b1l_X E3 ubiquitin-protein li 99.7 1.4E-21 4.7E-26 115.7 0.0 75 1-75 1-75 (76)
40 1wgd_A Homocysteine-responsive 99.8 7.6E-20 2.6E-24 112.3 7.7 77 1-77 8-90 (93)
41 4a20_A Ubiquitin-like protein 99.8 1.2E-19 4.2E-24 112.2 8.5 73 1-73 20-96 (98)
42 2bwf_A Ubiquitin-like protein 99.8 1.9E-19 6.4E-24 106.6 8.9 71 1-72 5-75 (77)
43 3rt3_B Ubiquitin-like protein 99.8 2.5E-19 8.5E-24 119.8 9.3 77 1-77 82-158 (159)
44 1yqb_A Ubiquilin 3; structural 99.8 2.2E-19 7.6E-24 111.6 7.8 76 1-77 23-98 (100)
45 1wx8_A Riken cDNA 4931431F19; 99.8 1.2E-19 4.1E-24 112.0 5.7 76 1-77 18-93 (96)
46 1ttn_A DC-UBP, dendritic cell- 99.8 2.7E-19 9.3E-24 112.3 7.1 75 1-75 24-98 (106)
47 2klc_A Ubiquilin-1; ubiquitin- 99.8 9.2E-19 3.2E-23 109.0 9.4 74 1-75 26-99 (101)
48 1j8c_A Ubiquitin-like protein 99.8 9.6E-19 3.3E-23 112.8 9.7 76 1-77 33-108 (125)
49 3u5e_m 60S ribosomal protein L 99.8 8.7E-21 3E-25 122.9 0.0 77 1-77 1-77 (128)
50 1we6_A Splicing factor, putati 99.8 2.1E-19 7.2E-24 113.7 6.4 77 1-77 28-108 (111)
51 2fnj_B Transcription elongatio 99.8 5.5E-19 1.9E-23 112.0 8.1 75 1-76 1-83 (118)
52 4ajy_B Transcription elongatio 99.8 1.2E-18 4E-23 110.2 8.8 75 1-75 1-83 (118)
53 1wx7_A Ubiquilin 3; ubiquitin- 99.8 9.5E-19 3.3E-23 109.8 8.2 76 1-77 18-93 (106)
54 1v2y_A 3300001G02RIK protein; 99.8 2.9E-19 1E-23 111.5 5.2 76 1-76 8-99 (105)
55 1v5o_A 1700011N24RIK protein; 99.8 8.9E-19 3.1E-23 109.2 7.0 77 1-77 8-89 (102)
56 1wju_A NEDD8 ultimate buster-1 99.8 1.5E-18 5.1E-23 107.2 7.7 72 2-74 17-92 (100)
57 3u5c_f 40S ribosomal protein S 99.8 2.8E-20 9.7E-25 123.5 0.0 77 1-77 1-77 (152)
58 1we7_A SF3A1 protein; structur 99.8 2.4E-18 8.4E-23 109.4 7.9 77 1-77 26-112 (115)
59 3b08_A Polyubiquitin-C, ubiqui 99.8 5.6E-18 1.9E-22 112.1 9.5 76 1-76 77-152 (152)
60 3u30_A Ubiquitin, linear DI-ub 99.7 3.1E-18 1E-22 115.9 7.8 76 1-76 97-172 (172)
61 4dbg_A Ranbp-type and C3HC4-ty 99.7 9.2E-18 3.2E-22 104.4 9.1 72 1-72 25-99 (105)
62 1se9_A Ubiquitin family; ubiqu 99.7 8.3E-18 2.8E-22 107.8 9.1 78 1-78 17-108 (126)
63 3m63_B Ubiquitin domain-contai 99.7 8.1E-19 2.8E-23 109.2 4.2 71 1-72 29-99 (101)
64 1wgh_A Ubiquitin-like 3, HCG-1 99.7 1.2E-17 4E-22 106.0 9.2 74 1-74 17-100 (116)
65 2kd0_A LRR repeats and ubiquit 99.7 1.2E-17 4.1E-22 100.8 8.1 70 3-72 14-83 (85)
66 2gow_A HCG-1 protein, ubiquiti 99.7 9.9E-18 3.4E-22 107.7 7.5 76 1-76 18-103 (125)
67 2kdb_A Homocysteine-responsive 99.7 7.1E-18 2.4E-22 104.4 6.6 69 1-69 24-98 (99)
68 2daf_A FLJ35834 protein; hypot 99.7 2.2E-17 7.7E-22 103.8 8.6 73 2-74 17-90 (118)
69 1v5t_A 8430435I17RIK protein; 99.7 9.4E-18 3.2E-22 102.3 6.7 72 1-73 8-83 (90)
70 1wia_A Hypothetical ubiquitin- 99.7 2E-17 6.9E-22 101.7 7.4 72 1-75 8-80 (95)
71 1x1m_A Ubiquitin-like protein 99.7 1.8E-17 6.2E-22 104.1 7.3 74 1-74 13-101 (107)
72 1wgg_A Ubiquitin carboxyl-term 99.7 2.1E-17 7E-22 102.0 6.5 71 1-73 8-79 (96)
73 1wxv_A BAG-family molecular ch 99.7 4.2E-17 1.4E-21 99.7 7.7 72 1-73 8-85 (92)
74 2dzj_A Synaptic glycoprotein S 99.7 4.3E-17 1.5E-21 99.0 5.6 69 1-69 11-85 (88)
75 1v86_A DNA segment, CHR 7, way 99.7 2.2E-17 7.5E-22 101.6 3.6 71 1-73 18-88 (95)
76 4b6w_A Tubulin-specific chaper 99.7 1.6E-16 5.5E-21 96.0 6.5 73 2-74 4-85 (86)
77 3ai5_A Yeast enhanced green fl 99.7 2.6E-16 8.7E-21 114.7 8.8 73 1-73 234-306 (307)
78 2dzm_A FAS-associated factor 1 99.7 1E-16 3.5E-21 99.2 5.7 72 1-73 9-82 (100)
79 2xzm_9 RPS31E; ribosome, trans 99.7 6.2E-18 2.1E-22 115.2 0.0 73 1-78 1-73 (189)
80 2kjr_A CG11242; UBL, ubiquitin 99.7 5.8E-16 2E-20 95.2 8.6 69 2-70 17-93 (95)
81 2io1_B Small ubiquitin-related 99.6 1.2E-15 4E-20 93.6 8.9 77 1-77 8-84 (94)
82 2kj6_A Tubulin folding cofacto 99.6 1.3E-15 4.6E-20 93.8 7.2 71 2-72 16-95 (97)
83 1oqy_A HHR23A, UV excision rep 99.6 8.4E-16 2.9E-20 114.7 6.9 76 1-76 8-87 (368)
84 2io0_B Small ubiquitin-related 99.6 6.7E-15 2.3E-19 89.6 9.1 77 1-77 6-82 (91)
85 1wf9_A NPL4 family protein; be 99.6 7.6E-16 2.6E-20 96.7 4.2 71 1-72 8-94 (107)
86 1v6e_A Cytoskeleton-associated 99.6 3.8E-15 1.3E-19 91.6 7.0 70 2-71 9-86 (95)
87 4eew_A Large proline-rich prot 99.6 3.2E-15 1.1E-19 90.5 6.3 69 60-128 1-69 (88)
88 3plu_A Ubiquitin-like modifier 99.6 3.9E-15 1.4E-19 90.3 6.2 58 72-129 17-74 (93)
89 2d07_B Ubiquitin-like protein 99.6 1.9E-14 6.3E-19 88.1 9.1 76 1-76 18-93 (93)
90 1t0y_A Tubulin folding cofacto 99.6 1.6E-14 5.4E-19 92.6 8.5 73 1-73 7-87 (122)
91 1wm3_A Ubiquitin-like protein 99.6 2.5E-14 8.6E-19 83.6 8.5 70 1-70 2-71 (72)
92 2kzr_A Ubiquitin thioesterase 99.5 5.8E-15 2E-19 89.1 5.3 71 1-72 1-77 (86)
93 1wz0_A Ubiquitin-like protein 99.5 3.1E-14 1.1E-18 88.7 6.5 77 1-77 25-101 (104)
94 2eke_C Ubiquitin-like protein 99.5 9.7E-14 3.3E-18 86.6 8.5 75 1-76 32-106 (106)
95 3a4r_A Nfatc2-interacting prot 99.5 1.7E-13 5.7E-18 81.4 8.6 70 1-70 8-78 (79)
96 2k8h_A Small ubiquitin protein 99.5 3.8E-14 1.3E-18 89.0 5.8 78 1-78 27-104 (110)
97 3shq_A UBLCP1; phosphatase, hy 99.5 2.9E-14 9.8E-19 104.9 5.6 74 1-75 6-82 (320)
98 1uh6_A Ubiquitin-like 5; beta- 99.5 1E-13 3.5E-18 85.5 5.9 52 77-128 29-80 (100)
99 2lxa_A Ubiquitin-like protein 99.5 8.1E-14 2.8E-18 84.2 5.3 53 77-129 2-57 (87)
100 3phx_B Ubiquitin-like protein 99.4 2.1E-13 7.2E-18 80.7 6.3 54 75-128 3-56 (79)
101 2kk8_A Uncharacterized protein 99.4 4.8E-13 1.6E-17 80.3 6.3 53 76-128 10-63 (84)
102 1wjn_A Tubulin-folding protein 99.4 9.3E-13 3.2E-17 81.1 7.7 71 2-72 11-92 (97)
103 4dwf_A HLA-B-associated transc 99.4 7.5E-13 2.5E-17 80.2 6.2 54 75-128 4-57 (90)
104 4fbj_B NEDD8; effector-HOST ta 99.4 7.8E-13 2.7E-17 80.0 6.1 52 77-128 1-52 (88)
105 3m63_B Ubiquitin domain-contai 99.4 2.7E-13 9.4E-18 84.1 3.7 73 53-128 7-79 (101)
106 4a20_A Ubiquitin-like protein 99.4 1.2E-12 4E-17 80.7 6.5 55 74-128 17-74 (98)
107 2faz_A Ubiquitin-like containi 99.4 1.1E-12 3.9E-17 77.3 6.0 54 75-128 1-56 (78)
108 2hj8_A Interferon-induced 17 k 99.4 1.1E-12 3.7E-17 79.3 5.9 54 75-128 3-56 (88)
109 1sif_A Ubiquitin; hydrophobic 99.4 1.3E-12 4.6E-17 78.9 6.1 54 75-128 8-61 (88)
110 3v6c_B Ubiquitin; structural g 99.3 2.1E-12 7.3E-17 78.4 6.4 55 75-129 16-70 (91)
111 1wh3_A 59 kDa 2'-5'-oligoadeny 99.3 3.6E-12 1.2E-16 76.6 7.0 55 74-128 5-59 (87)
112 2kan_A Uncharacterized protein 99.3 4.2E-12 1.4E-16 77.7 7.2 54 75-129 14-67 (94)
113 3dbh_I NEDD8; cell cycle, acti 99.3 2.7E-12 9.1E-17 77.3 6.2 54 75-128 11-64 (88)
114 1wju_A NEDD8 ultimate buster-1 99.3 3E-12 1E-16 78.9 6.2 43 86-128 29-71 (100)
115 2wyq_A HHR23A, UV excision rep 99.3 4.5E-12 1.5E-16 75.9 6.6 55 74-128 3-60 (85)
116 2uyz_B Small ubiquitin-related 99.3 3.2E-12 1.1E-16 75.5 5.8 52 77-128 4-55 (79)
117 3k9o_B Ubiquitin, UBB+1; E2-25 99.3 3.6E-12 1.2E-16 78.0 6.0 54 76-129 1-54 (96)
118 1wyw_B Ubiquitin-like protein 99.3 3.4E-12 1.1E-16 78.5 5.9 55 74-128 19-73 (97)
119 3m62_B UV excision repair prot 99.3 2.7E-12 9.4E-17 80.2 5.5 52 77-128 2-53 (106)
120 2dzi_A Ubiquitin-like protein 99.3 8.2E-12 2.8E-16 74.0 7.1 54 75-128 6-59 (81)
121 4hcn_B Polyubiquitin, ubiquiti 99.3 4.8E-12 1.6E-16 78.0 6.1 54 75-128 21-74 (98)
122 1ndd_A NEDD8, protein (ubiquit 99.3 5.6E-12 1.9E-16 73.6 5.9 52 77-128 1-52 (76)
123 3kyd_D Small ubiquitin-related 99.3 2.5E-11 8.7E-16 76.4 9.1 73 1-73 41-113 (115)
124 1wgh_A Ubiquitin-like 3, HCG-1 99.3 1E-11 3.6E-16 78.6 7.2 55 75-129 15-77 (116)
125 2fnj_B Transcription elongatio 99.3 4.7E-12 1.6E-16 80.2 5.6 51 78-128 2-53 (118)
126 3mtn_B UBA80, ubcep1, ubiquiti 99.3 8.6E-12 2.9E-16 74.5 6.3 53 76-128 3-55 (85)
127 2kdb_A Homocysteine-responsive 99.3 1.1E-11 3.8E-16 76.5 6.8 54 75-128 22-79 (99)
128 3n3k_B Ubiquitin; hydrolase, p 99.3 6.7E-12 2.3E-16 75.0 5.4 54 76-129 3-56 (85)
129 1wy8_A NP95-like ring finger p 99.3 1.5E-11 5.3E-16 74.2 7.1 54 75-128 6-61 (89)
130 1uel_A HHR23B, UV excision rep 99.3 1.2E-11 4.1E-16 75.7 6.6 52 77-128 1-55 (95)
131 3a9j_A Ubiquitin; protein comp 99.3 1.2E-11 4E-16 72.3 6.0 52 77-128 1-52 (76)
132 4ajy_B Transcription elongatio 99.2 9.8E-12 3.3E-16 78.5 5.6 52 78-129 2-54 (118)
133 1wgd_A Homocysteine-responsive 99.2 1.6E-11 5.5E-16 74.8 6.4 54 75-128 6-63 (93)
134 3vdz_A Ubiquitin-40S ribosomal 99.2 1.4E-11 4.9E-16 77.5 6.3 53 76-128 35-87 (111)
135 2xzm_9 RPS31E; ribosome, trans 99.2 6.5E-13 2.2E-17 90.5 0.0 53 77-129 1-53 (189)
136 1ttn_A DC-UBP, dendritic cell- 99.2 1.9E-11 6.6E-16 76.3 6.7 54 75-128 22-75 (106)
137 2kdi_A Ubiquitin, vacuolar pro 99.2 1.5E-11 5E-16 77.8 6.2 54 75-128 8-61 (114)
138 2bwf_A Ubiquitin-like protein 99.2 1.8E-11 6.3E-16 71.7 6.2 51 77-128 5-55 (77)
139 2gow_A HCG-1 protein, ubiquiti 99.2 9.1E-12 3.1E-16 79.9 5.1 53 77-129 18-78 (125)
140 2ojr_A Ubiquitin; lanthide-bin 99.2 1.2E-11 3.9E-16 77.9 5.4 53 76-128 35-87 (111)
141 2l7r_A Ubiquitin-like protein 99.2 1.6E-11 5.4E-16 75.0 5.7 53 74-128 17-69 (93)
142 1yx5_B Ubiquitin; proteasome, 99.2 2.1E-11 7.1E-16 75.0 6.1 52 77-128 1-52 (98)
143 3q3f_A Ribonuclease/ubiquitin 99.2 2.6E-11 8.9E-16 82.9 6.9 56 73-128 102-157 (189)
144 3l0w_B Monoubiquitinated proli 99.2 2.5E-11 8.6E-16 81.7 6.6 52 77-128 1-52 (169)
145 2klc_A Ubiquilin-1; ubiquitin- 99.2 3.9E-11 1.3E-15 74.3 6.7 58 70-128 19-76 (101)
146 3b1l_X E3 ubiquitin-protein li 98.8 1.5E-12 5.1E-17 76.4 0.0 53 77-129 1-53 (76)
147 1se9_A Ubiquitin family; ubiqu 99.2 3.5E-11 1.2E-15 77.0 6.3 55 75-129 15-77 (126)
148 4dbg_A Ranbp-type and C3HC4-ty 99.2 5.7E-11 2E-15 73.7 6.8 51 77-127 25-77 (105)
149 1wx8_A Riken cDNA 4931431F19; 99.2 4.9E-11 1.7E-15 73.0 6.1 52 76-128 17-68 (96)
150 1v5o_A 1700011N24RIK protein; 99.2 7.2E-11 2.5E-15 73.2 6.9 54 76-129 7-64 (102)
151 1v2y_A 3300001G02RIK protein; 99.2 1.5E-11 5.2E-16 76.5 3.8 51 77-127 8-73 (105)
152 1we6_A Splicing factor, putati 99.2 3.8E-11 1.3E-15 75.5 5.6 56 73-128 24-83 (111)
153 1yqb_A Ubiquilin 3; structural 99.2 4.9E-11 1.7E-15 73.7 5.7 53 75-128 21-73 (100)
154 2kd0_A LRR repeats and ubiquit 99.2 8.8E-11 3E-15 70.4 6.7 50 79-128 14-63 (85)
155 1wgg_A Ubiquitin carboxyl-term 99.2 7.2E-11 2.5E-15 72.4 6.0 51 77-128 8-59 (96)
156 1v5t_A 8430435I17RIK protein; 99.1 9.7E-11 3.3E-15 71.0 6.2 52 76-128 7-62 (90)
157 3pge_A SUMO-modified prolifera 99.1 2.8E-10 9.7E-15 78.2 9.0 76 1-77 30-105 (200)
158 1j8c_A Ubiquitin-like protein 99.1 1.7E-10 5.8E-15 74.0 7.2 52 76-128 32-83 (125)
159 3u5e_m 60S ribosomal protein L 99.1 5E-12 1.7E-16 81.5 0.0 53 77-129 1-53 (128)
160 3tix_A Ubiquitin-like protein 99.1 1.7E-10 5.9E-15 78.2 6.7 76 1-77 58-133 (207)
161 1v86_A DNA segment, CHR 7, way 99.1 8.7E-11 3E-15 71.9 4.7 49 77-126 18-66 (95)
162 2dzm_A FAS-associated factor 1 99.1 2.2E-10 7.5E-15 70.7 6.4 48 77-124 9-58 (100)
163 1wx7_A Ubiquilin 3; ubiquitin- 99.1 2.2E-10 7.5E-15 71.4 6.4 51 77-128 18-68 (106)
164 3u5c_f 40S ribosomal protein S 99.1 8.9E-12 3E-16 82.5 0.0 53 77-129 1-53 (152)
165 1wxv_A BAG-family molecular ch 99.1 4E-10 1.4E-14 68.4 7.4 52 76-128 7-63 (92)
166 1we7_A SF3A1 protein; structur 99.1 3.7E-10 1.3E-14 71.4 7.1 45 84-128 43-87 (115)
167 3goe_A DNA repair protein RAD6 99.1 1.6E-09 5.4E-14 62.9 8.6 70 2-71 11-81 (82)
168 2kjr_A CG11242; UBL, ubiquitin 99.1 3.4E-10 1.2E-14 69.3 6.0 46 77-122 16-63 (95)
169 2dzj_A Synaptic glycoprotein S 99.0 4E-10 1.4E-14 68.0 4.7 51 77-127 11-67 (88)
170 2pjh_A Protein NPL4, nuclear p 99.0 1.8E-10 6.3E-15 68.3 2.8 69 1-70 5-78 (80)
171 2kj6_A Tubulin folding cofacto 99.0 1E-09 3.5E-14 67.4 6.2 45 79-123 17-63 (97)
172 1x1m_A Ubiquitin-like protein 99.0 1.1E-09 3.8E-14 68.3 6.0 53 76-128 12-79 (107)
173 3ai5_A Yeast enhanced green fl 99.0 1.4E-09 4.9E-14 79.2 7.1 55 74-128 231-285 (307)
174 1wia_A Hypothetical ubiquitin- 99.0 1.6E-09 5.6E-14 66.0 6.2 52 75-129 6-57 (95)
175 3v7o_A Minor nucleoprotein VP3 98.9 9.6E-11 3.3E-15 80.4 0.1 78 1-79 22-99 (227)
176 2daf_A FLJ35834 protein; hypot 98.9 3.3E-09 1.1E-13 66.7 6.5 51 78-128 17-68 (118)
177 1oqy_A HHR23A, UV excision rep 98.9 1.7E-09 5.9E-14 80.7 5.7 54 75-128 6-62 (368)
178 2jxx_A Nfatc2-interacting prot 98.9 1.6E-08 5.5E-13 61.8 8.6 70 1-70 26-96 (97)
179 4b6w_A Tubulin-specific chaper 98.8 4.6E-09 1.6E-13 63.0 5.0 40 83-122 11-50 (86)
180 1v6e_A Cytoskeleton-associated 98.8 6.7E-09 2.3E-13 63.4 5.6 46 78-123 9-55 (95)
181 1wf9_A NPL4 family protein; be 98.8 4.6E-09 1.6E-13 65.5 4.9 47 77-124 8-55 (107)
182 4efo_A Serine/threonine-protei 98.8 1E-08 3.5E-13 62.1 6.0 45 82-126 19-63 (94)
183 1t0y_A Tubulin folding cofacto 98.8 1.6E-08 5.6E-13 64.4 6.0 47 77-123 7-54 (122)
184 2io1_B Small ubiquitin-related 98.7 3.8E-08 1.3E-12 59.9 5.8 52 77-128 8-59 (94)
185 2kzr_A Ubiquitin thioesterase 98.7 2.9E-08 9.8E-13 59.4 4.8 49 77-126 1-52 (86)
186 1wm3_A Ubiquitin-like protein 98.7 7.9E-08 2.7E-12 55.6 6.4 52 77-128 2-53 (72)
187 3uf8_A Ubiquitin-like protein 98.7 2.4E-07 8.3E-12 64.2 10.0 75 2-77 23-97 (209)
188 3shq_A UBLCP1; phosphatase, hy 98.7 1.8E-08 6.2E-13 74.0 4.4 51 77-128 6-59 (320)
189 2l76_A Nfatc2-interacting prot 98.6 2E-07 6.8E-12 56.3 7.9 70 2-72 23-92 (95)
190 3ix6_A TS, tsase, thymidylate 98.6 5.9E-09 2E-13 77.3 0.0 76 2-78 23-98 (360)
191 2io0_B Small ubiquitin-related 98.6 1.8E-07 6.2E-12 56.6 6.4 52 77-128 6-57 (91)
192 3a4r_A Nfatc2-interacting prot 98.5 3.6E-07 1.2E-11 53.8 6.9 52 77-128 8-60 (79)
193 4efo_A Serine/threonine-protei 98.5 6.5E-07 2.2E-11 54.2 7.7 53 9-61 22-76 (94)
194 3ivf_A Talin-1; FERM domain, c 98.5 4.5E-06 1.5E-10 62.3 13.9 109 2-114 5-123 (371)
195 2d07_B Ubiquitin-like protein 98.4 5.7E-07 1.9E-11 54.6 6.2 52 77-128 18-69 (93)
196 2al3_A TUG long isoform; TUG U 98.4 1.3E-06 4.4E-11 52.3 7.2 72 1-72 10-81 (90)
197 2k8h_A Small ubiquitin protein 98.4 5.5E-07 1.9E-11 56.3 5.7 52 77-128 27-78 (110)
198 1wz0_A Ubiquitin-like protein 98.4 6.8E-07 2.3E-11 55.3 5.6 52 77-128 25-76 (104)
199 4da1_A Protein phosphatase 1K, 98.3 6.2E-08 2.1E-12 72.9 0.0 79 2-81 32-110 (389)
200 2eke_C Ubiquitin-like protein 98.3 1.5E-06 5.1E-11 53.9 5.8 51 77-128 32-82 (106)
201 2kc2_A Talin-1, F1; FERM, adhe 98.3 1.4E-06 4.7E-11 55.7 5.4 71 2-72 13-122 (128)
202 1wjn_A Tubulin-folding protein 98.3 2.5E-06 8.6E-11 52.0 6.1 39 84-122 20-58 (97)
203 3qx1_A FAS-associated factor 1 98.1 3.7E-05 1.3E-09 45.5 8.6 69 2-71 9-82 (84)
204 3kyd_D Small ubiquitin-related 97.9 4.2E-05 1.4E-09 47.9 6.4 52 77-128 41-92 (115)
205 2bps_A YUKD protein; ubiquitin 97.9 5.9E-05 2E-09 44.4 6.4 68 2-69 6-80 (81)
206 2dzk_A UBX domain-containing p 97.8 0.00022 7.7E-09 44.2 8.4 70 2-71 15-89 (109)
207 1wj4_A KIAA0794 protein; UBX d 97.7 0.00027 9.3E-09 44.9 8.1 69 2-71 45-118 (124)
208 2al3_A TUG long isoform; TUG U 97.5 0.00031 1.1E-08 41.9 5.4 53 75-127 8-60 (90)
209 3pge_A SUMO-modified prolifera 97.4 0.0003 1E-08 48.2 5.7 51 77-128 30-80 (200)
210 2pjh_A Protein NPL4, nuclear p 97.3 0.00022 7.5E-09 41.8 3.7 45 77-122 5-49 (80)
211 2cr5_A Reproduction 8; UBX dom 97.2 0.0017 5.7E-08 40.2 6.9 70 2-72 25-98 (109)
212 3tix_A Ubiquitin-like protein 97.2 0.00096 3.3E-08 45.3 5.8 51 77-128 58-108 (207)
213 2ylm_A Ubiquitin carboxyl-term 97.1 0.015 5.1E-07 45.4 12.8 104 12-115 353-479 (530)
214 1s3s_G P47 protein; AAA ATPase 97.0 0.0019 6.4E-08 41.1 6.2 66 2-67 54-123 (127)
215 3uf8_A Ubiquitin-like protein 96.8 0.003 1E-07 43.5 5.8 51 76-127 21-71 (209)
216 3goe_A DNA repair protein RAD6 96.8 0.0037 1.2E-07 36.2 5.1 51 80-130 13-64 (82)
217 3v7o_A Minor nucleoprotein VP3 96.7 0.00026 8.9E-09 48.7 0.0 52 77-129 22-73 (227)
218 2daj_A KIAA0977 protein, COBL- 96.5 0.0049 1.7E-07 36.2 4.5 62 2-63 12-76 (91)
219 1ryj_A Unknown; beta/alpha pro 96.5 0.034 1.2E-06 31.3 8.0 62 1-72 5-66 (70)
220 4a3p_A Ubiquitin carboxyl-term 96.4 0.0099 3.4E-07 41.1 6.7 64 13-76 142-212 (217)
221 3jyu_A Ubiquitin carboxyl-term 96.4 0.019 6.4E-07 40.1 7.9 64 13-76 154-224 (231)
222 2jxx_A Nfatc2-interacting prot 96.4 0.02 6.7E-07 34.6 7.0 52 77-128 26-78 (97)
223 2l32_A Small archaeal modifier 96.3 0.024 8.1E-07 32.5 6.7 60 1-70 1-60 (74)
224 4e71_A Plexin-B2, MM1; transme 96.1 0.052 1.8E-06 33.5 7.8 62 10-71 23-109 (111)
225 2kc2_A Talin-1, F1; FERM, adhe 96.1 0.013 4.4E-07 37.3 5.1 38 78-115 13-50 (128)
226 1oey_A P67-PHOX, neutrophil cy 95.8 0.03 1E-06 32.8 5.6 44 2-47 7-50 (83)
227 2ylm_A Ubiquitin carboxyl-term 95.8 0.054 1.8E-06 42.3 8.6 109 13-122 38-182 (530)
228 2kvr_A Ubiquitin carboxyl-term 95.6 0.012 4.1E-07 37.5 3.8 32 89-120 58-89 (130)
229 3rpf_C Molybdopterin convertin 95.5 0.066 2.3E-06 30.3 6.4 70 1-75 1-73 (74)
230 2r2o_A Plexin-B1; effector dom 95.1 0.15 5.1E-06 32.6 7.5 63 11-73 41-129 (138)
231 2juo_A GA-binding protein alph 95.0 0.12 4E-06 30.2 6.2 59 13-71 5-63 (89)
232 2kvr_A Ubiquitin carboxyl-term 95.0 0.035 1.2E-06 35.3 4.4 34 13-46 58-91 (130)
233 1oey_A P67-PHOX, neutrophil cy 94.9 0.094 3.2E-06 30.7 5.6 45 79-123 6-50 (83)
234 1vjk_A Molybdopterin convertin 94.9 0.24 8.3E-06 29.5 7.8 66 1-71 10-93 (98)
235 3ix6_A TS, tsase, thymidylate 94.5 0.0064 2.2E-07 45.1 0.0 52 77-129 22-73 (360)
236 1tyg_B YJBS; alpha beta barrel 94.2 0.19 6.6E-06 29.6 6.0 57 9-72 26-83 (87)
237 3h6n_A Plexin-D1; structural g 93.6 0.81 2.8E-05 28.8 8.4 64 9-72 15-104 (127)
238 4e74_A Plexin-A4; RBD, structu 93.5 0.42 1.4E-05 29.7 6.9 62 11-72 27-114 (117)
239 2l76_A Nfatc2-interacting prot 93.4 0.3 1E-05 29.2 5.9 49 78-127 23-71 (95)
240 4da1_A Protein phosphatase 1K, 93.3 0.015 5E-07 43.5 0.0 51 78-129 32-82 (389)
241 3dwg_C 9.5 kDa culture filtrat 92.9 0.63 2.1E-05 27.3 6.9 73 1-75 1-92 (93)
242 3po0_A Small archaeal modifier 92.7 0.7 2.4E-05 26.8 6.9 59 11-74 18-87 (89)
243 1vd2_A Protein kinase C, IOTA 92.7 0.66 2.3E-05 27.4 6.6 40 9-48 14-54 (89)
244 1ef1_A Moesin; membrane, FERM 92.1 1.8 6.2E-05 30.6 9.6 71 1-72 2-78 (294)
245 1h4r_A Merlin; FERM, neurofibr 91.9 1.6 5.4E-05 31.3 9.2 70 2-72 24-98 (314)
246 1f0z_A THis protein; ubiquitin 91.7 0.3 1E-05 26.8 4.2 57 9-72 6-62 (66)
247 3qx1_A FAS-associated factor 1 91.5 0.78 2.7E-05 26.4 6.0 42 78-120 9-50 (84)
248 2kl0_A Putative thiamin biosyn 91.3 0.26 9E-06 27.9 3.6 65 1-76 1-65 (73)
249 2k5p_A THis protein, thiamine- 91.1 0.4 1.4E-05 27.5 4.3 66 1-76 1-69 (78)
250 3ivf_A Talin-1; FERM domain, c 90.9 1.5 5.1E-05 32.3 8.4 71 2-72 87-167 (371)
251 2kmm_A Guanosine-3',5'-BIS(dip 90.5 1.3 4.5E-05 24.4 6.5 61 1-70 1-61 (73)
252 2dzk_A UBX domain-containing p 90.4 1 3.4E-05 27.5 5.9 43 78-120 15-57 (109)
253 3qij_A Protein 4.1; cytoskelet 90.2 1.7 5.8E-05 31.0 7.9 60 1-60 18-83 (296)
254 2i1j_A Moesin; FERM, coiled-co 90.2 2.7 9.4E-05 33.0 9.6 71 1-72 5-81 (575)
255 1fm0_D Molybdopterin convertin 89.7 0.93 3.2E-05 25.6 5.2 56 11-72 17-77 (81)
256 2q5w_D Molybdopterin convertin 89.6 0.58 2E-05 26.3 4.1 55 11-71 16-72 (77)
257 4eut_A Serine/threonine-protei 88.6 0.65 2.2E-05 34.2 4.8 39 85-123 320-358 (396)
258 4eut_A Serine/threonine-protei 88.4 2.6 9E-05 30.8 8.1 50 11-60 322-373 (396)
259 1wj4_A KIAA0794 protein; UBX d 88.4 1.1 3.8E-05 28.0 5.2 49 77-126 44-94 (124)
260 3qa8_A MGC80376 protein; kinas 87.2 0.58 2E-05 37.6 4.0 41 84-124 319-359 (676)
261 3kuz_A Plexin-C1; structural g 87.1 4 0.00014 25.6 8.6 60 11-70 39-124 (126)
262 1ip9_A BEM1 protein; ubiquitin 86.8 2.8 9.5E-05 24.4 5.7 34 9-44 20-53 (85)
263 2cu3_A Unknown function protei 86.6 2.2 7.5E-05 23.1 5.2 56 9-72 5-60 (64)
264 3qa8_A MGC80376 protein; kinas 86.3 0.81 2.8E-05 36.7 4.4 50 10-59 321-371 (676)
265 1wgk_A Riken cDNA 2900073H19 p 86.0 4.3 0.00015 24.9 7.2 71 1-76 12-108 (114)
266 1rws_A Hypothetical protein PF 85.4 0.31 1E-05 27.8 1.2 47 15-70 25-71 (77)
267 1vd2_A Protein kinase C, IOTA 85.1 4.1 0.00014 23.9 6.2 43 79-121 7-51 (89)
268 2kmc_A Fermitin family homolog 84.6 4.7 0.00016 24.2 8.2 70 2-71 21-98 (102)
269 3hm6_X Plexin-B1; structural g 84.3 6.5 0.00022 31.3 8.4 63 11-73 274-362 (644)
270 1q1o_A Cell division control p 84.0 1.3 4.3E-05 26.7 3.5 38 10-47 22-64 (98)
271 1wgr_A Growth factor receptor- 83.6 3.2 0.00011 25.0 5.2 37 78-114 11-47 (100)
272 1wgr_A Growth factor receptor- 82.8 4.4 0.00015 24.4 5.6 56 3-58 12-74 (100)
273 1j0g_A Hypothetical protein 18 82.6 5 0.00017 23.1 5.4 61 14-74 27-88 (92)
274 3u52_E Phenol hydroxylase comp 82.5 6.6 0.00023 24.3 7.1 59 12-70 39-107 (119)
275 3ge3_C Toluene-4-monooxygenase 81.9 5.6 0.00019 23.0 5.9 59 13-71 17-82 (84)
276 3onh_A Ubiquitin-activating en 81.7 5.3 0.00018 25.1 5.8 58 14-72 9-79 (127)
277 2g1e_A Hypothetical protein TA 81.7 5.4 0.00019 22.7 5.7 56 15-71 19-85 (90)
278 2inc_C TOUB protein; DIIRON, 4 80.8 6.2 0.00021 22.8 8.1 59 13-71 15-81 (83)
279 1s3s_G P47 protein; AAA ATPase 80.3 3.7 0.00013 25.6 4.9 50 77-126 53-105 (127)
280 3ig3_A Plxna3 protein; plexin 80.2 15 0.0005 29.3 9.0 64 11-74 247-336 (627)
281 2k9x_A Tburm1, uncharacterized 79.0 0.59 2E-05 28.7 0.8 75 1-77 5-103 (110)
282 2cr5_A Reproduction 8; UBX dom 78.7 6.5 0.00022 23.7 5.5 48 78-126 25-74 (109)
283 1wgy_A RAP guanine nucleotide 78.4 8.8 0.0003 23.2 6.5 66 7-72 16-86 (104)
284 2l52_A Methanosarcina acetivor 78.4 8.1 0.00028 22.8 7.0 67 1-71 4-94 (99)
285 1y8x_B Ubiquitin-activating en 78.2 3.5 0.00012 24.7 4.0 59 12-70 6-82 (98)
286 2c7h_A RBBP6, retinoblastoma-b 78.0 8.1 0.00028 22.5 6.2 42 3-44 9-52 (86)
287 3qij_A Protein 4.1; cytoskelet 76.8 4.1 0.00014 29.0 4.8 38 77-114 18-55 (296)
288 2l32_A Small archaeal modifier 75.0 6.4 0.00022 22.1 4.4 45 78-126 2-46 (74)
289 3au4_A Myosin-X; protein-prote 74.4 6.1 0.00021 30.7 5.6 45 1-45 217-263 (555)
290 1ef1_A Moesin; membrane, FERM 72.8 6.1 0.00021 27.8 4.9 38 77-115 2-39 (294)
291 2hj1_A Hypothetical protein; s 71.7 13 0.00045 22.0 5.4 55 11-70 26-83 (97)
292 4a3p_A Ubiquitin carboxyl-term 70.6 6.9 0.00024 26.6 4.6 33 88-120 141-174 (217)
293 1h4r_A Merlin; FERM, neurofibr 70.3 8 0.00027 27.5 5.1 37 77-114 23-59 (314)
294 3jyu_A Ubiquitin carboxyl-term 69.3 8.1 0.00028 26.6 4.7 34 88-121 153-187 (231)
295 3pvl_A Myosin VIIA isoform 1; 68.6 9.2 0.00032 30.6 5.5 45 1-45 264-309 (655)
296 3au4_A Myosin-X; protein-prote 68.4 14 0.00048 28.6 6.4 45 77-121 217-263 (555)
297 4gmv_A RAS-associated and plec 68.1 17 0.00058 25.9 6.3 56 3-58 34-96 (281)
298 1pqs_A Cell division control p 67.7 5.3 0.00018 22.8 2.9 36 12-47 3-43 (77)
299 2qjl_A URM1, ubiquitin-related 67.2 16 0.00056 21.3 7.3 61 11-72 20-95 (99)
300 3r8s_T 50S ribosomal protein L 67.2 17 0.00057 21.4 5.2 38 11-48 28-66 (93)
301 3h9d_A ATG8, microtubule-assoc 66.6 18 0.00061 22.3 5.4 58 15-72 52-113 (119)
302 3hk0_A Growth factor receptor- 65.9 20 0.00068 25.1 6.2 56 3-58 11-73 (256)
303 1vq8_S 50S ribosomal protein L 65.8 11 0.00039 21.8 4.2 34 10-43 22-55 (85)
304 2zjr_Q 50S ribosomal protein L 65.2 12 0.0004 22.2 4.2 36 13-48 25-61 (95)
305 2v1y_A Phosphatidylinositol-4, 62.9 23 0.00078 21.5 5.3 60 3-62 22-95 (108)
306 1pqs_A Cell division control p 61.9 11 0.00038 21.4 3.5 35 88-122 3-42 (77)
307 4gmv_A RAS-associated and plec 60.9 23 0.0008 25.2 5.9 35 80-114 35-69 (281)
308 1q1o_A Cell division control p 60.1 15 0.00051 21.9 4.0 28 86-113 22-49 (98)
309 3tve_T 50S ribosomal protein L 60.0 20 0.0007 21.0 4.6 38 11-48 22-60 (92)
310 3tca_A Amyloid beta A4 precurs 59.6 27 0.00093 24.1 6.1 38 79-116 37-74 (291)
311 3tca_A Amyloid beta A4 precurs 59.2 34 0.0011 23.6 6.5 37 3-39 37-73 (291)
312 2k5l_A FEOA; structure, NESG, 58.9 9.5 0.00033 21.5 3.0 37 54-91 26-62 (81)
313 2eel_A Cell death activator CI 58.2 20 0.0007 21.0 4.3 39 21-59 28-68 (91)
314 3j21_T 50S ribosomal protein L 58.2 25 0.00085 20.4 4.8 34 10-43 23-56 (86)
315 2zjd_A Microtubule-associated 57.5 23 0.00077 22.2 4.7 59 14-72 56-119 (130)
316 2lgx_A Fermitin family homolog 57.1 4.3 0.00015 24.7 1.3 60 11-70 36-100 (112)
317 3m95_A Autophagy related prote 56.5 21 0.00072 22.2 4.4 59 14-72 56-118 (125)
318 2i1j_A Moesin; FERM, coiled-co 56.4 18 0.00063 28.4 5.1 37 77-114 5-41 (575)
319 2r2q_A Gamma-aminobutyric acid 56.0 23 0.00078 21.4 4.5 46 14-59 47-93 (110)
320 2k4y_A FEOA-like protein; GFT 55.1 12 0.0004 21.4 2.9 36 55-91 30-65 (86)
321 2gcx_A FEOA, ferrous iron tran 54.2 11 0.00039 20.7 2.7 38 54-92 24-61 (75)
322 1c1y_B Proto-onkogene serine/t 54.0 28 0.00096 19.8 5.0 42 3-44 4-45 (77)
323 3pvl_A Myosin VIIA isoform 1; 52.6 41 0.0014 26.9 6.6 45 77-121 264-309 (655)
324 3e19_A FEOA; transcriptional r 52.1 9.9 0.00034 21.1 2.2 30 54-84 29-58 (77)
325 3rui_B Autophagy-related prote 51.9 33 0.0011 21.1 4.8 59 14-72 50-112 (118)
326 1eo6_A GATE-16, golgi-associat 51.5 29 0.00098 21.2 4.4 59 14-72 48-110 (117)
327 3hvz_A Uncharacterized protein 49.2 34 0.0012 19.3 7.2 61 2-71 7-67 (78)
328 3lxf_A Ferredoxin; iron, iron- 49.2 26 0.00089 20.6 4.0 26 2-27 2-27 (104)
329 1f2r_I Inhibitor of caspase-ac 48.3 38 0.0013 20.2 4.5 39 21-59 37-79 (100)
330 2dhz_A RAP guanine nucleotide 48.2 45 0.0015 20.6 4.9 65 8-72 17-92 (120)
331 3hk0_A Growth factor receptor- 47.0 35 0.0012 23.9 4.9 35 79-113 11-45 (256)
332 3chb_D Cholera toxin; toxin/re 46.1 28 0.00097 20.1 3.5 31 3-33 39-69 (104)
333 2r2o_A Plexin-B1; effector dom 45.1 35 0.0012 21.7 4.1 29 86-114 40-70 (138)
334 2k5f_A Ferrous iron transport 43.9 23 0.00078 21.2 3.1 35 55-90 26-60 (105)
335 1v8c_A MOAD related protein; r 43.7 64 0.0022 20.9 5.5 81 15-109 18-108 (168)
336 2qwv_A UPF0217 protein VC_A105 43.5 75 0.0026 21.6 6.1 69 58-126 49-118 (208)
337 4gdk_A Ubiquitin-like protein 42.0 50 0.0017 19.2 4.3 46 14-59 23-70 (91)
338 2zkr_s 60S ribosomal protein L 41.1 54 0.0018 21.2 4.6 33 11-43 94-126 (156)
339 2daj_A KIAA0977 protein, COBL- 40.8 53 0.0018 19.1 4.7 43 79-121 13-55 (91)
340 2al6_A Focal adhesion kinase 1 40.1 28 0.00096 25.5 3.7 55 5-59 12-77 (375)
341 2h3j_A Hypothetical protein PA 38.8 12 0.00042 20.4 1.2 29 55-83 26-54 (75)
342 2bt6_A Adrenodoxin 1; rutheniu 38.8 46 0.0016 19.5 3.9 26 2-27 8-33 (108)
343 1wxm_A A-RAF proto-oncogene se 37.0 61 0.0021 18.8 5.9 42 3-44 10-51 (86)
344 3u5e_X 60S ribosomal protein L 36.6 71 0.0024 20.3 4.6 33 11-43 80-112 (142)
345 2zjd_A Microtubule-associated 36.4 78 0.0027 19.7 5.7 35 89-123 55-90 (130)
346 1rm6_C 4-hydroxybenzoyl-COA re 36.2 61 0.0021 20.9 4.4 27 3-30 5-31 (161)
347 4a17_R RPL23A, 60S ribosomal p 35.5 78 0.0027 20.3 4.7 33 11-43 88-120 (150)
348 2lx9_A Ferrous iron transport 35.3 28 0.00095 19.7 2.4 30 55-84 25-54 (83)
349 4eku_A Protein-tyrosine kinase 35.1 80 0.0027 23.4 5.4 52 8-59 35-97 (392)
350 1ltr_D ETB-R2, heat-labIle ent 35.0 34 0.0012 20.0 2.7 31 3-33 38-68 (113)
351 4dxa_B KREV interaction trappe 34.5 44 0.0015 23.8 3.9 42 1-46 6-52 (322)
352 2y5c_A Adrenodoxin-like protei 34.1 61 0.0021 19.0 3.9 26 2-27 7-32 (109)
353 2al6_A Focal adhesion kinase 1 33.9 49 0.0017 24.2 4.1 34 80-113 11-48 (375)
354 3he4_B Synzip5; heterodimeric 33.7 26 0.00089 17.0 1.7 15 96-110 2-16 (46)
355 2wlb_A ETP1-FD, electron trans 33.7 67 0.0023 18.5 4.0 27 2-28 5-31 (103)
356 3khf_A Microtubule-associated 32.7 33 0.0011 19.5 2.5 44 31-74 47-92 (99)
357 1n62_A Carbon monoxide dehydro 32.1 59 0.002 21.1 3.8 27 2-29 5-31 (166)
358 2nvu_B Maltose binding protein 32.0 1.3E+02 0.0043 24.4 6.5 58 13-70 714-789 (805)
359 3rui_B Autophagy-related prote 31.6 90 0.0031 19.0 5.3 30 90-119 50-79 (118)
360 3f5r_A FACT complex subunit PO 30.9 38 0.0013 22.7 2.8 46 2-47 86-131 (191)
361 3hrd_D Nicotinate dehydrogenas 30.5 55 0.0019 21.2 3.4 26 2-28 5-30 (160)
362 1wmh_B Partitioning defective- 30.4 82 0.0028 18.2 5.5 45 3-47 7-54 (86)
363 2cu1_A Mitogen-activated prote 30.0 92 0.0031 18.6 4.8 40 4-46 10-50 (103)
364 2lte_A Specialized acyl carrie 36.1 11 0.00038 22.4 0.0 72 22-109 27-98 (103)
365 1t3q_A Quinoline 2-oxidoreduct 29.8 57 0.002 21.1 3.5 28 1-29 10-37 (168)
366 3ny5_A Serine/threonine-protei 29.7 90 0.0031 18.4 5.0 42 3-44 16-57 (96)
367 1ffv_A CUTS, iron-sulfur prote 29.4 78 0.0027 20.5 4.0 27 2-29 5-31 (163)
368 1xlq_A Putidaredoxin, PDX; [2F 28.6 89 0.003 18.1 4.0 26 2-27 2-27 (106)
369 1dd4_C 50S ribosomal protein L 28.6 53 0.0018 16.0 2.4 17 23-39 18-34 (40)
370 3iz5_X 60S ribosomal protein L 28.3 78 0.0027 20.4 3.8 33 11-43 90-122 (152)
371 3hui_A Ferredoxin; cytochrome 28.2 98 0.0034 18.9 4.2 26 2-27 23-48 (126)
372 3f5r_A FACT complex subunit PO 27.0 98 0.0033 20.7 4.2 52 73-124 81-132 (191)
373 3ig3_A Plxna3 protein; plexin 27.0 1.1E+02 0.0036 24.5 5.0 50 50-108 219-268 (627)
374 1uwm_A Ferredoxin VI, FDVI; el 26.8 97 0.0033 17.9 4.2 26 2-27 2-27 (106)
375 3mhx_A Putative ferrous iron t 26.5 38 0.0013 19.0 2.0 29 55-83 30-59 (85)
376 1awd_A Ferredoxin; electron tr 26.4 90 0.0031 17.6 3.7 28 1-29 1-28 (94)
377 3bbo_V Ribosomal protein L23; 26.3 34 0.0011 23.0 1.8 31 11-41 132-162 (198)
378 1jq4_A Methane monooxygenase c 26.3 87 0.003 17.8 3.6 28 2-29 6-33 (98)
379 2jx5_A GLUB(S27A); ubiquitin, 26.2 79 0.0027 16.7 7.2 53 1-58 1-53 (69)
380 1b44_D ETB-POL, protein (B-POL 26.2 45 0.0015 19.9 2.2 31 3-33 38-68 (129)
381 2k5i_A Iron transport protein; 25.1 62 0.0021 20.8 3.0 12 100-112 97-108 (162)
382 4a6q_A Histone deacetylase com 24.8 53 0.0018 20.9 2.5 62 14-75 57-141 (143)
383 1wz3_A Autophagy 12B, ATG12B, 24.3 1.1E+02 0.0037 17.9 3.7 58 13-72 30-90 (96)
384 1frr_A Ferredoxin I; electron 23.1 1.1E+02 0.0037 17.1 3.9 26 2-28 3-28 (95)
385 4dxa_B KREV interaction trappe 22.5 1.2E+02 0.004 21.5 4.3 33 78-114 7-41 (322)
386 3cjl_A Domain of unknown funct 22.4 1.1E+02 0.0038 17.7 3.4 38 1-38 6-45 (88)
387 2y3a_A Phosphatidylinositol-4, 22.3 1.3E+02 0.0044 25.8 5.0 31 3-33 54-84 (1092)
388 2pzd_A Serine protease HTRA2; 21.8 1.2E+02 0.0041 17.5 3.7 39 32-71 49-87 (113)
389 4eku_A Protein-tyrosine kinase 21.6 1.8E+02 0.0061 21.5 5.2 38 84-121 35-77 (392)
390 3w1s_C Ubiquitin-like protein 21.4 1.3E+02 0.0044 17.4 4.2 56 14-71 26-84 (91)
391 4dxe_H ACP, acyl carrier prote 20.9 78 0.0027 18.4 2.6 80 13-108 18-98 (101)
392 1tfi_A Transcriptional elongat 20.8 54 0.0018 16.7 1.6 12 122-133 32-43 (50)
393 1af8_A Actinorhodin polyketide 20.6 31 0.0011 19.0 0.8 78 20-109 4-81 (86)
394 1wfy_A Regulator of G-protein 20.3 95 0.0033 18.6 2.8 40 84-123 25-64 (104)
395 3hrs_A Metalloregulator SCAR; 20.1 1.2E+02 0.0041 20.1 3.7 29 55-83 166-194 (214)
No 1
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=1.3e-34 Score=194.44 Aligned_cols=129 Identities=26% Similarity=0.311 Sum_probs=124.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEE-E-cCEEcCCCCCccccccccccceEEEEE-eecce
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGGT 77 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~-~g~~L~d~~~L~~~~i~~~~~i~l~~~-~~~~~ 77 (134)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+ | +|+.|+|+.+|++|++.+|+++++.++ .++++
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m 82 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPL 82 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcE
Confidence 78999999999999999999999999999999999999999999 9 799999999999999999999999999 58999
Q ss_pred eeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 78 ~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
.++|++.+|++++++|++++||++||++|++.+|+|+++|+|+|+|+.|.+.
T Consensus 83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~ 134 (159)
T 3rt3_B 83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQ 134 (159)
T ss_dssp EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTT
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCC
Confidence 9999999999999999999999999999999999999999999999998653
No 2
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=3.4e-34 Score=194.73 Aligned_cols=128 Identities=77% Similarity=1.076 Sum_probs=125.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecceeee
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIK 80 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~ 80 (134)
|+|+|+..+|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.++++|++.++..+++.++
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~~i~ 100 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 100 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccccce
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 81 VKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 81 v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
|++.+|+++.++|.+++||.+||.+|+..+|+|+++|+|+|+|+.|.+
T Consensus 101 Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D 148 (172)
T 3u30_A 101 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 148 (172)
T ss_dssp EEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCT
T ss_pred eecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCC
Confidence 999999999999999999999999999999999999999999999864
No 3
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=100.00 E-value=6.1e-33 Score=184.55 Aligned_cols=128 Identities=77% Similarity=1.076 Sum_probs=124.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecceeee
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIK 80 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~ 80 (134)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|+++++..+.++++.++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~ 80 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 80 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 81 VKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 81 v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
|++.+|+++.++|++++||++||.+|++.+|+|+++|+|+|.|+.|.+
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d 128 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCC
Confidence 999999999999999999999999999999999999999999998853
No 4
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.90 E-value=6.8e-25 Score=139.63 Aligned_cols=100 Identities=75% Similarity=1.044 Sum_probs=95.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecceeee
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIK 80 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~ 80 (134)
++|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++..++++|++++
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~~~~ 89 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGSMGG 89 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSCCCS
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCceee
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ee---ecCCcEEEEEeccCCcHH
Q 032747 81 VK---TLTGKEIEIDIEPTDTIE 100 (134)
Q Consensus 81 v~---~~~~~~~~~~V~~~~tV~ 100 (134)
++ +.+|++++++|.+++||.
T Consensus 90 ~~~~~~~~g~~~~~~v~~~~~~~ 112 (114)
T 2kdi_A 90 AADEEELIRKAIELSLKESRNSG 112 (114)
T ss_dssp SCSSSHHHHHHHHSSSHHHHHGG
T ss_pred ccccccccCceEEEEeccccccC
Confidence 88 556899999999999886
No 5
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.88 E-value=1.4e-22 Score=125.63 Aligned_cols=91 Identities=80% Similarity=1.091 Sum_probs=74.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecceeee
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIK 80 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~ 80 (134)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++..+..+|.+++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~ 80 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPN 80 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC----
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCcEEEE
Q 032747 81 VKTLTGKEIEI 91 (134)
Q Consensus 81 v~~~~~~~~~~ 91 (134)
.++.++..-.+
T Consensus 81 ~~~v~~~~~~~ 91 (98)
T 1yx5_B 81 SSSVDKLAAAL 91 (98)
T ss_dssp -----------
T ss_pred cccCCCchhhh
Confidence 99988765444
No 6
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.88 E-value=2.9e-22 Score=121.96 Aligned_cols=79 Identities=54% Similarity=0.908 Sum_probs=72.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecceee
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMI 79 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i 79 (134)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++.+++.||...
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~~~ 79 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGGGL 79 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC-----
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999888754
No 7
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.87 E-value=5.5e-22 Score=118.30 Aligned_cols=75 Identities=36% Similarity=0.595 Sum_probs=72.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeec
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 75 (134)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++.+++.|
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999988654
No 8
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.86 E-value=1.6e-21 Score=115.12 Aligned_cols=76 Identities=57% Similarity=0.952 Sum_probs=72.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecc
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (134)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++.++..||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999988775
No 9
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.86 E-value=1.9e-21 Score=118.11 Aligned_cols=71 Identities=23% Similarity=0.427 Sum_probs=68.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEE
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (134)
|+|+|+++.|+++.++++|++||.+||++|+++.|+|+++|+|.|+|+.|+|+.+|++|+|.+|++|++..
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999999864
No 10
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.86 E-value=2.8e-21 Score=114.06 Aligned_cols=76 Identities=95% Similarity=1.320 Sum_probs=73.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecc
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (134)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++.+++.||
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998775
No 11
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.85 E-value=4.9e-21 Score=118.12 Aligned_cols=79 Identities=91% Similarity=1.229 Sum_probs=73.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecceee
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMI 79 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i 79 (134)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++.++..+|...
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~~ 80 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYADL 80 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC----
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCcc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999888653
No 12
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.85 E-value=3.6e-21 Score=119.34 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=73.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecc
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (134)
|+|+|+..+|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++.+++.||
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999998775
No 13
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.85 E-value=4.4e-21 Score=116.75 Aligned_cols=77 Identities=86% Similarity=1.250 Sum_probs=69.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecce
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 77 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 77 (134)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++.++++||.
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~ 86 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 86 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC------
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999988874
No 14
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.85 E-value=3.5e-21 Score=116.13 Aligned_cols=77 Identities=79% Similarity=1.147 Sum_probs=72.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecce
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 77 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 77 (134)
|+|+|+..+|+.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|++.++++|++.+++.+|.
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 80 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGG 80 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC---
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999988764
No 15
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.85 E-value=2.3e-21 Score=117.69 Aligned_cols=76 Identities=58% Similarity=0.975 Sum_probs=73.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecc
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (134)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.++++|++.+++.||
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999988765
No 16
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.85 E-value=3.3e-21 Score=114.89 Aligned_cols=76 Identities=18% Similarity=0.448 Sum_probs=72.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecc
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (134)
|+|+|++.+|+.+.++|.+++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++.++..||
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999988775
No 17
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.85 E-value=4.7e-21 Score=115.66 Aligned_cols=72 Identities=33% Similarity=0.489 Sum_probs=70.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEE-cCCCCCccccccccccceEEEEE
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~-L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+. |+|+.+|++|++.+|++|++.++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 7999999999999999999999999999999999999999999999999 99999999999999999999875
No 18
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.84 E-value=7.7e-21 Score=114.56 Aligned_cols=77 Identities=91% Similarity=1.233 Sum_probs=73.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecce
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 77 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 77 (134)
|+|+|+..+|+.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|++.++++|++.+++.+|.
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~ 80 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGG 80 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC-
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999988764
No 19
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.84 E-value=3.4e-21 Score=117.23 Aligned_cols=78 Identities=36% Similarity=0.586 Sum_probs=70.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeeccee
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTM 78 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~ 78 (134)
|+|+|+..+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++..+..+|..
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~~ 82 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGLE 82 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC------
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCcc
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999887764
No 20
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.84 E-value=7.5e-21 Score=115.26 Aligned_cols=77 Identities=34% Similarity=0.525 Sum_probs=74.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecce
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 77 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 77 (134)
|+|+|+..+|+.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|++.++++|++.+++.+|.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~ 84 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP 84 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999988875
No 21
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.84 E-value=1.3e-20 Score=127.43 Aligned_cols=83 Identities=90% Similarity=1.208 Sum_probs=76.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecceeee
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIK 80 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~ 80 (134)
|+|+|+..+|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++.+++.||....
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k~~ 80 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGGET 80 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---CC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999987666
Q ss_pred eee
Q 032747 81 VKT 83 (134)
Q Consensus 81 v~~ 83 (134)
|+.
T Consensus 81 vkf 83 (169)
T 3l0w_B 81 IKF 83 (169)
T ss_dssp EEE
T ss_pred ccc
Confidence 653
No 22
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.84 E-value=1.2e-20 Score=114.88 Aligned_cols=78 Identities=36% Similarity=0.605 Sum_probs=74.1
Q ss_pred CEEEEEeCCC-CEEEE-EEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeeccee
Q 032747 1 MQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTM 78 (134)
Q Consensus 1 m~i~v~~~~g-~~~~~-~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~ 78 (134)
|+|+|+..+| +.+.+ ++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.++++|++.+++.+|.+
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG~~ 87 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSGPS 87 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCSSC
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCCCC
Confidence 7899999999 79999 599999999999999999999999999999999999999999999999999999999888754
No 23
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.84 E-value=1.7e-20 Score=114.48 Aligned_cols=75 Identities=33% Similarity=0.573 Sum_probs=71.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecc
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (134)
|+|+|+..+|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++ +|++|++.++.+++
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999 89999999987654
No 24
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.84 E-value=1.2e-20 Score=115.36 Aligned_cols=73 Identities=92% Similarity=1.257 Sum_probs=70.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEe
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (134)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+|++|++.+++
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rl 90 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 90 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEec
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998764
No 25
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.84 E-value=1.8e-20 Score=111.38 Aligned_cols=73 Identities=36% Similarity=0.643 Sum_probs=69.8
Q ss_pred CEEEEEeCCCCEE-EEE-EcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEe
Q 032747 1 MQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (134)
Q Consensus 1 m~i~v~~~~g~~~-~~~-v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (134)
|+|+|+..+|+.+ .++ +++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++.+++
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 7899999999885 899 999999999999999999999999999999999999999999999999999998875
No 26
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.83 E-value=2.1e-20 Score=118.35 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecc
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (134)
|+|+|+..+|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.++++|++.+++.||
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999998775
No 27
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.83 E-value=2e-20 Score=115.13 Aligned_cols=76 Identities=28% Similarity=0.458 Sum_probs=72.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCC-CCccccccccccceEEEEEeecce
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGGT 77 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~-~~L~~~~i~~~~~i~l~~~~~~~~ 77 (134)
|+|+|+..+| .+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ .+|++|++.+|++|++.+++++|.
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg~ 92 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINRA 92 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSSC
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCCC
Confidence 6899999887 899999999999999999999999999999999999999999 999999999999999999988875
No 28
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.83 E-value=1.4e-20 Score=116.47 Aligned_cols=76 Identities=18% Similarity=0.448 Sum_probs=73.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecc
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (134)
|+|+|++.+|+.+.++|.+++||.+||++|++..|+|+++|+|+|+|+.|.|+.+|++|++.++++|++.+++.||
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999988765
No 29
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.83 E-value=9.2e-21 Score=129.74 Aligned_cols=83 Identities=88% Similarity=1.166 Sum_probs=80.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecceeee
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIK 80 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~ 80 (134)
|+|+|+..+|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.++++|++.+++.+|..++
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~~f 185 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQTF 185 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCcce
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eee
Q 032747 81 VKT 83 (134)
Q Consensus 81 v~~ 83 (134)
|+.
T Consensus 186 vk~ 188 (189)
T 3q3f_A 186 TKI 188 (189)
T ss_dssp CCC
T ss_pred Eec
Confidence 863
No 30
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.83 E-value=1.2e-20 Score=116.56 Aligned_cols=71 Identities=23% Similarity=0.324 Sum_probs=68.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEE
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (134)
|+|+|+++.|+.+.++|++++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+|.++++|+|..
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999863
No 31
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.83 E-value=4.2e-20 Score=112.23 Aligned_cols=71 Identities=35% Similarity=0.627 Sum_probs=68.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEE
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++ +|++|++..|
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 6899999999999999999999999999999999999999999999999999999999999 8999998764
No 32
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.5e-20 Score=113.93 Aligned_cols=73 Identities=22% Similarity=0.429 Sum_probs=68.9
Q ss_pred CEEEEEeCCCCEEEEEEc--CCCcHHHHHHHH-HhhhCCCCCceEEEEcCEEcCCCCCcccccc-ccccceEEEEEe
Q 032747 1 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~--~~~tv~~lK~~i-~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i-~~~~~i~l~~~~ 73 (134)
|+|+||+.+|+.+.++++ +++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|++ .+|++|++..++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 899999999999988766 999999999999 9999999999999999999999999999999 799999998874
No 33
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.83 E-value=6.5e-20 Score=113.02 Aligned_cols=74 Identities=30% Similarity=0.585 Sum_probs=70.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhh---hCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEee
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~---~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (134)
|+|+|+..+|+.+.++|++++||.+||++|++. .|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++.++.+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCC
Confidence 899999999999999999999999999999999 78999999999999999999999999999999999988754
No 34
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4.8e-20 Score=110.14 Aligned_cols=73 Identities=40% Similarity=0.690 Sum_probs=70.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEe
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (134)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+|++|++.+++
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998764
No 35
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.82 E-value=3.1e-20 Score=114.05 Aligned_cols=74 Identities=36% Similarity=0.620 Sum_probs=70.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecc
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (134)
|+|+|+. |+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.++++|++.+++.||
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 7899998 7999999999999999999999999999999999999999999999999999999999999988775
No 36
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.82 E-value=1.2e-19 Score=109.36 Aligned_cols=74 Identities=30% Similarity=0.531 Sum_probs=69.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhh---hCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEee
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~---~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (134)
|+|+|+..+|+.+.+++++++||.+||++|++. .|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++..+.+
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 789999999999999999999999999999998 88999999999999999999999999999999999987753
No 37
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=114.36 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=72.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecc
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (134)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++.+++.||
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999998775
No 38
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=4.8e-20 Score=115.76 Aligned_cols=74 Identities=22% Similarity=0.437 Sum_probs=70.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEee
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (134)
|+|+||..+|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+|++|++.++.+
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998854
No 39
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.70 E-value=1.4e-21 Score=115.67 Aligned_cols=75 Identities=33% Similarity=0.588 Sum_probs=72.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeec
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 75 (134)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++.++++|
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 899999999999999999999999999999999999999999999999999999999999999999999988765
No 40
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.81 E-value=7.6e-20 Score=112.27 Aligned_cols=77 Identities=29% Similarity=0.476 Sum_probs=71.5
Q ss_pred CEEEEEeCCCC--EEEEEEcCCCcHHHHHHHHHhhh--CCCCCceEEEEcCEEcCCCCCcccc--ccccccceEEEEEee
Q 032747 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLRLR 74 (134)
Q Consensus 1 m~i~v~~~~g~--~~~~~v~~~~tv~~lK~~i~~~~--gi~~~~q~L~~~g~~L~d~~~L~~~--~i~~~~~i~l~~~~~ 74 (134)
|+|+|+..+++ .+.+++++++||.+||++|++.+ ++|+++|+|+|+|+.|+|+.+|++| ++.++++||+.+++.
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~~ 87 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVK 87 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCCC
Confidence 78999999988 56677779999999999999998 9999999999999999999999999 999999999999887
Q ss_pred cce
Q 032747 75 GGT 77 (134)
Q Consensus 75 ~~~ 77 (134)
+|.
T Consensus 88 gg~ 90 (93)
T 1wgd_A 88 SGP 90 (93)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 41
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.81 E-value=1.2e-19 Score=112.15 Aligned_cols=73 Identities=21% Similarity=0.423 Sum_probs=67.9
Q ss_pred CEEEEEeCCCCEEEE--EEcCCCcHHHHHHHH-HhhhCCCCCceEEEEcCEEcCCCCCcccccc-ccccceEEEEEe
Q 032747 1 MQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (134)
Q Consensus 1 m~i~v~~~~g~~~~~--~v~~~~tv~~lK~~i-~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i-~~~~~i~l~~~~ 73 (134)
|+|+||+.+|+.+.+ ++++++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|++ ++|++|+++++.
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 789999999998777 556999999999999 8888999999999999999999999999999 999999998874
No 42
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.81 E-value=1.9e-19 Score=106.56 Aligned_cols=71 Identities=34% Similarity=0.574 Sum_probs=67.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEE
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
|+|+|+. +|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+|++|++..+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 6889999 8899999999999999999999999999999999999999999999999999999999998765
No 43
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.80 E-value=2.5e-19 Score=119.83 Aligned_cols=77 Identities=36% Similarity=0.604 Sum_probs=72.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecce
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 77 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 77 (134)
|+|+|+..+|+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++.+++.||.
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999988773
No 44
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=2.2e-19 Score=111.62 Aligned_cols=76 Identities=34% Similarity=0.475 Sum_probs=71.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecce
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 77 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 77 (134)
|+|+|+..+|+ +.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++..+.+++.
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~p 98 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 98 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCSC
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCCC
Confidence 68999999885 78999999999999999999999999999999999999999999999999999999999877654
No 45
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.79 E-value=1.2e-19 Score=111.98 Aligned_cols=76 Identities=28% Similarity=0.369 Sum_probs=71.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecce
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 77 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 77 (134)
|+|+|+.. |+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++..+..+|.
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g~ 93 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSGP 93 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSCS
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCCC
Confidence 68999998 89999999999999999999999999999999999999999999999999999999999998877654
No 46
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=2.7e-19 Score=112.32 Aligned_cols=75 Identities=28% Similarity=0.503 Sum_probs=71.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeec
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 75 (134)
|+|+|+..+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++..+.+.
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~ 98 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPV 98 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSS
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999887653
No 47
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.79 E-value=9.2e-19 Score=108.99 Aligned_cols=74 Identities=32% Similarity=0.446 Sum_probs=69.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeec
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 75 (134)
|+|+|+.. |+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++..+.+.
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 68999998 889999999999999999999999999999999999999999999999999999999999887643
No 48
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=9.6e-19 Score=112.77 Aligned_cols=76 Identities=30% Similarity=0.402 Sum_probs=69.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecce
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 77 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 77 (134)
|+|+|+.. |+.+.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|++..+..+|.
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 68999998 89999999999999999999999999999999999999999999999999999999999999987764
No 49
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.78 E-value=8.7e-21 Score=122.92 Aligned_cols=77 Identities=96% Similarity=1.313 Sum_probs=0.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecce
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 77 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 77 (134)
|+|+|++.+|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|++.+++.||.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~ 77 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77 (128)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999988874
No 50
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.78 E-value=2.1e-19 Score=113.70 Aligned_cols=77 Identities=32% Similarity=0.462 Sum_probs=73.3
Q ss_pred CEEEEEeC---CCCEEEEEEcC-CCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecc
Q 032747 1 MQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (134)
Q Consensus 1 m~i~v~~~---~g~~~~~~v~~-~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (134)
|+|+|+.. +|+.+.+++++ ++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++.+++.||
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~GG 107 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERSG 107 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCCS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 67899998 88999999998 999999999999999999999999999999999999999999999999999998887
Q ss_pred e
Q 032747 77 T 77 (134)
Q Consensus 77 ~ 77 (134)
.
T Consensus 108 k 108 (111)
T 1we6_A 108 P 108 (111)
T ss_dssp S
T ss_pred C
Confidence 4
No 51
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.78 E-value=5.5e-19 Score=112.02 Aligned_cols=75 Identities=28% Similarity=0.431 Sum_probs=68.9
Q ss_pred CEEEEEeCCCC-EEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccc-------cccceEEEEE
Q 032747 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 72 (134)
Q Consensus 1 m~i~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~-------~~~~i~l~~~ 72 (134)
|.++++...++ ++.++|.+++||.+||++|+...|+|+++|+|+|+|+.|+|+++|++|||. ++++|++.++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 77888887776 488999999999999999999999999999999999999999999999999 7999999998
Q ss_pred eecc
Q 032747 73 LRGG 76 (134)
Q Consensus 73 ~~~~ 76 (134)
.+|
T Consensus 81 -~~g 83 (118)
T 2fnj_B 81 -ADD 83 (118)
T ss_dssp -SSS
T ss_pred -CCC
Confidence 443
No 52
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.78 E-value=1.2e-18 Score=110.20 Aligned_cols=75 Identities=29% Similarity=0.437 Sum_probs=70.1
Q ss_pred CEEEEEeCCCC-EEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCcccccccc-------ccceEEEEE
Q 032747 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 72 (134)
Q Consensus 1 m~i~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~-------~~~i~l~~~ 72 (134)
|.++++...++ ++.+++.+++||.+||++|+...|+|+++|+|+|+|+.|+|+++|++|||.+ +++|++.++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 78888888777 6789999999999999999999999999999999999999999999999999 999999999
Q ss_pred eec
Q 032747 73 LRG 75 (134)
Q Consensus 73 ~~~ 75 (134)
..+
T Consensus 81 ~~~ 83 (118)
T 4ajy_B 81 ADD 83 (118)
T ss_dssp CSS
T ss_pred cCC
Confidence 644
No 53
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=9.5e-19 Score=109.80 Aligned_cols=76 Identities=34% Similarity=0.475 Sum_probs=71.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecce
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 77 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 77 (134)
|+|+|+..+|+ +.++|++++||.+||++|++.+|+++++|+|+|+|+.|+|+.+|++|+|.+|++|++..+..++.
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~ 93 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 93 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCS
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCC
Confidence 78999998875 78999999999999999999999999999999999999999999999999999999999887654
No 54
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.77 E-value=2.9e-19 Score=111.52 Aligned_cols=76 Identities=24% Similarity=0.385 Sum_probs=69.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCC---------------ceEEEEcCEEcC-CCCCccccccccc
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD---------------QQRLIFAGKQLE-DGRTLADYNIQKE 64 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~---------------~q~L~~~g~~L~-d~~~L~~~~i~~~ 64 (134)
|+|+|+..+|+.+.++|.+++||.+||++|++.+++|+. .|+|+|+|+.|. |+.+|++|||.+|
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g 87 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR 87 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCC
Confidence 799999999999999999999999999999999998873 569999999996 6799999999999
Q ss_pred cceEEEEEeecc
Q 032747 65 STLHLVLRLRGG 76 (134)
Q Consensus 65 ~~i~l~~~~~~~ 76 (134)
++|+++.++.+.
T Consensus 88 ~~l~lv~~lr~~ 99 (105)
T 1v2y_A 88 DEVSFIKKLGQK 99 (105)
T ss_dssp EEEEEEECSCSC
T ss_pred CEEEEEehhccC
Confidence 999999887654
No 55
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.77 E-value=8.9e-19 Score=109.23 Aligned_cols=77 Identities=19% Similarity=0.366 Sum_probs=70.7
Q ss_pred CEEEEEeCCC----CEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCC-CCccccccccccceEEEEEeec
Q 032747 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 75 (134)
Q Consensus 1 m~i~v~~~~g----~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~-~~L~~~~i~~~~~i~l~~~~~~ 75 (134)
|+|+|+...+ +.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ .+|++|+|.+|++|++..+..+
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~g 87 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDNV 87 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCCC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCCC
Confidence 7899998754 7899999999999999999999999999999999999999887 6899999999999999988766
Q ss_pred ce
Q 032747 76 GT 77 (134)
Q Consensus 76 ~~ 77 (134)
|.
T Consensus 88 g~ 89 (102)
T 1v5o_A 88 GL 89 (102)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 56
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.5e-18 Score=107.19 Aligned_cols=72 Identities=24% Similarity=0.314 Sum_probs=65.1
Q ss_pred EEEEEeCC----CCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEee
Q 032747 2 QIFVKTLT----GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (134)
Q Consensus 2 ~i~v~~~~----g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (134)
.|.|+..+ ++.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++| +++++.
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lr 92 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELK 92 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEEC
Confidence 36677777 7789999999999999999999999999999999999999999999999999999999 555543
No 57
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.77 E-value=2.8e-20 Score=123.45 Aligned_cols=77 Identities=96% Similarity=1.311 Sum_probs=0.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecce
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 77 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 77 (134)
|+|+|+..+|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|++.+++.||.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998873
No 58
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.76 E-value=2.4e-18 Score=109.42 Aligned_cols=77 Identities=29% Similarity=0.570 Sum_probs=71.0
Q ss_pred CEEEEEeCC----------CCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEE
Q 032747 1 MQIFVKTLT----------GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (134)
Q Consensus 1 m~i~v~~~~----------g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 70 (134)
++|.|+.++ |+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++.
T Consensus 26 i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv 105 (115)
T 1we7_A 26 VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLA 105 (115)
T ss_dssp EEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEE
T ss_pred EEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEE
Confidence 356777753 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecce
Q 032747 71 LRLRGGT 77 (134)
Q Consensus 71 ~~~~~~~ 77 (134)
+++.||.
T Consensus 106 ~rl~GGk 112 (115)
T 1we7_A 106 LKERSGP 112 (115)
T ss_dssp ECCCSCC
T ss_pred EEcCCCC
Confidence 9998875
No 59
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.75 E-value=5.6e-18 Score=112.07 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=72.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecc
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (134)
|+|+|+..+|+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++..+++||
T Consensus 77 ~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred cceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999998775
No 60
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.75 E-value=3.1e-18 Score=115.95 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=69.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecc
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (134)
|+++|+..+|+.+.+++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++.++++||
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999998775
No 61
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.75 E-value=9.2e-18 Score=104.42 Aligned_cols=72 Identities=24% Similarity=0.253 Sum_probs=66.9
Q ss_pred CEEEEEeCCC--CEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCcccccc-ccccceEEEEE
Q 032747 1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 72 (134)
Q Consensus 1 m~i~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i-~~~~~i~l~~~ 72 (134)
|+|+|+...+ ..++++|+|++||.+||++|+.++|+|++.|||+++|+.++|+.+|++||| .+|+++++.+-
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 6789999875 578899999999999999999999999999999999999999999999999 69999999775
No 62
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.75 E-value=8.3e-18 Score=107.76 Aligned_cols=78 Identities=26% Similarity=0.425 Sum_probs=69.5
Q ss_pred CEEEEEeCCCCEE-EEEEcCCCcHHHHHHHHH-----hhhCCCC--CceEEEEcCEEcCCCCCccccccccc------cc
Q 032747 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQ-----DKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE------ST 66 (134)
Q Consensus 1 m~i~v~~~~g~~~-~~~v~~~~tv~~lK~~i~-----~~~gi~~--~~q~L~~~g~~L~d~~~L~~~~i~~~------~~ 66 (134)
|.|++|+.+|+.+ ++++++++||.+||++|+ ...|+|+ ++|+|+|+|+.|+|+.+|++|+|.++ ++
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 6899999999998 799999999999999995 4557886 79999999999999999999999988 67
Q ss_pred eEEEEEeeccee
Q 032747 67 LHLVLRLRGGTM 78 (134)
Q Consensus 67 i~l~~~~~~~~~ 78 (134)
+++++++.++..
T Consensus 97 mhlVlrl~g~~k 108 (126)
T 1se9_A 97 MHVIIQAPVTEK 108 (126)
T ss_dssp EEEEECCCSSCC
T ss_pred EEEEeccCCccc
Confidence 999998876643
No 63
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.74 E-value=8.1e-19 Score=109.23 Aligned_cols=71 Identities=34% Similarity=0.574 Sum_probs=66.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEE
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
|.|+|+. +|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+|++|++..+
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 4678887 8899999999999999999999999999999999999999999999999999999999998755
No 64
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=1.2e-17 Score=106.01 Aligned_cols=74 Identities=24% Similarity=0.419 Sum_probs=66.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHh------hhCC--CCCceEEEEcCEEcCCCCCccccccccc--cceEEE
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STLHLV 70 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~------~~gi--~~~~q~L~~~g~~L~d~~~L~~~~i~~~--~~i~l~ 70 (134)
|.|+|++..|+.+.++|++++||.+||++|++ ..++ |+++|+|+|.|+.|+|+.+|++|+|..+ +++|++
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 68999999999999999999999999999999 4564 6899999999999999999999999755 578888
Q ss_pred EEee
Q 032747 71 LRLR 74 (134)
Q Consensus 71 ~~~~ 74 (134)
+++.
T Consensus 97 lr~~ 100 (116)
T 1wgh_A 97 ARET 100 (116)
T ss_dssp ECSS
T ss_pred ccCC
Confidence 7754
No 65
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.73 E-value=1.2e-17 Score=100.82 Aligned_cols=70 Identities=29% Similarity=0.452 Sum_probs=64.8
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEE
Q 032747 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 3 i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
..++..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++..+
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 3556678899999999999999999999999999999999999999999999999999999999988654
No 66
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.73 E-value=9.9e-18 Score=107.69 Aligned_cols=76 Identities=24% Similarity=0.366 Sum_probs=67.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHh------hhCCC--CCceEEEEcCEEcCCCCCcccccccccc--ceEEE
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES--TLHLV 70 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~------~~gi~--~~~q~L~~~g~~L~d~~~L~~~~i~~~~--~i~l~ 70 (134)
|.|+|++..|+.++++|++++||.+||++|++ ..|+| +++|+|+|+|+.|+|+.+|++|+|..++ ++++.
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv 97 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 97 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 67899999999999999999999999999999 56774 8999999999999999999999998665 67888
Q ss_pred EEeecc
Q 032747 71 LRLRGG 76 (134)
Q Consensus 71 ~~~~~~ 76 (134)
+++.++
T Consensus 98 ~r~~~~ 103 (125)
T 2gow_A 98 ARETLP 103 (125)
T ss_dssp ECSCCS
T ss_pred ecCCCC
Confidence 876543
No 67
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.73 E-value=7.1e-18 Score=104.44 Aligned_cols=69 Identities=23% Similarity=0.383 Sum_probs=63.1
Q ss_pred CEEEEEeCCCC--EEEEEEcCCCcHHHHHHHHHhh-hCCC-CCceEEEEcCEEcCCCCCcccc--ccccccceEE
Q 032747 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK-EGIP-PDQQRLIFAGKQLEDGRTLADY--NIQKESTLHL 69 (134)
Q Consensus 1 m~i~v~~~~g~--~~~~~v~~~~tv~~lK~~i~~~-~gi~-~~~q~L~~~g~~L~d~~~L~~~--~i~~~~~i~l 69 (134)
|+|+||..+|+ .+.+++++++||.+||++|++. .|.| +++|+|+|+|+.|+|+.+|++| ++.++++|+|
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihL 98 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHL 98 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEe
Confidence 68999999887 6789999999999999999986 4655 5999999999999999999999 9999999987
No 68
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=103.83 Aligned_cols=73 Identities=16% Similarity=0.307 Sum_probs=67.5
Q ss_pred EEEEE-eCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEee
Q 032747 2 QIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (134)
Q Consensus 2 ~i~v~-~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (134)
.|+|+ ..+++.+.++++++.||.+||++++..+++|+++|+|+|+|+.|.|+.+|++||+++|.+|||..+..
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~ 90 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFST 90 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEES
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecC
Confidence 45555 55788999999999999999999999999999999999999999999999999999999999998864
No 69
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.72 E-value=9.4e-18 Score=102.33 Aligned_cols=72 Identities=21% Similarity=0.412 Sum_probs=67.4
Q ss_pred CEEEEEeCCCCEEEE-EEcCCCcHHHHHHHHHhhhCCCCCceEEE---EcCEEcCCCCCccccccccccceEEEEEe
Q 032747 1 MQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (134)
Q Consensus 1 m~i~v~~~~g~~~~~-~v~~~~tv~~lK~~i~~~~gi~~~~q~L~---~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (134)
|+|+|+. +|+.+.+ ++++++||.+||++|++.+|+|+++|+|+ |+|+.|+|+.+|++|++.+|++|+++...
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 6899997 6889999 99999999999999999999999999999 99999999999999999999999987654
No 70
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=2e-17 Score=101.72 Aligned_cols=72 Identities=26% Similarity=0.389 Sum_probs=67.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCC-CCccccccccccceEEEEEeec
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 75 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~-~~L~~~~i~~~~~i~l~~~~~~ 75 (134)
|+|+|+..+|+.+.++|++++||.+||++|+... +++|+|+|+|+.|+|+ .+|++|++.+|++|++..+.+.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 7899999999999999999999999999999987 8899999999999999 9999999999999999887654
No 71
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=1.8e-17 Score=104.13 Aligned_cols=74 Identities=28% Similarity=0.401 Sum_probs=68.0
Q ss_pred CEEEEEeCCC---CEEEEEEcC---------CCcHHHHHHHHHhhh--CCCCCc-eEEEEcCEEcCCCCCcccccccccc
Q 032747 1 MQIFVKTLTG---KTITLEVES---------SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQKES 65 (134)
Q Consensus 1 m~i~v~~~~g---~~~~~~v~~---------~~tv~~lK~~i~~~~--gi~~~~-q~L~~~g~~L~d~~~L~~~~i~~~~ 65 (134)
|+|+||..++ +.+.+++++ ++||.+||++|+..+ |+|+++ |+|+|+|+.|+|+.+|++|++.+|+
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~ 92 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS 92 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence 6899999998 789999554 599999999999999 999999 9999999999999999999999999
Q ss_pred ceEEEEEee
Q 032747 66 TLHLVLRLR 74 (134)
Q Consensus 66 ~i~l~~~~~ 74 (134)
+|++..+..
T Consensus 93 ~i~lv~~~~ 101 (107)
T 1x1m_A 93 TVHVLRKSW 101 (107)
T ss_dssp EEEEEESSC
T ss_pred EEEEEeCCC
Confidence 999988753
No 72
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=2.1e-17 Score=101.95 Aligned_cols=71 Identities=17% Similarity=0.292 Sum_probs=66.0
Q ss_pred CEEEEEeCCCCEE-EEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEe
Q 032747 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (134)
Q Consensus 1 m~i~v~~~~g~~~-~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (134)
|+|+|+. .|+.+ .+++++++||.+||++|++.+|+|+++|+|+|.|+.|+|+ +|++|+|.+|++|+++.+.
T Consensus 8 m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~ 79 (96)
T 1wgg_A 8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSA 79 (96)
T ss_dssp EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCC
T ss_pred EEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecc
Confidence 6889996 67889 6999999999999999999999999999999999999999 9999999999999987654
No 73
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=4.2e-17 Score=99.72 Aligned_cols=72 Identities=24% Similarity=0.433 Sum_probs=65.9
Q ss_pred CEEEEEeCCCCEEEEEEcCC-----CcHHHHHHHHHhhhCCCCCceEEEEcCEEcCC-CCCccccccccccceEEEEEe
Q 032747 1 MQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLRL 73 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~-----~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d-~~~L~~~~i~~~~~i~l~~~~ 73 (134)
|+|+|+. .|+.+.++++++ +||.+||++|++.+|+|+++|+|+|+|+.|.| +.+|++|++.+|++|++..+.
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~ 85 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK 85 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecC
Confidence 6889998 478999999995 99999999999999999999999999999988 568999999999999987654
No 74
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=4.3e-17 Score=98.96 Aligned_cols=69 Identities=23% Similarity=0.303 Sum_probs=63.2
Q ss_pred CEEEEEeCCCCEE--EE-EEcCCCcHHHHHHHHHhh-hCCCCCceEEEEc--CEEcCCCCCccccccccccceEE
Q 032747 1 MQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQDK-EGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 69 (134)
Q Consensus 1 m~i~v~~~~g~~~--~~-~v~~~~tv~~lK~~i~~~-~gi~~~~q~L~~~--g~~L~d~~~L~~~~i~~~~~i~l 69 (134)
|+|+|+++.|+.+ .+ +|++++||.+||++|++. .|+|+++|+|.|. |+.|+|+.+|++|++.++++|++
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 7899999988775 58 999999999999999994 8999999999976 89999999999999999999875
No 75
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=2.2e-17 Score=101.64 Aligned_cols=71 Identities=20% Similarity=0.332 Sum_probs=64.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEe
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (134)
|+|+|+. +|+.+.+++++++||.+||++|++.+|+|+++|+|+|.|+.|+ +.+|++|++.++++|+++.+.
T Consensus 18 ~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 18 VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DKTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp EEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SSBHHHHCCCTTEEEEECCSS
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cCcHHHCCCCCCCEEEEEecc
Confidence 5788885 6789999999999999999999999999999999999999994 559999999999999986553
No 76
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.66 E-value=1.6e-16 Score=95.99 Aligned_cols=73 Identities=16% Similarity=0.259 Sum_probs=63.0
Q ss_pred EEEEEeC--CCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEE-------cCEEcCCCCCccccccccccceEEEEE
Q 032747 2 QIFVKTL--TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 2 ~i~v~~~--~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~-------~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
+|.|... +.+.+.+.+++++||.+||++|+..+|+|++.|+|+| .|+.++|+++|++|++.+|++||+.-+
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 4555443 4566789999999999999999999999999999997 477899999999999999999999765
Q ss_pred ee
Q 032747 73 LR 74 (134)
Q Consensus 73 ~~ 74 (134)
.|
T Consensus 84 ~P 85 (86)
T 4b6w_A 84 QP 85 (86)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 77
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.66 E-value=2.6e-16 Score=114.70 Aligned_cols=73 Identities=96% Similarity=1.295 Sum_probs=69.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEe
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (134)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++.+++
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999998774
No 78
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1e-16 Score=99.24 Aligned_cols=72 Identities=19% Similarity=0.298 Sum_probs=64.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEE--cCEEcCCCCCccccccccccceEEEEEe
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRL 73 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~--~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (134)
|.++++...|+.+.+++++++||.+||++|++.+|+||++|+|++ .|+ |+|+.+|++|++++|+++++....
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecC
Confidence 456677778999999999999999999999999999999999986 456 999999999999999999987664
No 79
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.66 E-value=6.2e-18 Score=115.22 Aligned_cols=73 Identities=29% Similarity=0.398 Sum_probs=1.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeeccee
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTM 78 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~ 78 (134)
|+|+|++++|+.+.++|++++||.+||++|+...|+|+++|+|+|+|+.|+|+.+|+ ++++|+|.+++.||..
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~~ 73 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGKK 73 (189)
T ss_dssp ----------------------------------------------------------------------------CC
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCcc
Confidence 899999999999999999999999999999999999999999999999999999998 7899999999988753
No 80
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.66 E-value=5.8e-16 Score=95.16 Aligned_cols=69 Identities=14% Similarity=0.213 Sum_probs=61.4
Q ss_pred EEEEEeCCCC--EEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEc--CE---Ec-CCCCCccccccccccceEEE
Q 032747 2 QIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---QL-EDGRTLADYNIQKESTLHLV 70 (134)
Q Consensus 2 ~i~v~~~~g~--~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~--g~---~L-~d~~~L~~~~i~~~~~i~l~ 70 (134)
.|+|+...+. .+.+++++++||.+||++|+..+|+|+++|+|+|. |+ .| +|+++|++|++.+|++|++.
T Consensus 17 ~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 17 KVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred EEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 5778876654 78899999999999999999999999999999997 45 45 89999999999999999985
No 81
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=1.2e-15 Score=93.59 Aligned_cols=77 Identities=17% Similarity=0.398 Sum_probs=73.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecce
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 77 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 77 (134)
|.|+|+..+|+.+.+.|.+++++..|+++++++.|++++.++|+|+|+.|.++.|+++|++.+|++|++..+..||.
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~ 84 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 84 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEESC
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999988874
No 82
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.62 E-value=1.3e-15 Score=93.81 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=61.7
Q ss_pred EEEEEeCCC--CEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcC---EE----cCCCCCccccccccccceEEEEE
Q 032747 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 2 ~i~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g---~~----L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
.+.|+.... ..+++++++++||.+||++|+..+|+|++.|+|+|.| +. ++|+++|++|++.+|++|++.-.
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd~ 95 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDL 95 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEEC
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEeC
Confidence 567776544 4688999999999999999999999999999999987 33 48999999999999999998643
No 83
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.61 E-value=8.4e-16 Score=114.69 Aligned_cols=76 Identities=32% Similarity=0.583 Sum_probs=69.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHh---hhCCCCCceEEEEcCEEcCCCCCccccccccccce-EEEEEeecc
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLRGG 76 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~---~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i-~l~~~~~~~ 76 (134)
|+|+||..+|+.+.++|++++||.+||++|+. ..|+|+++|+|+|+|+.|+|+++|++|+|++|++| ++..+..++
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~~~ 87 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAG 87 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCCSS
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCCCC
Confidence 78999999999999999999999999999999 56799999999999999999999999999999998 565555443
No 84
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.60 E-value=6.7e-15 Score=89.65 Aligned_cols=77 Identities=17% Similarity=0.398 Sum_probs=73.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecce
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 77 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 77 (134)
|.|+|++.+|+.+.+.|.+++++..|+++++++.|++++.++|+|+|+.|.++.|+++|++.+|++|++.....+|.
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~ 82 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 82 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999888775
No 85
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.59 E-value=7.6e-16 Score=96.66 Aligned_cols=71 Identities=21% Similarity=0.276 Sum_probs=64.8
Q ss_pred CEEEEEeCCCCEEEEEEc-CCCcHHHHHHHHHhhhCCCCCceEEEEcCE-----------E----cCCCCCccccccccc
Q 032747 1 MQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQKE 64 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~-~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~-----------~----L~d~~~L~~~~i~~~ 64 (134)
|.|+||+.+|.. .++|+ +++||.+||++|+..+++|+++|+|.+.|+ . ++|+.+|++||+.+|
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 789999999866 78999 999999999999999999999999998887 4 578899999999999
Q ss_pred cceEEEEE
Q 032747 65 STLHLVLR 72 (134)
Q Consensus 65 ~~i~l~~~ 72 (134)
++||+...
T Consensus 87 ~~L~l~~~ 94 (107)
T 1wf9_A 87 SMVYLAYE 94 (107)
T ss_dssp CEEECCCS
T ss_pred CEEEEEeC
Confidence 99998655
No 86
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=3.8e-15 Score=91.56 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=61.4
Q ss_pred EEEEEeCCCC-EEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcC---EE----cCCCCCccccccccccceEEEE
Q 032747 2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 2 ~i~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g---~~----L~d~~~L~~~~i~~~~~i~l~~ 71 (134)
.|+|+..+.. .+.+++++++||.+||++|+..+|+|+++|+|+|.| +. ++|+.+|++|++.+|++||+..
T Consensus 9 ~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 9 MVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 5778776543 688999999999999999999999999999999986 43 5899999999999999998854
No 87
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.58 E-value=3.2e-15 Score=90.45 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=52.9
Q ss_pred ccccccceEEEEEeecceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 60 NIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 60 ~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
|+.+++++++.++.+..+.++|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|.+
T Consensus 1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D 69 (88)
T 4eew_A 1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQD 69 (88)
T ss_dssp --------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCT
T ss_pred CCCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCC
Confidence 455678888888888889999999999999999999999999999999999999999999999999865
No 88
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.57 E-value=3.9e-15 Score=90.30 Aligned_cols=58 Identities=16% Similarity=0.122 Sum_probs=51.8
Q ss_pred EeecceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 72 RLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 72 ~~~~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
..+..++|+|++.+|+++.+.|++++||.+||++|++++|+|+++|+|+|+|++|.+.
T Consensus 17 ~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~ 74 (93)
T 3plu_A 17 RGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDH 74 (93)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTT
T ss_pred CCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCc
Confidence 3445689999999999999999999999999999999999999999999999998653
No 89
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.57 E-value=1.9e-14 Score=88.10 Aligned_cols=76 Identities=17% Similarity=0.403 Sum_probs=69.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecc
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (134)
|.|+|+..+|+.+.+.|.+++++..|+++++.+.|++++.++|+|+|+.|.++.|+++|++.+|++|++..+..||
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 4688898899999999999999999999999999999999999999999999999999999999999999887664
No 90
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.56 E-value=1.6e-14 Score=92.63 Aligned_cols=73 Identities=14% Similarity=0.238 Sum_probs=62.9
Q ss_pred CEEEEEeCCCC-EEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcC---E---E-cCCCCCccccccccccceEEEEE
Q 032747 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---Q-LEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 1 m~i~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g---~---~-L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
+.|+|+..++. .+.+++++++||.+||++|+..+|+|+++|+|.|.| + . ++|+.+|++|++.+|++||+...
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~ 86 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV 86 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeC
Confidence 35778776553 678999999999999999999999999999999987 3 2 47899999999999999998764
Q ss_pred e
Q 032747 73 L 73 (134)
Q Consensus 73 ~ 73 (134)
.
T Consensus 87 ~ 87 (122)
T 1t0y_A 87 T 87 (122)
T ss_dssp T
T ss_pred C
Confidence 3
No 91
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.56 E-value=2.5e-14 Score=83.56 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=67.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEE
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 70 (134)
|.|.|++.+|+.+.+.+.+++++..|+++++++.|++++.++|+|+|+.|.++.|++++++.+|++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 5789999999999999999999999999999999999999999999999999999999999999999985
No 92
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.55 E-value=5.8e-15 Score=89.11 Aligned_cols=71 Identities=24% Similarity=0.352 Sum_probs=62.8
Q ss_pred CEEEEEeCCCCEEEEE-EcCCCcHHHHHHHHHhhhCCCCCceEEEEc--CEEcC---CCCCccccccccccceEEEEE
Q 032747 1 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~-v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~--g~~L~---d~~~L~~~~i~~~~~i~l~~~ 72 (134)
|+|+|++.+|+. .+. +++++||.+||++|++.+|+|+++|+|.|+ ++.|+ |+.+|++||+.+|++|++...
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 899999999955 477 999999999999999999999999999987 47774 678999999999999987543
No 93
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.51 E-value=3.1e-14 Score=88.68 Aligned_cols=77 Identities=16% Similarity=0.371 Sum_probs=72.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecce
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 77 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 77 (134)
|.|+|+..+|+.+.+.|.+++++..|+++++.+.|++++.++|+|+|+.|.++.|+.+|++.+|++|++.....||.
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGP 101 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCS
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999998877763
No 94
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.51 E-value=9.7e-14 Score=86.56 Aligned_cols=75 Identities=13% Similarity=0.339 Sum_probs=69.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecc
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (134)
|.|+|+. +|+.+.+.|.+++++..|+++++++.|++++.++|+|+|+.|.++.|.++|++.+|++|++..+..||
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 5788898 89999999999999999999999999999999999999999999999999999999999999887664
No 95
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.50 E-value=1.7e-13 Score=81.42 Aligned_cols=70 Identities=10% Similarity=0.274 Sum_probs=66.6
Q ss_pred CEEEEEeCCCC-EEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEE
Q 032747 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (134)
Q Consensus 1 m~i~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 70 (134)
|.|+|+..+|+ .+.+.|.+++++..|+++++++.|++++.++|+|+|+.|.++.|+++|++.+|++|++.
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 57899999996 89999999999999999999999999999999999999999999999999999999874
No 96
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.49 E-value=3.8e-14 Score=89.00 Aligned_cols=78 Identities=15% Similarity=0.396 Sum_probs=72.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeeccee
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTM 78 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~ 78 (134)
|.|+|+..+|+.+.+.|.+++++..|+++++++.|++++.++|+|+|+.|.++.|+++|++.+|++|++.....+|..
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~~ 104 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGLE 104 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC--
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCccc
Confidence 578999999999999999999999999999999999999999999999999999999999999999999998877753
No 97
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.48 E-value=2.9e-14 Score=104.87 Aligned_cols=74 Identities=22% Similarity=0.437 Sum_probs=65.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEE---EcCEEcCCCCCccccccccccceEEEEEeec
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~---~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 75 (134)
|.|+|+. +|+.+.+++++++||.+||++|++.+|+|+++|+|+ |+|+.|+|+.+|++|+|++|++|+|+.+...
T Consensus 6 i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~ 82 (320)
T 3shq_A 6 VVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEA 82 (320)
T ss_dssp EEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC-
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchh
Confidence 4688886 689999999999999999999999999999999999 8999999999999999999999999876543
No 98
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.46 E-value=1e-13 Score=85.48 Aligned_cols=52 Identities=15% Similarity=0.128 Sum_probs=49.7
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
+.|+|++++|++++++|++++||.+||++|++++|+|+++|+|+|.|++|.+
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D 80 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKD 80 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCS
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCC
Confidence 7889999999999999999999999999999999999999999999999854
No 99
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.46 E-value=8.1e-14 Score=84.17 Aligned_cols=53 Identities=19% Similarity=0.330 Sum_probs=49.1
Q ss_pred eeeeeeecCCcEEEEEec--cCCcHHHHHHHh-hhhcCCCCCcceEEeCCeEEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIE--PTDTIERIKERV-EEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~--~~~tV~~lK~~i-~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
+.++|++.+|++++++|+ +++||.+||++| ++.+|+|+++|+|+|+|++|.+.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~ 57 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDN 57 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTT
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCc
Confidence 678999999999999876 999999999999 99999999999999999998653
No 100
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.44 E-value=2.1e-13 Score=80.74 Aligned_cols=54 Identities=19% Similarity=0.182 Sum_probs=51.0
Q ss_pred cceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
..+.++|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|.+
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d 56 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLED 56 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCT
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCC
Confidence 457899999999999999999999999999999999999999999999999865
No 101
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.41 E-value=4.8e-13 Score=80.32 Aligned_cols=53 Identities=23% Similarity=0.409 Sum_probs=49.8
Q ss_pred ceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeE-EEE
Q 032747 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFI-LFY 128 (134)
Q Consensus 76 ~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~-l~~ 128 (134)
-+.+++++.+|++++++|++++||++||++|++.+|+|+++|+|+|.|+. |.+
T Consensus 10 ~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D 63 (84)
T 2kk8_A 10 HMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILRE 63 (84)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCS
T ss_pred ceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCC
Confidence 37899999999999999999999999999999999999999999999998 743
No 102
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.41 E-value=9.3e-13 Score=81.05 Aligned_cols=71 Identities=17% Similarity=0.238 Sum_probs=61.0
Q ss_pred EEEEEe---CCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcC-------EEc-CCCCCccccccccccceEEE
Q 032747 2 QIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLHLV 70 (134)
Q Consensus 2 ~i~v~~---~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g-------~~L-~d~~~L~~~~i~~~~~i~l~ 70 (134)
.|+|+. .+|+.+...+++++||.+||.+|++.+|+|+..|+|.|.+ ..| +|..+|++|++.+|++|++.
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~ 90 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR 90 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEE
Confidence 466665 4678899999999999999999999999999999999873 235 67789999999999999987
Q ss_pred EE
Q 032747 71 LR 72 (134)
Q Consensus 71 ~~ 72 (134)
..
T Consensus 91 d~ 92 (97)
T 1wjn_A 91 WS 92 (97)
T ss_dssp CC
T ss_pred ec
Confidence 64
No 103
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.39 E-value=7.5e-13 Score=80.25 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=50.6
Q ss_pred cceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
..+.++|++.+|+++.++|.+++||.+||++|++.+|+|+++|+|+|+|+.|.+
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d 57 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQD 57 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCT
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCC
Confidence 347889999999999999999999999999999999999999999999999864
No 104
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.38 E-value=7.8e-13 Score=80.00 Aligned_cols=52 Identities=71% Similarity=0.928 Sum_probs=49.2
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
|.++|++.+|++++++|++++||++||++|++.+|+|+++|+|+|+|+.|.+
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D 52 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMND 52 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCT
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCC
Confidence 4688999999999999999999999999999999999999999999999864
No 105
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.37 E-value=2.7e-13 Score=84.08 Aligned_cols=73 Identities=26% Similarity=0.398 Sum_probs=47.0
Q ss_pred CCCccccccccccceEEEEEeecceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 53 GRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 53 ~~~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
...+++|.+. ++.++.......+.+.|++ +|+.+.++|++++||++||++|++.+|+|+++|+|+|+|+.|.+
T Consensus 7 ~~~~~~~~~~--~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D 79 (101)
T 3m63_B 7 HHPMSDYDIP--TTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKD 79 (101)
T ss_dssp ------------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCT
T ss_pred cCCccccCCC--cceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCC
Confidence 3567888875 5555555544446667776 88999999999999999999999999999999999999999864
No 106
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.37 E-value=1.2e-12 Score=80.70 Aligned_cols=55 Identities=20% Similarity=0.361 Sum_probs=48.6
Q ss_pred ecceeeeeeecCCcEEEE--EeccCCcHHHHHHHh-hhhcCCCCCcceEEeCCeEEEE
Q 032747 74 RGGTMIKVKTLTGKEIEI--DIEPTDTIERIKERV-EEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 74 ~~~~~i~v~~~~~~~~~~--~V~~~~tV~~lK~~i-~~~~gip~~~q~L~~~g~~l~~ 128 (134)
.+.+.++|++.+|+.+++ +|.+++||++||++| ++.+|+|+++|+|+|+|++|.+
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D 74 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHD 74 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECT
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcC
Confidence 456889999999998777 556999999999999 8899999999999999999864
No 107
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.37 E-value=1.1e-12 Score=77.33 Aligned_cols=54 Identities=20% Similarity=0.366 Sum_probs=49.5
Q ss_pred cceeeeeeecCCcEE-EEE-eccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 75 GGTMIKVKTLTGKEI-EID-IEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 75 ~~~~i~v~~~~~~~~-~~~-V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
|++.++|++.+|+++ +++ |++++||++||++|++.+|+|+++|+|+|.|+.|.+
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d 56 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMED 56 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCC
Confidence 468899999999985 999 999999999999999999999999999999999853
No 108
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.36 E-value=1.1e-12 Score=79.33 Aligned_cols=54 Identities=19% Similarity=0.182 Sum_probs=50.3
Q ss_pred cceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
+.+.++|++.+|+++.++|++++||++||.+|++.+|+|+++|+|+|.|+.|.+
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D 56 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLED 56 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCT
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCC
Confidence 357899999999999999999999999999999999999999999999998853
No 109
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.36 E-value=1.3e-12 Score=78.95 Aligned_cols=54 Identities=44% Similarity=0.688 Sum_probs=50.1
Q ss_pred cceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
.|+.+++++.+|+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|.+
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D 61 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLED 61 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCT
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCC
Confidence 579999999999999999999999999999999999999999999999999854
No 110
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.35 E-value=2.1e-12 Score=78.45 Aligned_cols=55 Identities=45% Similarity=0.658 Sum_probs=50.8
Q ss_pred cceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
..+.++|++.+|+++.++|.+++||.+||.+|++.+|+|+++|+|+|+|+.|.++
T Consensus 16 ~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~ 70 (91)
T 3v6c_B 16 GSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 70 (91)
T ss_dssp CSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTT
T ss_pred CeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCc
Confidence 3478899999999999999999999999999999999999999999999998653
No 111
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.34 E-value=3.6e-12 Score=76.63 Aligned_cols=55 Identities=27% Similarity=0.434 Sum_probs=51.0
Q ss_pred ecceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 74 ~~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
++.+.++|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|.|+.|.+
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d 59 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQD 59 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCS
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccC
Confidence 3457889999999999999999999999999999999999999999999999854
No 112
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.33 E-value=4.2e-12 Score=77.71 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=49.4
Q ss_pred cceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
.++.++|++.++ +++++|++++||++||++|++.+|+|+++|+|+|.|++|.+.
T Consensus 14 ~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~ 67 (94)
T 2kan_A 14 RKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADD 67 (94)
T ss_dssp CCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCT
T ss_pred CCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCC
Confidence 457889999887 899999999999999999999999999999999999998654
No 113
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.33 E-value=2.7e-12 Score=77.31 Aligned_cols=54 Identities=70% Similarity=0.937 Sum_probs=50.4
Q ss_pred cceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
..+.++|++.+|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|.+
T Consensus 11 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d 64 (88)
T 3dbh_I 11 GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMND 64 (88)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCT
T ss_pred CcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCC
Confidence 347889999999999999999999999999999999999999999999999864
No 114
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.33 E-value=3e-12 Score=78.91 Aligned_cols=43 Identities=12% Similarity=0.091 Sum_probs=41.0
Q ss_pred CcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 86 GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 86 ~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
++.++++|++++||++||++|++++|+|+++|+|+|+|++|.+
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D 71 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQL 71 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCT
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCC
Confidence 7799999999999999999999999999999999999999854
No 115
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.32 E-value=4.5e-12 Score=75.86 Aligned_cols=55 Identities=27% Similarity=0.421 Sum_probs=50.4
Q ss_pred ecceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhh---cCCCCCcceEEeCCeEEEE
Q 032747 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEK---EGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 74 ~~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~---~gip~~~q~L~~~g~~l~~ 128 (134)
+..+.++|++.+|+.++++|++++||++||++|++. +|+|+++|+|+|+|+.|.+
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D 60 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSD 60 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCT
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcC
Confidence 456889999999999999999999999999999997 8999999999999999854
No 116
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.32 E-value=3.2e-12 Score=75.55 Aligned_cols=52 Identities=19% Similarity=0.318 Sum_probs=49.4
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
+.++|++.+|+.+.++|.+++||.+||++|++++|+|+++|+|+|+|+.|.+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d 55 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIAD 55 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCT
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCC
Confidence 6789999999999999999999999999999999999999999999999864
No 117
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.31 E-value=3.6e-12 Score=78.03 Aligned_cols=54 Identities=50% Similarity=0.698 Sum_probs=50.1
Q ss_pred ceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 76 ~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
||.++|++.+|+.+.++|++++||.+||++|++.+|+|++.|+|+|+|+.|.++
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~ 54 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 54 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCC
Confidence 478999999999999999999999999999999999999999999999998643
No 118
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.31 E-value=3.4e-12 Score=78.55 Aligned_cols=55 Identities=18% Similarity=0.266 Sum_probs=51.0
Q ss_pred ecceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 74 ~~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
...+.|+|++.+|+++.++|.+++||.+||.+|+++.|+|+++|+|+|.|+.|.+
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d 73 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIAD 73 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCT
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCC
Confidence 3447889999999999999999999999999999999999999999999999864
No 119
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.31 E-value=2.7e-12 Score=80.20 Aligned_cols=52 Identities=17% Similarity=0.279 Sum_probs=48.8
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
+.++|++.+|+.+.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|.+
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D 53 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQD 53 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCT
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCC
Confidence 5789999999999999999999999999999999999999999999999865
No 120
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=8.2e-12 Score=73.96 Aligned_cols=54 Identities=28% Similarity=0.419 Sum_probs=49.6
Q ss_pred cceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
..+.++|++.+|+.+.++|++++||++||++|++.+|+|+++|+|+|+|+.|.+
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d 59 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALAD 59 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCT
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCC
Confidence 347788888889999999999999999999999999999999999999999853
No 121
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.30 E-value=4.8e-12 Score=77.97 Aligned_cols=54 Identities=44% Similarity=0.625 Sum_probs=50.1
Q ss_pred cceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
..+.++|++.+|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|.+
T Consensus 21 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D 74 (98)
T 4hcn_B 21 RPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLED 74 (98)
T ss_dssp -CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCT
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCC
Confidence 347889999999999999999999999999999999999999999999999864
No 122
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.29 E-value=5.6e-12 Score=73.64 Aligned_cols=52 Identities=71% Similarity=0.928 Sum_probs=48.7
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
|.++|++.+|+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|.+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d 52 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMND 52 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCC
Confidence 4688999999999999999999999999999999999999999999999854
No 123
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.29 E-value=2.5e-11 Score=76.41 Aligned_cols=73 Identities=16% Similarity=0.408 Sum_probs=68.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEe
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (134)
+.|.|+..+|....+.|.+++++..|++..+++.|+++..++|+|+|++|.++.|..++++.+|++|++....
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence 4678888889999999999999999999999999999999999999999999999999999999999998753
No 124
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.29 E-value=1e-11 Score=78.56 Aligned_cols=55 Identities=22% Similarity=0.221 Sum_probs=49.2
Q ss_pred cceeeeeeecCCcEEEEEeccCCcHHHHHHHhhh------hcCC--CCCcceEEeCCeEEEEE
Q 032747 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEE------KEGI--PPVQQRYPIQSFILFYF 129 (134)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~------~~gi--p~~~q~L~~~g~~l~~~ 129 (134)
..+.|+|++.+|++++++|++++||++||++|++ .+|+ |+++|+|+|.|++|.+.
T Consensus 15 ~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~ 77 (116)
T 1wgh_A 15 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGN 77 (116)
T ss_dssp SSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSS
T ss_pred CeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCC
Confidence 3477899999999999999999999999999999 5675 69999999999999654
No 125
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.28 E-value=4.7e-12 Score=80.17 Aligned_cols=51 Identities=24% Similarity=0.142 Sum_probs=45.0
Q ss_pred eeeeeecCCc-EEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 78 MIKVKTLTGK-EIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 78 ~i~v~~~~~~-~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
.++++...++ ++.++|.+++||++||++|++.+|||+++|+|+|+|+.|.+
T Consensus 2 ~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD 53 (118)
T 2fnj_B 2 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDD 53 (118)
T ss_dssp EEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCT
T ss_pred cEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCC
Confidence 4566666554 69999999999999999999999999999999999998864
No 126
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.28 E-value=8.6e-12 Score=74.47 Aligned_cols=53 Identities=49% Similarity=0.694 Sum_probs=49.7
Q ss_pred ceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 76 ~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
.+.++|++.+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|.+
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d 55 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 55 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCT
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCC
Confidence 36788999999999999999999999999999999999999999999999864
No 127
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.28 E-value=1.1e-11 Score=76.46 Aligned_cols=54 Identities=17% Similarity=0.126 Sum_probs=46.6
Q ss_pred cceeeeeeecCCc--EEEEEeccCCcHHHHHHHhhhh-cCCC-CCcceEEeCCeEEEE
Q 032747 75 GGTMIKVKTLTGK--EIEIDIEPTDTIERIKERVEEK-EGIP-PVQQRYPIQSFILFY 128 (134)
Q Consensus 75 ~~~~i~v~~~~~~--~~~~~V~~~~tV~~lK~~i~~~-~gip-~~~q~L~~~g~~l~~ 128 (134)
+.+.++|++++++ +++++|++++||++||++|++. +|+| +++|+|+|.|++|.+
T Consensus 22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D 79 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPD 79 (99)
T ss_dssp -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECT
T ss_pred CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCC
Confidence 4578899999887 6799999999999999999985 5666 499999999999964
No 128
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.27 E-value=6.7e-12 Score=75.01 Aligned_cols=54 Identities=44% Similarity=0.616 Sum_probs=49.6
Q ss_pred ceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 76 ~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
.+.++|++.+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|.++
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~ 56 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 56 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTT
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCC
Confidence 367889999999999999999999999999999999999999999999998643
No 129
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.27 E-value=1.5e-11 Score=74.18 Aligned_cols=54 Identities=33% Similarity=0.390 Sum_probs=49.4
Q ss_pred cceeeeeeecCC-cEEEE-EeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 75 GGTMIKVKTLTG-KEIEI-DIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 75 ~~~~i~v~~~~~-~~~~~-~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
..+.++|++.+| +++.+ +|++++||.+||++|++.+|+|+++|+|+|.|+.|.+
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d 61 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLEN 61 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCS
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCC
Confidence 347889999998 69999 5999999999999999999999999999999999854
No 130
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.27 E-value=1.2e-11 Score=75.71 Aligned_cols=52 Identities=29% Similarity=0.501 Sum_probs=48.6
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhh---cCCCCCcceEEeCCeEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEK---EGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~---~gip~~~q~L~~~g~~l~~ 128 (134)
|.++|++.+|+.++++|++++||++||.+|++. +|+|+++|+|+|+|+.|.+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D 55 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILND 55 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCT
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCC
Confidence 468899999999999999999999999999999 8999999999999999854
No 131
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.26 E-value=1.2e-11 Score=72.27 Aligned_cols=52 Identities=50% Similarity=0.716 Sum_probs=48.6
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
|.++|++.+|+.+.++|++++||++||++|++.+|+|++.|+|+|+|+.|.+
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d 52 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 52 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCC
Confidence 4688999999999999999999999999999999999999999999998854
No 132
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.25 E-value=9.8e-12 Score=78.48 Aligned_cols=52 Identities=23% Similarity=0.100 Sum_probs=45.5
Q ss_pred eeeeeecCCc-EEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 78 MIKVKTLTGK-EIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 78 ~i~v~~~~~~-~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
.++++...++ ++.++|.+++||.+||++|+..+|||+++|+|+|+|++|.+.
T Consensus 2 ~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~ 54 (118)
T 4ajy_B 2 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDG 54 (118)
T ss_dssp EEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT
T ss_pred ceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCc
Confidence 4566665554 889999999999999999999999999999999999998653
No 133
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.25 E-value=1.6e-11 Score=74.83 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=47.8
Q ss_pred cceeeeeeecCCc--EEEEEeccCCcHHHHHHHhhhhc--CCCCCcceEEeCCeEEEE
Q 032747 75 GGTMIKVKTLTGK--EIEIDIEPTDTIERIKERVEEKE--GIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 75 ~~~~i~v~~~~~~--~~~~~V~~~~tV~~lK~~i~~~~--gip~~~q~L~~~g~~l~~ 128 (134)
..+.++|++.+++ .++++|.+++||++||++|++.+ |+|+++|+|+|.|++|.+
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D 63 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLD 63 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCS
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcC
Confidence 3467888888887 67777889999999999999998 999999999999999854
No 134
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.25 E-value=1.4e-11 Score=77.50 Aligned_cols=53 Identities=49% Similarity=0.706 Sum_probs=49.6
Q ss_pred ceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 76 ~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
.+.++|++.+|+.+.++|.+++||.+||.+|++.+|+|+++|+|+|+|+.|.+
T Consensus 35 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D 87 (111)
T 3vdz_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 87 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT
T ss_pred cEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCC
Confidence 36788999999999999999999999999999999999999999999999864
No 135
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.24 E-value=6.5e-13 Score=90.48 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=0.0
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
|.|+|++++|++++++|++++||.+||.+|++.+|||+++|+|+|.|++|.+.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~ 53 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNT 53 (189)
T ss_dssp -----------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCC
Confidence 46899999999999999999999999999999999999999999999999764
No 136
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.24 E-value=1.9e-11 Score=76.28 Aligned_cols=54 Identities=26% Similarity=0.402 Sum_probs=50.1
Q ss_pred cceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
..+.++|++.+|+.+.++|.+++||++||.+|++.+|+|+++|+|+|.|+.|.+
T Consensus 22 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D 75 (106)
T 1ttn_A 22 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTD 75 (106)
T ss_dssp CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCT
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCC
Confidence 347889999999999999999999999999999999999999999999999853
No 137
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.24 E-value=1.5e-11 Score=77.84 Aligned_cols=54 Identities=44% Similarity=0.629 Sum_probs=51.0
Q ss_pred cceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
+...+++++.+|++++++|++++||++||.+|++.+|+|+++|+|+|+|+.|.+
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D 61 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLED 61 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCC
Confidence 567899999999999999999999999999999999999999999999999853
No 138
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.24 E-value=1.8e-11 Score=71.73 Aligned_cols=51 Identities=27% Similarity=0.422 Sum_probs=47.7
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
+.++|++ +|+.++++|++++||++||.+|++.+|+|+++|+|+|+|+.|.+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d 55 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKD 55 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCC
Confidence 6788888 89999999999999999999999999999999999999998854
No 139
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.24 E-value=9.1e-12 Score=79.85 Aligned_cols=53 Identities=23% Similarity=0.236 Sum_probs=48.3
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhh------hcCCC--CCcceEEeCCeEEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEE------KEGIP--PVQQRYPIQSFILFYF 129 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~------~~gip--~~~q~L~~~g~~l~~~ 129 (134)
+.+++++.+|++++++|++++||++||++|++ .+|+| +++|+|+|.|++|.+.
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~ 78 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGN 78 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESS
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCC
Confidence 66788899999999999999999999999998 67884 8999999999999754
No 140
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.23 E-value=1.2e-11 Score=77.93 Aligned_cols=53 Identities=49% Similarity=0.706 Sum_probs=49.5
Q ss_pred ceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 76 ~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
.+.++|++.+|+.+.++|++++||++||.+|++.+|+|+++|+|+|+|+.|.+
T Consensus 35 ~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D 87 (111)
T 2ojr_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 87 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCS
T ss_pred eEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCC
Confidence 47788999899999999999999999999999999999999999999999854
No 141
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.23 E-value=1.6e-11 Score=74.96 Aligned_cols=53 Identities=25% Similarity=0.312 Sum_probs=46.8
Q ss_pred ecceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 74 ~~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
+..+.++|++ |+.+.++|++++||++||++|++.+|+|+++|+|+|+|+.|.+
T Consensus 17 ~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D 69 (93)
T 2l7r_A 17 RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLED 69 (93)
T ss_dssp ---CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCT
T ss_pred CCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCC
Confidence 3447788888 7899999999999999999999999999999999999999853
No 142
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.23 E-value=2.1e-11 Score=74.99 Aligned_cols=52 Identities=50% Similarity=0.716 Sum_probs=48.7
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
|.++|++.+|+++.++|++++||++||.+|++.+|+|+++|+|+|+|+.|.+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D 52 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 52 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCT
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCC
Confidence 4688999999999999999999999999999999999999999999999854
No 143
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.22 E-value=2.6e-11 Score=82.86 Aligned_cols=56 Identities=48% Similarity=0.657 Sum_probs=52.3
Q ss_pred eecceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 73 LRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 73 ~~~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
....++++|++.+|++++++|++++||++||++|++.+|+|+++|+|+|+|+.|.+
T Consensus 102 d~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D 157 (189)
T 3q3f_A 102 DHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 157 (189)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCT
T ss_pred cccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCC
Confidence 34568999999999999999999999999999999999999999999999999865
No 144
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.21 E-value=2.5e-11 Score=81.73 Aligned_cols=52 Identities=46% Similarity=0.666 Sum_probs=49.4
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
|+++|++.+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|.+
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D 52 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLED 52 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCT
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccC
Confidence 4689999999999999999999999999999999999999999999999864
No 145
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.20 E-value=3.9e-11 Score=74.27 Aligned_cols=58 Identities=16% Similarity=0.071 Sum_probs=49.5
Q ss_pred EEEeecceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 70 VLRLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 70 ~~~~~~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
.+.....+.++|++. |+.+.++|++++||++||.+|++.+|+|+++|+|+|.|+.|.+
T Consensus 19 ~~~~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D 76 (101)
T 2klc_A 19 FQGHPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKD 76 (101)
T ss_dssp ----CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECT
T ss_pred cCCCCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCC
Confidence 334455678888888 7899999999999999999999999999999999999999854
No 146
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=98.83 E-value=1.5e-12 Score=76.39 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=49.2
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
|.++|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|.+.
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~ 53 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNH 53 (76)
Confidence 46789999999999999999999999999999999999999999999998654
No 147
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.20 E-value=3.5e-11 Score=76.95 Aligned_cols=55 Identities=24% Similarity=0.237 Sum_probs=48.6
Q ss_pred cceeeeeeecCCcEE-EEEeccCCcHHHHHHHh-----hhhcCCCC--CcceEEeCCeEEEEE
Q 032747 75 GGTMIKVKTLTGKEI-EIDIEPTDTIERIKERV-----EEKEGIPP--VQQRYPIQSFILFYF 129 (134)
Q Consensus 75 ~~~~i~v~~~~~~~~-~~~V~~~~tV~~lK~~i-----~~~~gip~--~~q~L~~~g~~l~~~ 129 (134)
.-+.+++++.+|+.+ .+++++++||++||++| ++.+|+|+ ++|+|+|.|++|.+.
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~ 77 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENS 77 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTT
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCC
Confidence 447889999999888 79999999999999999 56778997 899999999998643
No 148
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.19 E-value=5.7e-11 Score=73.72 Aligned_cols=51 Identities=24% Similarity=0.302 Sum_probs=45.4
Q ss_pred eeeeeeecCC--cEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEE
Q 032747 77 TMIKVKTLTG--KEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILF 127 (134)
Q Consensus 77 ~~i~v~~~~~--~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~ 127 (134)
+.++|+...+ .+++++|++++||++||++|++++|||+++|||+|+|+++.
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~ 77 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLAR 77 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEcc
Confidence 4566777663 79999999999999999999999999999999999999764
No 149
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.18 E-value=4.9e-11 Score=73.02 Aligned_cols=52 Identities=15% Similarity=0.038 Sum_probs=47.7
Q ss_pred ceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 76 ~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
.+.++|++. |+.+.++|++++||.+||.+|++.+|+|+++|+|+|.|+.|.+
T Consensus 17 ~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D 68 (96)
T 1wx8_A 17 IIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRD 68 (96)
T ss_dssp EEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCT
T ss_pred cEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCC
Confidence 367788887 8899999999999999999999999999999999999999853
No 150
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.18 E-value=7.2e-11 Score=73.16 Aligned_cols=54 Identities=15% Similarity=0.242 Sum_probs=47.5
Q ss_pred ceeeeeeecCC----cEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 76 GTMIKVKTLTG----KEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 76 ~~~i~v~~~~~----~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
++.++|++.++ +.++++|++++||++||++|++.+|+|+++|+|+|.|+.|.++
T Consensus 7 ~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~ 64 (102)
T 1v5o_A 7 GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDD 64 (102)
T ss_dssp CEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCS
T ss_pred eEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCC
Confidence 36677777543 7999999999999999999999999999999999999998543
No 151
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.18 E-value=1.5e-11 Score=76.50 Aligned_cols=51 Identities=10% Similarity=0.132 Sum_probs=47.7
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCC---------------CcceEEeCCeEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPP---------------VQQRYPIQSFILF 127 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~---------------~~q~L~~~g~~l~ 127 (134)
|.++|++++|++++++|.+++||++||++|++.+|+|+ ++|+|+|+|+.|.
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~ 73 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLT 73 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEEC
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCcc
Confidence 78899999999999999999999999999999999988 4679999999985
No 152
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.17 E-value=3.8e-11 Score=75.49 Aligned_cols=56 Identities=21% Similarity=0.343 Sum_probs=50.3
Q ss_pred eecceeeeeeec---CCcEEEEEecc-CCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 73 LRGGTMIKVKTL---TGKEIEIDIEP-TDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 73 ~~~~~~i~v~~~---~~~~~~~~V~~-~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
.++.+.++|+++ +|+.++++|++ ++||++||.+|++.+|+|+++|+|+|.|++|.+
T Consensus 24 ~~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D 83 (111)
T 1we6_A 24 HPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKD 83 (111)
T ss_dssp CCSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCT
T ss_pred CCCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCC
Confidence 345678888888 88999999998 999999999999999999999999999998754
No 153
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.17 E-value=4.9e-11 Score=73.71 Aligned_cols=53 Identities=25% Similarity=0.192 Sum_probs=47.9
Q ss_pred cceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
..+.++|++.+|+ +.++|++++||++||++|++.+|+|+++|+|+|.|+.|.+
T Consensus 21 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D 73 (100)
T 1yqb_A 21 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKD 73 (100)
T ss_dssp TEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCT
T ss_pred CeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCC
Confidence 3477888888886 7999999999999999999999999999999999999853
No 154
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.16 E-value=8.8e-11 Score=70.44 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=45.7
Q ss_pred eeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 79 i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
.++++.+|+.+.++|++++||++||++|++.+|+|+++|+|+|+|+.|.+
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D 63 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVE 63 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCT
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCC
Confidence 45667789999999999999999999999999999999999999998853
No 155
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.15 E-value=7.2e-11 Score=72.42 Aligned_cols=51 Identities=14% Similarity=0.187 Sum_probs=45.9
Q ss_pred eeeeeeecCCcEE-EEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 77 TMIKVKTLTGKEI-EIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 77 ~~i~v~~~~~~~~-~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
+.++|+. .|+.+ .++|++++||.+||++|++.+|+|+++|+|+|.|+.|.+
T Consensus 8 m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D 59 (96)
T 1wgg_A 8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKD 59 (96)
T ss_dssp EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCS
T ss_pred EEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCC
Confidence 5677774 57899 699999999999999999999999999999999999864
No 156
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.14 E-value=9.7e-11 Score=70.98 Aligned_cols=52 Identities=23% Similarity=0.298 Sum_probs=46.8
Q ss_pred ceeeeeeecCCcEEEE-EeccCCcHHHHHHHhhhhcCCCCCcceEE---eCCeEEEE
Q 032747 76 GTMIKVKTLTGKEIEI-DIEPTDTIERIKERVEEKEGIPPVQQRYP---IQSFILFY 128 (134)
Q Consensus 76 ~~~i~v~~~~~~~~~~-~V~~~~tV~~lK~~i~~~~gip~~~q~L~---~~g~~l~~ 128 (134)
.+.++|+. .|+.+++ +|++++||++||++|++.+|+|+++|+|+ |.|+.|.+
T Consensus 7 ~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D 62 (90)
T 1v5t_A 7 GLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAEN 62 (90)
T ss_dssp SCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCT
T ss_pred eEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCC
Confidence 36677875 6889999 99999999999999999999999999999 99998753
No 157
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.14 E-value=2.8e-10 Score=78.15 Aligned_cols=76 Identities=13% Similarity=0.330 Sum_probs=70.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecce
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 77 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 77 (134)
+.|+|+. +|....+.+.+++++..|+...+++.|+++..++++|+|++|.++.|..++++.+|++|++.....+|.
T Consensus 30 I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 30 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp EEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred EEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 3577864 889999999999999999999999999999999999999999999999999999999999999987654
No 158
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.13 E-value=1.7e-10 Score=74.04 Aligned_cols=52 Identities=17% Similarity=0.119 Sum_probs=47.6
Q ss_pred ceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 76 ~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
.+.|+|++. |+.++++|++++||.+||.+|++.+|+|+++|+|+|.|+.|.+
T Consensus 32 ~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D 83 (125)
T 1j8c_A 32 IIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKD 83 (125)
T ss_dssp CEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEEST
T ss_pred cEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCC
Confidence 367788888 8899999999999999999999999999999999999999853
No 159
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.13 E-value=5e-12 Score=81.51 Aligned_cols=53 Identities=45% Similarity=0.621 Sum_probs=0.0
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
|.++|++.+|++++++|++++||++||.+|++.+|+|+++|+|+|+|+.|.+.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~ 53 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDG 53 (128)
T ss_dssp -----------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCC
Confidence 46789999999999999999999999999999999999999999999998764
No 160
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=99.11 E-value=1.7e-10 Score=78.19 Aligned_cols=76 Identities=12% Similarity=0.291 Sum_probs=70.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecce
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 77 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 77 (134)
+.|+|+ .+|..+.+.|.+++++..|++..+++.|+++..++++|+|+.|.++.|..++++.+|++|++.....||.
T Consensus 58 InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 58 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp EEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred EEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 356776 4889999999999999999999999999999999999999999999999999999999999999998875
No 161
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.10 E-value=8.7e-11 Score=71.92 Aligned_cols=49 Identities=14% Similarity=0.335 Sum_probs=44.4
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFIL 126 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l 126 (134)
+.++|+ ..++.+.++|.+++||++||++|++.+|+|+++|+|+|.|+.|
T Consensus 18 ~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L 66 (95)
T 1v86_A 18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP 66 (95)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC
Confidence 456666 4578999999999999999999999999999999999999988
No 162
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=2.2e-10 Score=70.67 Aligned_cols=48 Identities=17% Similarity=0.135 Sum_probs=43.2
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEe--CCe
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPI--QSF 124 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~--~g~ 124 (134)
+.+++...+|++++++|++++||++||++|++.+||||++|+|++ .|+
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk 58 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD 58 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC
Confidence 556777788999999999999999999999999999999999986 555
No 163
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.09 E-value=2.2e-10 Score=71.40 Aligned_cols=51 Identities=25% Similarity=0.237 Sum_probs=46.4
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
+.++|++.+++ +.++|++++||.+||.+|++.+|+|+++|+|+|.|+.|.+
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D 68 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKD 68 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCT
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCC
Confidence 67788888775 7999999999999999999999999999999999999853
No 164
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.09 E-value=8.9e-12 Score=82.50 Aligned_cols=53 Identities=45% Similarity=0.621 Sum_probs=0.0
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
|.|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|.+.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~ 53 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDG 53 (152)
T ss_dssp -----------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEcccc
Confidence 46789999999999999999999999999999999999999999999998764
No 165
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.09 E-value=4e-10 Score=68.39 Aligned_cols=52 Identities=17% Similarity=0.301 Sum_probs=46.1
Q ss_pred ceeeeeeecCCcEEEEEeccC-----CcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 76 GTMIKVKTLTGKEIEIDIEPT-----DTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 76 ~~~i~v~~~~~~~~~~~V~~~-----~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
.+.+.|++ .++.+.++|.++ .||++||++|++.+|+|+++|+|+|.|+.|.+
T Consensus 7 ~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D 63 (92)
T 1wxv_A 7 GLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKE 63 (92)
T ss_dssp SEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECC
T ss_pred eEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCC
Confidence 35677777 477899999995 99999999999999999999999999999865
No 166
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.08 E-value=3.7e-10 Score=71.41 Aligned_cols=45 Identities=22% Similarity=0.426 Sum_probs=42.1
Q ss_pred cCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 84 LTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 84 ~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
++|++++++|++++||.+||.+|++.+|+|+++|+|+|.|+.|.+
T Consensus 43 L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D 87 (115)
T 1we7_A 43 LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKD 87 (115)
T ss_dssp CSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECT
T ss_pred cCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCC
Confidence 468899999999999999999999999999999999999998853
No 167
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=99.07 E-value=1.6e-09 Score=62.87 Aligned_cols=70 Identities=16% Similarity=0.316 Sum_probs=64.1
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCC-ceEEEEcCEEcCCCCCccccccccccceEEEE
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~-~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (134)
.+.+++.....+.+.+.++++|.+|-.....+.|++++ ..+|.|.|..|+.+.++.+|++.+|+.|.+.+
T Consensus 11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 35567777778999999999999999999999999998 99999999999999999999999999998754
No 168
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.06 E-value=3.4e-10 Score=69.27 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=39.9
Q ss_pred eeeeeeecCC--cEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeC
Q 032747 77 TMIKVKTLTG--KEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQ 122 (134)
Q Consensus 77 ~~i~v~~~~~--~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~ 122 (134)
+.++|++..+ +.++++|++++||++||++|+..+|||+++|+|+|.
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~ 63 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVF 63 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEE
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 3455655543 589999999999999999999999999999999998
No 169
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=4e-10 Score=68.03 Aligned_cols=51 Identities=20% Similarity=0.232 Sum_probs=44.7
Q ss_pred eeeeeeecCCcEE--EE-EeccCCcHHHHHHHhhh-hcCCCCCcceEEeC--CeEEE
Q 032747 77 TMIKVKTLTGKEI--EI-DIEPTDTIERIKERVEE-KEGIPPVQQRYPIQ--SFILF 127 (134)
Q Consensus 77 ~~i~v~~~~~~~~--~~-~V~~~~tV~~lK~~i~~-~~gip~~~q~L~~~--g~~l~ 127 (134)
|.++|++..|+.+ ++ +|++++||++||++|++ ..|+|+++|+|+|. |+.|.
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~ 67 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLK 67 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCC
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcC
Confidence 6788999887765 57 89999999999999999 58999999999987 88874
No 170
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.99 E-value=1.8e-10 Score=68.31 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=58.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEE---c--CCCCCccccccccccceEEE
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV 70 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~---L--~d~~~L~~~~i~~~~~i~l~ 70 (134)
|.|.|++.+| .+.+++++++|+.+|+++|++.++++++.|.+.++..+ | .++.+|+++|+++|+.+++.
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 6788999887 66788999999999999999999999988888765433 3 36789999999999999864
No 171
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.99 E-value=1e-09 Score=67.37 Aligned_cols=45 Identities=13% Similarity=0.229 Sum_probs=38.9
Q ss_pred eeeeecC--CcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCC
Q 032747 79 IKVKTLT--GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQS 123 (134)
Q Consensus 79 i~v~~~~--~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g 123 (134)
+.|.... ++.++++|++++||++||++|+..+|||+++|+|+|.|
T Consensus 17 l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g 63 (97)
T 2kj6_A 17 LHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYD 63 (97)
T ss_dssp EEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEEC
T ss_pred EEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEec
Confidence 3444433 45899999999999999999999999999999999987
No 172
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.97 E-value=1.1e-09 Score=68.34 Aligned_cols=53 Identities=13% Similarity=0.020 Sum_probs=46.5
Q ss_pred ceeeeeeecCC---cEEEEEec--------c-CCcHHHHHHHhhhhc--CCCCCc-ceEEeCCeEEEE
Q 032747 76 GTMIKVKTLTG---KEIEIDIE--------P-TDTIERIKERVEEKE--GIPPVQ-QRYPIQSFILFY 128 (134)
Q Consensus 76 ~~~i~v~~~~~---~~~~~~V~--------~-~~tV~~lK~~i~~~~--gip~~~-q~L~~~g~~l~~ 128 (134)
.+.++|++.++ +.+.++|. + ++||.+||++|++.+ |+|+++ |+|+|.|+.|.+
T Consensus 12 ~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D 79 (107)
T 1x1m_A 12 DWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKD 79 (107)
T ss_dssp SCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCT
T ss_pred ceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCC
Confidence 46788888888 88999954 4 499999999999999 999999 999999999854
No 173
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=98.96 E-value=1.4e-09 Score=79.22 Aligned_cols=55 Identities=49% Similarity=0.718 Sum_probs=51.5
Q ss_pred ecceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 74 ~~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
.+.+.|+|++.+|+.+.++|++++||++||++|++.+|+|+++|+|+|.|++|.+
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D 285 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 285 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCT
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCC
Confidence 4668899999999999999999999999999999999999999999999999853
No 174
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.96 E-value=1.6e-09 Score=66.04 Aligned_cols=52 Identities=21% Similarity=0.190 Sum_probs=47.2
Q ss_pred cceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
..+.++|++.+|+.+.++|.+++||++||++|++.+ +++|+|+|.|+.|.++
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~ 57 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDP 57 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCS
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCC
Confidence 347788999999999999999999999999999987 8999999999998654
No 175
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.94 E-value=9.6e-11 Score=80.42 Aligned_cols=78 Identities=13% Similarity=0.319 Sum_probs=2.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecceee
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMI 79 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i 79 (134)
|.|+| ..+|....+.|.+++++..|++..+++.|++++.++++|+|+++.++.|..++++.+|++|++.....||..+
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG~~~ 99 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGLTL 99 (227)
T ss_dssp ---------------------------------------------------------------------------CCCH
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCCchH
Confidence 46777 6688889999999999999999999999999999999999999999999999999999999999999888543
No 176
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=3.3e-09 Score=66.69 Aligned_cols=51 Identities=24% Similarity=0.273 Sum_probs=45.1
Q ss_pred eeeee-ecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 78 MIKVK-TLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 78 ~i~v~-~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
.+.|+ ..+++.+++.+.++.||.+||+.++...++|+++|+|+|+|++|-+
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD 68 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKN 68 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECS
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCC
Confidence 34454 4567899999999999999999999999999999999999999854
No 177
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.90 E-value=1.7e-09 Score=80.72 Aligned_cols=54 Identities=28% Similarity=0.468 Sum_probs=49.9
Q ss_pred cceeeeeeecCCcEEEEEeccCCcHHHHHHHhhh---hcCCCCCcceEEeCCeEEEE
Q 032747 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEE---KEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~---~~gip~~~q~L~~~g~~l~~ 128 (134)
..+.|+|++.+|+++.++|.+++||.+||.+|+. .+|||+++|+|+|.|++|.+
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D 62 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSD 62 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECS
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCC
Confidence 3478999999999999999999999999999999 67899999999999999964
No 178
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.88 E-value=1.6e-08 Score=61.85 Aligned_cols=70 Identities=13% Similarity=0.295 Sum_probs=64.5
Q ss_pred CEEEEEeCCCC-EEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEE
Q 032747 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (134)
Q Consensus 1 m~i~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 70 (134)
+.|.|+..+|. .+.+.+.+++++..|....+++.|++++..+++|+|..|.++.|..++++.+|++|.+.
T Consensus 26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 35778888884 78999999999999999999999999999999999999999999999999999999874
No 179
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=98.84 E-value=4.6e-09 Score=63.02 Aligned_cols=40 Identities=25% Similarity=0.183 Sum_probs=36.2
Q ss_pred ecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeC
Q 032747 83 TLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQ 122 (134)
Q Consensus 83 ~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~ 122 (134)
....+.++.++++++||++||++|+..+|||+++|+|+|.
T Consensus 11 ~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~ 50 (86)
T 4b6w_A 11 ASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLI 50 (86)
T ss_dssp TCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEE
T ss_pred CCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEe
Confidence 3456778999999999999999999999999999999974
No 180
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.83 E-value=6.7e-09 Score=63.40 Aligned_cols=46 Identities=17% Similarity=0.132 Sum_probs=38.6
Q ss_pred eeeeeecCC-cEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCC
Q 032747 78 MIKVKTLTG-KEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQS 123 (134)
Q Consensus 78 ~i~v~~~~~-~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g 123 (134)
.+.|+.... ..++++|.+++||++||++|+..+|+|+++|+|+|.|
T Consensus 9 ~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~ 55 (95)
T 1v6e_A 9 MVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYG 55 (95)
T ss_dssp EEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEEC
T ss_pred EEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeC
Confidence 344444333 3689999999999999999999999999999999986
No 181
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.82 E-value=4.6e-09 Score=65.50 Aligned_cols=47 Identities=23% Similarity=0.446 Sum_probs=43.1
Q ss_pred eeeeeeecCCcEEEEEec-cCCcHHHHHHHhhhhcCCCCCcceEEeCCe
Q 032747 77 TMIKVKTLTGKEIEIDIE-PTDTIERIKERVEEKEGIPPVQQRYPIQSF 124 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~-~~~tV~~lK~~i~~~~gip~~~q~L~~~g~ 124 (134)
|.|.|++.+|+. .++|+ +++||++||++|++.+|+|+++|+|+|.++
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~ 55 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRN 55 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGG
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCc
Confidence 668889999866 78999 999999999999999999999999998887
No 182
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.81 E-value=1e-08 Score=62.14 Aligned_cols=45 Identities=18% Similarity=0.042 Sum_probs=41.0
Q ss_pred eecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEE
Q 032747 82 KTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFIL 126 (134)
Q Consensus 82 ~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l 126 (134)
....++.+++.+.+.+|+..+|++|++++|||+.+|+|+|+|+.+
T Consensus 19 ~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l 63 (94)
T 4efo_A 19 SLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRL 63 (94)
T ss_dssp ETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEE
T ss_pred EcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCcc
Confidence 345578999999999999999999999999999999999999765
No 183
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=98.76 E-value=1.6e-08 Score=64.44 Aligned_cols=47 Identities=13% Similarity=0.115 Sum_probs=39.4
Q ss_pred eeeeeeecCC-cEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCC
Q 032747 77 TMIKVKTLTG-KEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQS 123 (134)
Q Consensus 77 ~~i~v~~~~~-~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g 123 (134)
+.+.|+...+ ..+++++.+++||++||.+|+..+|||+.+|+|+|.|
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g 54 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFD 54 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEEC
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEec
Confidence 3445554433 3688999999999999999999999999999999977
No 184
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.69 E-value=3.8e-08 Score=59.94 Aligned_cols=52 Identities=15% Similarity=0.255 Sum_probs=48.6
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
+.+.|++.+|+.+.++|.+++++..|+..++++.|+|+.+++|+|.|+.|..
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~ 59 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINE 59 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCT
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCC
Confidence 6678888999999999999999999999999999999999999999998854
No 185
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.67 E-value=2.9e-08 Score=59.43 Aligned_cols=49 Identities=16% Similarity=0.332 Sum_probs=42.1
Q ss_pred eeeeeeecCCcEEEEE-eccCCcHHHHHHHhhhhcCCCCCcceEEeC--CeEE
Q 032747 77 TMIKVKTLTGKEIEID-IEPTDTIERIKERVEEKEGIPPVQQRYPIQ--SFIL 126 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~-V~~~~tV~~lK~~i~~~~gip~~~q~L~~~--g~~l 126 (134)
|.+.|++.+|+.. +. +++++||++||.+|++.+|+|+++|+|+|+ |+.+
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l 52 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECL 52 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCC
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCccc
Confidence 4578899998654 77 999999999999999999999999999986 3554
No 186
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.67 E-value=7.9e-08 Score=55.64 Aligned_cols=52 Identities=15% Similarity=0.255 Sum_probs=48.1
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
+.+.|++.+|+.+.+.|.+++++..|+...+++.|+|+.+++|+|.|+.|..
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~ 53 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINE 53 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCT
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCC
Confidence 4577888899999999999999999999999999999999999999998753
No 187
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.66 E-value=2.4e-07 Score=64.18 Aligned_cols=75 Identities=13% Similarity=0.335 Sum_probs=68.7
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecce
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 77 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 77 (134)
.|+|+. +|....+.+..++++..|++..+++.|++++.++++|+|+.+.++.+..++.+.++++|++.....+|.
T Consensus 23 ~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg~ 97 (209)
T 3uf8_A 23 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGS 97 (209)
T ss_dssp EEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTCC
T ss_pred EEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccccccc
Confidence 466766 678889999999999999999999999999999999999999999999999999999999988877654
No 188
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.66 E-value=1.8e-08 Score=74.03 Aligned_cols=51 Identities=24% Similarity=0.345 Sum_probs=45.4
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEE---eCCeEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYP---IQSFILFY 128 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~---~~g~~l~~ 128 (134)
+.+.|+. +|+.++++|++++||++||++|++.+|+|+++|+|+ |.|++|.+
T Consensus 6 i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D 59 (320)
T 3shq_A 6 VVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAAD 59 (320)
T ss_dssp EEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCT
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCc
Confidence 4566774 688999999999999999999999999999999999 89987754
No 189
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.64 E-value=2e-07 Score=56.31 Aligned_cols=70 Identities=14% Similarity=0.291 Sum_probs=64.9
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEE
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
.|.|+. +|....+.+..++....|.+..+++.|++++..+++|.|..+.++.|..++++.++++|.+++.
T Consensus 23 niKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 23 PLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp EEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred EEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence 577774 6889999999999999999999999999999999999999999999999999999999998764
No 190
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.59 E-value=5.9e-09 Score=77.26 Aligned_cols=76 Identities=13% Similarity=0.314 Sum_probs=1.0
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeeccee
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTM 78 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~ 78 (134)
.|.|+. +|+...+.|.+++++..|++..+++.|++++.++++|+|+.+.++.|.+++++++|++|++.....||+.
T Consensus 23 ~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~~~ 98 (360)
T 3ix6_A 23 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGMR 98 (360)
T ss_dssp ---------------------------------------------------------------------------CH
T ss_pred EEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCchHH
Confidence 466766 5778889999999999999999999999999999999999999999999999999999999999988863
No 191
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.57 E-value=1.8e-07 Score=56.58 Aligned_cols=52 Identities=15% Similarity=0.255 Sum_probs=48.4
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
+.+.|++.+|+.+.++|.+++++..|+...+++.|+|+.+++|+|.|+.|..
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~ 57 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINE 57 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCT
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCC
Confidence 5678888899999999999999999999999999999999999999998854
No 192
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.54 E-value=3.6e-07 Score=53.79 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=47.7
Q ss_pred eeeeeeecCCc-EEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 77 TMIKVKTLTGK-EIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 77 ~~i~v~~~~~~-~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
+.+.|++.+|+ .+.+.|.+++++..|+...+++.|+++.+++|+|.|+.|..
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~ 60 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSG 60 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCS
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCC
Confidence 56778888996 89999999999999999999999999999999999998854
No 193
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.52 E-value=6.5e-07 Score=54.22 Aligned_cols=53 Identities=21% Similarity=0.309 Sum_probs=44.5
Q ss_pred CCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEc--CCCCCcccccc
Q 032747 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLADYNI 61 (134)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L--~d~~~L~~~~i 61 (134)
.+..+.+.+.+++|+..+|++|++.+|+|++.|+|+|.|+.+ +.......|.-
T Consensus 22 ~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~ 76 (94)
T 4efo_A 22 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 76 (94)
T ss_dssp TTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCC
T ss_pred cceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCC
Confidence 456788999999999999999999999999999999999765 44555556543
No 194
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=98.51 E-value=4.5e-06 Score=62.26 Aligned_cols=109 Identities=19% Similarity=0.301 Sum_probs=89.5
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhC----CCCCceEEEE------cCEEcCCCCCccccccccccceEEEE
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g----i~~~~q~L~~------~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (134)
.+.|... +..-++.+++++||.+....|.++.. .++++--|+. .|.-|++.++|..|++.+++.+...-
T Consensus 5 ~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~ 83 (371)
T 3ivf_A 5 SLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK 83 (371)
T ss_dssp EEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC
Confidence 3455554 56678999999999999999988764 2466777777 25668888999999999999887755
Q ss_pred EeecceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCC
Q 032747 72 RLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPP 114 (134)
Q Consensus 72 ~~~~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~ 114 (134)
+. +.+.|..++|....+.|+++.|+.++-.+|++.-|+.-
T Consensus 84 ~~---~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e 123 (371)
T 3ivf_A 84 KQ---RPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITN 123 (371)
T ss_dssp CE---EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSC
T ss_pred ce---eEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCC
Confidence 43 57788899999999999999999999999999999754
No 195
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.44 E-value=5.7e-07 Score=54.58 Aligned_cols=52 Identities=15% Similarity=0.255 Sum_probs=47.8
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
+.+.|++.+|+.+.+.|.+++++..|+..++++.|+|+.+++|+|.|+.|..
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~ 69 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINE 69 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCT
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCC
Confidence 5667788889999999999999999999999999999999999999998864
No 196
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=98.42 E-value=1.3e-06 Score=52.29 Aligned_cols=72 Identities=18% Similarity=0.198 Sum_probs=66.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEE
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
|.|.|-..+++...+.|.|++++.++-++-.+++|+.+++-.|.|++++|+-...+.-.|+.+|+.+.+...
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence 578898999999999999999999999999999999999999999999999888999999999999998654
No 197
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.41 E-value=5.5e-07 Score=56.28 Aligned_cols=52 Identities=17% Similarity=0.263 Sum_probs=48.0
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
+.+.|++.+|+.+.+.|.+++++..|+..++++.|+|+.+++|+|.|+.|..
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~ 78 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDE 78 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCS
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCC
Confidence 5677888899999999999999999999999999999999999999998754
No 198
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.38 E-value=6.8e-07 Score=55.34 Aligned_cols=52 Identities=15% Similarity=0.255 Sum_probs=47.5
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
+.|.|++.+|+.+.+.|.+++++..|+..++++.|+|+.+++|+|.|+.|..
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~ 76 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINE 76 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCT
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCC
Confidence 5567788889999999999999999999999999999999999999998753
No 199
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=98.33 E-value=6.2e-08 Score=72.87 Aligned_cols=79 Identities=11% Similarity=0.297 Sum_probs=0.0
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecceeeee
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKV 81 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~v 81 (134)
.|+|+. +|....+.+.+++++..|++..+++.|+++..++++|+|+++.++.|..++++.+|++|++.....+|.....
T Consensus 32 ~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~n~~~ 110 (389)
T 4da1_A 32 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGENLYF 110 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccccccce
Confidence 455655 5677789999999999999999999999999999999999999999999999999999999999887765544
No 200
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.30 E-value=1.5e-06 Score=53.93 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=47.0
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
+.+.|++ +|+.+.++|.+++++..|+..++++.|+++.+++|+|.|+.|..
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~ 82 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQA 82 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCT
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCC
Confidence 5677788 89999999999999999999999999999999999999998753
No 201
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=98.28 E-value=1.4e-06 Score=55.67 Aligned_cols=71 Identities=27% Similarity=0.393 Sum_probs=58.1
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCC-------------------------------------ceEEE
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-------------------------------------QQRLI 44 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~-------------------------------------~q~L~ 44 (134)
.+.|+.++|...++.|+.+.+|++++..|.++.|++.. .++|-
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 37899999999999999999999999999999999854 23332
Q ss_pred E--cCEEcCCCCCccccccccccceEEEEE
Q 032747 45 F--AGKQLEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 45 ~--~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
. .+..|++..+|.++||.+++++.+.-+
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 1 125678899999999999999876543
No 202
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.26 E-value=2.5e-06 Score=51.95 Aligned_cols=39 Identities=10% Similarity=0.152 Sum_probs=36.7
Q ss_pred cCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeC
Q 032747 84 LTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQ 122 (134)
Q Consensus 84 ~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~ 122 (134)
.+++.++.++.++.||++||.+|+..+|+|+..|+|.|.
T Consensus 20 ~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~ 58 (97)
T 1wjn_A 20 PERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYE 58 (97)
T ss_dssp SSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEE
Confidence 467889999999999999999999999999999999987
No 203
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=98.09 E-value=3.7e-05 Score=45.49 Aligned_cols=69 Identities=17% Similarity=0.326 Sum_probs=57.7
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEc--CEEc---CCCCCccccccccccceEEEE
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQL---EDGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~--g~~L---~d~~~L~~~~i~~~~~i~l~~ 71 (134)
+|.||.++|+.+.-.+..++|+.+|.+-|.. .+.++....|... .+.+ +.+.+|.++|+.+++++.+.-
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 6889999999998899999999999999988 5667777888743 5777 346899999999999988753
No 204
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=97.88 E-value=4.2e-05 Score=47.94 Aligned_cols=52 Identities=19% Similarity=0.318 Sum_probs=47.2
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
+.+.|+..+|..+.+.|.++++...|+...+++.|+++.+++|+|.|+.|..
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~ 92 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIAD 92 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCT
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCC
Confidence 4567778888899999999999999999999999999999999999998753
No 205
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.86 E-value=5.9e-05 Score=44.36 Aligned_cols=68 Identities=15% Similarity=0.224 Sum_probs=54.8
Q ss_pred EEEEEe--CCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCC-----ceEEEEcCEEcCCCCCccccccccccceEE
Q 032747 2 QIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-----QQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (134)
Q Consensus 2 ~i~v~~--~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~-----~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l 69 (134)
.|++.. -.++.+.++++...|+..|++.+.+.++++.. ..++.-.+..|.+...|++|++.+|+.+.+
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 345543 36899999999999999999999999887652 223444578899999999999999999875
No 206
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.77 E-value=0.00022 Score=44.23 Aligned_cols=70 Identities=14% Similarity=0.197 Sum_probs=58.4
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEE--cCEEcC---CCCCccccccccccceEEEE
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE---DGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~--~g~~L~---d~~~L~~~~i~~~~~i~l~~ 71 (134)
+|.||.++|..+.-.+..++|+.+|.+-|....+.+.....|.. -.+.+. .+.+|.+.|+.+.+++.+..
T Consensus 15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 68899999999999999999999999999998877766777774 356665 36799999999988887654
No 207
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.71 E-value=0.00027 Score=44.88 Aligned_cols=69 Identities=17% Similarity=0.273 Sum_probs=57.7
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEE--cCEEc--C-CCCCccccccccccceEEEE
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQL--E-DGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~--~g~~L--~-d~~~L~~~~i~~~~~i~l~~ 71 (134)
+|.||.++|..+.-.+..++||.+|..-|... +.++....|.. -.+.| . .+.+|.+.|+.+.++|.+.-
T Consensus 45 ~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 45 QLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp EEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 68899999999999999999999999999887 67767777774 46777 3 46899999999888887653
No 208
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.46 E-value=0.00031 Score=41.92 Aligned_cols=53 Identities=17% Similarity=0.365 Sum_probs=47.9
Q ss_pred cceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEE
Q 032747 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILF 127 (134)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~ 127 (134)
+|+.+.|-..+++..++.|.|+.+..++-+.-+++.|+.+++..|.|+++.|+
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lD 60 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLD 60 (90)
T ss_dssp --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEES
T ss_pred CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEecc
Confidence 46778888889999999999999999999999999999999999999999885
No 209
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.0003 Score=48.17 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=44.9
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
+.+.|+ .+|..+.++|.++++...|+...+++.|+|+.+++++|.|+.|..
T Consensus 30 I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~ 80 (200)
T 3pge_A 30 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQA 80 (200)
T ss_dssp EEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCT
T ss_pred EEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCC
Confidence 344554 478899999999999999999999999999999999999998753
No 210
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.32 E-value=0.00022 Score=41.81 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=37.3
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeC
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQ 122 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~ 122 (134)
+.+-+++.+| .+.+++++++|+.+|+.+|++..+++++.|.+.++
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~ 49 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYIN 49 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCS
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEec
Confidence 4455677776 67788999999999999999999999888777654
No 211
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.20 E-value=0.0017 Score=40.20 Aligned_cols=70 Identities=17% Similarity=0.209 Sum_probs=56.4
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEE--cCEEcC--CCCCccccccccccceEEEEE
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE--DGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~--~g~~L~--d~~~L~~~~i~~~~~i~l~~~ 72 (134)
+|.||..+|+.+.-.+..++||.+|..-|... +..+....|.. -.+.+. .+.+|.+.|+.+.+++.+...
T Consensus 25 ~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~ 98 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK 98 (109)
T ss_dssp EEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeC
Confidence 68899999999988999999999999999965 44555677764 366675 468999999999888876543
No 212
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.00096 Score=45.35 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=45.2
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
+.+.|+ .+|..+.++|.++++...|+...+++.|+++.+++++|.|+.|..
T Consensus 58 InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ 108 (207)
T 3tix_A 58 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQA 108 (207)
T ss_dssp EEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCS
T ss_pred EEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCC
Confidence 445554 478899999999999999999999999999999999999998764
No 213
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=97.10 E-value=0.015 Score=45.40 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=70.8
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCC---CceEEE--EcCE---EcCCCCCccccccccccceEEEEEeec--------
Q 032747 12 TITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLI--FAGK---QLEDGRTLADYNIQKESTLHLVLRLRG-------- 75 (134)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~---~~q~L~--~~g~---~L~d~~~L~~~~i~~~~~i~l~~~~~~-------- 75 (134)
.+.+-++.+.||+||-+.+.++.+++. ...+++ ++++ .++++.+|++..-.....+.+..-+..
T Consensus 353 ~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~ 432 (530)
T 2ylm_A 353 EITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKEN 432 (530)
T ss_dssp EEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEEEECCGGGSSCCTTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEEEECCHHHhccCCCC
Confidence 456778889999999999999998873 556665 6664 467777777654211333333222211
Q ss_pred ceeeeeee-------cCCcEEEEEeccCCcHHHHHHHhhhhcCCCCC
Q 032747 76 GTMIKVKT-------LTGKEIEIDIEPTDTIERIKERVEEKEGIPPV 115 (134)
Q Consensus 76 ~~~i~v~~-------~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~ 115 (134)
..-+.|-. ..|.-|.+.|.+.+|..++|++|+++.|++-.
T Consensus 433 ~~li~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~k 479 (530)
T 2ylm_A 433 EMLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEK 479 (530)
T ss_dssp EEEEEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCCHH
T ss_pred cEEEEEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCCHh
Confidence 11122211 23788999999999999999999999998744
No 214
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=97.05 E-value=0.0019 Score=41.10 Aligned_cols=66 Identities=20% Similarity=0.324 Sum_probs=52.8
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhh-CCCCCceEEEE--cCEEcCC-CCCccccccccccce
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLIF--AGKQLED-GRTLADYNIQKESTL 67 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~-gi~~~~q~L~~--~g~~L~d-~~~L~~~~i~~~~~i 67 (134)
+|.||..+|..+.-.+..++||.+|.+-|.... +.......|.. -.+.+.| +.+|.+.|+.+.+.+
T Consensus 54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 588999999999999999999999999999864 34455667764 3677864 589999999875443
No 215
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=96.77 E-value=0.003 Score=43.51 Aligned_cols=51 Identities=20% Similarity=0.259 Sum_probs=44.3
Q ss_pred ceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEE
Q 032747 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILF 127 (134)
Q Consensus 76 ~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~ 127 (134)
.+.+.|.. ++..+.++|.++++...|+...+++.|+|+.+++++|.|+.+.
T Consensus 21 ~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~ 71 (209)
T 3uf8_A 21 HINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ 71 (209)
T ss_dssp EEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECC
T ss_pred cEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEecc
Confidence 34555555 6778889999999999999999999999999999999999864
No 216
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=96.75 E-value=0.0037 Score=36.23 Aligned_cols=51 Identities=12% Similarity=0.072 Sum_probs=44.4
Q ss_pred eeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCC-cceEEeCCeEEEEEe
Q 032747 80 KVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPV-QQRYPIQSFILFYFS 130 (134)
Q Consensus 80 ~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~-~q~L~~~g~~l~~~~ 130 (134)
..+......+.+.|.++.+|..|-...+.+.|||+. ..+|.|.|..|+.+.
T Consensus 13 ~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~ 64 (82)
T 3goe_A 13 LLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPND 64 (82)
T ss_dssp EEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTS
T ss_pred hhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccC
Confidence 445555567899999999999999999999999999 999999999987654
No 217
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=96.70 E-value=0.00026 Score=48.75 Aligned_cols=52 Identities=19% Similarity=0.203 Sum_probs=0.0
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
+.+.| ..+|..+.++|.++++...|+...+++.|+++.+++++|.|+.+..+
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dd 73 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQAD 73 (227)
T ss_dssp -----------------------------------------------------
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCC
Confidence 45666 66788999999999999999999999999999999999999988753
No 218
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.50 E-value=0.0049 Score=36.19 Aligned_cols=62 Identities=13% Similarity=0.232 Sum_probs=54.6
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEc---CEEcCCCCCcccccccc
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQLEDGRTLADYNIQK 63 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~---g~~L~d~~~L~~~~i~~ 63 (134)
++.|.-...+...+.|+|..++.+|--.|.++-.+.++.-.|.-. +.+|+-+++|.+||+.+
T Consensus 12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 677777777888899999999999999999999999988888744 57899999999999976
No 219
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=96.47 E-value=0.034 Score=31.32 Aligned_cols=62 Identities=19% Similarity=0.211 Sum_probs=44.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEE
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
|+|+|.... ....++++...|+.+|.+.+ ++++....+..+|..+..+. -+++|+.|.+.-.
T Consensus 5 m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 5 MKFTVITDD-GKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRV 66 (70)
T ss_dssp EEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEEC
T ss_pred EEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEec
Confidence 566665543 23457788889999999876 45666667779999887554 5678898887543
No 220
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=96.43 E-value=0.0099 Score=41.08 Aligned_cols=64 Identities=23% Similarity=0.360 Sum_probs=51.7
Q ss_pred EEEEEcCCCcHHHHHHHHHhhhCCCCC-ceEEEE-c--C--EEcCC-CCCccccccccccceEEEEEeecc
Q 032747 13 ITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-A--G--KQLED-GRTLADYNIQKESTLHLVLRLRGG 76 (134)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gi~~~-~q~L~~-~--g--~~L~d-~~~L~~~~i~~~~~i~l~~~~~~~ 76 (134)
+.+.++..+|+.+|++.+.+.++++++ ..||.. . + ..|.| +.+|.++++.++..|.+-++..+|
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg 212 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG 212 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred eEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 557789999999999999999999986 678873 2 2 45665 579999999999999888875544
No 221
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=96.40 E-value=0.019 Score=40.08 Aligned_cols=64 Identities=20% Similarity=0.310 Sum_probs=52.4
Q ss_pred EEEEEcCCCcHHHHHHHHHhhhCCCCC-ceEEEE-c----CEEcCC-CCCccccccccccceEEEEEeecc
Q 032747 13 ITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-A----GKQLED-GRTLADYNIQKESTLHLVLRLRGG 76 (134)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gi~~~-~q~L~~-~----g~~L~d-~~~L~~~~i~~~~~i~l~~~~~~~ 76 (134)
+.+.++..+|+.+|++.+.+.++++++ ..||.. + ...|.| +.+|.++++.++..|.+-++..+|
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg 224 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG 224 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 456778999999999999999999997 688884 3 245665 589999999999999888775544
No 222
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=96.39 E-value=0.02 Score=34.65 Aligned_cols=52 Identities=12% Similarity=0.188 Sum_probs=44.6
Q ss_pred eeeeeeecCCc-EEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEE
Q 032747 77 TMIKVKTLTGK-EIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFY 128 (134)
Q Consensus 77 ~~i~v~~~~~~-~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~ 128 (134)
+.+.|+..++. .+.+.|.++++...|....+++.|+++...+++|.|..|..
T Consensus 26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~ 78 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSG 78 (97)
T ss_dssp EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCS
T ss_pred EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCC
Confidence 34556666774 78899999999999999999999999999999999998753
No 223
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=96.30 E-value=0.024 Score=32.48 Aligned_cols=60 Identities=12% Similarity=0.324 Sum_probs=45.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEE
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 70 (134)
|+|+|+..+.....++++++.|+.+|-+ ..|+|++.--...||+.+..+.. .+|+.+.+.
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~~------l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQS------VEVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTSS------SCCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHHC------CCCCEEEEE
Confidence 8999998755556689999999998764 67888888877789998865552 247777763
No 224
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=96.07 E-value=0.052 Score=33.53 Aligned_cols=62 Identities=37% Similarity=0.449 Sum_probs=43.3
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhhh--CCCC------CceEEEEc----CEEcCCC-------------CCccccccccc
Q 032747 10 GKTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIFA----GKQLEDG-------------RTLADYNIQKE 64 (134)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~--gi~~------~~q~L~~~----g~~L~d~-------------~~L~~~~i~~~ 64 (134)
+..+++.|-.-+||.++|++|-... |.|. ++..|-+. |+.|.|. +||+.|++.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4557888889999999999997753 3442 45556653 4556542 46889999999
Q ss_pred cceEEEE
Q 032747 65 STLHLVL 71 (134)
Q Consensus 65 ~~i~l~~ 71 (134)
+++.+..
T Consensus 103 atl~l~~ 109 (111)
T 4e71_A 103 ATLILSK 109 (111)
T ss_dssp CEEEEEE
T ss_pred CEEEEEe
Confidence 9997753
No 225
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=96.06 E-value=0.013 Score=37.25 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=35.7
Q ss_pred eeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCC
Q 032747 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPV 115 (134)
Q Consensus 78 ~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~ 115 (134)
++.|+.++|+..++.|+.+.||.+++..||.+.||+..
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~ 50 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNH 50 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCc
Confidence 67899999999999999999999999999999999855
No 226
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=95.80 E-value=0.03 Score=32.81 Aligned_cols=44 Identities=11% Similarity=0.193 Sum_probs=38.4
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcC
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g 47 (134)
.|+|... -++.+.|+++.+..+|.++|.++.+++++...|.|..
T Consensus 7 ~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 7 TLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp EEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred EEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 4566554 5889999999999999999999999999999999874
No 227
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=95.78 E-value=0.054 Score=42.26 Aligned_cols=109 Identities=15% Similarity=0.236 Sum_probs=72.5
Q ss_pred EEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEc-----C--EE-cC-----CCCCccccccccccceEEEEEe--ec--
Q 032747 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-----G--KQ-LE-----DGRTLADYNIQKESTLHLVLRL--RG-- 75 (134)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~-----g--~~-L~-----d~~~L~~~~i~~~~~i~l~~~~--~~-- 75 (134)
..+.|..++|+.+||+.+++.+|+|+++|||+.- + ++ +. .+.++.++. ..++.+.+.+.. ++
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~-~~~~~~~lflE~~~~~~~ 116 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELS-DNENPWTIFLETVDPELA 116 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHH-TSCSSEEEEEEECCHHHH
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHh-ccCCceEEEEEecccccC
Confidence 3678999999999999999999999999999843 1 11 11 112333321 123334333322 10
Q ss_pred -------------ceeeeeeecC--CcEEE----EEeccCCcHHHHHHHhhhhcCCCCCcceEEeC
Q 032747 76 -------------GTMIKVKTLT--GKEIE----IDIEPTDTIERIKERVEEKEGIPPVQQRYPIQ 122 (134)
Q Consensus 76 -------------~~~i~v~~~~--~~~~~----~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~ 122 (134)
.+-+++|.-+ .+++. +.|..+++|.+|-..|.++-|+|++.-..+|+
T Consensus 117 ~~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyE 182 (530)
T 2ylm_A 117 ASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYE 182 (530)
T ss_dssp TTTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEE
T ss_pred CccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEE
Confidence 1344555432 33333 56889999999999999999999998766664
No 228
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=95.65 E-value=0.012 Score=37.49 Aligned_cols=32 Identities=13% Similarity=0.206 Sum_probs=29.9
Q ss_pred EEEEeccCCcHHHHHHHhhhhcCCCCCcceEE
Q 032747 89 IEIDIEPTDTIERIKERVEEKEGIPPVQQRYP 120 (134)
Q Consensus 89 ~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~ 120 (134)
.+++|..+.|+.+|+.+|++..|+|+++|||+
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW 89 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 89 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEE
Confidence 45799999999999999999999999999997
No 229
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=95.54 E-value=0.066 Score=30.33 Aligned_cols=70 Identities=14% Similarity=0.305 Sum_probs=45.7
Q ss_pred CEEEEEeCCC-CEEEEEEcCCCcHHHHHHHHHhhhCCCC--CceEEEEcCEEcCCCCCccccccccccceEEEEEeec
Q 032747 1 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (134)
Q Consensus 1 m~i~v~~~~g-~~~~~~v~~~~tv~~lK~~i~~~~gi~~--~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 75 (134)
|+++|+.... +.-.+++ ...|+.+|.+.+....++.. ....+..||+...+ .+..+++|+.|.+.....|
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsG 73 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCG 73 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCC
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCC
Confidence 7788877653 2134666 67899999999987533322 34567778877543 2445778999887644333
No 230
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=95.13 E-value=0.15 Score=32.64 Aligned_cols=63 Identities=30% Similarity=0.472 Sum_probs=45.5
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhhh--CCCC------CceEEEEc----CE-EcCCC-------------CCccccccccc
Q 032747 11 KTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIFA----GK-QLEDG-------------RTLADYNIQKE 64 (134)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~--gi~~------~~q~L~~~----g~-~L~d~-------------~~L~~~~i~~~ 64 (134)
+.+++.|-.-+||.++|++|-... |.|. ++.-|-+. |+ .|.|. +||+.|++.+|
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 458889999999999999998764 4443 34455442 33 35543 37999999999
Q ss_pred cceEEEEEe
Q 032747 65 STLHLVLRL 73 (134)
Q Consensus 65 ~~i~l~~~~ 73 (134)
+++.+..+.
T Consensus 121 a~l~l~~~~ 129 (138)
T 2r2o_A 121 ATVALVPCL 129 (138)
T ss_dssp CEEEEEEC-
T ss_pred CEEEEEECC
Confidence 999886654
No 231
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=95.04 E-value=0.12 Score=30.25 Aligned_cols=59 Identities=19% Similarity=0.378 Sum_probs=49.9
Q ss_pred EEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEE
Q 032747 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (134)
+.-.++-..++..||..++.+.|++-+.-.+...+..|+++++|.+.+++-...+.+.+
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinv 63 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSV 63 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEE
Confidence 34456778899999999999999999999999999889999999999997666666543
No 232
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=95.03 E-value=0.035 Score=35.35 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=30.9
Q ss_pred EEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEc
Q 032747 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (134)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 46 (134)
..+.|..++|+.+|+..|++.+|+|+++|||..-
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 4578889999999999999999999999999854
No 233
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=94.89 E-value=0.094 Score=30.69 Aligned_cols=45 Identities=9% Similarity=0.155 Sum_probs=38.2
Q ss_pred eeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCC
Q 032747 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQS 123 (134)
Q Consensus 79 i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g 123 (134)
+.|+....-++.++|.+.-+..+|+.+|.++.++|++.-.|.|..
T Consensus 6 ~~VKV~~~~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 6 YTLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp EEEEEESSSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred EEEEEEEEEEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 444544445899999999999999999999999999999998875
No 234
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=94.86 E-value=0.24 Score=29.53 Aligned_cols=66 Identities=11% Similarity=0.250 Sum_probs=45.0
Q ss_pred CEEEEEeCC------C-CEEEEEEcCCCcHHHHHHHHHhhhC-C----------CCCceEEEEcCEEcCCCCCccccccc
Q 032747 1 MQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADYNIQ 62 (134)
Q Consensus 1 m~i~v~~~~------g-~~~~~~v~~~~tv~~lK~~i~~~~g-i----------~~~~q~L~~~g~~L~d~~~L~~~~i~ 62 (134)
|+|+|+... | ....+++....||.+|.+.+..... + ......+..||+.... +.-++
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~ 84 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK 84 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCC
Confidence 456666543 3 4567888888999999999987631 0 1234567788887653 55678
Q ss_pred cccceEEEE
Q 032747 63 KESTLHLVL 71 (134)
Q Consensus 63 ~~~~i~l~~ 71 (134)
+|+.|.+..
T Consensus 85 dGDeV~i~p 93 (98)
T 1vjk_A 85 DGDVVGVFP 93 (98)
T ss_dssp TTCEEEEES
T ss_pred CCCEEEEEC
Confidence 899987753
No 235
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=94.52 E-value=0.0064 Score=45.14 Aligned_cols=52 Identities=19% Similarity=0.220 Sum_probs=0.0
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
+.+.|+. +|..+.++|.++++...|+...+++.|+++.++++.|.|+.+..+
T Consensus 22 I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~ 73 (360)
T 3ix6_A 22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQAD 73 (360)
T ss_dssp -----------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCC
Confidence 4555655 567888999999999999999999999999999999999988653
No 236
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=94.17 E-value=0.19 Score=29.57 Aligned_cols=57 Identities=11% Similarity=0.130 Sum_probs=39.2
Q ss_pred CCCEEEEEEcCC-CcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEE
Q 032747 9 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 9 ~g~~~~~~v~~~-~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
+|+. ++++.. .|+.+|.+.+ ++++....+..||+.+..+ ...+.-+++|+.|.+...
T Consensus 26 NGe~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~ 83 (87)
T 1tyg_B 26 NGKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHF 83 (87)
T ss_dssp TTEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEE
T ss_pred CCEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcc
Confidence 4443 345666 8999998876 4666677788999988533 233456788999987644
No 237
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=93.58 E-value=0.81 Score=28.81 Aligned_cols=64 Identities=27% Similarity=0.391 Sum_probs=45.9
Q ss_pred CCCEEEEEEcCCCcHHHHHHHHHhhh--CCC------CCceEEEEc----CEE-cCCC-------------CCccccccc
Q 032747 9 TGKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA----GKQ-LEDG-------------RTLADYNIQ 62 (134)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~--gi~------~~~q~L~~~----g~~-L~d~-------------~~L~~~~i~ 62 (134)
++..+++.|-.-+||.++|++|-... +.| +++..|-+. |+. |.|. +||+.|++.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 34568888889999999999997753 344 345666652 332 5431 478999999
Q ss_pred cccceEEEEE
Q 032747 63 KESTLHLVLR 72 (134)
Q Consensus 63 ~~~~i~l~~~ 72 (134)
+|+++.+..+
T Consensus 95 dgatv~l~~~ 104 (127)
T 3h6n_A 95 EGASLAMSLI 104 (127)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999988654
No 238
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=93.54 E-value=0.42 Score=29.72 Aligned_cols=62 Identities=31% Similarity=0.473 Sum_probs=43.4
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhhh--CCCC------CceEEEEc----CE-EcCC---------C----CCccccccccc
Q 032747 11 KTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIFA----GK-QLED---------G----RTLADYNIQKE 64 (134)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~--gi~~------~~q~L~~~----g~-~L~d---------~----~~L~~~~i~~~ 64 (134)
..+++.|-.-+||.++|++|-... |.|. ++..|-+. |+ .|.| . +||+.|++.+|
T Consensus 27 ~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 106 (117)
T 4e74_A 27 PEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDG 106 (117)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTT
T ss_pred CceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCC
Confidence 447788889999999999997753 4443 44555542 23 2443 1 46889999999
Q ss_pred cceEEEEE
Q 032747 65 STLHLVLR 72 (134)
Q Consensus 65 ~~i~l~~~ 72 (134)
+++.+..+
T Consensus 107 atl~l~~~ 114 (117)
T 4e74_A 107 SVVALVSK 114 (117)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEeC
Confidence 99988654
No 239
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=93.45 E-value=0.3 Score=29.24 Aligned_cols=49 Identities=8% Similarity=0.228 Sum_probs=42.1
Q ss_pred eeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEE
Q 032747 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILF 127 (134)
Q Consensus 78 ~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~ 127 (134)
.+.|+ ..|....+.+..++....|....+++.|+++..-++.|.|..+.
T Consensus 23 niKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~ 71 (95)
T 2l76_A 23 PLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELS 71 (95)
T ss_dssp EEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECC
T ss_pred EEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCC
Confidence 34455 35778889999999999999999999999999999999998763
No 240
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=93.34 E-value=0.015 Score=43.53 Aligned_cols=51 Identities=20% Similarity=0.228 Sum_probs=0.0
Q ss_pred eeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEEEEE
Q 032747 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFILFYF 129 (134)
Q Consensus 78 ~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l~~~ 129 (134)
.+.|.. ++..+.++|.++++...|+...+++.|+++.++++.|.|+.+..+
T Consensus 32 ~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~ 82 (389)
T 4da1_A 32 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQAD 82 (389)
T ss_dssp ----------------------------------------------------
T ss_pred EEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCC
Confidence 344544 567888999999999999999999999999999999999988743
No 241
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=92.93 E-value=0.63 Score=27.27 Aligned_cols=73 Identities=15% Similarity=0.192 Sum_probs=44.4
Q ss_pred CEEEEEeCC------CCEEEEEEcCCCcHHHHHHHHHhhhCC------C-------CCceEEEEcCEEcCCCCCcccccc
Q 032747 1 MQIFVKTLT------GKTITLEVESSDTIDNVKAKIQDKEGI------P-------PDQQRLIFAGKQLEDGRTLADYNI 61 (134)
Q Consensus 1 m~i~v~~~~------g~~~~~~v~~~~tv~~lK~~i~~~~gi------~-------~~~q~L~~~g~~L~d~~~L~~~~i 61 (134)
|+|+|+... |....++. ...||.+|.+.+.....- . .....+..||+...+..-+ +.-+
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCC
Confidence 666776543 32224664 568999999999876520 0 1135677888877643222 3457
Q ss_pred ccccceEEEEEeec
Q 032747 62 QKESTLHLVLRLRG 75 (134)
Q Consensus 62 ~~~~~i~l~~~~~~ 75 (134)
++|+.|.+.....|
T Consensus 79 ~~gDeV~i~Ppv~G 92 (93)
T 3dwg_C 79 ADGDSVTILPAVAG 92 (93)
T ss_dssp CTTCEEEEEECCTT
T ss_pred CCCCEEEEECCCCC
Confidence 88999887654443
No 242
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=92.74 E-value=0.7 Score=26.79 Aligned_cols=59 Identities=12% Similarity=0.179 Sum_probs=41.3
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhhhC-C-----C-----CCceEEEEcCEEcCCCCCccccccccccceEEEEEee
Q 032747 11 KTITLEVESSDTIDNVKAKIQDKEG-I-----P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (134)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~g-i-----~-----~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (134)
....++++...||.+|.+.+..... + . .....+..||+.... +.-+++|+.|.+.....
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~ 87 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVS 87 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCC
Confidence 5667888888999999999987642 1 0 012577788888764 45577899988754433
No 243
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=92.71 E-value=0.66 Score=27.40 Aligned_cols=40 Identities=10% Similarity=0.194 Sum_probs=33.7
Q ss_pred CCCEEEEEEcCCCcHHHHHHHHHhhhCCCCC-ceEEEEcCE
Q 032747 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGK 48 (134)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~-~q~L~~~g~ 48 (134)
+|....+.++++.+..+|.+++...++++.. ...+.|...
T Consensus 14 ~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 14 RGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp SSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 5688889999999999999999999998754 467777654
No 244
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=92.11 E-value=1.8 Score=30.63 Aligned_cols=71 Identities=17% Similarity=0.286 Sum_probs=52.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCC-ceEEEE---cC--EEcCCCCCccccccccccceEEEEE
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF---AG--KQLEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~-~q~L~~---~g--~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
|.+.|..++| ++.+.+++.+|+.++-+.|.+..|+... ..-|.+ +| ..|+.+..+.+.++..+....+..+
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence 4678888998 6789999999999999999999998653 345554 23 2467778888776555555544444
No 245
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=91.92 E-value=1.6 Score=31.29 Aligned_cols=70 Identities=11% Similarity=0.119 Sum_probs=52.0
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCC-CceEEEE--cCE--EcCCCCCccccccccccceEEEEE
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF--AGK--QLEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~-~~q~L~~--~g~--~L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
.+.|..++| .+.+.+++.+|+.++-+.|.+..|+.. +..-|.+ +|. .|+.+..+.+.+...+....+..+
T Consensus 24 ~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 24 TVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp EEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred EEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 567888898 788999999999999999999999875 3345554 343 377788888876655555544443
No 246
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=91.75 E-value=0.3 Score=26.85 Aligned_cols=57 Identities=9% Similarity=0.136 Sum_probs=38.6
Q ss_pred CCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEE
Q 032747 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
+|+.+ ++....|+.+|.+.+ +.++....+..+|+.+... ...+.-+++|+.|.+.-.
T Consensus 6 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~ 62 (66)
T 1f0z_A 6 NDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQV 62 (66)
T ss_dssp SSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEES
T ss_pred CCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEee
Confidence 55654 456788999999877 4566677778899887532 122345678888887543
No 247
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=91.52 E-value=0.78 Score=26.42 Aligned_cols=42 Identities=14% Similarity=0.282 Sum_probs=35.6
Q ss_pred eeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEE
Q 032747 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYP 120 (134)
Q Consensus 78 ~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~ 120 (134)
.+.|+.++|+.+.-+...++|+.+|..-|.. .|.+...+.|+
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~ 50 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLL 50 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEE
Confidence 4567888898888899999999999999987 67777777777
No 248
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=91.27 E-value=0.26 Score=27.90 Aligned_cols=65 Identities=11% Similarity=0.216 Sum_probs=43.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecc
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (134)
|+|+| +|+.+. + ...|+.+|-+. .++++...-+..||..+..+ ...+.-+++|+.|.+.--..||
T Consensus 1 M~I~v---NG~~~e--~-~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~~VgGG 65 (73)
T 2kl0_A 1 MLVTI---NGEQRE--V-QSASVAALMTE----LDCTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILTPRQGG 65 (73)
T ss_dssp CCEEE---TTEEEC--C-CCSBHHHHHHH----TTCCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEECCCCCC
T ss_pred CEEEE---CCEEEE--c-CCCcHHHHHHH----cCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEccccCC
Confidence 44544 556544 4 66899998764 46778777888999988522 2344567789999875444443
No 249
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=91.06 E-value=0.4 Score=27.52 Aligned_cols=66 Identities=17% Similarity=0.350 Sum_probs=43.9
Q ss_pred CEEEEEeCCCCEEEEEEc--CCCcHHHHHHHHHhhhCCC-CCceEEEEcCEEcCCCCCccccccccccceEEEEEeecc
Q 032747 1 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~--~~~tv~~lK~~i~~~~gi~-~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (134)
|+|+| +|+.+ +++ ...|+.+|-+.+ +++ +...-+..||..+..+ ...+.-+++|+.|.+.--..||
T Consensus 1 M~I~v---NGe~~--e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG 69 (78)
T 2k5p_A 1 MNLTV---NGKPS--TVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGG 69 (78)
T ss_dssp CEEEE---TTEEE--ECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCS
T ss_pred CEEEE---CCEEE--EcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCC
Confidence 55555 55544 455 678999998754 566 6666788999988532 3445567889999875444333
No 250
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=90.91 E-value=1.5 Score=32.27 Aligned_cols=71 Identities=27% Similarity=0.400 Sum_probs=51.6
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCC-CceEEEEcC---------EEcCCCCCccccccccccceEEEE
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAG---------KQLEDGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~-~~q~L~~~g---------~~L~d~~~L~~~~i~~~~~i~l~~ 71 (134)
.+.|..++|....+.+++.+|+.++-+.|....|+.. +..-|.+.. ..|+.++++.+.+.....++.+.+
T Consensus 87 ~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~frv 166 (371)
T 3ivf_A 87 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLRR 166 (371)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEEE
Confidence 5788899999999999999999999999999999764 345565431 235556667766654445555544
Q ss_pred E
Q 032747 72 R 72 (134)
Q Consensus 72 ~ 72 (134)
+
T Consensus 167 K 167 (371)
T 3ivf_A 167 K 167 (371)
T ss_dssp C
T ss_pred E
Confidence 4
No 251
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=90.49 E-value=1.3 Score=24.39 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=39.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEE
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 70 (134)
|.+.|..++|+. .+++.+.|+.++-..+....+ ....-...+|+..+-+ +.+.+|+.|.+.
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~-----~~L~~~~~Veiv 61 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPLS-----YVLNSGDQVEVL 61 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCTT-----CBCCSSSBEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCCC-----cCcCCCCEEEEE
Confidence 788898888876 566788999999888754321 1122234688766543 444567777664
No 252
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=90.42 E-value=1 Score=27.48 Aligned_cols=43 Identities=9% Similarity=0.099 Sum_probs=36.4
Q ss_pred eeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEE
Q 032747 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYP 120 (134)
Q Consensus 78 ~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~ 120 (134)
.|.|+.++|..+.-+++.++|+.+|..-|....+.+...+.|+
T Consensus 15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~ 57 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLA 57 (109)
T ss_dssp EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEE
Confidence 4667888898999999999999999999998877776667666
No 253
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=90.17 E-value=1.7 Score=31.04 Aligned_cols=60 Identities=10% Similarity=0.047 Sum_probs=47.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCC-ceEEEEc---C--EEcCCCCCccccc
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA---G--KQLEDGRTLADYN 60 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~-~q~L~~~---g--~~L~d~~~L~~~~ 60 (134)
+.+.|..++|....+.+++.+|+.+|-+.|.+..|+... ..-|.+. | ..|+.++.+.+..
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~ 83 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQV 83 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhc
Confidence 467899999999999999999999999999999998653 3455543 3 3467677776654
No 254
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=90.17 E-value=2.7 Score=33.03 Aligned_cols=71 Identities=15% Similarity=0.274 Sum_probs=52.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCC-CceEEEEc---C--EEcCCCCCccccccccccceEEEEE
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~-~~q~L~~~---g--~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
+.+.|..++| .+.+.+++.+|+.+|-..|....|+.. ...-|.+. | ..|+.+..+.+.++..+..+.+.++
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 3578888888 678999999999999999999999864 34566653 2 3577778888876655555555444
No 255
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=89.74 E-value=0.93 Score=25.63 Aligned_cols=56 Identities=4% Similarity=0.077 Sum_probs=37.4
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhhhC-----CCCCceEEEEcCEEcCCCCCccccccccccceEEEEE
Q 032747 11 KTITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~g-----i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
....++ ....|+.+|.+.+..... ++.....+..||+.... +..+++|+.|.+...
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Pp 77 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPP 77 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECC
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCC
Confidence 345555 567899999999876531 22334567788887753 446778999887543
No 256
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=89.58 E-value=0.58 Score=26.30 Aligned_cols=55 Identities=11% Similarity=0.147 Sum_probs=38.4
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhhhCCCCCce--EEEEcCEEcCCCCCccccccccccceEEEE
Q 032747 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q--~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (134)
....+++....|+.+|.+.+..... ..... .+..||+....+ .-+++|+.|.+.-
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~p 72 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIP 72 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEEC
Confidence 3456677778899999999877641 01233 677899887643 4677889887753
No 257
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=88.58 E-value=0.65 Score=34.17 Aligned_cols=39 Identities=18% Similarity=0.085 Sum_probs=35.2
Q ss_pred CCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCC
Q 032747 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQS 123 (134)
Q Consensus 85 ~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g 123 (134)
.-....+.+.+.+|+.++++++++.+|++++.|.|.+++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~ 358 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEG 358 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSS
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcC
Confidence 345677888899999999999999999999999999998
No 258
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=88.43 E-value=2.6 Score=30.84 Aligned_cols=50 Identities=20% Similarity=0.329 Sum_probs=39.1
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCE-Ec-CCCCCccccc
Q 032747 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-QL-EDGRTLADYN 60 (134)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~-~L-~d~~~L~~~~ 60 (134)
....+.+.+..|+.++++.+++.++++++.|.|++.+. .. +.......+.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~ 373 (396)
T 4eut_A 322 TAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP 373 (396)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSC
T ss_pred eEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCC
Confidence 44567888999999999999999999999999999973 33 3334444543
No 259
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=88.41 E-value=1.1 Score=27.97 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=39.6
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEE--eCCeEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYP--IQSFIL 126 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~--~~g~~l 126 (134)
..|.|+.++|..+.-++..++|+.+|..-|... |.+...+.|+ |..+.+
T Consensus 44 t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l 94 (124)
T 1wj4_A 44 AQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKL 94 (124)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCC
Confidence 456778888989999999999999999999876 7777778777 445554
No 260
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=87.22 E-value=0.58 Score=37.60 Aligned_cols=41 Identities=17% Similarity=0.338 Sum_probs=36.2
Q ss_pred cCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCe
Q 032747 84 LTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSF 124 (134)
Q Consensus 84 ~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~ 124 (134)
...+..++.+.+.+|+.+++..|.+.+|||++.|.++++..
T Consensus 319 ~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~ 359 (676)
T 3qa8_A 319 VSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASG 359 (676)
T ss_dssp SSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSS
T ss_pred cccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccC
Confidence 44667788999999999999999999999999999998753
No 261
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=87.12 E-value=4 Score=25.61 Aligned_cols=60 Identities=33% Similarity=0.518 Sum_probs=40.9
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhh----hCCCC----CceEEEEc----CEEcCC----------C----CCccccccccc
Q 032747 11 KTITLEVESSDTIDNVKAKIQDK----EGIPP----DQQRLIFA----GKQLED----------G----RTLADYNIQKE 64 (134)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~----~gi~~----~~q~L~~~----g~~L~d----------~----~~L~~~~i~~~ 64 (134)
+.+++.|-.-+||.++|++|-.. .|.|. ++..|-+. +..|.| . +||+.|++.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 46788899999999999998653 36654 34444442 122322 1 35788999999
Q ss_pred cceEEE
Q 032747 65 STLHLV 70 (134)
Q Consensus 65 ~~i~l~ 70 (134)
+++.+.
T Consensus 119 atlal~ 124 (126)
T 3kuz_A 119 STIKVF 124 (126)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 998764
No 262
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=86.82 E-value=2.8 Score=24.45 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=28.2
Q ss_pred CCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEE
Q 032747 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (134)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~ 44 (134)
++..+.+.|+++.+..+|+.+|..+..+. ...++
T Consensus 20 ~DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~ 53 (85)
T 1ip9_A 20 KDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQ 53 (85)
T ss_dssp TTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEE
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEE
Confidence 45689999999999999999999998873 44444
No 263
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=86.59 E-value=2.2 Score=23.09 Aligned_cols=56 Identities=11% Similarity=0.230 Sum_probs=38.1
Q ss_pred CCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEE
Q 032747 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
+|+.+ ++ ...|+.+|.+.+ +.++....+..+|+.+..+ .-.+.-+++|+.|.+...
T Consensus 5 Ng~~~--~~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~ 60 (64)
T 2cu3_A 5 NGEPR--PL-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVAL 60 (64)
T ss_dssp TTEEE--CC-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEEC
T ss_pred CCEEE--Ec-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEee
Confidence 55555 44 678999999877 4556667777899887533 222345778999987543
No 264
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=86.29 E-value=0.81 Score=36.75 Aligned_cols=50 Identities=32% Similarity=0.604 Sum_probs=40.8
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEc-CEEcCCCCCcccc
Q 032747 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADY 59 (134)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~-g~~L~d~~~L~~~ 59 (134)
.+...+.+.++.|+.+++..|++.+|++++.|.+++. |..+++....+.|
T Consensus 321 ~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 321 GRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred cccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 4556788889999999999999999999999999976 4556666565554
No 265
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=85.99 E-value=4.3 Score=24.88 Aligned_cols=71 Identities=18% Similarity=0.268 Sum_probs=43.2
Q ss_pred CEEEEEeCC------C--CEEEEEEcC---CCcHHHHHHHHHhhhCCCCCc-------------eEEEEcCEEcCCCCCc
Q 032747 1 MQIFVKTLT------G--KTITLEVES---SDTIDNVKAKIQDKEGIPPDQ-------------QRLIFAGKQLEDGRTL 56 (134)
Q Consensus 1 m~i~v~~~~------g--~~~~~~v~~---~~tv~~lK~~i~~~~gi~~~~-------------q~L~~~g~~L~d~~~L 56 (134)
|+|+|+... | +.+.++++. ..||.+|.+.+.+.+ |..+ ..++.||+... .+
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~---~l 86 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWE---LL 86 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHH---HH
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeee---cc
Confidence 567776654 3 356688773 369999999999876 1112 22333333211 12
Q ss_pred --cccccccccceEEEEEeecc
Q 032747 57 --ADYNIQKESTLHLVLRLRGG 76 (134)
Q Consensus 57 --~~~~i~~~~~i~l~~~~~~~ 76 (134)
-++.+++|+.|.+.....||
T Consensus 87 ~gldt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 87 GELDYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp CTTTCBCCSSEEEEEEECSCCC
T ss_pred CCcCcCCCCCCEEEEeCCCCCC
Confidence 24668889998886665565
No 266
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=85.42 E-value=0.31 Score=27.77 Aligned_cols=47 Identities=6% Similarity=0.171 Sum_probs=34.1
Q ss_pred EEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEE
Q 032747 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (134)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 70 (134)
+++++..||.+|.+.+. ++.....+..||+....+ .-+++|+.|.+.
T Consensus 25 ~~~~~~~Tv~dLl~~L~----~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ 71 (77)
T 1rws_A 25 IEWREGMKVRDILRAVG----FNTESAIAKVNGKVVLED-----DEVKDGDFVEVI 71 (77)
T ss_dssp CCCCSSCCHHHHHHTTT----CSSCSSCEEETTEEECSS-----SCCCSSCCCBCS
T ss_pred EECCCCCcHHHHHHHhC----CCCcCEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 45567789999987653 566666788999988654 456778887764
No 267
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=85.12 E-value=4.1 Score=23.92 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=33.0
Q ss_pred eeeee-cCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCc-ceEEe
Q 032747 79 IKVKT-LTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQ-QRYPI 121 (134)
Q Consensus 79 i~v~~-~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~-q~L~~ 121 (134)
+.||. ..|..+.+.++++-+..+|..++.+..+++..+ ..+.|
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky 51 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKW 51 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEE
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 45553 346788899999999999999999999987655 44434
No 268
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=84.57 E-value=4.7 Score=24.17 Aligned_cols=70 Identities=23% Similarity=0.262 Sum_probs=54.2
Q ss_pred EEEEEeCCC---CEEEEEEcCCCcHHHHHHHHHhhhCCCC--CceEEEEcC---EEcCCCCCccccccccccceEEEE
Q 032747 2 QIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAG---KQLEDGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 2 ~i~v~~~~g---~~~~~~v~~~~tv~~lK~~i~~~~gi~~--~~q~L~~~g---~~L~d~~~L~~~~i~~~~~i~l~~ 71 (134)
+|+|...+. ....+.|..+..|+-+--++-+...++. ++--|.... ..+.-..+|..||+..++.+++..
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 577877654 4578999999999999999887776654 456666553 357888999999999999988754
No 269
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=84.32 E-value=6.5 Score=31.29 Aligned_cols=63 Identities=30% Similarity=0.472 Sum_probs=44.2
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhhh--CCCC------CceEEEEc----CE-EcCCC-------------CCccccccccc
Q 032747 11 KTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIFA----GK-QLEDG-------------RTLADYNIQKE 64 (134)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~--gi~~------~~q~L~~~----g~-~L~d~-------------~~L~~~~i~~~ 64 (134)
..+++.|-.-+||.++|++|-... |.|. ++..|-+. |+ .|.|. +||+.|++.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 447788889999999999998542 4443 44555542 33 34442 47999999999
Q ss_pred cceEEEEEe
Q 032747 65 STLHLVLRL 73 (134)
Q Consensus 65 ~~i~l~~~~ 73 (134)
+++.+..+.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999886554
No 270
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=83.99 E-value=1.3 Score=26.67 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=29.4
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhhhCCCCC-----ceEEEEcC
Q 032747 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPD-----QQRLIFAG 47 (134)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~-----~q~L~~~g 47 (134)
+..+.+-|+++.+..+|..+|.++++.+.+ ..+|.|..
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkD 64 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 64 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEEC
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEc
Confidence 346889999999999999999999886522 24666654
No 271
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=83.59 E-value=3.2 Score=24.99 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=31.3
Q ss_pred eeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCC
Q 032747 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPP 114 (134)
Q Consensus 78 ~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~ 114 (134)
-+.+-..+|...++.|+++.|+.++-+++.++.+...
T Consensus 11 vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~ 47 (100)
T 1wgr_A 11 VVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALS 47 (100)
T ss_dssp EEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCC
T ss_pred EEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCC
Confidence 3455677899999999999999999999999888553
No 272
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=82.80 E-value=4.4 Score=24.37 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=40.5
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCC-ceEEE-Ec-----CEEcCCCCCccc
Q 032747 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI-FA-----GKQLEDGRTLAD 58 (134)
Q Consensus 3 i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~-~q~L~-~~-----g~~L~d~~~L~~ 58 (134)
|.|-..+|....+.|++++|+.++-+.+..+.+.... ...|+ +. -+.++|+..+-+
T Consensus 12 vkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vve 74 (100)
T 1wgr_A 12 VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVE 74 (100)
T ss_dssp EEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHH
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHH
Confidence 5566678999999999999999999999999886643 33333 11 245677665433
No 273
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=82.55 E-value=5 Score=23.11 Aligned_cols=61 Identities=20% Similarity=0.267 Sum_probs=49.8
Q ss_pred EEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEc-CEEcCCCCCccccccccccceEEEEEee
Q 032747 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADYNIQKESTLHLVLRLR 74 (134)
Q Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~-g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (134)
.+.|..++....+-+--++++.+|+..--++.+ |.-+....+.+..=++.|+.+.+..|.+
T Consensus 27 vlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDR 88 (92)
T 1j0g_A 27 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDR 88 (92)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCS
T ss_pred EEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEeccccc
Confidence 468888888888888888999999988777765 6667888888888889999998877654
No 274
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=82.51 E-value=6.6 Score=24.29 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=45.5
Q ss_pred EEEEEEcCCCcHHHHHHHHHhh-hC-------CCCCceEEEEcCEEcC--CCCCccccccccccceEEE
Q 032747 12 TITLEVESSDTIDNVKAKIQDK-EG-------IPPDQQRLIFAGKQLE--DGRTLADYNIQKESTLHLV 70 (134)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~-~g-------i~~~~q~L~~~g~~L~--d~~~L~~~~i~~~~~i~l~ 70 (134)
.+.+-++|+++.++|-+++-.- ++ +.-+.-....+|++.. .+++|++.|+...+.|.+.
T Consensus 39 p~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 39 PFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp CEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred ceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 4678899999999998887653 33 3444557888999874 5689999999888888764
No 275
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=81.90 E-value=5.6 Score=23.03 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=47.4
Q ss_pred EEEEEcCCCcHHHHHHHHHhhh-C--CC--CCceEEEEcCEE--cCCCCCccccccccccceEEEE
Q 032747 13 ITLEVESSDTIDNVKAKIQDKE-G--IP--PDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~-g--i~--~~~q~L~~~g~~--L~d~~~L~~~~i~~~~~i~l~~ 71 (134)
..+.|+.++|+.++-++++... | +. +.-.+...+|.. +.++.++++-|+.+-..|.+..
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 4478999999999999998763 3 22 236778889977 9999999999999988887754
No 276
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=81.72 E-value=5.3 Score=25.08 Aligned_cols=58 Identities=22% Similarity=0.324 Sum_probs=39.3
Q ss_pred EEEEcC----CCcHHHHHHHHHhhhCCCCCceEEEE--cCEEc-----CC--CCCccccccccccceEEEEE
Q 032747 14 TLEVES----SDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQL-----ED--GRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 14 ~~~v~~----~~tv~~lK~~i~~~~gi~~~~q~L~~--~g~~L-----~d--~~~L~~~~i~~~~~i~l~~~ 72 (134)
.+.|++ ..|..+|-+.+....|.+. ...+.- ..+.| +| +++|+++|+++|+.+.+.-.
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~DE 79 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDE 79 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEES
T ss_pred EEEeCcccccccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEcc
Confidence 355553 4799999999988888764 444431 12333 22 47899999999998877543
No 277
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=81.68 E-value=5.4 Score=22.73 Aligned_cols=56 Identities=11% Similarity=0.221 Sum_probs=36.1
Q ss_pred EEEcCCCcHHHHHHHHHhhhC------C-----CCCceEEEEcCEEcCCCCCccccccccccceEEEE
Q 032747 15 LEVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~g------i-----~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (134)
++++...|+.+|.+.+..... + ......+..||+....... .+..+++|+.|.+..
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~-~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKG-LDTEIKDDDKIDLFP 85 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTCS-SSCBCCTTCEEEEEC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccCC-CCcCCCCCCEEEEeC
Confidence 456667899999999987641 0 1134567788887652211 234578899987753
No 278
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=80.77 E-value=6.2 Score=22.82 Aligned_cols=59 Identities=20% Similarity=0.333 Sum_probs=47.6
Q ss_pred EEEEEcCCCcHHHHHHHHHhhh-C--CCC---CceEEEEcC--EEcCCCCCccccccccccceEEEE
Q 032747 13 ITLEVESSDTIDNVKAKIQDKE-G--IPP---DQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~-g--i~~---~~q~L~~~g--~~L~d~~~L~~~~i~~~~~i~l~~ 71 (134)
..+.|+.++|+.++-++++.+. | +++ .-.+..++| +.+..+.++++-||.+-..|.+..
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 4478999999999999998763 3 322 356777888 899999999999999988887764
No 279
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=80.26 E-value=3.7 Score=25.63 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=37.6
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhh-cCCCCCcceEE--eCCeEE
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEK-EGIPPVQQRYP--IQSFIL 126 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~-~gip~~~q~L~--~~g~~l 126 (134)
..|.|+..+|..+.-+++.++|+.+|..-|... .+.....+.|+ |..+.+
T Consensus 53 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l 105 (127)
T 1s3s_G 53 TNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKEL 105 (127)
T ss_dssp CCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCC
Confidence 456788889999999999999999999999875 33445566665 344444
No 280
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=80.21 E-value=15 Score=29.26 Aligned_cols=64 Identities=28% Similarity=0.473 Sum_probs=44.8
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhhh--CCC------CCceEEEEc----CE-EcCCC-------------CCccccccccc
Q 032747 11 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA----GK-QLEDG-------------RTLADYNIQKE 64 (134)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~--gi~------~~~q~L~~~----g~-~L~d~-------------~~L~~~~i~~~ 64 (134)
..+++.|-.-+||.++|++|-... |.| +++..|-+. |+ .|.|. +||+.|++.+|
T Consensus 247 ~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~Dg 326 (627)
T 3ig3_A 247 AQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTDG 326 (627)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCCC
Confidence 557888999999999999997653 333 345556542 33 34331 47999999999
Q ss_pred cceEEEEEee
Q 032747 65 STLHLVLRLR 74 (134)
Q Consensus 65 ~~i~l~~~~~ 74 (134)
+++.+..+..
T Consensus 327 a~v~L~p~~~ 336 (627)
T 3ig3_A 327 SLVALVPKQV 336 (627)
T ss_dssp CEEEEEEC--
T ss_pred ceEEEEeccc
Confidence 9999876653
No 281
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=78.97 E-value=0.59 Score=28.69 Aligned_cols=75 Identities=16% Similarity=0.306 Sum_probs=40.6
Q ss_pred CEEEEEeCC------CCEEEEEEcC----CCcHHHHHHHHHhhhCCCCCceEEEEc-C--E------EcCCCCC---c--
Q 032747 1 MQIFVKTLT------GKTITLEVES----SDTIDNVKAKIQDKEGIPPDQQRLIFA-G--K------QLEDGRT---L-- 56 (134)
Q Consensus 1 m~i~v~~~~------g~~~~~~v~~----~~tv~~lK~~i~~~~gi~~~~q~L~~~-g--~------~L~d~~~---L-- 56 (134)
|+|.|+... |+...++++. ..||.+|-+.+.+... ..+-.|+.. | . .|-++.. +
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~--~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~g 82 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV--KERPDLLVDQTGQTLRPGILVLVNSCDAEVVGG 82 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC--CSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTS
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc--ccchhhEecCCCcccCCCeEEEECCeeeeccCC
Confidence 456666554 3444566663 2599999999988752 222222211 2 1 1222222 2
Q ss_pred cccccccccceEEEEEeecce
Q 032747 57 ADYNIQKESTLHLVLRLRGGT 77 (134)
Q Consensus 57 ~~~~i~~~~~i~l~~~~~~~~ 77 (134)
.++.+++|+.|.+..+..||.
T Consensus 83 ldt~L~dgD~V~fistlhg~~ 103 (110)
T 2k9x_A 83 MDYVLNDGDTVEFISTLHGGL 103 (110)
T ss_dssp SCCCCCSSCEEEEEECCCCC-
T ss_pred cccCCCCcCEEEEeCCCcccc
Confidence 246688899987766555554
No 282
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=78.66 E-value=6.5 Score=23.69 Aligned_cols=48 Identities=8% Similarity=0.071 Sum_probs=35.9
Q ss_pred eeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEE--eCCeEE
Q 032747 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYP--IQSFIL 126 (134)
Q Consensus 78 ~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~--~~g~~l 126 (134)
.|.|+.++|+.+.-++..++|+.+|..=|... +..+..+.|+ |..+.+
T Consensus 25 ~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l 74 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRAL 74 (109)
T ss_dssp EEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCC
Confidence 45677788888888999999999999999854 5555666665 344444
No 283
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=78.40 E-value=8.8 Score=23.20 Aligned_cols=66 Identities=9% Similarity=0.230 Sum_probs=45.2
Q ss_pred eCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEE---EcCEE--cCCCCCccccccccccceEEEEE
Q 032747 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQ--LEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 7 ~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~---~~g~~--L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
..+..-+++.+..+.|+.+++..++.+.+...+.+.|. ++|.. |+++..--.-.+..+..+++..+
T Consensus 16 ~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 16 ITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp CSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred eccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 34566778889999999999999999999877678776 46754 44333222223344567776655
No 284
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=78.37 E-value=8.1 Score=22.75 Aligned_cols=67 Identities=10% Similarity=0.243 Sum_probs=39.8
Q ss_pred CEEEEEeCC------C-CEEEEEEcCCCcHHHHHHHHHhhhC-CCC---------Cce-------EEEEcCEEcCCCCCc
Q 032747 1 MQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-IPP---------DQQ-------RLIFAGKQLEDGRTL 56 (134)
Q Consensus 1 m~i~v~~~~------g-~~~~~~v~~~~tv~~lK~~i~~~~g-i~~---------~~q-------~L~~~g~~L~d~~~L 56 (134)
|+++|+... | +.. +++ ..||.+|.+.+..... +.. ... .+..||+.......
T Consensus 4 m~v~V~~fa~lr~~~g~~~~--~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~~- 79 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPEL--PLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLEG- 79 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEE--EEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTTS-
T ss_pred eEEEEEEeHHHHHHhCCCeE--EEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccCC-
Confidence 567776654 2 334 444 6899999999987641 111 022 56778876642211
Q ss_pred cccccccccceEEEE
Q 032747 57 ADYNIQKESTLHLVL 71 (134)
Q Consensus 57 ~~~~i~~~~~i~l~~ 71 (134)
.+.-+++|+.|.+..
T Consensus 80 ~~~~L~~gD~V~i~p 94 (99)
T 2l52_A 80 LETLLKDSDEIGILP 94 (99)
T ss_dssp TTSCCCTTEEEEEEC
T ss_pred CCCCCCCCCEEEEEC
Confidence 233577889887754
No 285
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=78.22 E-value=3.5 Score=24.69 Aligned_cols=59 Identities=12% Similarity=0.250 Sum_probs=38.8
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCC-----------ceEEEEcC-EEcC------CCCCccccccccccceEEE
Q 032747 12 TITLEVESSDTIDNVKAKIQDKEGIPPD-----------QQRLIFAG-KQLE------DGRTLADYNIQKESTLHLV 70 (134)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~-----------~q~L~~~g-~~L~------d~~~L~~~~i~~~~~i~l~ 70 (134)
...+++++++|+.+|-+.+...-.+.-. ...|+..+ ..|+ =+++|.++|+.+|..|++.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 3468899999999999999884322211 23444333 1122 1356899999999888774
No 286
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=77.97 E-value=8.1 Score=22.52 Aligned_cols=42 Identities=14% Similarity=0.161 Sum_probs=28.7
Q ss_pred EEEEeCCCCEE-EEEEc-CCCcHHHHHHHHHhhhCCCCCceEEE
Q 032747 3 IFVKTLTGKTI-TLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLI 44 (134)
Q Consensus 3 i~v~~~~g~~~-~~~v~-~~~tv~~lK~~i~~~~gi~~~~q~L~ 44 (134)
|+-|....+.+ .+.++ ...+|.+||+.|..+.+.-..+.-|.
T Consensus 9 V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~ 52 (86)
T 2c7h_A 9 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQ 52 (86)
T ss_dssp EEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEE
T ss_pred EEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEE
Confidence 45555555443 47777 56799999999999887655455444
No 287
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=76.79 E-value=4.1 Score=29.02 Aligned_cols=38 Identities=21% Similarity=0.128 Sum_probs=34.0
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCC
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPP 114 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~ 114 (134)
+.+.|..++|...++.|+++.|+.+|=.+|++.-|+.-
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e 55 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLE 55 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSS
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCC
Confidence 55667788999999999999999999999999999764
No 288
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=75.03 E-value=6.4 Score=22.06 Aligned_cols=45 Identities=9% Similarity=0.172 Sum_probs=29.5
Q ss_pred eeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEE
Q 032747 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSFIL 126 (134)
Q Consensus 78 ~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l 126 (134)
++.|+........+++....|+++|-+ ..|+|+..-....+|+.+
T Consensus 2 ~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v 46 (74)
T 2l32_A 2 NVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPV 46 (74)
T ss_dssp EEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCC
T ss_pred EEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEEC
Confidence 345555544456688999999987665 456777766666666543
No 289
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=74.40 E-value=6.1 Score=30.66 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=38.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCC--CceEEEE
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIF 45 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~--~~q~L~~ 45 (134)
+.+.|..++|....+.+++.+|+.++-+.|..+.|+.. +..-|.+
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 35788899999999999999999999999999999974 3455554
No 290
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=72.77 E-value=6.1 Score=27.83 Aligned_cols=38 Identities=26% Similarity=0.470 Sum_probs=31.6
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCC
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPV 115 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~ 115 (134)
+.+.|...+| ++++.++++.|+.+|-.+|++..|+.-.
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~ 39 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREV 39 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCG
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCc
Confidence 3456677777 6889999999999999999999997643
No 291
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=71.68 E-value=13 Score=22.02 Aligned_cols=55 Identities=5% Similarity=0.080 Sum_probs=38.9
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhhh---CCCCCceEEEEcCEEcCCCCCccccccccccceEEE
Q 032747 11 KTITLEVESSDTIDNVKAKIQDKE---GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (134)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~---gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 70 (134)
..+.+++..++||.++-+...-.. .+......+..+|+... .+.-+.+|+.|.+.
T Consensus 26 ~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIy 83 (97)
T 2hj1_A 26 YLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIY 83 (97)
T ss_dssp EEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEEC
T ss_pred EEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEE
Confidence 346678899999999988775422 34444567788888776 44456779998874
No 292
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=70.61 E-value=6.9 Score=26.62 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=28.9
Q ss_pred EEEEEeccCCcHHHHHHHhhhhcCCCCC-cceEE
Q 032747 88 EIEIDIEPTDTIERIKERVEEKEGIPPV-QQRYP 120 (134)
Q Consensus 88 ~~~~~V~~~~tV~~lK~~i~~~~gip~~-~q~L~ 120 (134)
.++..+...+|+.+|++++++..+||++ .-||+
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW 174 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLW 174 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEE
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEE
Confidence 4667789999999999999999999997 67775
No 293
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=70.25 E-value=8 Score=27.54 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=31.8
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCC
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPP 114 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~ 114 (134)
+.+.|...+| ++.+.++++.|+.+|=..|++..|+.-
T Consensus 23 ~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e 59 (314)
T 1h4r_A 23 FTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRE 59 (314)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCC
T ss_pred eEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCC
Confidence 4556777788 788999999999999999999999864
No 294
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=69.31 E-value=8.1 Score=26.57 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=29.1
Q ss_pred EEEEEeccCCcHHHHHHHhhhhcCCCCC-cceEEe
Q 032747 88 EIEIDIEPTDTIERIKERVEEKEGIPPV-QQRYPI 121 (134)
Q Consensus 88 ~~~~~V~~~~tV~~lK~~i~~~~gip~~-~q~L~~ 121 (134)
.++..+...+|+.+|++.+++..+||++ .-||+.
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~ 187 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWN 187 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEE
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 4556779999999999999999999997 577764
No 295
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=68.62 E-value=9.2 Score=30.57 Aligned_cols=45 Identities=22% Similarity=0.207 Sum_probs=38.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCC-CceEEEE
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF 45 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~-~~q~L~~ 45 (134)
|.+.|..++|....+.+++.+|+.++-+.|..+.|+.. ...-|.+
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 35788999999999999999999999999999999754 4455554
No 296
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=68.39 E-value=14 Score=28.60 Aligned_cols=45 Identities=13% Similarity=0.026 Sum_probs=36.5
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCC--CcceEEe
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPP--VQQRYPI 121 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~--~~q~L~~ 121 (134)
+.+.|...+|....+.|+++.|+.+|-..+++..|+.. +.+-|++
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 34556677888999999999999999999999999974 4555544
No 297
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=68.13 E-value=17 Score=25.88 Aligned_cols=56 Identities=21% Similarity=0.260 Sum_probs=39.9
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCc-eEEE--Ec----CEEcCCCCCccc
Q 032747 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FA----GKQLEDGRTLAD 58 (134)
Q Consensus 3 i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~-q~L~--~~----g~~L~d~~~L~~ 58 (134)
+.|-..+|....+.|++++|+.||-+.+..+.+..... ..|+ +. -++|+|...+-+
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~d 96 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVE 96 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHH
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHH
Confidence 45556688899999999999999999988887765433 3333 11 266777766544
No 298
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=67.71 E-value=5.3 Score=22.77 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=28.8
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCC-----CCceEEEEcC
Q 032747 12 TITLEVESSDTIDNVKAKIQDKEGIP-----PDQQRLIFAG 47 (134)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~-----~~~q~L~~~g 47 (134)
.+.+.|+++.+..+|..+|.++++.. ....+|.|..
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc
Confidence 56789999999999999999999865 2445666653
No 299
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=67.24 E-value=16 Score=21.33 Aligned_cols=61 Identities=10% Similarity=0.141 Sum_probs=35.6
Q ss_pred CEEEEEEc--CCCcHHHHHHHHHhhhCCCCC-------------ceEEEEcCEEcCCCCCccccccccccceEEEEE
Q 032747 11 KTITLEVE--SSDTIDNVKAKIQDKEGIPPD-------------QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 11 ~~~~~~v~--~~~tv~~lK~~i~~~~gi~~~-------------~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
+...+++. +..||.+|.+.+.+...-... ...+..|++..+-.. =.+.-+++|+.|.+...
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~-~~d~~L~dgDeVa~~Pp 95 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEG-EKDYILEDGDIISFTST 95 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGT-GGGCBCCTTCEEEEEEC
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccC-CCCcCcCCCCEEEEECC
Confidence 45667776 678999999999877631111 112445555321000 02456788998877543
No 300
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=67.16 E-value=17 Score=21.43 Aligned_cols=38 Identities=29% Similarity=0.373 Sum_probs=32.2
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhhhCCCCCceE-EEEcCE
Q 032747 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGK 48 (134)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~-L~~~g~ 48 (134)
..+.+.|++.++=.++|+.++..+++.+..-+ +...|+
T Consensus 28 n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK 66 (93)
T 3r8s_T 28 NTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGK 66 (93)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCc
Confidence 57899999999999999999999999987654 445565
No 301
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=66.62 E-value=18 Score=22.34 Aligned_cols=58 Identities=12% Similarity=0.135 Sum_probs=39.9
Q ss_pred EEEcCCCcHHHHHHHHHhhhCCCCCc-eEEEEcCEEcCCCCCcccccc---ccccceEEEEE
Q 032747 15 LEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADYNI---QKESTLHLVLR 72 (134)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gi~~~~-q~L~~~g~~L~d~~~L~~~~i---~~~~~i~l~~~ 72 (134)
+-|+.+.|++++...|.+..++++++ .-|..++.....+.+++++-- .++.-+++...
T Consensus 52 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfLyv~Ys 113 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYS 113 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHHcCCCCCeEEEEEe
Confidence 56889999999999999999998865 455567775455666665421 12335555543
No 302
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=65.95 E-value=20 Score=25.14 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=36.4
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEc-------CEEcCCCCCccc
Q 032747 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTLAD 58 (134)
Q Consensus 3 i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~-------g~~L~d~~~L~~ 58 (134)
|.|-..+|....+.|++++|+.+|-+.+..+.++....-..++. -++|+|...+-+
T Consensus 11 vkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~e 73 (256)
T 3hk0_A 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVVQ 73 (256)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHHH
T ss_pred EEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHHH
Confidence 45556788899999999999999999998877655433322222 267777766543
No 303
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=65.78 E-value=11 Score=21.78 Aligned_cols=34 Identities=9% Similarity=0.239 Sum_probs=29.3
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEE
Q 032747 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (134)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L 43 (134)
...+.+.|++.+|=.++|+.+++.+++.+..-+-
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT 55 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNT 55 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEe
Confidence 3578999999999999999999999998865543
No 304
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=65.25 E-value=12 Score=22.22 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=30.0
Q ss_pred EEEEEcCCCcHHHHHHHHHhhhCCCCCceEEE-EcCE
Q 032747 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK 48 (134)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~g~ 48 (134)
+.+.|++.+|=.++|+.+++.+++.+..-+-. ..|+
T Consensus 25 y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK 61 (95)
T 2zjr_Q 25 YSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGK 61 (95)
T ss_dssp CEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCC
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCc
Confidence 88999999999999999999999998665433 4443
No 305
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=62.93 E-value=23 Score=21.50 Aligned_cols=60 Identities=18% Similarity=0.261 Sum_probs=39.1
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhC-CC-------CCceEEE-Ec--C--EEcCCC-CCccccccc
Q 032747 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-IP-------PDQQRLI-FA--G--KQLEDG-RTLADYNIQ 62 (134)
Q Consensus 3 i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g-i~-------~~~q~L~-~~--g--~~L~d~-~~L~~~~i~ 62 (134)
|.+=.++|-...++++.++|+.++|+.+-++-. .| ++.-.+. .+ | .++.|+ +.|.+....
T Consensus 22 v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf 95 (108)
T 2v1y_A 22 VECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF 95 (108)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS
T ss_pred EEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc
Confidence 445567898999999999999999998877632 11 2222222 22 3 346454 778887654
No 306
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=61.89 E-value=11 Score=21.40 Aligned_cols=35 Identities=9% Similarity=0.025 Sum_probs=28.3
Q ss_pred EEEEEeccCCcHHHHHHHhhhhcCCC-----CCcceEEeC
Q 032747 88 EIEIDIEPTDTIERIKERVEEKEGIP-----PVQQRYPIQ 122 (134)
Q Consensus 88 ~~~~~V~~~~tV~~lK~~i~~~~gip-----~~~q~L~~~ 122 (134)
.+.+.|.++-+..+|..+|.++.+.+ ....++-|+
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYk 42 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQ 42 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEE
Confidence 57889999999999999999999976 344556554
No 307
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=60.95 E-value=23 Score=25.18 Aligned_cols=35 Identities=9% Similarity=0.172 Sum_probs=28.8
Q ss_pred eeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCC
Q 032747 80 KVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPP 114 (134)
Q Consensus 80 ~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~ 114 (134)
.|-..+|.+.++.|+++.|+++|-..+..+.+.+.
T Consensus 35 kv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~ 69 (281)
T 4gmv_A 35 RVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGY 69 (281)
T ss_dssp EEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCC
T ss_pred EEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCC
Confidence 34456778999999999999999999998887543
No 308
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=60.06 E-value=15 Score=21.95 Aligned_cols=28 Identities=7% Similarity=0.049 Sum_probs=25.0
Q ss_pred CcEEEEEeccCCcHHHHHHHhhhhcCCC
Q 032747 86 GKEIEIDIEPTDTIERIKERVEEKEGIP 113 (134)
Q Consensus 86 ~~~~~~~V~~~~tV~~lK~~i~~~~gip 113 (134)
+..+.+.|.++-+..+|..+|.++.+++
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 4478999999999999999999998876
No 309
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=59.95 E-value=20 Score=21.00 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=31.8
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhhhCCCCCceE-EEEcCE
Q 032747 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGK 48 (134)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~-L~~~g~ 48 (134)
..+.+.|++.++=.++|+.++..+++.+..-+ +...|+
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK 60 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGK 60 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCc
Confidence 67899999999999999999999999986653 345554
No 310
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=59.60 E-value=27 Score=24.13 Aligned_cols=38 Identities=11% Similarity=0.060 Sum_probs=31.6
Q ss_pred eeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCc
Q 032747 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQ 116 (134)
Q Consensus 79 i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~ 116 (134)
+.|-..+|.+.++.|+++.|+.+|-..+..+.+++...
T Consensus 37 v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~ 74 (291)
T 3tca_A 37 VKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNV 74 (291)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCT
T ss_pred EEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCC
Confidence 33445678889999999999999999999999987654
No 311
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=59.20 E-value=34 Score=23.63 Aligned_cols=37 Identities=16% Similarity=0.129 Sum_probs=31.4
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCC
Q 032747 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (134)
Q Consensus 3 i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~ 39 (134)
|.|-..+|....+.|++++|..++-+.+..+.+++..
T Consensus 37 v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~ 73 (291)
T 3tca_A 37 VKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCN 73 (291)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCC
T ss_pred EEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCC
Confidence 4555678888899999999999999999999987654
No 312
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=58.94 E-value=9.5 Score=21.49 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=24.8
Q ss_pred CCccccccccccceEEEEEeecceeeeeeecCCcEEEE
Q 032747 54 RTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEI 91 (134)
Q Consensus 54 ~~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~ 91 (134)
+.|.+.|+.+|+.|.+.-+.+-+-++.++. .|..+.+
T Consensus 26 ~rL~~lGl~pG~~v~V~~~~p~~gpi~v~v-~g~~iaL 62 (81)
T 2k5l_A 26 RRIMDMGITRGCEIYIRKVAPLGDPIQINV-RGYELSL 62 (81)
T ss_dssp HHHHHHTCCTTCEEEEEEECTTSCCEEEEE-TTEEEEE
T ss_pred HHHHHCCCCCCCEEEEEEeCCCCCCEEEEE-CCEEEEc
Confidence 358889999999999877765445555555 3334443
No 313
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.20 E-value=20 Score=21.02 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=30.1
Q ss_pred CcHHHHHHHHHhhhCCCCCceEEEE--cCEEcCCCCCcccc
Q 032747 21 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADY 59 (134)
Q Consensus 21 ~tv~~lK~~i~~~~gi~~~~q~L~~--~g~~L~d~~~L~~~ 59 (134)
.+..+|+.+....++++....+|.. +|..++|+.-...+
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tL 68 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTL 68 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTS
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhC
Confidence 4799999999999999766677765 48888777655554
No 314
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=58.15 E-value=25 Score=20.37 Aligned_cols=34 Identities=12% Similarity=0.229 Sum_probs=29.4
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEE
Q 032747 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (134)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L 43 (134)
...+.+.|++.++=.++|+.++..+++.+..-+-
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNT 56 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNT 56 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEE
Confidence 3578999999999999999999999998865543
No 315
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=57.53 E-value=23 Score=22.23 Aligned_cols=59 Identities=10% Similarity=0.189 Sum_probs=40.2
Q ss_pred EEEEcCCCcHHHHHHHHHhhhCCCCCceEEE-EcCEEc-CCCCCcccccc---ccccceEEEEE
Q 032747 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQL-EDGRTLADYNI---QKESTLHLVLR 72 (134)
Q Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~g~~L-~d~~~L~~~~i---~~~~~i~l~~~ 72 (134)
.+-|+.+.|++++..-|.++.++++++--.+ |.+..+ ..+.+++++-- .++.-+++...
T Consensus 56 KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys 119 (130)
T 2zjd_A 56 KFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYA 119 (130)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCCCCCEEEEEEe
Confidence 3568899999999999999999988765545 655444 45566666421 12445666554
No 316
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=57.10 E-value=4.3 Score=24.74 Aligned_cols=60 Identities=25% Similarity=0.359 Sum_probs=45.9
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhhhCCCC--CceEEEEcC---EEcCCCCCccccccccccceEEE
Q 032747 11 KTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAG---KQLEDGRTLADYNIQKESTLHLV 70 (134)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~--~~q~L~~~g---~~L~d~~~L~~~~i~~~~~i~l~ 70 (134)
...++.|..+..|+.+--++-+...++. ++--|.... ..+.-..+|..||+..++.+++.
T Consensus 36 ~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ft 100 (112)
T 2lgx_A 36 RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFT 100 (112)
T ss_dssp BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBB
T ss_pred ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceec
Confidence 5677888899999999988887766553 355555543 35788899999999999988764
No 317
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=56.51 E-value=21 Score=22.23 Aligned_cols=59 Identities=12% Similarity=0.112 Sum_probs=38.8
Q ss_pred EEEEcCCCcHHHHHHHHHhhhCCCCCce-EEEEcCEEcCCCCCcccccc--c-cccceEEEEE
Q 032747 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADYNI--Q-KESTLHLVLR 72 (134)
Q Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q-~L~~~g~~L~d~~~L~~~~i--~-~~~~i~l~~~ 72 (134)
.+-|+.+.||+++...|.+...+++++- -|..++.....+.+++++-- + ++.-+++...
T Consensus 56 KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys 118 (125)
T 3m95_A 56 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFS 118 (125)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEec
Confidence 3568899999999999999999888664 44445543445566665421 1 2335555544
No 318
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=56.40 E-value=18 Score=28.38 Aligned_cols=37 Identities=24% Similarity=0.393 Sum_probs=31.2
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCC
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPP 114 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~ 114 (134)
+.+.|...+| ++.+.|+++.|+.+|=..|+...|++-
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e 41 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLRE 41 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCC
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCC
Confidence 4556667777 688999999999999999999999854
No 319
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=56.03 E-value=23 Score=21.39 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=33.3
Q ss_pred EEEEcCCCcHHHHHHHHHhhhCCCCCce-EEEEcCEEcCCCCCcccc
Q 032747 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADY 59 (134)
Q Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q-~L~~~g~~L~d~~~L~~~ 59 (134)
.+-|+.+.|++++..-|.+..++++++- -|..++.....+.+++++
T Consensus 47 KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 93 (110)
T 2r2q_A 47 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQL 93 (110)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred EEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHH
Confidence 3578889999999999999999888654 444455544455666664
No 320
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=55.12 E-value=12 Score=21.42 Aligned_cols=36 Identities=14% Similarity=0.265 Sum_probs=24.4
Q ss_pred CccccccccccceEEEEEeecceeeeeeecCCcEEEE
Q 032747 55 TLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEI 91 (134)
Q Consensus 55 ~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~ 91 (134)
.|.+.|+.+|+.|.+.-+.+-+-++.++. .|..+.+
T Consensus 30 rL~~mGl~pG~~V~V~~~~p~~gpi~v~v-~g~~iaL 65 (86)
T 2k4y_A 30 KIMDMGIVRGTEIYIEGKAPMGDPIALRL-RGYSLSL 65 (86)
T ss_dssp HHHHHTCCTTCEEEEEEECTTSCSEEEEE-TTEEEEE
T ss_pred HHHHCCCCCCCEEEEEEeCCCCCCEEEEE-CCEEEEc
Confidence 58889999999999877665445556655 3334443
No 321
>2gcx_A FEOA, ferrous iron transport protein A; NMR {Klebsiella pneumoniae} SCOP: b.34.1.2
Probab=54.25 E-value=11 Score=20.65 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=24.9
Q ss_pred CCccccccccccceEEEEEeecceeeeeeecCCcEEEEE
Q 032747 54 RTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEID 92 (134)
Q Consensus 54 ~~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~ 92 (134)
+.|.+.|+.+|+.|.+.-+.+-+-++.++. .+..+.+.
T Consensus 24 ~rL~~lGl~pG~~v~v~~~~p~~gpi~v~v-~~~~iaL~ 61 (75)
T 2gcx_A 24 QKLLSLGMLPGSSFHVVRVAPLGDPVHIET-RRVSLVLR 61 (75)
T ss_dssp HHHTTTTCCSSEEEEECCCCSSCCEEEEEE-TTEEEEEE
T ss_pred HHHHHCCCCCCCEEEEEEeCCCCCCEEEEE-CCEEEEcC
Confidence 358889999999998866655444566665 34444443
No 322
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=54.02 E-value=28 Score=19.75 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=35.7
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEE
Q 032747 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (134)
Q Consensus 3 i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~ 44 (134)
|.+..++++.-.++|.|+.|+.+--.+.-+..++.++.-...
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~ 45 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 45 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 567778888888999999999999999999999988665554
No 323
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=52.58 E-value=41 Score=26.86 Aligned_cols=45 Identities=13% Similarity=0.174 Sum_probs=36.3
Q ss_pred eeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCC-CcceEEe
Q 032747 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPP-VQQRYPI 121 (134)
Q Consensus 77 ~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~-~~q~L~~ 121 (134)
+.+.|..++|...++.|+++.|+.+|-..++..-|+.- +.+-|.+
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 44567788999999999999999999999999999643 4455544
No 324
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=52.05 E-value=9.9 Score=21.07 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=21.9
Q ss_pred CCccccccccccceEEEEEeecceeeeeeec
Q 032747 54 RTLADYNIQKESTLHLVLRLRGGTMIKVKTL 84 (134)
Q Consensus 54 ~~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~ 84 (134)
+.|.+.|+.+|+.+.+.-+.+.| ++.++..
T Consensus 29 ~rL~~lGi~~G~~v~v~~~~p~g-p~~v~v~ 58 (77)
T 3e19_A 29 QKLVSMGLTPGATIQVLESHPMG-PIIISVG 58 (77)
T ss_dssp HHHHTTTCSTTCEEEEEEC--CC-CEEEEET
T ss_pred HHHHHCCCCCCCEEEEEEecCCC-CEEEEEC
Confidence 46889999999999987776656 6666654
No 325
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=51.89 E-value=33 Score=21.05 Aligned_cols=59 Identities=14% Similarity=0.166 Sum_probs=38.3
Q ss_pred EEEEcCCCcHHHHHHHHHhhhCCCCCceEEE-EcCEEcCCCCCcccccc---ccccceEEEEE
Q 032747 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNI---QKESTLHLVLR 72 (134)
Q Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~g~~L~d~~~L~~~~i---~~~~~i~l~~~ 72 (134)
.+-|+.+.|++++...|.+..++++++--.+ .++.....+.+++++-- .++.-+++...
T Consensus 50 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys 112 (118)
T 3rui_B 50 KYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYS 112 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred eEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEEe
Confidence 3568899999999999999999888654444 45543345556665421 22335555443
No 326
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=51.46 E-value=29 Score=21.23 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=39.0
Q ss_pred EEEEcCCCcHHHHHHHHHhhhCCCCCce-EEEEcCEEcCCCCCcccccc---ccccceEEEEE
Q 032747 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADYNI---QKESTLHLVLR 72 (134)
Q Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q-~L~~~g~~L~d~~~L~~~~i---~~~~~i~l~~~ 72 (134)
.+-|+.+.|++++..-|.+..++++++- -|..++.....+.+++++-- .++.-+++...
T Consensus 48 KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys 110 (117)
T 1eo6_A 48 KYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYS 110 (117)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEe
Confidence 3568889999999999999999888654 44445554445566666521 22445666554
No 327
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=49.23 E-value=34 Score=19.26 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=40.7
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEE
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (134)
+|+|.+++|..+ +++.+.|+.|+-..|....+-. -.--..+|+..+- ++.+.+|+.|.+.-
T Consensus 7 ~i~v~tP~G~~~--~lp~GaT~~D~A~~Ih~~lg~~--~v~AkVNG~~v~L-----~~~L~~gd~VeIit 67 (78)
T 3hvz_A 7 EVFVFTPKGDVI--SLPIGSTVIDFAYAIHSAVGNR--MIGAKVDGRIVPI-----DYKVKTGEIIDVLT 67 (78)
T ss_dssp EEEEECTTSCEE--EEETTCBHHHHHHHHCHHHHHT--EEEEEETTEEECT-----TCBCCTTCBEEEEE
T ss_pred eEEEECCCCCEE--EecCCCCHHHHHHHhhhhhhcc--eEEEEECCEEcCC-----CcccCCCCEEEEEc
Confidence 578888888775 5669999999988887655311 1223357776653 34567788887643
No 328
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=49.18 E-value=26 Score=20.64 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=22.7
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHH
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK 27 (134)
+|++...+|....+++.++.|+.+.-
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~ 27 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEAL 27 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHH
Confidence 57888899999999999999988754
No 329
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=48.32 E-value=38 Score=20.21 Aligned_cols=39 Identities=13% Similarity=0.271 Sum_probs=29.8
Q ss_pred CcHHHHHHHHHhhhCCCCC--ceEEEE--cCEEcCCCCCcccc
Q 032747 21 DTIDNVKAKIQDKEGIPPD--QQRLIF--AGKQLEDGRTLADY 59 (134)
Q Consensus 21 ~tv~~lK~~i~~~~gi~~~--~q~L~~--~g~~L~d~~~L~~~ 59 (134)
.+..+|+.+....++++.+ ..+|.. +|..++|+.-...+
T Consensus 37 ~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tL 79 (100)
T 1f2r_I 37 SSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCL 79 (100)
T ss_dssp SSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSS
T ss_pred CCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcC
Confidence 5799999999999999753 356654 58999877766554
No 330
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=48.21 E-value=45 Score=20.61 Aligned_cols=65 Identities=14% Similarity=0.179 Sum_probs=41.7
Q ss_pred CCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCC------ceEEE---EcCEE--cCCCCCccccccccccceEEEEE
Q 032747 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI---FAGKQ--LEDGRTLADYNIQKESTLHLVLR 72 (134)
Q Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~------~q~L~---~~g~~--L~d~~~L~~~~i~~~~~i~l~~~ 72 (134)
.+..-+++.+..+.|+.+++..++.+.+...+ ++.|. ++|.. |+++..--.-.+..+..+++..+
T Consensus 17 ~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLfvc~k 92 (120)
T 2dhz_A 17 PDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFACTR 92 (120)
T ss_dssp TTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEEEECT
T ss_pred ccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 34555678889999999999999999886543 67665 46643 44433222223334566766544
No 331
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=47.03 E-value=35 Score=23.86 Aligned_cols=35 Identities=17% Similarity=0.090 Sum_probs=27.2
Q ss_pred eeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCC
Q 032747 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIP 113 (134)
Q Consensus 79 i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip 113 (134)
+.|-..+|.+.++.|+++.|+++|-..+..+.+.+
T Consensus 11 vkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~ 45 (256)
T 3hk0_A 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSV 45 (256)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHCCC---
T ss_pred EEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCC
Confidence 34556778899999999999999999998776543
No 332
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=46.12 E-value=28 Score=20.06 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=25.6
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhh
Q 032747 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (134)
Q Consensus 3 i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~ 33 (134)
+.+...+|-+|.++|+.+.-+..-|..|+..
T Consensus 39 viisf~ngatfqvevpgsqh~~sqk~~~erm 69 (104)
T 3chb_D 39 AIITFKNGATFQVEVPGSQHIDSQKKAIERM 69 (104)
T ss_dssp EEEECTTCCEEEECCCCTTSCHHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 5667788999999999998888888777754
No 333
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=45.07 E-value=35 Score=21.67 Aligned_cols=29 Identities=24% Similarity=0.499 Sum_probs=23.0
Q ss_pred CcEEEEEeccCCcHHHHHHHhhhhc--CCCC
Q 032747 86 GKEIEIDIEPTDTIERIKERVEEKE--GIPP 114 (134)
Q Consensus 86 ~~~~~~~V~~~~tV~~lK~~i~~~~--gip~ 114 (134)
.+.+.++|-.-|||.++|+||-+.. |+|.
T Consensus 40 ~~~i~VkVLdCDTItQvKeKiLDavYk~~Py 70 (138)
T 2r2o_A 40 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPL 70 (138)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTTTSCG
T ss_pred CCceeEEEeccccHHHHHHHHHHHHHcCCcc
Confidence 4578899999999999999998543 4544
No 334
>2k5f_A Ferrous iron transport protein A; SH3-like, alpha+beta, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum}
Probab=43.90 E-value=23 Score=21.15 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=23.8
Q ss_pred CccccccccccceEEEEEeecceeeeeeecCCcEEE
Q 032747 55 TLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIE 90 (134)
Q Consensus 55 ~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~ 90 (134)
-|.+.|+.+|+.|.+.-+.+.+-++.|+.. +..+.
T Consensus 26 rL~~lGl~pG~~V~Vv~~~P~ggpi~V~v~-g~~ia 60 (105)
T 2k5f_A 26 RLMDLGLVRGAKLKVLRFAPLGDPIEVNCN-GMLLT 60 (105)
T ss_dssp HHHHHTCSTTCEEEEEEECSSSCSEEEEET-TEEEE
T ss_pred HHHHcCCCCCCEEEEEEECCCCCCEEEEEC-CEEEE
Confidence 588899999999988777654445555553 33444
No 335
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=43.70 E-value=64 Score=20.90 Aligned_cols=81 Identities=16% Similarity=0.186 Sum_probs=48.9
Q ss_pred EEEcCCCcHHHHHHHHHhhhC-C---------CCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecceeeeeeec
Q 032747 15 LEVESSDTIDNVKAKIQDKEG-I---------PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTL 84 (134)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~g-i---------~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~ 84 (134)
++++. .||.+|.+.+..... + ......+..||+......- .+.-+++|+.|.+.....||.
T Consensus 18 ~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGDeVai~PpVsGG~------- 88 (168)
T 1v8c_A 18 LELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGATLDLFPPVAGGG------- 88 (168)
T ss_dssp EECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTCEEEEECSCCSEE-------
T ss_pred EEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCCEEEEECcccccc-------
Confidence 45555 899999999877631 0 0124467788887764322 234578899988755444441
Q ss_pred CCcEEEEEeccCCcHHHHHHHhhhh
Q 032747 85 TGKEIEIDIEPTDTIERIKERVEEK 109 (134)
Q Consensus 85 ~~~~~~~~V~~~~tV~~lK~~i~~~ 109 (134)
+.-.+ ..-+-..+|..|.+.
T Consensus 89 ----~~~~~-~~~~~~~~~~~i~ei 108 (168)
T 1v8c_A 89 ----FERTF-GAFPPWLLERYLEEW 108 (168)
T ss_dssp ----EEEEE-ETCCHHHHHHHHHHT
T ss_pred ----chhhh-hhCCHHHhhhhhhhc
Confidence 21111 234567778877763
No 336
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7
Probab=43.46 E-value=75 Score=21.59 Aligned_cols=69 Identities=12% Similarity=0.166 Sum_probs=44.1
Q ss_pred ccccccccceEEEEEeecceeeeeeecCCcEEEEE-eccCCcHHHHHHHhhhhcCCCCCcceEEeCCeEE
Q 032747 58 DYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEID-IEPTDTIERIKERVEEKEGIPPVQQRYPIQSFIL 126 (134)
Q Consensus 58 ~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~-V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~l 126 (134)
+.++..+..+++++......+..|+....+-..+. .+...+.+-+|+-++..++-..++.+-...|..+
T Consensus 49 Sh~iR~Dv~v~lvL~g~p~pp~tI~f~g~~lr~l~~PDErs~a~lI~kAL~~~~~~~~~~~~~~~pGi~v 118 (208)
T 2qwv_A 49 AQSHREDVVIHLVLESTRDYSRTITVEANEISDVGGFHEAALIALLVKALDASVGMGKEQTRVVQPGLTV 118 (208)
T ss_dssp SSSBCSSEEEEEEEEECSSSCEEEEEETTTC----CCSHHHHHHHHHHHHHHTTTCCTTCEEEEETTEEE
T ss_pred hccccCCeEEEEEEcCCCCCCeEEEEeCcccccCCCCchHHHHHHHHHHHHhccccccccccccCCCEEE
Confidence 35677788888877765455566665544444455 5556688888888888777666666666666644
No 337
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=42.01 E-value=50 Score=19.18 Aligned_cols=46 Identities=13% Similarity=0.101 Sum_probs=33.4
Q ss_pred EEEEcCCCcHHHHHHHHHhhhCCCCCce-EEEEcCEEc-CCCCCcccc
Q 032747 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQL-EDGRTLADY 59 (134)
Q Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q-~L~~~g~~L-~d~~~L~~~ 59 (134)
.+.|+.+.|++++..-|.++.++++++- -|..++..+ ..+.+++++
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~L 70 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTL 70 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHH
Confidence 4778899999999999999999987654 444465443 345566553
No 338
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=41.13 E-value=54 Score=21.24 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=29.0
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEE
Q 032747 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (134)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L 43 (134)
..+.|.|++..+=.++|+.++..+++.+..-+-
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNT 126 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNT 126 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEE
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCCcceEEEe
Confidence 578999999999999999999999998865543
No 339
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.76 E-value=53 Score=19.10 Aligned_cols=43 Identities=7% Similarity=0.176 Sum_probs=36.4
Q ss_pred eeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEe
Q 032747 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPI 121 (134)
Q Consensus 79 i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~ 121 (134)
+.|+-...+..-++|+|..+.++|---|+++..+.|.+..|.-
T Consensus 13 LvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~ 55 (91)
T 2daj_A 13 VVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLK 55 (91)
T ss_dssp EEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEES
T ss_pred EEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEec
Confidence 3555666778889999999999999999999999999887753
No 340
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=40.09 E-value=28 Score=25.52 Aligned_cols=55 Identities=9% Similarity=0.041 Sum_probs=40.0
Q ss_pred EEeCCCC----EEEEEEcCCCcHHHHHHHHHhhhCCCC-CceEEEEc----C--EEcCCCCCcccc
Q 032747 5 VKTLTGK----TITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFA----G--KQLEDGRTLADY 59 (134)
Q Consensus 5 v~~~~g~----~~~~~v~~~~tv~~lK~~i~~~~gi~~-~~q~L~~~----g--~~L~d~~~L~~~ 59 (134)
|...+|. ...+.+++.+|+.++-..+.+..|+.. +..-|.+. | ..|+.+..+.+.
T Consensus 12 V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~~~ 77 (375)
T 2al6_A 12 YFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSNV 77 (375)
T ss_dssp CCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHHHH
T ss_pred EEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchhhh
Confidence 4455666 889999999999999999999999843 33455542 2 247777777653
No 341
>2h3j_A Hypothetical protein PA4359; NESG, GFT structural genomics, PAT89, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.34.1.2
Probab=38.77 E-value=12 Score=20.43 Aligned_cols=29 Identities=24% Similarity=0.222 Sum_probs=20.8
Q ss_pred CccccccccccceEEEEEeecceeeeeee
Q 032747 55 TLADYNIQKESTLHLVLRLRGGTMIKVKT 83 (134)
Q Consensus 55 ~L~~~~i~~~~~i~l~~~~~~~~~i~v~~ 83 (134)
.|.+.|+.+|+.+.+.-+.+-+-++.++.
T Consensus 26 rL~~lGl~~G~~v~v~~~~p~~~p~~v~v 54 (75)
T 2h3j_A 26 RLFSMGLLPGAALRVVRIAPLGDPIQVET 54 (75)
T ss_dssp HHHHHTCCTTCEEEEEECCTTSCCCEEES
T ss_pred HHHHcCCCCCCEEEEEEECCCCCCEEEEE
Confidence 57888999999998876655444555554
No 342
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=38.76 E-value=46 Score=19.48 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=20.5
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHH
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK 27 (134)
+|++...+|....+++.+++|+.+.-
T Consensus 8 ~V~~~~~~g~~~~v~~~~g~tLL~aa 33 (108)
T 2bt6_A 8 TVHFINRDGETLTTKGKIGDSLLDVV 33 (108)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHH
T ss_pred EEEEECCCCCEEEEEECCCChHHHHH
Confidence 46666678898899999999987653
No 343
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=37.04 E-value=61 Score=18.75 Aligned_cols=42 Identities=12% Similarity=0.073 Sum_probs=36.2
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEE
Q 032747 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (134)
Q Consensus 3 i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~ 44 (134)
|.+..++++.-.++|.|+.|+.+--.+.-+..++.++.-...
T Consensus 10 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 51 (86)
T 1wxm_A 10 VKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVY 51 (86)
T ss_dssp EEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEE
T ss_pred EEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 667788988889999999999999999999999988666555
No 344
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=36.55 E-value=71 Score=20.33 Aligned_cols=33 Identities=6% Similarity=0.081 Sum_probs=28.8
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEE
Q 032747 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (134)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L 43 (134)
..+.|.|+..++=.++|+.++..+++.+..-+-
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNT 112 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNT 112 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEe
Confidence 578899999999999999999999998865543
No 345
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=36.36 E-value=78 Score=19.73 Aligned_cols=35 Identities=3% Similarity=0.083 Sum_probs=27.1
Q ss_pred EEEEeccCCcHHHHHHHhhhhcCCCCCcceEE-eCC
Q 032747 89 IEIDIEPTDTIERIKERVEEKEGIPPVQQRYP-IQS 123 (134)
Q Consensus 89 ~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~-~~g 123 (134)
..+.|..+.||+++..-|..+-++++++-..+ |-+
T Consensus 55 ~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn 90 (130)
T 2zjd_A 55 TKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNG 90 (130)
T ss_dssp CEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETT
T ss_pred cEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEEC
Confidence 34568889999999999999999988766544 443
No 346
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=36.21 E-value=61 Score=20.85 Aligned_cols=27 Identities=11% Similarity=0.057 Sum_probs=21.0
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHH
Q 032747 3 IFVKTLTGKTITLEVESSDTIDNVKAKI 30 (134)
Q Consensus 3 i~v~~~~g~~~~~~v~~~~tv~~lK~~i 30 (134)
|.+. .||+.+.+++++++|+.+.-...
T Consensus 5 i~~~-vNG~~~~v~~~~~~tLL~~Lr~~ 31 (161)
T 1rm6_C 5 LRLT-LNGRAREDLVPDNMLLLDYLRET 31 (161)
T ss_dssp EEEE-ETTEEEEEEEETTCBHHHHHHHT
T ss_pred EEEE-ECCEEEEEecCCcCcHHHHHHHc
Confidence 4443 48999999999999988876654
No 347
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=35.49 E-value=78 Score=20.34 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=29.0
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEE
Q 032747 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (134)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L 43 (134)
..+.|.|+..++=.++|+.++..+++.+..-+-
T Consensus 88 N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNT 120 (150)
T 4a17_R 88 NTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNT 120 (150)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEe
Confidence 578999999999999999999999998865543
No 348
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=35.25 E-value=28 Score=19.71 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=22.0
Q ss_pred CccccccccccceEEEEEeecceeeeeeec
Q 032747 55 TLADYNIQKESTLHLVLRLRGGTMIKVKTL 84 (134)
Q Consensus 55 ~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~ 84 (134)
.|.+.|+.+|+.|.+.-+.+-+-++.|+..
T Consensus 25 rL~~mGl~pG~~V~Vi~~ap~ggPi~v~v~ 54 (83)
T 2lx9_A 25 KLLSLGMLPGSSFNVVRVAPLGDPIHIETR 54 (83)
T ss_dssp HHHHSSCCSSSEEEEEEECTTTCCEEEECS
T ss_pred HHHHCCCCCCCEEEEEEeCCCCCcEEEEEC
Confidence 588899999999998777664445555543
No 349
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=35.11 E-value=80 Score=23.42 Aligned_cols=52 Identities=12% Similarity=0.073 Sum_probs=37.3
Q ss_pred CCCCEEEEEEcCCCcHHHHHHHHH--hhhCCC---CCceEEEEc----C--EEcCCCCCcccc
Q 032747 8 LTGKTITLEVESSDTIDNVKAKIQ--DKEGIP---PDQQRLIFA----G--KQLEDGRTLADY 59 (134)
Q Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~--~~~gi~---~~~q~L~~~----g--~~L~d~~~L~~~ 59 (134)
++|....+.+++++||.++-..|. .+.|+. ++..-|.+. | ..|+++.+|.+.
T Consensus 35 ~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~v 97 (392)
T 4eku_A 35 PGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGEV 97 (392)
T ss_dssp GGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHHHH
T ss_pred CCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECCCCceEECCCCCcHHHH
Confidence 677778899999999999999998 566642 334444432 2 457778777764
No 350
>1ltr_D ETB-R2, heat-labIle enterotoxin; B subunit, anti-HSV; 3.04A {Escherichia coli} SCOP: b.40.2.1
Probab=35.03 E-value=34 Score=20.02 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=24.5
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhh
Q 032747 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (134)
Q Consensus 3 i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~ 33 (134)
+.+...+|-.|.++|+.+.-+..-|..|+..
T Consensus 38 viisf~ngatfqvevpgsqh~~sqk~~~erm 68 (113)
T 1ltr_D 38 VIITFKSGATFQVEVPGSQHIDSQKKAIERM 68 (113)
T ss_dssp EEEECTTSCEEEECCCSTTSCSHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 4566788999999999988777777777654
No 351
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=34.52 E-value=44 Score=23.83 Aligned_cols=42 Identities=7% Similarity=0.182 Sum_probs=31.7
Q ss_pred CEEEEEeCCCCEEEEEEcC--CCcHHHHHHHHHhhhCCCC---CceEEEEc
Q 032747 1 MQIFVKTLTGKTITLEVES--SDTIDNVKAKIQDKEGIPP---DQQRLIFA 46 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~--~~tv~~lK~~i~~~~gi~~---~~q~L~~~ 46 (134)
+++.|..+||....++++. .+|+.++-+ ..|++. +..-|.+.
T Consensus 6 ~~i~V~l~dg~~~~~~i~~~~~tt~~el~e----~lgL~~~~~~~FaL~~~ 52 (322)
T 4dxa_B 6 EKVRIYRMDGSYRSVELKHGNNTTVQQIME----GMRLSQETQQYFTIWIC 52 (322)
T ss_dssp CEEEEECTTSCEEEEECTTGGGCCHHHHHT----TSSCCTTGGGGEEEEEE
T ss_pred eEEEEEEECCcEEEEEEcCCCCCcHHHHHH----HhCcCccccCeeEEEEE
Confidence 4788999999999999998 999999943 356653 23455543
No 352
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=34.09 E-value=61 Score=19.00 Aligned_cols=26 Identities=12% Similarity=0.245 Sum_probs=20.5
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHH
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK 27 (134)
+|++...+|+...+++.++.|+.+.-
T Consensus 7 ~v~~~~~~g~~~~~~~~~g~tlL~aa 32 (109)
T 2y5c_A 7 NVVFVDRSGQRIPVSGRVGDNVLHLA 32 (109)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHH
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHH
Confidence 45665678999899999999987754
No 353
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=33.88 E-value=49 Score=24.20 Aligned_cols=34 Identities=6% Similarity=0.042 Sum_probs=28.7
Q ss_pred eeeecCCc----EEEEEeccCCcHHHHHHHhhhhcCCC
Q 032747 80 KVKTLTGK----EIEIDIEPTDTIERIKERVEEKEGIP 113 (134)
Q Consensus 80 ~v~~~~~~----~~~~~V~~~~tV~~lK~~i~~~~gip 113 (134)
.|-..+|+ ...+.++++.|+.+|-..++++-||.
T Consensus 11 ~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~ 48 (375)
T 2al6_A 11 HYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVK 48 (375)
T ss_dssp CCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCS
T ss_pred EEEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCC
Confidence 34445666 89999999999999999999999983
No 354
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=33.74 E-value=26 Score=16.99 Aligned_cols=15 Identities=27% Similarity=0.576 Sum_probs=11.2
Q ss_pred CCcHHHHHHHhhhhc
Q 032747 96 TDTIERIKERVEEKE 110 (134)
Q Consensus 96 ~~tV~~lK~~i~~~~ 110 (134)
+.||.+||.-|++.+
T Consensus 2 sntvkelknyiqele 16 (46)
T 3he4_B 2 SNTVKELKNYIQELE 16 (46)
T ss_dssp -CCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHH
Confidence 678999998888643
No 355
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=33.71 E-value=67 Score=18.53 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=21.0
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHH
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~ 28 (134)
+|++...+|....+++.++.|+.+.-.
T Consensus 5 ~v~~~~~~g~~~~~~~~~g~tlL~a~~ 31 (103)
T 2wlb_A 5 KVFFVTPEGREIMIEGNEGDSILDLAH 31 (103)
T ss_dssp EEEEECTTCCEEEEEECTTCBHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHH
Confidence 466665788888999999999877643
No 356
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=32.66 E-value=33 Score=19.51 Aligned_cols=44 Identities=7% Similarity=0.092 Sum_probs=26.8
Q ss_pred HhhhCCCCCceEEEEcCEEcCCC--CCccccccccccceEEEEEee
Q 032747 31 QDKEGIPPDQQRLIFAGKQLEDG--RTLADYNIQKESTLHLVLRLR 74 (134)
Q Consensus 31 ~~~~gi~~~~q~L~~~g~~L~d~--~~L~~~~i~~~~~i~l~~~~~ 74 (134)
++..|+.+.+.-+..+|..+.+. ..+..+--..|..+.+.+...
T Consensus 47 A~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~ 92 (99)
T 3khf_A 47 AQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRTTAL 92 (99)
T ss_dssp HHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEECS
T ss_pred HHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCEEEEEEEEC
Confidence 34567888899999999888632 222222114566676666543
No 357
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=32.05 E-value=59 Score=21.12 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=21.1
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHH
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (134)
.+.+. .+|+.+.+++++++|+.++-..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (166)
T 1n62_A 5 HIELT-INGHPVEALVEPRTLLIHFIRE 31 (166)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHH
Confidence 45554 4899999999999998886554
No 358
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=31.99 E-value=1.3e+02 Score=24.42 Aligned_cols=58 Identities=10% Similarity=0.244 Sum_probs=38.3
Q ss_pred EEEEEcCCCcHHHHHHHHHhhhC--CCCC--------ceEEEEcCE--E----c--CCCCCccccccccccceEEE
Q 032747 13 ITLEVESSDTIDNVKAKIQDKEG--IPPD--------QQRLIFAGK--Q----L--EDGRTLADYNIQKESTLHLV 70 (134)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~g--i~~~--------~q~L~~~g~--~----L--~d~~~L~~~~i~~~~~i~l~ 70 (134)
..+.++++.|+.++-+.+..+.. +... ...++|... . . .-+++|+++|+.+|+.|.+.
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 714 QNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp EEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred EEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 45788888999999988888533 3221 134555422 1 1 12467999999999888764
No 359
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=31.65 E-value=90 Score=19.04 Aligned_cols=30 Identities=10% Similarity=0.197 Sum_probs=23.4
Q ss_pred EEEeccCCcHHHHHHHhhhhcCCCCCcceE
Q 032747 90 EIDIEPTDTIERIKERVEEKEGIPPVQQRY 119 (134)
Q Consensus 90 ~~~V~~~~tV~~lK~~i~~~~gip~~~q~L 119 (134)
.+.|..+.||+++..-|..+-.+++++-..
T Consensus 50 KflVp~~~tv~qf~~~iRkrl~l~~~~alF 79 (118)
T 3rui_B 50 KYLVPADLTVGQFVYVIRKRIMLPPEKAIF 79 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTCCEE
T ss_pred eEEcCCCCCHHHHHHHHHHHhCcCCCccEE
Confidence 355888999999999999888887765433
No 360
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae}
Probab=30.92 E-value=38 Score=22.70 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=37.1
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcC
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g 47 (134)
.+.|...+|..+.++=-...-...|+..+...++++.+.-.+...|
T Consensus 86 ~LrI~~K~g~~~~fdGF~~~D~~~L~~~fk~~f~i~Le~kEls~kG 131 (191)
T 3f5r_A 86 DLKINTKNQGVIQLDGFSQDDYNLIKNDFHRRFNIQVEQREHSLRG 131 (191)
T ss_dssp EEEEEESSSCEEEEEEECGGGHHHHHHHHHHHHCCCCEECSSTTTT
T ss_pred EEEEEECCCceEEecCCCHHHHHHHHHHHHHHcCCCceeeeeeccc
Confidence 5677888888888887777789999999999999988666665554
No 361
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=30.49 E-value=55 Score=21.18 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=20.5
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHH
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~ 28 (134)
.|.+. .||+.+.+++++++|+.++-.
T Consensus 5 ~i~~~-vNG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 5 TINLN-LNGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp EEEEE-ETTEEEEEEECSSSBHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCCHHHHHH
Confidence 55664 488999999999999888654
No 362
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=30.42 E-value=82 Score=18.19 Aligned_cols=45 Identities=13% Similarity=0.109 Sum_probs=33.5
Q ss_pred EEEEeCCCCE-EEEEEc--CCCcHHHHHHHHHhhhCCCCCceEEEEcC
Q 032747 3 IFVKTLTGKT-ITLEVE--SSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (134)
Q Consensus 3 i~v~~~~g~~-~~~~v~--~~~tv~~lK~~i~~~~gi~~~~q~L~~~g 47 (134)
+.||+.-+.. ..+.++ ...+-.++...++....++.....+.|..
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D 54 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTD 54 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEEC
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEEC
Confidence 5666664444 346666 45799999999999999877778888763
No 363
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=29.97 E-value=92 Score=18.61 Aligned_cols=40 Identities=18% Similarity=0.220 Sum_probs=31.1
Q ss_pred EEEeC-CCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEc
Q 032747 4 FVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (134)
Q Consensus 4 ~v~~~-~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 46 (134)
.||.- .|++..+.+...-+..+|..++...+|-+ ..|.|.
T Consensus 10 RiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~---ldL~y~ 50 (103)
T 2cu1_A 10 RVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQS---MDLHYT 50 (103)
T ss_dssp EEEEEETTEEEEEEEESSCCHHHHHHHHHHHHSSC---EEEEEC
T ss_pred EEEEEecCeEEEEeccCCccHHHHHHHHHHHhCCe---eeEEEe
Confidence 34433 57888899999999999999999999864 345554
No 364
>2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa}
Probab=36.12 E-value=11 Score=22.36 Aligned_cols=72 Identities=15% Similarity=0.266 Sum_probs=41.7
Q ss_pred cHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecceeeeeeecCCcEEEEEeccCCcHHH
Q 032747 22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIER 101 (134)
Q Consensus 22 tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~V~~~~tV~~ 101 (134)
....+++.++...++++. .+.++..|.++|+..-..+.+.........+.+... .+....||++
T Consensus 27 i~~~l~~ila~~l~i~~~---------~I~~d~~l~dLGlDSL~~veL~~~lE~~fgi~i~~~-------~l~~~~TV~~ 90 (103)
T 2lte_A 27 MEDHLLTVLSVASGVPKE---------EISRDSRMEDLAFDSLVVSELSLKLRKEFGVTGVDD-------ELDLLETVDE 90 (103)
Confidence 355667767777666542 355666778888866666666665544333333211 1234567777
Q ss_pred HHHHhhhh
Q 032747 102 IKERVEEK 109 (134)
Q Consensus 102 lK~~i~~~ 109 (134)
|-..|...
T Consensus 91 l~~~I~~~ 98 (103)
T 2lte_A 91 LFQLVEKH 98 (103)
Confidence 76666543
No 365
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=29.81 E-value=57 Score=21.06 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=21.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHH
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAK 29 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (134)
|.+.+. .+|+.+.+++++++|+.+.-..
T Consensus 10 m~i~~~-ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 10 MRISAT-INGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 345554 4789999999999998886654
No 366
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=29.66 E-value=90 Score=18.43 Aligned_cols=42 Identities=12% Similarity=0.078 Sum_probs=35.1
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEE
Q 032747 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (134)
Q Consensus 3 i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~ 44 (134)
|.+-.++++.-.++|.|+.|+.+--.+.-+..++.++.-...
T Consensus 16 irvhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 57 (96)
T 3ny5_A 16 VRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVY 57 (96)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCChHHeEEE
Confidence 567778888888999999999999888888899988665554
No 367
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=29.40 E-value=78 Score=20.47 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=20.9
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHH
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (134)
.+.+. .+|+.+.+++++++|+.++-..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (163)
T 1ffv_A 5 IITVN-VNGKAQEKAVEPRTLLIHFLRE 31 (163)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 45553 4899999999999998886554
No 368
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=28.60 E-value=89 Score=18.07 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=20.8
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHH
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK 27 (134)
+|++...+|....+++.++.|+.+.-
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlLeaa 27 (106)
T 1xlq_A 2 KVVYVSHDGTRRELDVADGVSLMQAA 27 (106)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 46776678888899999999987754
No 369
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=28.59 E-value=53 Score=16.01 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhhCCCCC
Q 032747 23 IDNVKAKIQDKEGIPPD 39 (134)
Q Consensus 23 v~~lK~~i~~~~gi~~~ 39 (134)
+.+|-+.++.++|+++.
T Consensus 18 ~~eLvk~leekfGVsaa 34 (40)
T 1dd4_C 18 LAELVKKLEDKFGVTAA 34 (40)
T ss_dssp HHHHHHHHHHHTCCCSC
T ss_pred HHHHHHHHHHHHCCCcc
Confidence 35666777889999863
No 370
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=28.29 E-value=78 Score=20.37 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=28.8
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEE
Q 032747 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (134)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L 43 (134)
..+.|.|+...+=.++|+.++..+++.+..-+-
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNT 122 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNT 122 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEe
Confidence 578899999999999999999999998865544
No 371
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=28.25 E-value=98 Score=18.92 Aligned_cols=26 Identities=35% Similarity=0.357 Sum_probs=21.1
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHH
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK 27 (134)
+|++...+|....+++.++.|+.+.-
T Consensus 23 ~Vt~~~~~G~~~~v~~~~G~tLL~aa 48 (126)
T 3hui_A 23 KINFVDHTGETRTVEVEEGATVMEAA 48 (126)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 56777678888899999999988743
No 372
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae}
Probab=27.02 E-value=98 Score=20.71 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=39.2
Q ss_pred eecceeeeeeecCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCCe
Q 032747 73 LRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQSF 124 (134)
Q Consensus 73 ~~~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~ 124 (134)
.+.+..+.|.+.++..+.+.==..+-.+.|+.-+...+++++++..+...|+
T Consensus 81 ~~rg~~LrI~~K~g~~~~fdGF~~~D~~~L~~~fk~~f~i~Le~kEls~kGw 132 (191)
T 3f5r_A 81 GCRGYDLKINTKNQGVIQLDGFSQDDYNLIKNDFHRRFNIQVEQREHSLRGW 132 (191)
T ss_dssp CSSSEEEEEEESSSCEEEEEEECGGGHHHHHHHHHHHHCCCCEECSSTTTTC
T ss_pred ccCCcEEEEEECCCceEEecCCCHHHHHHHHHHHHHHcCCCceeeeeecccc
Confidence 4567788888877766665533355789999999999999998887766653
No 373
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=26.99 E-value=1.1e+02 Score=24.50 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=31.2
Q ss_pred cCCCCCccccccccccceEEEEEeecceeeeeeecCCcEEEEEeccCCcHHHHHHHhhh
Q 032747 50 LEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEE 108 (134)
Q Consensus 50 L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~V~~~~tV~~lK~~i~~ 108 (134)
|.+++.|.+ .+ +..++.+.+-.+++ .+...+.++|-.-|||.++|++|-+
T Consensus 219 LnE~~LLre-~i-e~~~ltL~v~~~~~-------~~~~~i~vkVLdCDTItQVKeKiLd 268 (627)
T 3ig3_A 219 LSEDKLIRQ-QI-DYKTLTLHCVCPES-------EGSAQVPVKVLNCDSITQAKDKLLD 268 (627)
T ss_dssp SSGGGBCCS-CC-CCCEEEEEEECTTT-------C--CEEEEEEETTCBHHHHHHHHHH
T ss_pred ccHhhhhhh-hc-cceeEEEEEeccCC-------CCCCceeeEeeccCcHHHHHHHHHH
Confidence 556666665 22 34455444432221 2345788999999999999999974
No 374
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=26.81 E-value=97 Score=17.89 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=20.7
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHH
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK 27 (134)
+|++...+|....+++.++.|+.+.-
T Consensus 2 ~v~~~~~~g~~~~~~~~~g~tlL~aa 27 (106)
T 1uwm_A 2 KIIFIEHNGTRHEVEAKPGLTVMEAA 27 (106)
T ss_dssp EEEEECTTCCEEEEECCTTSBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 56776678888889999999987653
No 375
>3mhx_A Putative ferrous iron transport protein A; FEOA, zinc binding, prokaryotic SH3 stenotrophomonus maltophilia, metal transport; 1.70A {Stenotrophomonas maltophilia}
Probab=26.53 E-value=38 Score=19.03 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=21.3
Q ss_pred CccccccccccceEEEEEeecc-eeeeeee
Q 032747 55 TLADYNIQKESTLHLVLRLRGG-TMIKVKT 83 (134)
Q Consensus 55 ~L~~~~i~~~~~i~l~~~~~~~-~~i~v~~ 83 (134)
.|.+.|+.+|+.|.+.-+.+-| -++.|+.
T Consensus 30 rL~~lGl~pG~~v~V~~~~p~g~~pi~v~v 59 (85)
T 3mhx_A 30 RLRELGFVKGEEVRMVAKGPVGGEPLLVQV 59 (85)
T ss_dssp HHHHTTCCTTCEEEEEESCSSSCSCEEEEE
T ss_pred HHHHCCCCCCCEEEEEEeCCCCCCCEEEEE
Confidence 4888999999999987776544 4455554
No 376
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=26.40 E-value=90 Score=17.60 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=20.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHH
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAK 29 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (134)
++|++...+| ...++++++.|+.+.-..
T Consensus 1 ~~v~~~~~~g-~~~~~~~~g~tlL~a~~~ 28 (94)
T 1awd_A 1 YKVTLKTPSG-EETIECPEDTYILDAAEE 28 (94)
T ss_dssp CEEEEEETTE-EEEEECCTTSCHHHHHHH
T ss_pred CEEEEEeCCC-cEEEEECCCCcHHHHHHH
Confidence 3577766666 677899999998776543
No 377
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=26.29 E-value=34 Score=22.99 Aligned_cols=31 Identities=10% Similarity=0.197 Sum_probs=27.6
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhhhCCCCCce
Q 032747 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 41 (134)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q 41 (134)
..+.+.|++.++=.++|+.+++.+++.+..-
T Consensus 132 NkyvF~Vd~kANK~QIKqAVEkLFdVKV~kV 162 (198)
T 3bbo_V 132 NSLLFTVDVRADKKMIREAISNFFGVKVRKV 162 (198)
T ss_dssp CEECCEECTTCCHHHHHHTTTTTSCCCEEEC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeEE
Confidence 5788999999999999999999999887544
No 378
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=26.27 E-value=87 Score=17.80 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=20.3
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHH
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (134)
+|++...++....+++.++.|+.+.-..
T Consensus 6 ~v~~~~~~~~~~~~~~~~g~tlL~a~~~ 33 (98)
T 1jq4_A 6 TITAVTEDGESLRFECRSDEDVITAALR 33 (98)
T ss_dssp EEEEEETTTEEEEEEEESCCTHHHHHHH
T ss_pred EEEEEecCCCcEEEEeCCCChHHHHHHH
Confidence 4556555677788999999998876543
No 379
>2jx5_A GLUB(S27A); ubiquitin, ribosome, recombination, evolution, ribosomal protein; NMR {Giardia lamblia atcc 50803}
Probab=26.21 E-value=79 Score=16.66 Aligned_cols=53 Identities=19% Similarity=0.358 Sum_probs=37.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccc
Q 032747 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58 (134)
Q Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~ 58 (134)
|-+.|+..+ +.++++++....-.+|-..+... |. ...|-..|+.|.....|.+
T Consensus 1 mlvivrlqd-q~lpfelpaga~asqls~lls~~-gm---~fslhtqgrvlseaaelnd 53 (69)
T 2jx5_A 1 MLVIVRLQD-QTLPFELPAGARASQLSNLLSSS-GM---AFSLHTQGRVLSEAAELND 53 (69)
T ss_dssp CEEEEEETT-EEEEEECCTTCCHHHHHHHHHHS-SC---CCEEEETTEECCTTCCCCS
T ss_pred CeEEEEecc-ccccccccccccHHHHHHHHhhc-Cc---eEEEeecchhhhhHHhhCC
Confidence 567888764 88999999999999988766543 33 3346677888875554443
No 380
>1b44_D ETB-POL, protein (B-POL subunit of heat-labIle enterotoxin); B subunit, heat-labIle enterotoxin anti-HSV; 3.30A {Escherichia coli} SCOP: b.40.2.1
Probab=26.19 E-value=45 Score=19.95 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=23.5
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhh
Q 032747 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (134)
Q Consensus 3 i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~ 33 (134)
+.+...+|-.|.++|+.+.-+..-|..|+..
T Consensus 38 viisf~ngatfqvevpgsqh~~sqk~~~erm 68 (129)
T 1b44_D 38 VIITFKSGATFQVEVPGSQHIDSQKKAIERM 68 (129)
T ss_dssp EEEECTTSCEEEECCCCTTSCSTHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 4566788999999999887776666666543
No 381
>2k5i_A Iron transport protein; iron(II) transport protein A, FEOA, , structural genomic, structural genomics, PSI-2; NMR {Clostridium thermocellum}
Probab=25.10 E-value=62 Score=20.84 Aligned_cols=12 Identities=33% Similarity=0.454 Sum_probs=6.2
Q ss_pred HHHHHHhhhhcCC
Q 032747 100 ERIKERVEEKEGI 112 (134)
Q Consensus 100 ~~lK~~i~~~~gi 112 (134)
..++.+++. -|+
T Consensus 97 ~~~~~~L~~-lG~ 108 (162)
T 2k5i_A 97 RRFLFRMKN-LGI 108 (162)
T ss_dssp HHHHHHHHH-HTC
T ss_pred HHHHHHHHH-CCC
Confidence 344666664 454
No 382
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=24.83 E-value=53 Score=20.94 Aligned_cols=62 Identities=13% Similarity=0.194 Sum_probs=40.0
Q ss_pred EEEEcCCCcHHHHHHHHHhhhCC-CCCc----eEEEEc-----------------CEE-cCCCCCccccccccccceEEE
Q 032747 14 TLEVESSDTIDNVKAKIQDKEGI-PPDQ----QRLIFA-----------------GKQ-LEDGRTLADYNIQKESTLHLV 70 (134)
Q Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gi-~~~~----q~L~~~-----------------g~~-L~d~~~L~~~~i~~~~~i~l~ 70 (134)
.|-.=.+.|+.+|-..|....-- +... .+++|- |+. -+|+++|++.+..-|+-|.+.
T Consensus 57 QIYTW~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDyidva 136 (143)
T 4a6q_A 57 QIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIA 136 (143)
T ss_dssp EEEECTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCEEEEE
T ss_pred EEeeCCCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCEEEEE
Confidence 33344889999999888776311 1111 222221 222 257789999999999999988
Q ss_pred EEeec
Q 032747 71 LRLRG 75 (134)
Q Consensus 71 ~~~~~ 75 (134)
+.+++
T Consensus 137 I~pP~ 141 (143)
T 4a6q_A 137 ITPPN 141 (143)
T ss_dssp EECGG
T ss_pred EeCCC
Confidence 87654
No 383
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=24.29 E-value=1.1e+02 Score=17.94 Aligned_cols=58 Identities=12% Similarity=0.074 Sum_probs=37.2
Q ss_pred EEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEc-CCCCCccccc--cccccceEEEEE
Q 032747 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYN--IQKESTLHLVLR 72 (134)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L-~d~~~L~~~~--i~~~~~i~l~~~ 72 (134)
-.+.|+.+.|++++..-|.++.++. ..-|..++..+ ..+.+++++- -+++.-+++...
T Consensus 30 ~KflV~~~~t~~~~~~~lRkrL~l~--alFlyvn~~~~Ps~d~~m~~LY~~~kdDGfLyi~Ys 90 (96)
T 1wz3_A 30 SKFKVSGSDKFANVIDFLRRQLHSD--SLFVYVNSAFSPNPDESVIDLYNNFGFDGKLVVNYA 90 (96)
T ss_dssp CEEEEETTSBTHHHHHHHHHHHTCS--SCEEEEEEEECCCTTSBHHHHHHHHCBTTBEEEEEE
T ss_pred cEEEeCCCCcHHHHHHHHHHhcCCc--eEEEEECCcccCChhhHHHHHHHHhCCCCEEEEEEe
Confidence 3467889999999999999999887 44454444243 4456666541 123445655543
No 384
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=23.07 E-value=1.1e+02 Score=17.15 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=19.4
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHH
Q 032747 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (134)
Q Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~ 28 (134)
+|++...+| ...+++.++.|+.+.-.
T Consensus 3 ~v~~~~~~g-~~~~~~~~g~tlL~a~~ 28 (95)
T 1frr_A 3 KTVLKTPSG-EFTLDVPEGTTILDAAE 28 (95)
T ss_dssp EEEEEETTE-EEEEEECTTCCHHHHHH
T ss_pred EEEEEeCCC-cEEEEeCCCCcHHHHHH
Confidence 566765676 67789999999877543
No 385
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=22.54 E-value=1.2e+02 Score=21.53 Aligned_cols=33 Identities=12% Similarity=0.334 Sum_probs=26.1
Q ss_pred eeeeeecCCcEEEEEecc--CCcHHHHHHHhhhhcCCCC
Q 032747 78 MIKVKTLTGKEIEIDIEP--TDTIERIKERVEEKEGIPP 114 (134)
Q Consensus 78 ~i~v~~~~~~~~~~~V~~--~~tV~~lK~~i~~~~gip~ 114 (134)
.+.|-..+|....+.|++ +.|+.+|- +..|++.
T Consensus 7 ~i~V~l~dg~~~~~~i~~~~~tt~~el~----e~lgL~~ 41 (322)
T 4dxa_B 7 KVRIYRMDGSYRSVELKHGNNTTVQQIM----EGMRLSQ 41 (322)
T ss_dssp EEEEECTTSCEEEEECTTGGGCCHHHHH----TTSSCCT
T ss_pred EEEEEEECCcEEEEEEcCCCCCcHHHHH----HHhCcCc
Confidence 456777889999999998 89999983 3467764
No 386
>3cjl_A Domain of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Pectobacterium atrosepticum SCRI1043}
Probab=22.42 E-value=1.1e+02 Score=17.69 Aligned_cols=38 Identities=24% Similarity=0.369 Sum_probs=29.8
Q ss_pred CEEEEEeCCC--CEEEEEEcCCCcHHHHHHHHHhhhCCCC
Q 032747 1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPP 38 (134)
Q Consensus 1 m~i~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gi~~ 38 (134)
++|+|..... +++.++....+-+..+-+++....+..+
T Consensus 6 YrITve~l~~~~~~l~Fe~~nhDDi~~Ive~~~~~~~~~~ 45 (88)
T 3cjl_A 6 YQITVEEKAEHQRTLSFEFSLHDDLFKLLEKVDGKMDMTP 45 (88)
T ss_dssp EEEEEEESSTTCCEEEEEEEESSCHHHHHHHHTTTSSSCH
T ss_pred EEEEEEEccCCCCCeEEeccChHHHHHHHHHhhccCCCCH
Confidence 3688876654 6788888888889999999977777654
No 387
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=22.31 E-value=1.3e+02 Score=25.79 Aligned_cols=31 Identities=29% Similarity=0.267 Sum_probs=27.0
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhh
Q 032747 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (134)
Q Consensus 3 i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~ 33 (134)
|.+=.++|-...++++.+.|+.++|+.+-++
T Consensus 54 vd~LLPnGi~i~~~v~~~~Tl~~iK~~lw~~ 84 (1092)
T 2y3a_A 54 VDFLLPTGIYIQLEVPREATISYIKQMLWKQ 84 (1092)
T ss_dssp EEEECTTCCEEEEEEETTCBHHHHHHHHHHH
T ss_pred EEEECCCceEEEEEecCcccHHHHHHHHHHH
Confidence 4455678999999999999999999999776
No 388
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=21.81 E-value=1.2e+02 Score=17.48 Aligned_cols=39 Identities=13% Similarity=0.363 Sum_probs=22.7
Q ss_pred hhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEE
Q 032747 32 DKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (134)
Q Consensus 32 ~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (134)
+..|+.+.+.-+..+|..+.+...+..+ +..+..+.+.+
T Consensus 49 ~~aGl~~GD~I~~ing~~v~~~~~~~~~-l~~~~~v~l~v 87 (113)
T 2pzd_A 49 HRAGLRPGDVILAIGEQMVQNAEDVYEA-VRTQSQLAVQI 87 (113)
T ss_dssp HHHTCCTTCEEEEETTEECCSHHHHHHH-HHHCSSEEEEE
T ss_pred HHcCCCCCCEEEEECCEECCCHHHHHHH-HhCCCeEEEEE
Confidence 3457778888888888887643333322 23345555444
No 389
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=21.59 E-value=1.8e+02 Score=21.54 Aligned_cols=38 Identities=8% Similarity=-0.078 Sum_probs=29.5
Q ss_pred cCCcEEEEEeccCCcHHHHHHHhh--hhcCC---CCCcceEEe
Q 032747 84 LTGKEIEIDIEPTDTIERIKERVE--EKEGI---PPVQQRYPI 121 (134)
Q Consensus 84 ~~~~~~~~~V~~~~tV~~lK~~i~--~~~gi---p~~~q~L~~ 121 (134)
++|+...+.++.+.||.++-..|+ .+.|+ .++.+-|.+
T Consensus 35 ~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~ 77 (392)
T 4eku_A 35 PGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRL 77 (392)
T ss_dssp GGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEE
T ss_pred CCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEE
Confidence 678888999999999999999998 56674 334555544
No 390
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=21.42 E-value=1.3e+02 Score=17.41 Aligned_cols=56 Identities=7% Similarity=0.095 Sum_probs=36.9
Q ss_pred EEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEc-CCCCCcccccc--ccccceEEEE
Q 032747 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNI--QKESTLHLVL 71 (134)
Q Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L-~d~~~L~~~~i--~~~~~i~l~~ 71 (134)
.+.|+.+.|++++..-|.++.++ +..-|..++..+ ..+.+++++-- +++..+++..
T Consensus 26 KflV~~~~t~~~~v~~lRkrL~l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Lyv~Y 84 (91)
T 3w1s_C 26 VCKISMSQSFAMVILFLKRRLKM--DHVYCYINNSFAPSPQQNIGELWMQFKTNDELIVSY 84 (91)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTC--SCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHhhCC--ceEEEEECCccCCCcccHHHHHHHHhCCCCEEEEEE
Confidence 46789999999999999999987 455555676543 34556655421 2344555544
No 391
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=20.95 E-value=78 Score=18.42 Aligned_cols=80 Identities=18% Similarity=0.293 Sum_probs=47.3
Q ss_pred EEEEEcCCCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCc-cccccccccceEEEEEeecceeeeeeecCCcEEEE
Q 032747 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-ADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEI 91 (134)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L-~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~ 91 (134)
+.+..++.+....+++.|++..+++++ .+.++..| .++|+..-+.+.+.........+.+... .
T Consensus 18 ~~~~m~~mei~~~l~~iiae~l~~~~~---------~I~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~~~---~--- 82 (101)
T 4dxe_H 18 LYFQSNAMENFDKVKDIIVDRLGVDAD---------KVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDE---E--- 82 (101)
T ss_dssp ------CTTHHHHHHHHHHHTTCCCGG---------GCCTTCBTTTTSCCCHHHHHHHHHHHHHHTTCCCCHH---H---
T ss_pred HHHhcCHHHHHHHHHHHHHHHHCcChh---------hCCCCCcchhhcCCCcHHHHHHHHHHHHHHCCCCCHH---H---
Confidence 446667778899999999999998764 35666677 8888866555555444333232222211 1
Q ss_pred EeccCCcHHHHHHHhhh
Q 032747 92 DIEPTDTIERIKERVEE 108 (134)
Q Consensus 92 ~V~~~~tV~~lK~~i~~ 108 (134)
+..-.||++|-.-|.+
T Consensus 83 -l~~~~Tv~dl~~~I~~ 98 (101)
T 4dxe_H 83 -AEKINTVGDAVKFINS 98 (101)
T ss_dssp -HTTCCBHHHHHHHHC-
T ss_pred -HHcCCCHHHHHHHHHH
Confidence 2456788888777764
No 392
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=20.77 E-value=54 Score=16.72 Aligned_cols=12 Identities=25% Similarity=0.678 Sum_probs=8.5
Q ss_pred CCeEEEEEeccc
Q 032747 122 QSFILFYFSNKC 133 (134)
Q Consensus 122 ~g~~l~~~~~~~ 133 (134)
+|..+||.|..|
T Consensus 32 E~mT~Fy~C~~C 43 (50)
T 1tfi_A 32 EPMTTFVVCNEC 43 (50)
T ss_dssp SCCEEEEEESSS
T ss_pred CCceEEEEcCCC
Confidence 466778887766
No 393
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=20.63 E-value=31 Score=19.05 Aligned_cols=78 Identities=10% Similarity=0.033 Sum_probs=46.4
Q ss_pred CCcHHHHHHHHHhhhCCCCCceEEEEcCEEcCCCCCccccccccccceEEEEEeecceeeeeeecCCcEEEEEeccCCcH
Q 032747 20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTI 99 (134)
Q Consensus 20 ~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~V~~~~tV 99 (134)
..+...+++.+....++++.. .-..+.++..+.++|+..-..+.+.........+.+.... +....||
T Consensus 4 ~~~~~~l~~il~~~l~~~~~~-----~~~~i~~~~~l~dlG~DSL~~vel~~~le~~fgi~i~~~~-------~~~~~Tv 71 (86)
T 1af8_A 4 LLTTDDLRRALVECAGETDGT-----DLSGDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDDV-------AGRVDTP 71 (86)
T ss_dssp SSCHHHHHHHHHTTCCCCSCC-----CTTTCSSTTSTTTTTCCTTTHHHHHHHHTTTTCSCCCTTT-------TTTCCSH
T ss_pred HHHHHHHHHHHHHHhCCCccc-----ccccCCCCCChhhcCCCHHHHHHHHHHHHHHHCCCcCHHH-------HHcCCCH
Confidence 457888999999999887631 0012445666788888665556554444333333222111 2346688
Q ss_pred HHHHHHhhhh
Q 032747 100 ERIKERVEEK 109 (134)
Q Consensus 100 ~~lK~~i~~~ 109 (134)
++|-..+.+.
T Consensus 72 ~~l~~~i~~~ 81 (86)
T 1af8_A 72 RELLDLINGA 81 (86)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887777653
No 394
>1wfy_A Regulator of G-protein signaling 14; RAP1/RAP2 interacting protein; regulators of G-protein signaling, RAS family, structural genomics; NMR {Mus musculus} SCOP: d.15.1.5
Probab=20.28 E-value=95 Score=18.62 Aligned_cols=40 Identities=15% Similarity=0.171 Sum_probs=31.7
Q ss_pred cCCcEEEEEeccCCcHHHHHHHhhhhcCCCCCcceEEeCC
Q 032747 84 LTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRYPIQS 123 (134)
Q Consensus 84 ~~~~~~~~~V~~~~tV~~lK~~i~~~~gip~~~q~L~~~g 123 (134)
+.++.+.+...++-++.++-+-|-.++|+..++-.+...|
T Consensus 25 p~~ksI~IksKptK~l~evLrPIL~KY~l~l~qv~v~~~g 64 (104)
T 1wfy_A 25 GLERVVRISAKPTKRLQEALQPILAKHGLSLDQVVLHRPG 64 (104)
T ss_dssp SSSSEEEEEECSSSBTTTTTHHHHTTTTCCTTTCCBCCTT
T ss_pred CCCcEEEEEecCCCcHHHHHHHHHHHcCCChhhEEEEecC
Confidence 5577888888889999998888888899887776665444
No 395
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=20.11 E-value=1.2e+02 Score=20.13 Aligned_cols=29 Identities=10% Similarity=0.039 Sum_probs=19.4
Q ss_pred CccccccccccceEEEEEeecceeeeeee
Q 032747 55 TLADYNIQKESTLHLVLRLRGGTMIKVKT 83 (134)
Q Consensus 55 ~L~~~~i~~~~~i~l~~~~~~~~~i~v~~ 83 (134)
.|.+.|+.+|+.|.+.-+.+-+-++.|+.
T Consensus 166 ~L~~~Gi~pG~~v~v~~~~p~~gpi~v~v 194 (214)
T 3hrs_A 166 YLERNGLQVGKTIRFLGYDDFSHLYSLEV 194 (214)
T ss_dssp HHHTTTCCTTCEEEEEEEETTTTEEEEEE
T ss_pred HHHHCCCCCCCEEEEEEecCCCCeEEEEE
Confidence 47778888888888876655334444444
Done!