Query 032748
Match_columns 134
No_of_seqs 150 out of 1033
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 05:27:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1944 Peroxisomal membrane p 99.9 1.5E-23 3.3E-28 160.0 13.2 115 16-132 46-166 (222)
2 PF04117 Mpv17_PMP22: Mpv17 / 91.1 0.12 2.5E-06 32.0 1.2 21 111-132 1-21 (68)
3 PF03988 DUF347: Repeat of Unk 55.5 41 0.0009 19.8 4.8 46 21-73 4-49 (55)
4 PF10929 DUF2811: Protein of u 52.3 27 0.00059 21.2 3.3 29 36-64 12-40 (57)
5 KOG0769 Predicted mitochondria 52.2 42 0.00091 26.9 5.2 47 35-81 47-93 (308)
6 COG1284 Uncharacterized conser 49.8 1.2E+02 0.0026 24.2 7.6 57 19-75 111-186 (289)
7 PF10960 DUF2762: Protein of u 45.8 50 0.0011 20.8 3.9 25 88-112 4-28 (71)
8 PF00140 Sigma70_r1_2: Sigma-7 39.4 14 0.00031 20.0 0.7 17 8-24 3-19 (37)
9 smart00337 BCL BCL (B-Cell lym 35.5 99 0.0021 20.3 4.4 28 35-63 35-62 (100)
10 TIGR02230 ATPase_gene1 F0F1-AT 33.6 1.5E+02 0.0032 19.9 5.0 33 49-81 38-72 (100)
11 KOG1314 DHHC-type Zn-finger pr 31.6 2.4E+02 0.0052 23.6 6.7 82 49-132 136-232 (414)
12 PF09734 Tau95: RNA polymerase 30.0 29 0.00064 27.5 1.3 60 4-74 232-291 (310)
13 PF09105 SelB-wing_1: Elongati 29.4 50 0.0011 19.5 1.9 23 36-58 5-28 (61)
14 TIGR02163 napH_ ferredoxin-typ 27.4 1.9E+02 0.0041 22.3 5.4 67 50-118 4-79 (255)
15 PF06027 DUF914: Eukaryotic pr 23.8 1.9E+02 0.004 23.6 4.9 44 25-69 173-216 (334)
16 PF11044 TMEMspv1-c74-12: Plec 23.6 1.1E+02 0.0023 17.7 2.5 15 98-112 8-22 (49)
17 PF03818 MadM: Malonate/sodium 22.5 2E+02 0.0043 17.6 6.2 34 11-44 3-36 (60)
18 PF11998 DUF3493: Protein of u 21.5 2.3E+02 0.005 18.0 6.6 50 48-99 14-63 (75)
19 PRK09609 hypothetical protein; 21.0 4.6E+02 0.01 21.3 7.2 53 27-81 58-110 (312)
No 1
>KOG1944 consensus Peroxisomal membrane protein MPV17 and related proteins [General function prediction only]
Probab=99.91 E-value=1.5e-23 Score=159.97 Aligned_cols=115 Identities=35% Similarity=0.518 Sum_probs=107.0
Q ss_pred HhhCcHHHHHHHHHHHH-HHHHHHHHhHhc-----CCcchHHHHHHHHHHhhhccchhHhHHHHHHHhHccCCCcHHHHH
Q 032748 16 LQVHPLRTKAITAGILA-GCSDAIAQKISG-----VKKLQLTRLLLLMFYGFAYGGPFGHFLHKLMDIIFKGKKDKKTVA 89 (134)
Q Consensus 16 l~~~Pl~t~~~ts~~l~-~~gD~laQ~~~~-----~~~~D~~Rt~r~~~~G~~~~gP~~h~wy~~L~~~~~~~~~~~~~~ 89 (134)
...+|+.++.++++.+. .+||+++|.++. .+.+|+.|++||+++|+++.||.+|+||+.||+.+|. ++..+++
T Consensus 46 ~~~~~~l~~~i~~~~~~~~~~d~~~q~~~~~~~~~~~~~d~~rtlr~~~~G~~f~gp~~~~Wy~~L~~~~p~-~~~~~~~ 124 (222)
T KOG1944|consen 46 FSLYPLLTKAITTSLLLAAAGDVISQSLEGRSKKLFQTLDLTRTLRMGIFGFLFVGPTLHYWYRLLSKLFPK-KTLITVV 124 (222)
T ss_pred hhhhhHHHHHHHHHHHHHHhchhhhhhhhhhcccccccccHHHHHHHHhhhhheeccchhHHHHHHHHHccC-ccHHHHH
Confidence 46688888888888888 999999999863 3679999999999999999999999999999999998 8999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhhh
Q 032748 90 KKVLLEQLTSSPWNNFLFMMYYGLVVEGVAVRFNFVGKIMEFS 132 (134)
Q Consensus 90 ~Kvl~DQ~i~~P~~~~~f~~~~~~~leg~~~~~~~~~~~~~f~ 132 (134)
+|++.||++++|+.+.+||.+++ ++||++.+++.++.+.+|-
T Consensus 125 ~kvl~dql~~~P~~~~~ff~~~~-~legk~~~~~~~~~~~~~~ 166 (222)
T KOG1944|consen 125 KKVLLDQLVFAPLFIVVFFLLMG-LLEGKTNEEAKAKLKRKFW 166 (222)
T ss_pred HHHHHhhhhhchHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999 9999999999999998873
No 2
>PF04117 Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR007248 The 22 kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes. PMP22 seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information []. Mpv17 is a closely related peroxisomal protein involved in the development of early-onset glomerulosclerosis []. A member of this family found in Saccharomyces cerevisiae (Baker's yeast) is an integral membrane protein of the inner mitochondrial membrane and has been suggested to play a role in mitochondrial function during heat shock [].; GO: 0016021 integral to membrane
Probab=91.09 E-value=0.12 Score=32.04 Aligned_cols=21 Identities=14% Similarity=0.050 Sum_probs=19.0
Q ss_pred HHHHhCCCCHHHHHHHHHhhhh
Q 032748 111 YGLVVEGVAVRFNFVGKIMEFS 132 (134)
Q Consensus 111 ~~~~leg~~~~~~~~~~~~~f~ 132 (134)
|+ ++||+|++++.++.|.+|.
T Consensus 1 Mg-~l~g~s~~~~~~~l~~~~~ 21 (68)
T PF04117_consen 1 MG-LLEGKSWEEIKEKLKRDYW 21 (68)
T ss_pred CC-cccCCCHHHHHHHHHHHHH
Confidence 46 8999999999999999885
No 3
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=55.55 E-value=41 Score=19.84 Aligned_cols=46 Identities=13% Similarity=0.124 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCCcchHHHHHHHHHHhhhccchhHhHHHH
Q 032748 21 LRTKAITAGILAGCSDAIAQKISGVKKLQLTRLLLLMFYGFAYGGPFGHFLHK 73 (134)
Q Consensus 21 l~t~~~ts~~l~~~gD~laQ~~~~~~~~D~~Rt~r~~~~G~~~~gP~~h~wy~ 73 (134)
..++.+++..-...||.++|. .+........+++.++... ...||+
T Consensus 4 W~a~ilt~~lGt~~~D~l~~~------lglg~~~~~~~~~~~l~~~-~~~~~~ 49 (55)
T PF03988_consen 4 WIAKILTTTLGTTAGDFLSKT------LGLGYLISTLIFAALLAVV-LALWYR 49 (55)
T ss_pred HHHHHHHHHhHHHHHHHHHhc------cCccHHHHHHHHHHHHHHH-HHHHHH
Confidence 357788888889999999994 4444555556666554443 345554
No 4
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=52.34 E-value=27 Score=21.17 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=22.7
Q ss_pred HHHHHhHhcCCcchHHHHHHHHHHhhhcc
Q 032748 36 DAIAQKISGVKKLQLTRLLLLMFYGFAYG 64 (134)
Q Consensus 36 D~laQ~~~~~~~~D~~Rt~r~~~~G~~~~ 64 (134)
+.+.+.++..+.||-.|.+..++-|+++.
T Consensus 12 ~~m~~fie~hP~WDQ~Rl~~aALa~FL~Q 40 (57)
T PF10929_consen 12 QAMKDFIETHPNWDQYRLFQAALAGFLLQ 40 (57)
T ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 45566667778899999999999988753
No 5
>KOG0769 consensus Predicted mitochondrial carrier protein [Energy production and conversion]
Probab=52.18 E-value=42 Score=26.92 Aligned_cols=47 Identities=13% Similarity=-0.010 Sum_probs=27.0
Q ss_pred HHHHHHhHhcCCcchHHHHHHHHHHhhhccchhHhHHHHHHHhHccC
Q 032748 35 SDAIAQKISGVKKLQLTRLLLLMFYGFAYGGPFGHFLHKLMDIIFKG 81 (134)
Q Consensus 35 gD~laQ~~~~~~~~D~~Rt~r~~~~G~~~~gP~~h~wy~~L~~~~~~ 81 (134)
.|++.|.+.+..-....|-+--...+.|++--+.+|||.++.+..-.
T Consensus 47 ~dvm~eiik~eg~lsLYqGl~p~~~~t~iSnFVYFY~y~~~k~~~~~ 93 (308)
T KOG0769|consen 47 SDVMWEIIKEEGVLSLYQGLGPVLVSTFISNFVYFYTYSYFKAVASK 93 (308)
T ss_pred HHHHHHHHhccchHHHhccccHHHHHHHHhhhHhhhhHHHHHHHHhc
Confidence 34444444322223334444445556666666778999999877643
No 6
>COG1284 Uncharacterized conserved protein [Function unknown]
Probab=49.82 E-value=1.2e+02 Score=24.22 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=37.8
Q ss_pred CcHHHHHHHHHHHHHHH--------------HHHHHhHhcCCcchHHHHHH-----HHHHhhhccchhHhHHHHHH
Q 032748 19 HPLRTKAITAGILAGCS--------------DAIAQKISGVKKLQLTRLLL-----LMFYGFAYGGPFGHFLHKLM 75 (134)
Q Consensus 19 ~Pl~t~~~ts~~l~~~g--------------D~laQ~~~~~~~~D~~Rt~r-----~~~~G~~~~gP~~h~wy~~L 75 (134)
++.+-.++.+|++.|+| |++||.++++..++..++.- ..+.++++.+|+-+.+|..+
T Consensus 111 ~~~ll~aifgG~l~G~G~glv~r~ggStGGtdIlA~~l~kk~g~~iG~~ll~vd~~i~~~a~~~~~~~~~~lytli 186 (289)
T COG1284 111 IDPLLAALFGGLLLGIGLGLVFRHGGSTGGTDILALILNKKFGISVGKILLLVDGFILLIAALVFGPLPNALYTLL 186 (289)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 56667799999999887 99999998766666665532 22233334445666666443
No 7
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=45.77 E-value=50 Score=20.81 Aligned_cols=25 Identities=16% Similarity=0.005 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Q 032748 88 VAKKVLLEQLTSSPWNNFLFMMYYG 112 (134)
Q Consensus 88 ~~~Kvl~DQ~i~~P~~~~~f~~~~~ 112 (134)
-+.|+++.|.+||-+++..++..+-
T Consensus 4 ei~k~~~sQG~fA~LFv~Ll~yvlK 28 (71)
T PF10960_consen 4 EIIKLALSQGIFAVLFVWLLFYVLK 28 (71)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 4678999999999998888887765
No 8
>PF00140 Sigma70_r1_2: Sigma-70 factor, region 1.2; InterPro: IPR009042 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. ; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SMY_F 1IW7_P 1SIG_A 3IYD_F 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P 3DXJ_P ....
Probab=39.45 E-value=14 Score=19.99 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=13.5
Q ss_pred HHHHHHHHHhhCcHHHH
Q 032748 8 AWRKYLIQLQVHPLRTK 24 (134)
Q Consensus 8 l~~~Y~~~l~~~Pl~t~ 24 (134)
....|.+.+.++|++|.
T Consensus 3 ~l~~Yl~ei~~~~LLt~ 19 (37)
T PF00140_consen 3 SLRLYLKEIGRYPLLTA 19 (37)
T ss_dssp HHHHHHHHHHHS-EETT
T ss_pred HHHHHHHHHcCCCCCCH
Confidence 46889999999999874
No 9
>smart00337 BCL BCL (B-Cell lymphoma); contains BH1, BH2 regions. (BH1, BH2, (BH3 (one helix only)) and not BH4(one helix only)). Involved in apoptosis regulation
Probab=35.54 E-value=99 Score=20.30 Aligned_cols=28 Identities=14% Similarity=0.270 Sum_probs=19.5
Q ss_pred HHHHHHhHhcCCcchHHHHHHHHHHhhhc
Q 032748 35 SDAIAQKISGVKKLQLTRLLLLMFYGFAY 63 (134)
Q Consensus 35 gD~laQ~~~~~~~~D~~Rt~r~~~~G~~~ 63 (134)
..+..+.+ ++..++|.|.+.+..+|+.+
T Consensus 35 ~~Va~~lf-~dg~inWGRIval~~F~~~l 62 (100)
T smart00337 35 GEVATELF-SDGNINWGRVVALLSFGGAL 62 (100)
T ss_pred HHHHHHHH-ccCCCCHHHHHHHHHHHHHH
Confidence 33444433 33559999999999998764
No 10
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=33.56 E-value=1.5e+02 Score=19.95 Aligned_cols=33 Identities=12% Similarity=0.049 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHhhhccchhHhHHH--HHHHhHccC
Q 032748 49 QLTRLLLLMFYGFAYGGPFGHFLH--KLMDIIFKG 81 (134)
Q Consensus 49 D~~Rt~r~~~~G~~~~gP~~h~wy--~~L~~~~~~ 81 (134)
-++....+..+|..+.+|+.-.-| .+||+.+++
T Consensus 38 ~~~~l~~~g~IG~~~v~pil~G~~lG~WLD~~~~t 72 (100)
T TIGR02230 38 IWEGLGMFGLIGWSVAIPTLLGVAVGIWLDRHYPS 72 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 355666788999988999887777 599999996
No 11
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=31.56 E-value=2.4e+02 Score=23.58 Aligned_cols=82 Identities=9% Similarity=-0.063 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHhhhccchh----------HhHHHHHH-HhHccCC----CcHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 032748 49 QLTRLLLLMFYGFAYGGPF----------GHFLHKLM-DIIFKGK----KDKKTVAKKVLLEQLTSSPWNNFLFMMYYGL 113 (134)
Q Consensus 49 D~~Rt~r~~~~G~~~~gP~----------~h~wy~~L-~~~~~~~----~~~~~~~~Kvl~DQ~i~~P~~~~~f~~~~~~ 113 (134)
.+-|.+-+++.|+ ++|-+ .+.||... ++..|.- .++...+.-+.+.-.+.--+....|.-.-.
T Consensus 136 ~F~~FLlf~ivG~-ih~tiI~~~~~~~~Iy~~W~~~~g~~hlp~v~ft~~~li~~vfslgla~gv~la~t~Lf~~qlk~- 213 (414)
T KOG1314|consen 136 YFLRFLLFSIVGC-IHGTIILVCAQYRGIYFRWYIKYGLRHLPIVFFTLSSLIALVFSLGLAIGVVLALTMLFFIQLKQ- 213 (414)
T ss_pred HHHHHHHHHHHhc-ccceeeehhHHHHHHHHHHHhhcccccCceeeccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-
Confidence 3557778888875 45543 35565433 3444431 122222222222222221222233333445
Q ss_pred HhCCCCHHHHHHHHHhhhh
Q 032748 114 VVEGVAVRFNFVGKIMEFS 132 (134)
Q Consensus 114 ~leg~~~~~~~~~~~~~f~ 132 (134)
++++++--|+|.+.|..+.
T Consensus 214 Il~nrt~IE~wi~~Ka~~r 232 (414)
T KOG1314|consen 214 ILNNRTGIESWIVEKAMDR 232 (414)
T ss_pred HHcCCcchHHHHHHHHHHH
Confidence 8999998888887776654
No 12
>PF09734 Tau95: RNA polymerase III transcription factor (TF)IIIC subunit; InterPro: IPR019136 Transcription factor IIIC (TFIIIC) is a multisubunit DNA binding factor that serves as a dynamic platform for assembly of pre-initiation complexes on class III genes. This entry represents subunit 5 (also known as the tau 95 subunit) which holds a key position in TFIIIC, exerting both upstream and downstream influence on the TFIIIC-DNA complex by rendering the complex more stable []. Once bound to tDNA-intragenic promoter elements, TFIIIC directs the assembly of TFIIIB on the DNA, which in turn recruits the RNA polymerase III (pol III) and activates multiple rounds of transcription.
Probab=29.97 E-value=29 Score=27.48 Aligned_cols=60 Identities=20% Similarity=0.294 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHhHhcCCcchHHHHHHHHHHhhhccchhHhHHHHH
Q 032748 4 VAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKLQLTRLLLLMFYGFAYGGPFGHFLHKL 74 (134)
Q Consensus 4 ~~~~l~~~Y~~~l~~~Pl~t~~~ts~~l~~~gD~laQ~~~~~~~~D~~Rt~r~~~~G~~~~gP~~h~wy~~ 74 (134)
......+.-.+++++||+.|+-..-.-+-..+ .....++++....|-+ ..||+-..|-++
T Consensus 232 ~~~~~~~~l~~lFeeRPIW~r~~L~~~~~~~~----------~~~~~k~~l~~v~Y~f-~~GPwr~~~vr~ 291 (310)
T PF09734_consen 232 VLQELIQELKKLFEERPIWTRRALLNHLPKSG----------SQSKLKRALPYVAYYF-KNGPWRDCWVRF 291 (310)
T ss_pred hHHHHHHHHHHHHhcCCccCHHHHHHhhhhcc----------cHHHHHHHHHhhEEEE-ecCcccceeEec
Confidence 45567788899999999988765533332222 4456678888888875 599999888664
No 13
>PF09105 SelB-wing_1: Elongation factor SelB, winged helix ; InterPro: IPR015189 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 1". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; PDB: 2V9V_A 1LVA_A 2PLY_A.
Probab=29.37 E-value=50 Score=19.46 Aligned_cols=23 Identities=17% Similarity=0.026 Sum_probs=14.9
Q ss_pred HHHHHhH-hcCCcchHHHHHHHHH
Q 032748 36 DAIAQKI-SGVKKLQLTRLLLLMF 58 (134)
Q Consensus 36 D~laQ~~-~~~~~~D~~Rt~r~~~ 58 (134)
.++||.+ |.+..+||.....-+.
T Consensus 5 kilaqiiqehregldwqeaatras 28 (61)
T PF09105_consen 5 KILAQIIQEHREGLDWQEAATRAS 28 (61)
T ss_dssp HHHHHHHHC-TT-EEHHHHHHHHT
T ss_pred HHHHHHHHHHHccCcHHHHHHHhh
Confidence 5789998 5677899986654443
No 14
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=27.45 E-value=1.9e+02 Score=22.27 Aligned_cols=67 Identities=16% Similarity=0.202 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhhccchhHhHHH--HHHH--hH---ccCCCcHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHhCCC
Q 032748 50 LTRLLLLMFYGFAYGGPFGHFLH--KLMD--II---FKGKKDKKTVAKKVLLEQLTSSPWNNFLFM--MYYGLVVEGV 118 (134)
Q Consensus 50 ~~Rt~r~~~~G~~~~gP~~h~wy--~~L~--~~---~~~~~~~~~~~~Kvl~DQ~i~~P~~~~~f~--~~~~~~leg~ 118 (134)
+||+...++...++.||..+.|. ..|. ++ +|. .+....+.-++....+..+.+..... ...+ ++-|+
T Consensus 4 ~r~~~~~~~~~lf~~~~~~~~~~~~G~l~~s~~~~~~~l-~dP~~~lq~~~a~~~~~~~~~~~~~iv~~~~~-l~~GR 79 (255)
T TIGR02163 4 LRRLVQLSILGLFLLGPYAGVWILKGNLSSSRLLGTIPL-SDPLITLQILLAGHSPPTNALIGALIIVAFYA-LFGGR 79 (255)
T ss_pred HHHHHHHHHHHHHHcchhhcceEEEecchHHHhcCCccC-cCHHHHHHHHHhcChhhHHHHHHHHHHHHHHH-HHhcc
Confidence 68999999999888899887775 3332 33 333 56777888888777776666655533 3335 55565
No 15
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=23.79 E-value=1.9e+02 Score=23.58 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHhHhcCCcchHHHHHHHHHHhhhccchhHh
Q 032748 25 AITAGILAGCSDAIAQKISGVKKLQLTRLLLLMFYGFAYGGPFGH 69 (134)
Q Consensus 25 ~~ts~~l~~~gD~laQ~~~~~~~~D~~Rt~r~~~~G~~~~gP~~h 69 (134)
++.+++++++.+++...+-++.+. ..=...+.++|.++.+|...
T Consensus 173 ~l~~a~lya~~nV~~E~~v~~~~~-~~~lg~~Glfg~ii~~iq~~ 216 (334)
T PF06027_consen 173 ALLGAILYAVSNVLEEKLVKKAPR-VEFLGMLGLFGFIISGIQLA 216 (334)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCH-HHHHHHHHHHHHHHHHHHHH
Confidence 567888888888876665332111 11234556666666665543
No 16
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=23.64 E-value=1.1e+02 Score=17.68 Aligned_cols=15 Identities=13% Similarity=-0.035 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHH
Q 032748 98 TSSPWNNFLFMMYYG 112 (134)
Q Consensus 98 i~~P~~~~~f~~~~~ 112 (134)
+|+-+.+...|.+.+
T Consensus 8 iFsvvIil~If~~iG 22 (49)
T PF11044_consen 8 IFSVVIILGIFAWIG 22 (49)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555555
No 17
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=22.49 E-value=2e+02 Score=17.61 Aligned_cols=34 Identities=21% Similarity=0.105 Sum_probs=30.2
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHHHHHHHHHhHhc
Q 032748 11 KYLIQLQVHPLRTKAITAGILAGCSDAIAQKISG 44 (134)
Q Consensus 11 ~Y~~~l~~~Pl~t~~~ts~~l~~~gD~laQ~~~~ 44 (134)
.-.+.++++.++|.-..-|+++.++..++-.+.+
T Consensus 3 ~i~~vl~~ngLitaFa~vG~~m~~S~~lS~~LT~ 36 (60)
T PF03818_consen 3 MIEKVLTKNGLITAFAVVGIIMWVSYWLSKKLTR 36 (60)
T ss_pred HHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4567889999999999999999999999988865
No 18
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=21.45 E-value=2.3e+02 Score=18.03 Aligned_cols=50 Identities=18% Similarity=0.107 Sum_probs=34.7
Q ss_pred chHHHHHHHHHHhhhccchhHhHHHHHHHhHccCCCcHHHHHHHHHHHHHhH
Q 032748 48 LQLTRLLLLMFYGFAYGGPFGHFLHKLMDIIFKGKKDKKTVAKKVLLEQLTS 99 (134)
Q Consensus 48 ~D~~Rt~r~~~~G~~~~gP~~h~wy~~L~~~~~~~~~~~~~~~Kvl~DQ~i~ 99 (134)
-.+-|.+|.++||++. +--.-.-+-.+-+...+ .+...++.-+.+|-...
T Consensus 14 ~aPfR~lR~f~y~a~~-aSa~iG~~i~~~rl~a~-~~l~~~l~nlaI~igav 63 (75)
T PF11998_consen 14 QAPFRGLRRFFYGAFG-ASAGIGLFIFLFRLIAG-PDLNEALPNLAIQIGAV 63 (75)
T ss_pred HCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC-ccHHHHhhhHhHHHHHH
Confidence 3456999999999864 43344555666777776 67778888888875543
No 19
>PRK09609 hypothetical protein; Provisional
Probab=20.97 E-value=4.6e+02 Score=21.32 Aligned_cols=53 Identities=25% Similarity=0.222 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHhHhcCCcchHHHHHHHHHHhhhccchhHhHHHHHHHhHccC
Q 032748 27 TAGILAGCSDAIAQKISGVKKLQLTRLLLLMFYGFAYGGPFGHFLHKLMDIIFKG 81 (134)
Q Consensus 27 ts~~l~~~gD~laQ~~~~~~~~D~~Rt~r~~~~G~~~~gP~~h~wy~~L~~~~~~ 81 (134)
.++...+++|++.=.+.+ ..+.+.=++.-++.|. +.|-+..+.|+.+.++|.+
T Consensus 58 ~G~ivG~lsDLLs~li~p-G~ffPgFTLsa~l~Gl-I~Glf~~~~fk~~~~~f~~ 110 (312)
T PRK09609 58 VGFFTGLLSDLISFLFVP-GVYHPYYTLAAMVYGF-IPGIVGWFFFKFGKKFFGK 110 (312)
T ss_pred HHHHHHHHHHHHHHHhcC-CccCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhH
Confidence 356677889999876654 6888999998887775 6787777888999988876
Done!